RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764505|ref|YP_003065248.2| polysialic acid capsule
expression protein [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)



>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional.
          Length = 326

 Score =  277 bits (711), Expect = 2e-75
 Identities = 134/311 (43%), Positives = 192/311 (61%), Gaps = 8/311 (2%)

Query: 34  EKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPS 93
           E+ GL+ L+  +  +    F  A EK+   KG+VV+ G+GKSGHIG K+A+T ASTGTPS
Sbjct: 21  EREGLAELDQYINQD----FTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPS 76

Query: 94  FFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVA 153
           FFVH  EA+HGDLGM+T  D++I +S SG S E+ A++   +R  +PLI IT   +S +A
Sbjct: 77  FFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMA 136

Query: 154 CHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKL 213
             ADI L +    E+CP GLAPT+S    L +GDALA+ALL++R F+  DF + HPGG L
Sbjct: 137 RAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGAL 196

Query: 214 G-TLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272
           G  L +  SD+MH+GD IP V     L DA+  ++ K  G   + D+  K++GI T+GD+
Sbjct: 197 GRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDL 256

Query: 273 FRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
            R F    DL   S+ DVM      +    L   A+ L++  +I+ ++V D     +G++
Sbjct: 257 RRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVL 315

Query: 331 HFLDLLRFGII 341
           H  DLLR G++
Sbjct: 316 HMHDLLRAGVV 326


>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein.  This model describes a
           number of closely related proteins with the
           phosphosugar-binding domain SIS (Sugar ISomerase)
           followed by two copies of the CBS (named after
           Cystathionine Beta Synthase) domain. One is GutQ, a
           protein of the glucitol operon. Another is KpsF, a
           virulence factor involved in capsular polysialic acid
           biosynthesis in some pathogenic strains of E. coli.
          Length = 268

 Score =  271 bits (695), Expect = 1e-73
 Identities = 122/269 (45%), Positives = 167/269 (62%), Gaps = 3/269 (1%)

Query: 65  GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSS 124
           G++VI GIGKSG IG K+ +T ASTGTPSFF+H  EA HGDLGM+  +D+++++S+SG S
Sbjct: 1   GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGES 60

Query: 125 DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLA 184
            EL  ++ + +R S  +IA T    S +A  AD VL +  E E+CP  LAPTTS  + LA
Sbjct: 61  LELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLA 120

Query: 185 IGDALAIALLESRNFSENDFYVLHPGGKLGT-LFVCASDVMHSGDSIPLVKIGCPLIDAI 243
           +GDALA+AL+ +RNFS+ DF   HPGG LG  L V   D+M + D +PL+       DA+
Sbjct: 121 LGDALAVALMRARNFSQEDFASFHPGGALGRKLLVKVKDLMQTTD-LPLIAPTTSFKDAL 179

Query: 244 TILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK-DLNTLSVEDVMIKNPKVILEDTLL 302
             +SEKR G   V DE  +L G+ T+GD+ R           V D M   PK    D LL
Sbjct: 180 LEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPKTFKLDALL 239

Query: 303 TVAMQLLRQHNISVLMVVDDCQKAIGIVH 331
             A++ L +  I+ L+VVDD  K +G++H
Sbjct: 240 LEALEFLERRKITSLVVVDDHNKVLGVLH 268


>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional.
          Length = 321

 Score =  248 bits (636), Expect = 1e-66
 Identities = 117/292 (40%), Positives = 171/292 (58%), Gaps = 4/292 (1%)

Query: 53  FHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRD 112
           F  A   I   +G+VV++GIGKSGHIG K+A+TLASTGTP+FFVH AEA HGDLGMI   
Sbjct: 31  FVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESR 90

Query: 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG 172
           D+++ +S+SG + EL  I+      SI L+A+T +  S +   A  VL +  E E+CP  
Sbjct: 91  DVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMH 150

Query: 173 LAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGT-LFVCASDVMHSGDSIP 231
           LAPT+S +  L +GDALA+A++++R F+E DF   HP G LG  L      +M   D+IP
Sbjct: 151 LAPTSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIP 210

