RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >gnl|CDD|181789 PRK09347, folE, GTP cyclohydrolase I; Provisional. Length = 188 Score = 281 bits (721), Expect = 1e-76 Identities = 96/190 (50%), Positives = 130/190 (68%), Gaps = 2/190 (1%) Query: 14 KKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHF 73 +P E+ +EA+R IL +G+DPDREGL DTP RV K Y+ELF+GY P ++ F Sbjct: 1 NEPDKEKIEEAVREILEALGEDPDREGLLDTPKRVAKMYEELFSGYANDP--KEVLNKTF 58 Query: 74 GEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQ 133 E Y +MVL+KDI+F+S CEHH+LP GK H+AYIPK VIGLSK+ RI++ ++RR Q Sbjct: 59 EEEMGYDEMVLVKDITFYSMCEHHLLPFIGKAHVAYIPKGKVIGLSKIARIVDFFARRPQ 118 Query: 134 IQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGK 193 +QERLT QIA A++ +GVAV+IE +HMCM+MRG+++ G TVT+A G F D Sbjct: 119 VQERLTAQIADALQEILGPRGVAVVIEAEHMCMTMRGVRKPGSKTVTSALRGLFKTDPAT 178 Query: 194 TDFFLKMTHN 203 FL + + Sbjct: 179 RAEFLSLIRH 188 >gnl|CDD|129173 TIGR00063, folE, GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. Length = 180 Score = 198 bits (506), Expect = 7e-52 Identities = 89/175 (50%), Positives = 118/175 (67%), Gaps = 3/175 (1%) Query: 24 AIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEASKYQDMV 83 A+R IL IG+D +REGL +TP RV K Y E+F+GY + T F E K+ +MV Sbjct: 4 AMREILELIGEDLNREGLLETPKRVAKMYVEIFSGYDYANFPKITLAI-FQE--KHDEMV 60 Query: 84 LIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIA 143 L++DI+F S CEHH++P GK H+AYIPK VIGLSK+ RI+E ++RR Q+QERLT QIA Sbjct: 61 LVRDITFTSTCEHHLVPFDGKAHVAYIPKDKVIGLSKIARIVEFFARRPQVQERLTQQIA 120 Query: 144 HAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFFL 198 A++ + GVAV++E HMCM MRGI++ G TVT+A G F D+ FL Sbjct: 121 EALQEILEPNGVAVVVEATHMCMKMRGIRKPGSATVTSALGGLFKSDQKTRAEFL 175 >gnl|CDD|183620 PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed. Length = 201 Score = 198 bits (505), Expect = 8e-52 Identities = 77/184 (41%), Positives = 116/184 (63%), Gaps = 4/184 (2%) Query: 19 EEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEASK 78 + A+R +L +G+DPDREGL DTP RV K+ + L GY+Q P + F S Sbjct: 20 PALEAAVRELLEALGEDPDREGLLDTPQRVAKAMQYLCDGYEQDPAEALGALF----DSD 75 Query: 79 YQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERL 138 +MV+++DI +S CEHH+LP G H+AY+P V+GLSK+ RI+++++RRLQIQE L Sbjct: 76 NDEMVIVRDIELYSLCEHHLLPFIGVAHVAYLPGGKVLGLSKIARIVDMFARRLQIQENL 135 Query: 139 TMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFFL 198 T QIA A+ + T ++G AV+IE +H+CM MRG+++ +T+ G F + FL Sbjct: 136 TRQIATAVVTVTQARGAAVVIEAEHLCMMMRGVRKQNSRMITSVMLGAFRDSAQTRNEFL 195 Query: 199 KMTH 202 ++ Sbjct: 196 RLIG 199 >gnl|CDD|178607 PLN03044, PLN03044, GTP cyclohydrolase I; Provisional. Length = 188 Score = 183 bits (467), Expect = 2e-47 Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 4/178 (2%) Query: 24 AIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPT-TQDTSRFHFGE-ASKYQD 81 A+R IL +G+D +REGL DTP RV K+ + GY Q P T+ FH E +++ Sbjct: 4 AVRTILECLGEDVEREGLLDTPKRVAKALLFMTQGYDQDPEVVLGTALFHEPEVHDGHEE 63 Query: 82 MVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVI-GLSKLVRILEVYSRRLQIQERLTM 140 MV+++DI S CE ++P G+IH+ YIP VI GLSKL RI EVY+RRLQ QERLT Sbjct: 64 MVVVRDIDIHSTCEETMVPFTGRIHVGYIPNAGVILGLSKLARIAEVYARRLQTQERLTR 123 Query: 141 QIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEF-SRDKGKTDFF 197 QIA AI S + GV V++E H CM MRG+++ G +T T+A G F S K + +FF Sbjct: 124 QIADAIVESVEPLGVMVVVEAAHFCMVMRGVEKHGASTTTSAVRGCFASNPKLRAEFF 181 >gnl|CDD|185662 PTZ00484, PTZ00484, GTP cyclohydrolase I; Provisional. Length = 259 Score = 180 bits (458), Expect = 2e-46 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 2/181 (1%) Query: 11 MKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSR 70 M+ KK +E A+ +++ G+DPDR+GLK TP RV K+ + L GY Sbjct: 69 MEEKKGAIESARR--KILKSLEGEDPDRDGLKKTPKRVAKALEFLTKGYHMSVEEVIKKA 126 Query: 71 FHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSR 130 E +MV ++DI FS CEHH+LP G+ + YIP K V+GLSK RI+E++SR Sbjct: 127 LFKVEPKNNDEMVKVRDIDIFSLCEHHLLPFEGECTIGYIPNKKVLGLSKFARIIEIFSR 186 Query: 131 RLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRD 190 RLQ+QERLT QIA+A++ GVAV+I HMCM+MRG+++ +T T+A+ G F D Sbjct: 187 RLQVQERLTQQIANALQKYLKPMGVAVVIVASHMCMNMRGVQKHDASTTTSAYLGVFRSD 246 Query: 191 K 191 Sbjct: 247 P 247 >gnl|CDD|178146 PLN02531, PLN02531, GTP cyclohydrolase I. Length = 469 Score = 139 bits (351), Expect = 6e-34 Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 18/206 (8%) Query: 13 LKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK---------QIP 63 A+ ILR +G+DP R+ L TP R ++ G + Sbjct: 261 ASPEPNPAMVSAVESILRSLGEDPLRKELVLTPSRFVRWLLNSTQGSRMGRNLEMKLNGF 320 Query: 64 TTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHV------IG 117 + H + M ++ F+S CEHH+LP +G +H+ Y + I Sbjct: 321 ACEKMDPLH--ANLNEKTMHTELNLPFWSQCEHHLLPFYGVVHVGYFCAEGGRGNRNPIS 378 Query: 118 LSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLT 177 S L I+ Y RLQ+QERLT QIA + SS V V++E H CM RG+++ G + Sbjct: 379 RSLLQSIVHFYGFRLQVQERLTRQIAETV-SSLLGGDVMVVVEASHTCMISRGVEKFGSS 437 Query: 178 TVTTAFTGEFSRDKGKTDFFLKMTHN 203 T T A G FS D FL+ Sbjct: 438 TATIAVLGRFSSDAKARAMFLQSIAT 463 Score = 117 bits (295), Expect = 2e-27 Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 17/155 (10%) Query: 23 EAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQI------------PTTQDTSR 70 A++V+L+ +G+D +REGLK TP RV K+ +E GYKQ D Sbjct: 37 SAVKVLLQGLGEDVNREGLKKTPLRVAKALREATRGYKQSAKDIVGGALFPEAGLDDGV- 95 Query: 71 FHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPK-KHVIGLSKLVRILEVYS 129 G +V+++D+ FSYCE +LP K H+ Y+P + V+GLSKL R+ EV++ Sbjct: 96 ---GHGGGCGGLVVVRDLDLFSYCESCLLPFQVKCHIGYVPSGQRVVGLSKLSRVAEVFA 152 Query: 130 RRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHM 164 +RLQ +RL +I A+ GVAV++E H+ Sbjct: 153 KRLQDPQRLADEICSALHHGIKPAGVAVVLECSHI 187 >gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional. Length = 576 Score = 30.0 bits (68), Expect = 0.51 Identities = 14/44 (31%), Positives = 24/44 (54%) Query: 116 IGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLI 159 + L K+ + VY+ ++ E L + AI ++ + KGVAVL Sbjct: 117 VNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLT 160 >gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional. Length = 445 Score = 29.1 bits (66), Expect = 0.91 Identities = 8/21 (38%), Positives = 13/21 (61%) Query: 19 EEAKEAIRVILRWIGDDPDRE 39 +E +AI L+W+G + DR Sbjct: 51 QEYADAIAEDLKWLGINWDRT 71 >gnl|CDD|152687 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins is found in bacteria. Proteins in this family