RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A Length = 230 Score = 225 bits (576), Expect = 4e-60 Identities = 77/190 (40%), Positives = 110/190 (57%), Gaps = 3/190 (1%) Query: 14 KKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHF 73 + + A ILR +G+DP R+GL TP R + + GY++ + Sbjct: 44 NELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIF- 102 Query: 74 GEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQ 133 + +MV++KDI FS CEHH++P G++H+ Y+P K V+GLSKL RI+E+YSRRLQ Sbjct: 103 --DEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 160 Query: 134 IQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGK 193 +QERLT QIA AI + GV V+IE HMCM MRG+++ TVT+ G F D Sbjct: 161 VQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 220 Query: 194 TDFFLKMTHN 203 + FL + + Sbjct: 221 REEFLTLIRS 230 >1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A* Length = 220 Score = 192 bits (488), Expect = 6e-50 Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 3/188 (1%) Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEAS 77 +E + L+ IG+DP REGL TP+RV K++ L GY+Q + Sbjct: 35 LERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFP---A 91 Query: 78 KYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQER 137 + +MV++K + F+S CEHH+LP +GK+H+ YIP ++GLSK RI+++++RRLQ+QER Sbjct: 92 EGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQER 151 Query: 138 LTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFF 197 L +QIA AI+ + +GV V++EG H+CM MRG+++ TVT+A G F ++ + F Sbjct: 152 LAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEF 211 Query: 198 LKMTHNQR 205 L + Sbjct: 212 LSHLRDGT 219 >1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* Length = 221 Score = 162 bits (410), Expect = 8e-41 Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 4/186 (2%) Query: 19 EEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSY-KELFAGYKQIPTTQDTSRFHFGEAS 77 + I++ + D + L +TP R+ K Y E+F+G Sbjct: 37 SLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDY---ANFPKITLIENKM 93 Query: 78 KYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQER 137 K +MV ++DI+ S CE H + I GK +AYIPK VIGLSK+ RI++ +++R Q+QER Sbjct: 94 KVDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQER 153 Query: 138 LTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFF 197 LT QI A+++ + VAV I+ H C+ RGI+ T TT+ G F + F Sbjct: 154 LTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEF 213 Query: 198 LKMTHN 203 L+ + Sbjct: 214 LRAVRH 219 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.2 bits (104), Expect = 2e-05 Identities = 41/263 (15%), Positives = 67/263 (25%), Gaps = 113/263 (42%) Query: 34 DDPDREGLKDTPDRVIKSY-KELFAGYKQIPTTQDTSRFH------------FG------ 74 + D +K +IK+Y + +++ F FG Sbjct: 110 QENDTTLVKT--KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167 Query: 75 ----EA----SKYQDMV-------------LIKDISFFSYCEHHILPI--W--------G 103 E Y +V LI+ L I W Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227 Query: 104 KIHLAYIPKKHV----IGLSKLV------RILEVYSRRLQIQERLT-----MQ---IAHA 145 K +L IP + IG+ +L ++L +++ L Q A A Sbjct: 228 KDYLLSIP---ISCPLIGVIQLAHYVVTAKLLGFTPG--ELRSYLKGATGHSQGLVTAVA 282 Query: 146 IESSTDS---------KGVAVL--I-------------------------EGQHMCM-SM 168 I + TDS K + VL I EG M S+ Sbjct: 283 I-AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341 Query: 169 RGIKRDGLTTVTTAFTGEFSRDK 191 + ++ + K Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGK 364 Score = 41.1 bits (96), Expect = 2e-04 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 49/148 (33%) Query: 19 EEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTT-QDTSRFHFGEAS 77 ++AI V L +IG + P+ + P+ +D+ + G S Sbjct: 294 VSVRKAITV-LFFIG----VRCYEAYPNTSLP------------PSILEDSLENNEGVPS 336 Query: 78 KYQDMVLIKDIS------FFSYCEHHILPIWGKIHLAYI--PKKHVI--------GLSKL 121 M+ I +++ + + H LP ++ ++ + K V+ GL+ Sbjct: 337 P---MLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392 Query: 122 VRILEV----------YS-RRLQIQERL 138 +R + +S R+L+ R Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRF 420 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.19 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 10/36 (27%) Query: 22 KEAIRVI---LRWIGDDPDREGLKDTPDRVIKSYKE 54 K+A++ + L+ DD P IK+ E Sbjct: 19 KQALKKLQASLKLYADD-------SAPALAIKATME 47 Score = 26.9 bits (58), Expect = 3.8 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 8/34 (23%) Query: 112 KKHVIGLSKLVRILEVYSR----RLQIQERLTMQ 141 +K L KL L++Y+ L I + TM+ Sbjct: 18 EKQ--ALKKLQASLKLYADDSAPALAI--KATME 47 >1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ... Length = 384 Score = 28.3 bits (63), Expect = 1.1 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 13 LKKPTVEEAKEAI-RVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK 60 EE ++ RV+ WI D R K D+++K+ + AG K Sbjct: 339 AGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKA---VLAGLK 384 >2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12} Length = 118 Score = 28.1 bits (62), Expect = 1.4 Identities = 10/56 (17%), Positives = 20/56 (35%) Query: 92 SYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIE 147 + ILPI G + + I ++ + + R + + R +AI Sbjct: 32 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 87 >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 