Query: 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLS--VEDVM 289
            V +   ++DA+  LS    G VAV D  Q+++G+ T+GD+ R        L+  V + M
Sbjct: 211 QVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG-GALTTPVNEAM 269

Query: 290 IKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGII 341
            +    +   +    A ++L +  I+   VVD+  K  G ++  D  + GII
Sbjct: 270 TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII 321


>gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
           Reviewed.
          Length = 486

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKV-I 296
            L +A+ +++      V VVDE  KL GIIT  D+   F  DL+   V +VM K   V +
Sbjct: 105 TLAEALALMARYGISGVPVVDENGKLVGIITNRDV--RFETDLSQP-VSEVMTKERLVTV 161

Query: 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
            E T L  A++LL +H I  L VVDD  +  G++
Sbjct: 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195



 Score = 39.0 bits (92), Expect = 0.002
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI-----FRN 275
           S+VM     +  V  G  L +A+ +L E R   + VVD+  +LKG+IT  DI     F N
Sbjct: 150 SEVMTKERLV-TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPN 208

Query: 276 FHKD 279
             KD
Sbjct: 209 ACKD 212



 Score = 38.6 bits (91), Expect = 0.002
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 286 EDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338
           E  ++ +P  +  DT L  A+ L+ ++ IS + VVD+  K +GI+   D +RF
Sbjct: 90  ESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD-VRF 141


>gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
           This model describes a rather tightly conserved cluster
           of IMP dehydrogenase sequences, many of which are
           characterized. The model excludes two related families
           of proteins proposed also to be IMP dehydrogenases, but
           without characterized members. These are related
           families are the subject of separate models.
          Length = 450

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 9/105 (8%)

Query: 238 PLIDAITILSEKRFGCVAVVDEG---QKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK 294
            + D + ++  K    + VV++G    KL GIIT+ DI   F KD     V +VM +  +
Sbjct: 98  TVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI--RFVKDKGK-PVSEVMTRE-E 153

Query: 295 VIL--EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
           VI   E   L  A+++L +H I  L VVD   + +G++   D+++
Sbjct: 154 VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198



 Score = 35.4 bits (82), Expect = 0.022
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275
           S+VM + + +  V  G  L +A+ +L E R   + VVD+  +L G+IT  DI + 
Sbjct: 146 SEVM-TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKR 199



 Score = 31.5 bits (72), Expect = 0.33
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 286 EDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDD---CQKAIGIV 330
           E+ +I +P  I  +T +   ++L+ +  IS + VV+D     K +GI+
Sbjct: 83  ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGII 130


>gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
           Provisional.
          Length = 495

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 238 PLIDAITILSEKRFGCVAVVDEGQ---KLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK 294
            + D + I  +K F  + +  +G+   KL GI+T  DI  +F KD +T  V +VM    K
Sbjct: 114 TVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDI--DFVKDKSTP-VSEVMTPREK 170

Query: 295 VILEDTLLTV--AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
           +++ +T +++  A ++LR+     L +V+D  + + +V   DL +
Sbjct: 171 LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKK 215


>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
           subunit.  This model describes the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea. This transport system belong
           to the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Functionally, this transport system is involved
           in osmoregulation. Under conditions of stress, the
           organism recruits these transport system to accumulate
           glycine betaine and other solutes which offer
           osmo-protection. It has been demonstrated that glycine
           betaine uptake is accompanied by symport with sodium
           ions. The locus has been named variously as proU or
           opuA. A gene library from L.lactis functionally
           complements an E.coli proU mutant. The comlementing
           locus is similar to a opuA locus in B.sutlis. This
           clarifies the differences in nomenclature.
          Length = 363

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 220 ASDVMHSGDSIPLVKI-GCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK 278
           A  +    ++ P+ K        A+ ++ ++R   + VVD   KL G++    I +   K
Sbjct: 241 AERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK 300

Query: 279 DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
                 ++DV+I +   +   TLL   ++ + +  I V  VVD+ Q+ +GIV
Sbjct: 301 A---QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIKV-PVVDEDQRLVGIV 348