are typically between 397 and 1543 amino acids in length. This family is the SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family. Length = 1443 Score = 28.3 bits (63), Expect = 1.4 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 11 MKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRV-IKSYKELFAGYK 60 ++++ + E K +I PD EG+ + RV + +L YK Sbjct: 917 LRMQTAKLAEVKSSIEKDKGSYNKLPDLEGIFNLQSRVSLVQSNKLSPEYK 967 >gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 418 Score = 27.6 bits (61), Expect = 2.6 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 105 IHLA-YIPKKHVIGLSKLVRILEV--YSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEG 161 IH+A Y P+ + + + V RRL++ E L + ++ VL+EG Sbjct: 308 IHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEG 367 Query: 162 QH 163 Sbjct: 368 LQ 369 >gnl|CDD|170067 PRK09723, PRK09723, putative fimbrial-like adhesin protein; Provisional. Length = 421 Score = 27.1 bits (60), Expect = 3.2 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 110 IPKKHVIGLSKLVRI--LEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEG 161 P I L VR+ +E ++ + + + + +KGV VLIEG Sbjct: 291 TPVPFDISLQNCVRVRNIETKLVSTKVGTENKQLLGNTLTGNDAAKGVGVLIEG 344 >gnl|CDD|182830 PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional. Length = 199 Score = 27.0 bits (60), Expect = 3.3 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Query: 14 KKPTVEEAKEAIRVIL-RWIGDD---PDREGLKDTPDRV 48 KKP + + IR+I +W G PD GL+ T DRV Sbjct: 3 KKPNHSGSGQ-IRIIGGQWRGRKLPVPDSPGLRPTTDRV 40 >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional. Length = 394 Score = 27.0 bits (60), Expect = 3.5 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 41 LKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGE----ASKYQDMVLIKDISF 90 L P+ V + K L+ Y PTT R F E A KY+ M L+ D+ + Sbjct: 160 LSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIM-LVHDLCY 212 >gnl|CDD|180146 PRK05582, PRK05582, DNA topoisomerase I; Validated. Length = 650 Score = 27.1 bits (61), Expect = 3.7 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 7/31 (22%) Query: 14 KKPTVEE----AKEAIRVILRWIGDDPDREG 40 K P ++E AK+A +V L DPDREG Sbjct: 60 KGPVIKELKKAAKKAKKVYL---ATDPDREG 87 >gnl|CDD|162429 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. Length = 438 Score = 26.7 bits (59), Expect = 4.3 Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 126 EVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEG 161 E+ RRLQ + +I + K VL+EG Sbjct: 354 EIKKRRLQRLQARHNEILDKKMRKQEGKTFKVLVEG 389 >gnl|CDD|182548 PRK10559, PRK10559, p-hydroxybenzoic acid efflux subunit AaeA; Provisional. Length = 310 Score = 26.6 bits (59), Expect = 4.4 Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 177 TTVTTAFTGEFSRDKGKTDFFLKMTHNQR 205 TT T TG+ RD + F K+ H R Sbjct: 279 TTATVVITGKQDRDASQDSPFRKLAHRLR 307 >gnl|CDD|115716 pfam07080, DUF1348, Protein of unknown function (DUF1348). This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown. Length = 143 Score = 26.7 bits (59), Expect = 4.6 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 17 TVEEAKEAIRVILR-WIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGE 75 T E A + +R+ W DP + L T D V ++ E F G + I F + Sbjct: 8 TRETAIQKVRMAEDAWNSRDPAKVALAYTEDSVWRNRSEFFQGREAI------VAFLTRK 