512 Score = 27.9 bits (61), Expect = 1.7 Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%) Query: 168 MRGIKRDGLTTVTTAFTGEF--SRDKGKTDFFLKMT 201 + G+ G + G S D + F L + Sbjct: 50 IGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 >3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} Length = 290 Score = 27.2 bits (60), Expect = 2.5 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 90 FFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESS 149 S C P WG + +AY K + L+R L + + E+ +I I Sbjct: 193 LKSNCLITNQPDWGSVEIAYHGAK--MNREALLRYLVSFREHNEFHEQCVERIFTDIMRY 250 Query: 150 TDSKGVAV 157 + + V Sbjct: 251 CQPQSLTV 258 >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592 Score = 27.2 bits (60), Expect = 2.8 Identities = 8/33 (24%), Positives = 11/33 (33%) Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50 E ++ I LRW G D D + Sbjct: 177 SREYEQQILESLRWCGLDWDEGPDIGGDFGPYR 209 >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} Length = 488 Score = 26.9 bits (59), Expect = 3.4 Identities = 8/33 (24%), Positives = 11/33 (33%) Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50 E ++ I LRW G D D + Sbjct: 73 SREYEQQILESLRWCGLDWDEGPDIGGDFGPYR 105 >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468 Score = 26.7 bits (58), Expect = 3.5 Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50 V A+E I L+W+G D P + Sbjct: 49 VPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 >2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A Length = 613 Score = 26.3 bits (57), Expect = 4.8 Identities = 8/40 (20%), Positives = 14/40 (35%) Query: 16 PTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55 VE K + IL + + + +I + EL Sbjct: 565 WGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNEL 604 >3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} Length = 250 Score = 26.3 bits (57), Expect = 5.7 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%) Query: 18 VEEAKEA-IRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55 VE A A ++V+ + D L V+ S ++ Sbjct: 203 VEAALAAGMQVV--MVPDGNLSRDLTTKATLVLNSLQDF 239 >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} Length = 498 Score = 26.0 bits (56), Expect = 6.3 Identities = 10/33 (30%), Positives = 14/33 (42%) Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50 EE+ A+ LRW+G D D P + Sbjct: 54 SEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86 >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima} Length = 481 Score = 25.9 bits (56), Expect = 6.4 Identities = 7/33 (21%), Positives = 11/33 (33%) Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50 E +E + LRW+G D + Sbjct: 61 EREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93 >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus} Length = 492 Score = 26.0 bits (56), Expect = 7.1 Identities = 7/22 (31%), Positives = 9/22 (40%) Query: 18 VEEAKEAIRVILRWIGDDPDRE 39 E E I L+W+G D Sbjct: 49 RPEYTENILEGLQWLGLTWDEG 70 >2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), structural genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22 Length = 253 Score = 25.6 bits (55), Expect = 7.7 Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 3/39 (7%) Query: 18 VEEAKEA-IRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55 ++ A I + +V K+++ L Sbjct: 217 LDAAAGVGIATG--LASRPGNAPVPDGQKYQVYKNFETL 253 >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Length = 738 Score = 25.7 bits (56), Expect = 8.4 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 43 DTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEASKY 79 D P+ + + + F K + D + + E +Y Sbjct: 602 DIPE-NYERFMDAFQFIKDVALDWDETNYLEAEPGEY 637 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Length = 330 Score = 25.6 bits (55), Expect = 8.5 Identities = 4/18 (22%), Positives = 10/18 (55%) Query: 145 AIESSTDSKGVAVLIEGQ 162 IE + + G+ ++ E + Sbjct: 5 GIEGTAHTLGIGIVSEDK 22 >2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; hyperthermophilic enzyme, esterase, tertiary ALCO alpha/beta hydrolase fold; 2.00A {Pyrobaculum calidifontis} Length = 313 Score = 25.6 bits (55), Expect = 9.0 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 16 PTVEEAKEAIRVILRWI 32 P +EE +EA+ I I Sbjct: 291 PILEEGREAVSQIAASI 307 >2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A Length = 231 Score = 25.3 bits (54), Expect = 9.3 Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 145 AIESSTDSKGVAVLIEGQ 162 AI+++T++ VA+ G Sbjct: 5 AIDTATEACSVALWNNGT 22 >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Length = 553 Score = 25.4 bits (55), Expect = 9.6 Identities = 5/22 (22%), Positives = 9/22 (40%) Query: 18 VEEAKEAIRVILRWIGDDPDRE 39 E E+I+ + W+G Sbjct: 74 DIEYVESIKNDVEWLGFHWSGN 95 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.407 Gapped Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,792,479 Number of extensions: 82508 Number of successful extensions: 344 Number of sequences better than 10.0: 1 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 43 Length of query: 205 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 117 Effective length of database: 3,559,758 Effective search space: 416491686 Effective search space used: 416491686 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 54 (25.3 bits)