 Score = 32.5 bits (74), Expect = 0.15
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGC-VAVVDEGQKLKGIITEGDIFR 274
            DV+   D I  V  G  L + +  + +   G  V VVDE Q+L GI+T G +  
Sbjct: 305 QDVLI--DDIYTVDAGTLLRETVRKVLKA--GIKVPVVDEDQRLVGIVTRGSLVD 355



 Score = 32.5 bits (74), Expect = 0.17
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 282 TLSVEDVMIKNPKV---ILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
               E +  +          D     A+QL+R   +  L VVD   K +G+V
Sbjct: 238 VFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVV 289


>gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase.  Members of
           this family closely resemble cysteine synthase but
           contain an additional C-terminal CBS domain. The
           function of any bacterial member included in this family
           is proposed but not proven.
          Length = 454

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF--HKDLNTLSVEDVMIKNPKVILE 298
           DAI IL E  F  + VV E  K+ G +T  ++       K     +V  VM K    I E
Sbjct: 356 DAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKKFIQIGE 415

Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338
              L+   + L ++  S  +V ++  K IG+V  +DLL F
Sbjct: 416 GEKLSDLSKFLEKN--SSAIVTEE-GKPIGVVTKIDLLSF 452



 Score = 33.6 bits (77), Expect = 0.076
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 278 KDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
             L   +V+D+ +  P  +     +  A+++LR++    L VV +  K +G V   +LL 
Sbjct: 330 DVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLS 389


>gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR;
           Provisional.
          Length = 292

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 108 MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPE 167
           ++   D+++V+S SG + ++   +  A++    +I IT+   S +A  AD V+       
Sbjct: 184 LLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTA-QG 242

Query: 168 SCPHGLAPTTSA-IMQLAIGDALAIAL 193
           S    L    +A I QL I DA  +++
Sbjct: 243 S--PLLGENAAARIAQLNILDAFFVSV 267


>gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family
           transcriptional regulator; Provisional.
          Length = 638

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 27/161 (16%)

Query: 45  LQGELSFQFHCAVEK-IKAIKG--RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEA 101
           L+  L+F+    VE+ I  +    R+   G+G S  +           G P+        
Sbjct: 449 LREHLNFE---HVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTI------- 498

Query: 102 SHGDLGM-------ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC 154
           ++GDL M       + + D+I+ +S SG + EL  +L  A +    +IAITS N + +A 
Sbjct: 499 AYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSN-TPLAK 557

Query: 155 HADIVLTL--PKEPESCPHGLAPTTSAIMQLAIGDALAIAL 193
            A + L     +  ES         S I+ L + D LA+ +
Sbjct: 558 RATVALETDHIEMRES----QLSMISRILHLVMIDILAVGV 594


>gnl|CDD|184871 PRK14869, PRK14869, putative manganese-dependent inorganic
           pyrophosphatase; Provisional.
          Length = 546

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 282 TLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
              V D+ I  P  +  DT L  A  L+ ++N+  L VVD+  K +G+V   DL R
Sbjct: 67  KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLAR 122



 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKV 295
            L +A  ++ E     + VVDE  KL G+++  D+ R +    D   LS     ++N   
Sbjct: 86  SLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIR 145

Query: 296 ILEDTLLT 303
            L+  +L 
Sbjct: 146 TLDGEVLV 153



 Score = 32.5 bits (75), Expect = 0.16
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 220 ASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272
            S +M + D +        L D   ++ + R+    VVDE  K+ G+I+   +
Sbjct: 248 VSYIMTTED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHL 299


>gnl|CDD|128426 smart00116, CBS, Domain in cystathionine beta-synthase and other
           proteins.  Domain present in all 3 forms of cellular
           life. Present in two copies in inosine monophosphate
           dehydrogenase, of which one is disordered in the crystal
           structure [3]. A number of disease states are associated
           with CBS-containing proteins including homocystinuria,
           Becker's and Thomsen disease.
          Length = 49

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH 277
            L +A+ +L E     + VVDE  +L GI+T  DI +   
Sbjct: 10  TLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKALA 49



 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 292 NPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338
           +   +  DT L  A++LLR+H I  L VVD+  + +GIV   D+++ 
Sbjct: 1   DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47


