RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I
[Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex,
hydrolase/protein binding complex; HET: PHE; 2.70A
{Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A*
1fb1_A
Length = 230
Score = 225 bits (576), Expect = 4e-60
Identities = 77/190 (40%), Positives = 110/190 (57%), Gaps = 3/190 (1%)
Query: 14 KKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHF 73
+ + A ILR +G+DP R+GL TP R + + GY++ +
Sbjct: 44 NELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIF- 102
Query: 74 GEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQ 133
+ +MV++KDI FS CEHH++P G++H+ Y+P K V+GLSKL RI+E+YSRRLQ
Sbjct: 103 --DEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 160
Query: 134 IQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGK 193
+QERLT QIA AI + GV V+IE HMCM MRG+++ TVT+ G F D
Sbjct: 161 VQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 220
Query: 194 TDFFLKMTHN 203
+ FL + +
Sbjct: 221 REEFLTLIRS 230
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex,
pteridine, tetrahydrobiopterin, structural genomics;
HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1
PDB: 1wm9_A* 1wuq_A*
Length = 220
Score = 192 bits (488), Expect = 6e-50
Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 3/188 (1%)
Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEAS 77
+E + L+ IG+DP REGL TP+RV K++ L GY+Q +
Sbjct: 35 LERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFP---A 91
Query: 78 KYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQER 137
+ +MV++K + F+S CEHH+LP +GK+H+ YIP ++GLSK RI+++++RRLQ+QER
Sbjct: 92 EGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQER 151
Query: 138 LTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFF 197
L +QIA AI+ + +GV V++EG H+CM MRG+++ TVT+A G F ++ + F
Sbjct: 152 LAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEF 211
Query: 198 LKMTHNQR 205
L +
Sbjct: 212 LSHLRDGT 219
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET:
GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB:
1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A*
Length = 221
Score = 162 bits (410), Expect = 8e-41
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 4/186 (2%)
Query: 19 EEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSY-KELFAGYKQIPTTQDTSRFHFGEAS 77
+ I++ + D + L +TP R+ K Y E+F+G
Sbjct: 37 SLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDY---ANFPKITLIENKM 93
Query: 78 KYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQER 137
K +MV ++DI+ S CE H + I GK +AYIPK VIGLSK+ RI++ +++R Q+QER
Sbjct: 94 KVDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQER 153
Query: 138 LTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFF 197
LT QI A+++ + VAV I+ H C+ RGI+ T TT+ G F + F
Sbjct: 154 LTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEF 213
Query: 198 LKMTHN 203
L+ +
Sbjct: 214 LRAVRH 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.2 bits (104), Expect = 2e-05
Identities = 41/263 (15%), Positives = 67/263 (25%), Gaps = 113/263 (42%)
Query: 34 DDPDREGLKDTPDRVIKSY-KELFAGYKQIPTTQDTSRFH------------FG------ 74
+ D +K +IK+Y + +++ F FG
Sbjct: 110 QENDTTLVKT--KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 75 ----EA----SKYQDMV-------------LIKDISFFSYCEHHILPI--W--------G 103
E Y +V LI+ L I W
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 104 KIHLAYIPKKHV----IGLSKLV------RILEVYSRRLQIQERLT-----MQ---IAHA 145
K +L IP + IG+ +L ++L +++ L Q A A
Sbjct: 228 KDYLLSIP---ISCPLIGVIQLAHYVVTAKLLGFTPG--ELRSYLKGATGHSQGLVTAVA 282
Query: 146 IESSTDS---------KGVAVL--I-------------------------EGQHMCM-SM 168
I + TDS K + VL I EG M S+
Sbjct: 283 I-AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 169 RGIKRDGLTTVTTAFTGEFSRDK 191
+ ++ + K
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGK 364
Score = 41.1 bits (96), Expect = 2e-04
Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 49/148 (33%)
Query: 19 EEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTT-QDTSRFHFGEAS 77
++AI V L +IG + P+ + P+ +D+ + G S
Sbjct: 294 VSVRKAITV-LFFIG----VRCYEAYPNTSLP------------PSILEDSLENNEGVPS 336
Query: 78 KYQDMVLIKDIS------FFSYCEHHILPIWGKIHLAYI--PKKHVI--------GLSKL 121
M+ I +++ + + H LP ++ ++ + K V+ GL+
Sbjct: 337 P---MLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 122 VRILEV----------YS-RRLQIQERL 138
+R + +S R+L+ R
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRF 420
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.19
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 10/36 (27%)
Query: 22 KEAIRVI---LRWIGDDPDREGLKDTPDRVIKSYKE 54
K+A++ + L+ DD P IK+ E
Sbjct: 19 KQALKKLQASLKLYADD-------SAPALAIKATME 47
Score = 26.9 bits (58), Expect = 3.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 112 KKHVIGLSKLVRILEVYSR----RLQIQERLTMQ 141
+K L KL L++Y+ L I + TM+
Sbjct: 18 EKQ--ALKKLQASLKLYADDSAPALAI--KATME 47
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center
