BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764505|ref|YP_003065248.2| polysialic acid capsule
expression protein [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MHFYFSHFKSVTRKGHSLMKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKI 60
           MHFYFSHFKSVTRKGHSLMKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKI
Sbjct: 1   MHFYFSHFKSVTRKGHSLMKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKI 60

Query: 61  KAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSW 120
           KAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSW
Sbjct: 61  KAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSW 120

Query: 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI 180
           SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI
Sbjct: 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI 180

Query: 181 MQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLI 240
           MQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLI
Sbjct: 181 MQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLI 240

Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDT 300
           DAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDT
Sbjct: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDT 300

Query: 301 LLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGII 341
           LLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGII
Sbjct: 301 LLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGII 341


>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 38.1 bits (87), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%)

Query: 175 PTTSAIMQLAIGDALAIALLES-------RNFSENDFYV-LHPGGKLGTLFVCASDVMHS 226
           P  SA M       LAIA+ ++       RNFS ++    +H   K             S
Sbjct: 48  PIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKF-----------ES 96

Query: 227 GDSIPLVKIG--CPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDIFRNFHKDLNTL 283
           G  +  V I     L DA+ ++ +     + VV+    KL GI+T  D+   F  +    
Sbjct: 97  GMVVNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV--RFASNAQQ- 153

Query: 284 SVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
           +V ++M +N   + +   L  A  LL QH I  L+VVDD    IG++   D+ R
Sbjct: 154 AVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 26.6 bits (57), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 17  SLMKNSTVQCALRSIIAEKR----------GLSSLESSLQGELSFQFHCAVEKIKAI 63
           S ++N  + CA  SIIAE++          G+   +S+   EL  +F  A + ++++
Sbjct: 90  SFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSV 146


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 475

 Score = 25.4 bits (54), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 211 GKLGTLFV-CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKG--II 267
           GKL +  +   ++++ S D+I     G P+ID I   + ++   +  + EG KL     I
Sbjct: 226 GKLSSYLIKITAEILSSSDTI----TGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTI 281

Query: 268 TEGDIF-RNF 276
           TE  IF RN 
Sbjct: 282 TETAIFARNL 291


>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 890

 Score = 24.6 bits (52), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 274 RNFHKDLNTLSVEDVMIKNPKVILEDTL 301
           RNF    N L  +DV+ +  K+I E  L
Sbjct: 634 RNFETRKNLLKYDDVLNEQRKIIFEQRL 661


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,895
Number of Sequences: 1233
Number of extensions: 8367
Number of successful extensions: 37
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 10
length of query: 341
length of database: 328,796
effective HSP length: 75
effective length of query: 266
effective length of database: 236,321
effective search space: 62861386
effective search space used: 62861386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)