>gnl|CDD|129375 TIGR00274, TIGR00274, N-acetylmuramic acid 6-phosphate etherase.
           This protein, MurQ, is involved in recycling components
           of the bacterial murein sacculus turned over during cell
           growth. The cell wall metabolite anhydro-N-acetylmuramic
           acid (anhMurNAc) is converted by a kinase, AnmK, to
           MurNAc-phosphate, then converted to
           N-acetylglucosamine-phosphate by this etherase, called
           MurQ. This family of proteins is similar to the
           C-terminal half of a number of vertebrate glucokinase
           regulator proteins and contains a Prosite pattern which
           is shared by this group of proteins in a region of local
           similarity.
          Length = 291

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 22/125 (17%)

Query: 65  GRVVITGIGKSGHIGSKLASTLAST-------------GTPSFFVHAAE-------ASHG 104
           GR++  G G SG +G   AS    T             G     +HA E       A   
Sbjct: 58  GRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGAN 117

Query: 105 DLGMI--TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTL 162
           DL  I  T++D+++ ++ SG +  + A L YAR      I+I    KS  +  ADI +  
Sbjct: 118 DLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177

Query: 163 PKEPE 167
              PE
Sbjct: 178 IVGPE 182


>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
           Validated.
          Length = 502

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 24/169 (14%)

Query: 175 PTTSAIMQLAIGDALAIALLESRNFS--------ENDFYVLHPGGKLGTLFVCASDVMHS 226
           P  SAIMQ    D +AIAL      S        E++  ++         FV  SD   +
Sbjct: 53  PLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFV-VSDSNLT 111

Query: 227 GDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQ---KLKGIITEGDIFRNFHKDLNTL 283
            D+         L D + +  +     VAV ++G    KL GI+T  D +R     L+T 
Sbjct: 112 PDN--------TLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRD-YRISRMSLDTK 162

Query: 284 SVEDVMIKNPKVIL--EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
            V+D M    K++   E T L  A  ++  H ++ L +VD     + +V
Sbjct: 163 -VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLV 210


>gnl|CDD|183195 PRK11557, PRK11557, putative DNA-binding transcriptional regulator;
           Provisional.
          Length = 278

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 31  IIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTG 90
           +I E    +++ ++L      + H  V  +++ + R+++TGIG SG +    A  L   G
Sbjct: 98  LIKEN--TAAMRATLDVNSEEKLHECVTMLRSAR-RIILTGIGASGLVAQNFAWKLMKIG 154

Query: 91  TPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS 150
             +       A    +  ++ DDL++ +S+SG   EL      A R    ++AIT    +
Sbjct: 155 INAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPN 214

Query: 151 VVACHADIVL-TLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLE 195
            +   A   L T+ +E  +     A  +S   Q  + D L +AL++
Sbjct: 215 ALQQRASHCLYTIAEEQATRS---AAISSTHAQGMLTDLLFMALIQ 257


>gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase.  Members of this
           protein family are 6-phospho 3-hexuloisomerase (PHI), or
           the PHI domain of a fusion protein. This enzyme is part
           of the ribulose monophosphate (RuMP) pathway, which in
           one direction removes the toxic metabolite formaldehyde
           by assimilation into fructose-6-phosphate. In the other
           direction, in species lacking a complete pentose
           phosphate pathway, the RuMP pathway yields
           ribulose-5-phosphate, necessary for nucleotide
           biosynthesis, at the cost of also yielding formaldehyde.
           These latter species tend usually have a
           formaldehyde-activating enzyme to attach formaldehyde to
           the C1 carrier tetrahydromethanopterin.
          Length = 179

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 65  GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM--ITRDDLIIVLSWSG 122
            R+ + G G+SG +G   A  L   G   + V       G+     I + DL+I +S SG
Sbjct: 31  KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVV-------GETTTPSIKKGDLLIAISGSG 83

Query: 123 SSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP----KEPESCPHGLAPTTS 178
            ++ L  +   A+     + AIT+  +S +   AD+V+ +P    K+ E     + P  S
Sbjct: 84  ETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGS 143