61 Query: 76 ASKYQDMVLIKDISFF 91 + D LIK++ F Sbjct: 62 WERELDYRLIKELWAF 77 >gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed. Length = 1176 Score = 26.4 bits (59), Expect = 4.6 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Query: 2 KCLRTGVFNMKLKKPTVEE----AKEAIRVILRWIGDDPDREGLK 42 KC R G N++ K+ +E A E V+ I DPD EG K Sbjct: 694 KCPRCGSTNIEDKEEIIEALRELALEVDEVL---IATDPDTEGEK 735 >gnl|CDD|128444 smart00139, MyTH4, Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins. Length = 144 Score = 26.5 bits (59), Expect = 5.0 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%) Query: 13 LKKPTVEEAKEAIRV---ILRWIGDDP 36 LK + E KEA+++ IL+++GD P Sbjct: 11 LKLESDELQKEAVKIFKAILKFMGDLP 37 >gnl|CDD|129429 TIGR00329, gcp_kae1, metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. Length = 305 Score = 26.2 bits (58), Expect = 6.4 Identities = 8/21 (38%), Positives = 13/21 (61%) Query: 145 AIESSTDSKGVAVLIEGQHMC 165 IE+S D GVA++ E ++ Sbjct: 2 GIETSCDDTGVAIVDEEGNVL 22 >gnl|CDD|150775 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members of this family of prokaryotic proteins include various putative virulence factor effector proteins. Their exact function is, as yet, unknown. Length = 852 Score = 26.2 bits (58), Expect = 6.5 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%) Query: 115 VIGLSK-----LVRILEVYSRRLQIQERLTMQIAHAIESS 149 ++GL+K LV L + RL ++E+L + A E S Sbjct: 705 LLGLTKEAVELLVDELVTAAIRLDLEEQLA-KALAANEQS 743 >gnl|CDD|131767 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. Length = 575 Score = 26.0 bits (57), Expect = 6.6 Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 127 VYSRRLQIQERLTMQIAHAIESSTDSKGVAVL 158 VY+R E L I AI + GVAV+ Sbjct: 123 VYNRTAMTAESLPHVIDEAIRRAYAHNGVAVV 154 >gnl|CDD|180637 PRK06599, PRK06599, DNA topoisomerase I; Validated. Length = 675 Score = 26.0 bits (58), Expect = 7.5 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 7/29 (24%) Query: 12 KLKKPTVEEAKEAIRVILRWIGDDPDREG 40 LKK AK+A V L DPDREG Sbjct: 66 ALKK----AAKKADAVYL---ATDPDREG 87 >gnl|CDD|162577 TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. Length = 400 Score = 25.9 bits (57), Expect = 7.8 Identities = 8/26 (30%), Positives = 13/26 (50%) Query: 11 MKLKKPTVEEAKEAIRVILRWIGDDP 36 + L + T+E V+L W G +P Sbjct: 44 LGLARKTIEFVPGKPVVVLTWPGSNP 69 >gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase. Length = 633 Score = 26.0 bits (57), Expect = 8.0 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%) Query: 140 MQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTA 182 ++ A I +SK +LI G H IK D LT T A Sbjct: 165 LKPAFTIIRDENSKCFLLLIRGTH------SIK-DTLTAATGA 200 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.138 0.407 Gapped Lambda K H 0.267 0.0627 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,332,078 Number of extensions: 206737 Number of successful extensions: 474 Number of sequences better than 10.0: 1 Number of HSP's gapped: 464 Number of HSP's successfully gapped: 32 Length of query: 205 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 116 Effective length of database: 4,071,361 Effective search space: 472277876 Effective search space used: 472277876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.2 bits)