Query: 179 AIMQ--LAIGDALAIALLESRNFSENDFYVLH 208
              Q  L   DA+ + L++ +   E +    H
Sbjct: 144 LFEQSLLLFLDAVILKLMKKKGLDEEEMKKRH 175


>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
           Validated.
          Length = 479

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDI--FRNFHKDLNTLSVEDVMIKNPKVILE 298
           DA+ +L ++  G V VVDE  +  G++TE D      F        V DVM  +   +  
Sbjct: 110 DALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRF------TQVRDVMSTDLVTLPA 163

Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340
            T    A  LL    + +  VVD   + +G++     LR  I
Sbjct: 164 GTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205


>gnl|CDD|183600 PRK12570, PRK12570, N-acetylmuramic acid-6-phosphate etherase;
           Reviewed.
          Length = 296

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 25/137 (18%)

Query: 56  AVEKI-KAIK--GRVVITGIGKSGHIGSKLASTLAST-------------GTPSFFVHAA 99
           AV+KI  A K  GR++  G G SG +G   AS    T             G P     A 
Sbjct: 47  AVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAV 106

Query: 100 EASHGDLGMI---------TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS 150
           E +  D  +          T DD+++ ++ SG +  +   L YA++     IA++    S
Sbjct: 107 EGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDS 166

Query: 151 VVACHADIVLTLPKEPE 167
            +A  ADI ++    PE
Sbjct: 167 PIAKIADIAISPVVGPE 183


>gnl|CDD|183082 PRK11302, PRK11302, DNA-binding transcriptional regulator HexR;
           Provisional.
          Length = 284

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPH 171
            D+++++S +G +  L  +   AR     +IAITS   S +A  A + LTL   PE    
Sbjct: 176 GDVVVLISHTGRTKSLVELAQLARENGATVIAITSAG-SPLAREATLALTLD-VPEDTDI 233

Query: 172 GLAPTTSAIMQLAIGDALA 190
            + P  S I QL + D LA
Sbjct: 234 YM-PMVSRIAQLTVIDVLA 251


>gnl|CDD|162718 TIGR02128, G6PI_arch, bifunctional phosphoglucose/phosphomannose
           isomerase.  This bifunctional isomerase is a member of
           the larger PGI superfamily and only distantly related to
           other glucose-6-phosphate isomerases. The family is
           limited to the archaea.
          Length = 308

 Score = 36.6 bits (85), Expect = 0.008
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 57  VEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM---ITRDD 113
           +++I  I   +VI G+G SG I  ++ S L    +    V   +    D  +   +    
Sbjct: 14  IDEILKIYDEIVICGMGGSG-IAGRIISILLLEKSFQGPVFVVK----DYRLPRFVDGKT 68

Query: 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146
           L+I +S+SG+++E  + +  A++    +IAITS
Sbjct: 69  LLIAVSYSGNTEETLSAVEEAKKKGAKVIAITS 101


>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose
           isomerase; Validated.
          Length = 337

 Score = 36.9 bits (86), Expect = 0.008
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 40  SLESSLQGELSFQFHCAVE-KIKAIKGRVVITGIGKSGHIGSKLASTLASTGTP-SFFVH 97
           +     +  L       +E  ++ I   +VI+G+G SG IG  L   L         FV+
Sbjct: 10  NWPEQFEEALEIAISLDLEEDLEKID-NIVISGMGGSG-IGGDLLRILLFDELKVPVFVN 67

Query: 98  AAEASHGDL--GMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146
                        +    L+I +S+SG+++E  + +  A +    +IAITS
Sbjct: 68  -----RDYTLPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS 113


>gnl|CDD|178531 PLN02945, PLN02945, nicotinamide-nucleotide
           adenylyltransferase/nicotinate-nucleotide
           adenylyltransferase.
          Length = 236

 Score = 35.4 bits (82), Expect = 0.019
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 209 PGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIIT 268
               +  + +C SD++ S  S P V I        TI  +  +G V +  EGQ ++ +++
Sbjct: 126 SEESVRVMLLCGSDLLESF-STPGVWIP---DQVRTICRD--YGVVCIRREGQDVEKLVS 179

Query: 269 EGDIFRNFHKDLNTLSVEDV 288
           + +I    ++  N L V+D+
Sbjct: 180 QDEILNE-NRG-NILVVDDL 197


>gnl|CDD|180083 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
           Reviewed.
          Length = 299

 Score = 33.2 bits (77), Expect = 0.093
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 25/138 (18%)

Query: 55  CAVEKI-KAIK--GRVVITGIGKSGHIGSKLASTLAST-GTP------------SFFVHA 98
            AV+    A++  GR++  G G SG +G   AS    T G P                 A
Sbjct: 50  AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKA 109

Query: 99  AEASHGD--LGM-------ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK 149
            E +  D  LG        +T  D+++ ++ SG +  +   L YAR      I I+    
Sbjct: 110 VEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPG 169

Query: 150 SVVACHADIVLTLPKEPE 167
           S ++  ADI + +   PE
Sbjct: 170 SPLSKEADIAIEVVVGPE 187


>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein.  This
           model represents a family of proteins, often annotated
           as a putative IMP dehydrogenase, related to IMP
           dehydrogenase and GMP reductase and restricted to the
           high GC Gram-positive bacteria. All species in which a
           member is found so far (Corynebacterium glutamicum,
           Mycobacterium tuberculosis, Streptomyces coelicolor,
           etc.) also have IMP dehydrogenase as described by
           TIGRFAMs entry TIGR01302.
          Length = 475

 Score = 32.6 bits (74), Expect = 0.14
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDI--FRNFHKDLNTLSVEDVMIKNPKVILE 298
           DA+ ++ ++  G   V+ E + + G++T+ D+     F +      V D+M  +      
Sbjct: 109 DAMALIHKRAHGAAVVILEDRPV-GLVTDSDLLGVDRFTQ------VRDIMSTDLVTAPA 161

Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340
           DT    A  LL      V  +VD      GI+     LR  I
Sbjct: 162 DTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203


>gnl|CDD|181854 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
          Length = 304

 Score = 32.6 bits (75), Expect = 0.14
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI 180
           SG+S    AI   A R+ I L+ +T   + V+      V   P            TT A 
Sbjct: 195 SGTSQLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDP----VDTTGA- 249

Query: 181 MQLAIGDALAIALL 194
                GDA    LL
Sbjct: 250 -----GDAFVAGLL 258


>gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
          Length = 505

 Score = 32.3 bits (74), Expect = 0.18
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275
           S+VM S D +     G  L +A  +L + + G + +V+E  +L  ++T  D+ R 
Sbjct: 166 SEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220


>gnl|CDD|185379 PRK15482, PRK15482, transcriptional regulator MurR; Provisional.
          Length = 285

 Score = 32.0 bits (72), Expect = 0.26
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 67  VVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM---ITRDDLIIVLSWSGS 123
           + ITG+G S  +G  L+  L   G   + V     +H    +   + + D+ I +S+SGS
Sbjct: 138 IQITGLGGSALVGRDLSFKLMKIG---YRVACEADTHVQATVSQALKKGDVQIAISYSGS 194

Query: 124 SDELKAILYYARRFSIPLIAITSENKSVVACHADIVL-TLPKEPESCPHGLAPTTSAIMQ 182
             E+      AR+    +IAITS   S +   A   L T+  E E     ++  T+   Q
Sbjct: 195 KKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTA---Q 251

Query: 183 LAIGDALAIALLE 195
            ++ D L + L++
Sbjct: 252 NSVTDLLFVGLVQ 264


>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
           (isomerizing).  The member from Methanococcus jannaschii
           contains an intein.
          Length = 607

 Score = 31.4 bits (72), Expect = 0.36
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPES 168
           + +D L+I +S SG + +  A L  A+      + I +   S +   +D  L     PE 
Sbjct: 336 VDKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEI 395

Query: 169 CPHGLAPTTSAIMQLAIGDALAIALLESRN 198
              G+A T +   QL +   LA+ L ++R 
Sbjct: 396 ---GVASTKAFTTQLTVLYLLALKLAKARG 422



 Score = 27.6 bits (62), Expect = 4.6
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 23/106 (21%)

Query: 98  AAEASHGDLGMITRDDLIIVLSWSGSS--------DELKAILYYARRFSIPLIAITSENK 149
           A E  HG + +I     ++ ++   S         +E+KA      R +  +I    E+ 
Sbjct: 498 AGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNVEEVKA------RGA-RVIVFADEDD 550

Query: 150 SVVACHADIVLTLPKEPESCPHGLAPTTSAI-MQLAIGDALAIALL 194
             +   AD V+ LP+        LAP    + +QL    A  IAL 
Sbjct: 551 EFLESVADDVIKLPE----VEELLAPIVYTVPLQLL---AYHIALA 589


>gnl|CDD|179226 PRK01115, PRK01115, DNA polymerase sliding clamp; Validated.
          Length = 247

 Score = 30.6 bits (70), Expect = 0.69
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 106 LGMITRDDLIIVLSWSGSSDELKAILYYA--RRFSIPLIAITSEN 148
           L    + D +  L      ++LK        R FS+PL+ ++SE 
Sbjct: 79  LKRAKKGDKLE-LELDEEENKLKITFGGEKTREFSLPLLDVSSEE 122


>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated.
          Length = 322

 Score = 29.6 bits (67), Expect = 1.2
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 21/119 (17%)

Query: 61  KAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFV-------HAAEASHGDLGMITRDD 113
           +  KG V+ITG   SG +G   A  LA  G   + V         AEA+  +LG I  D 
Sbjct: 3   QDAKGTVIITG-ASSG-VGLYAAKALAKRG---WHVIMACRNLKKAEAAAQELG-IPPDS 56

Query: 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG 172
             I+    G  D ++  +   R    PL A+         C+A + + L KEP   P G
Sbjct: 57  YTIIHIDLGDLDSVRRFVDDFRALGKPLDALV--------CNAAVYMPLLKEPLRSPQG 107


>gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional.
          Length = 246

 Score = 29.5 bits (67), Expect = 1.2
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 34/118 (28%)

Query: 109 ITRDDLIIVLSWSG---SSDELKAILYYARRFSIPLIAITS--ENKSVVACH-------- 155
           I   D++IV+S SG      E+ A+   A+     +IA+TS   + SV + H        
Sbjct: 104 IRPGDVLIVVSNSGRNPVPIEM-AL--EAKERGAKVIAVTSLAYSASVASRHSSGKRLAE 160

Query: 156 -ADIVL---------TLPKEPESCPHGLAPT----TSAIMQLAIGDALAIALLESRNF 199
            AD+VL          L       P  + P      +AI+      A     L  R  
Sbjct: 161 VADVVLDNGAPKGDAVLEIPGLEAP--VGPVSTVVGAAILNAIF--AEVAERLVERGI 214


>gnl|CDD|179374 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
           Validated.
          Length = 652

 Score = 29.6 bits (67), Expect = 1.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 54  HCAV--EKIKAIKG-RVVITGIGKSGHIG 79
           +C    EKI+A  G    + GIG++GHIG
Sbjct: 145 YCRDYEEKIEAAGGIDFQLLGIGRTGHIG 173


>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
          Length = 407

 Score = 29.2 bits (66), Expect = 1.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 237 CPLIDAITILSEKRFGCVAVVDEGQKL 263
            PL D + I   + FGCV VVDE   L
Sbjct: 198 APLADIVDI--AEEFGCVLVVDESHSL 222


>gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase;
          Provisional.
          Length = 256

 Score = 29.0 bits (65), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 61 KAIKGRV-VITGIGKSGHIGSKLASTLASTGTPSFFVH 97
            +K +V V+TG+ +   IG+ +   LA  G   FF +
Sbjct: 2  NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTY 39


>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE).  This family of
           prokaryotic proteins models a class of Mg++ transporter
           first described in Bacillus firmus. May form a
           homodimer.
          Length = 449

 Score = 28.3 bits (63), Expect = 3.1
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 28/93 (30%)

Query: 256 VVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLT-----VAMQ--- 307
           V +E + LKG                 LS+ D+++  P+ IL   + +     V +    
Sbjct: 172 VTNESKHLKG----------------VLSIRDLILAKPEEILSSIMRSSVFSIVGVNDQE 215

Query: 308 ----LLRQHNISVLMVVDDCQKAIGIVHFLDLL 336
               L+++++   + VVD+  + +GIV   D++
Sbjct: 216 EVARLIQKYDFLAVPVVDNEGRLVGIVTVDDII 248


>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
          Length = 352

 Score = 27.7 bits (61), Expect = 4.7
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 76  GHI--GSKLASTLASTGTP---SFFVHAAEASHGDLGMITRDDLI 115
           GH+    +  +T    G P   S+ V AAE SHG++ M++ ++++
Sbjct: 225 GHVIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEIL 269


>gnl|CDD|152352 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This
           family of proteins are functionally uncharacterized.
           This protein is found in eukaryotes. Proteins in this
           family are typically between 435 to 791 amino acids in
           length. This family is related to pfam00589 suggesting
           it may be an integrase enzyme.
          Length = 414

 Score = 27.8 bits (62), Expect = 4.7
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 140 PLIAITSENKSVVA--CHADIVLTLPKEPESCPH 171
            L   TS     +    + DI LTL ++P+    
Sbjct: 33  LLAGFTSNRPGALLSLRYKDIELTLIRDPDGGRP 66


>gnl|CDD|177742 PLN00133, PLN00133, class I-fumerate hydratase; Provisional.
          Length = 576

 Score = 27.1 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 154 CHADIVLTLPKEPESCPHGLAPTTSAIMQ 182
           CH   V+ LP+   SCP G+  + SA  Q
Sbjct: 331 CHDVRVIRLPRHGASCPVGIGVSCSADRQ 359


>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
          Length = 382

 Score = 27.2 bits (61), Expect = 7.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 120 WSGSSDELKAILYYARRFSIPLIA 143
           W+ S D+L+AIL + RR  + ++A
Sbjct: 173 WTASRDDLRAILAHCRRHGLWIVA 196


>gnl|CDD|178980 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
           aminotransferase; Reviewed.
          Length = 604

 Score = 26.5 bits (60), Expect = 9.2
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 40  SLESSLQGELSFQFHC--AVEKIKAIKGRVVITGIGKS---GHIGSKLASTLASTGTPSF 94
           ++  +L+G L        A E +K I  R+ I   G S   G +   L  +LA       
Sbjct: 264 AIRDTLEGRLDELGEGELADEDLKKID-RIYIVACGTSYHAGLVAKYLIESLAGIPVE-- 320

Query: 95  FVHAA-EASHGDLGMITRDDLIIVLSWSG-SSDELKAILYYARRFSIPLIAITSENKSVV 152
            V  A E  + D  +++   L+I +S SG ++D L A L  A+      +AI +   S +
Sbjct: 321 -VEIASEFRYRD-PVLSPKTLVIAISQSGETADTLAA-LRLAKELGAKTLAICNVPGSTI 377

Query: 153 ACHADIVLTLPKEPESCPHGLAPT---TSAIMQLAIGDALAIALLESRN 198
           A  +D VL     PE    G+A T   T+ +  L +   LA+AL ++R 
Sbjct: 378 ARESDAVLYTHAGPEI---GVASTKAFTAQLAVLYL---LALALAKARG 420


>gnl|CDD|131862 TIGR02815, agaS_fam, putative sugar isomerase, AgaS family.  Some
          members of this protein family are found in regions
          associated with N-acetyl-galactosamine and
          galactosamine untilization and are suggested to be
          isomerases.
          Length = 372

 Score = 26.7 bits (59), Expect = 9.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 66 RVVITGIGKSGHIGSKLASTLAS 88
          R+V+TG G S  IG  LA  LAS
Sbjct: 44 RIVLTGAGTSAFIGDALAPWLAS 66


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0819    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,424,938
Number of extensions: 347721
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 63
Length of query: 341
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 247
Effective length of database: 3,963,321
Effective search space: 978940287
Effective search space used: 978940287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)