monooxygenase; 1.70A {Methylococcus capsulatus str}
SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C
1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C
1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Length = 384
Score = 28.3 bits (63), Expect = 1.1
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 13 LKKPTVEEAKEAI-RVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK 60
EE ++ RV+ WI D R K D+++K+ + AG K
Sbjct: 339 AGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKA---VLAGLK 384
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA
integration, DNA recombination, structural genomics,
protein structure initiative; NMR {Escherichia coli
k-12}
Length = 118
Score = 28.1 bits (62), Expect = 1.4
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 92 SYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIE 147
+ ILPI G + + I ++ + + R + + R +AI
Sbjct: 32 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 87
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 27.9 bits (61), Expect = 1.7
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 168 MRGIKRDGLTTVTTAFTGEF--SRDKGKTDFFLKMT 201
+ G+ G + G S D + F L +
Sbjct: 50 IGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta
structure, structural genomics, PSI-2; HET: MSE GUN;
1.53A {Vibrio cholerae o1 biovar eltor str}
Length = 290
Score = 27.2 bits (60), Expect = 2.5
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 90 FFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESS 149
S C P WG + +AY K + L+R L + + E+ +I I
Sbjct: 193 LKSNCLITNQPDWGSVEIAYHGAK--MNREALLRYLVSFREHNEFHEQCVERIFTDIMRY 250
Query: 150 TDSKGVAV 157
+ + V
Sbjct: 251 CQPQSLTV 258
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 27.2 bits (60), Expect = 2.8
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50
E ++ I LRW G D D +
Sbjct: 177 SREYEQQILESLRWCGLDWDEGPDIGGDFGPYR 209
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima}
Length = 488
Score = 26.9 bits (59), Expect = 3.4
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50
E ++ I LRW G D D +
Sbjct: 73 SREYEQQILESLRWCGLDWDEGPDIGGDFGPYR 105
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 26.7 bits (58), Expect = 3.5
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50
V A+E I L+W+G D P +
Sbjct: 49 VPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 26.3 bits (57), Expect = 4.8
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 16 PTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55
VE K + IL + + + +I + EL
Sbjct: 565 WGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNEL 604
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 26.3 bits (57), Expect = 5.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 18 VEEAKEA-IRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55
VE A A ++V+ + D L V+ S ++
Sbjct: 203 VEAALAAGMQVV--MVPDGNLSRDLTTKATLVLNSLQDF 239
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Length = 498
Score = 26.0 bits (56), Expect = 6.3
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50
EE+ A+ LRW+G D D P +
Sbjct: 54 SEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA
ligase 1, glurs 1, structural genomics; 2.34A
{Thermotoga maritima}
Length = 481
Score = 25.9 bits (56), Expect = 6.4
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIK 50
E +E + LRW+G D +
Sbjct: 61 EREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide- binding, protein biosynthesis;
HET: GLU; 2.45A {Synechococcus elongatus}
Length = 492
Score = 26.0 bits (56), Expect = 7.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 18 VEEAKEAIRVILRWIGDDPDRE 39
E E I L+W+G D
Sbjct: 49 RPEYTENILEGLQWLGLTWDEG 70
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein),
structural genomics, PSI, protein structure initiative;
2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Length = 253
Score = 25.6 bits (55), Expect = 7.7
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 18 VEEAKEA-IRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55
++ A I + +V K+++ L
Sbjct: 217 LDAAAGVGIATG--LASRPGNAPVPDGQKYQVYKNFETL 253
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 25.7 bits (56), Expect = 8.4
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 43 DTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEASKY 79
D P+ + + + F K + D + + E +Y
Sbjct: 602 DIPE-NYERFMDAFQFIKDVALDWDETNYLEAEPGEY 637
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A*
Length = 330
Score = 25.6 bits (55), Expect = 8.5
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 145 AIESSTDSKGVAVLIEGQ 162
IE + + G+ ++ E +
Sbjct: 5 GIEGTAHTLGIGIVSEDK 22
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein;
hyperthermophilic enzyme, esterase, tertiary ALCO
alpha/beta hydrolase fold; 2.00A {Pyrobaculum
calidifontis}
Length = 313
Score = 25.6 bits (55), Expect = 9.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 16 PTVEEAKEAIRVILRWI 32
P +EE +EA+ I I
Sbjct: 291 PILEEGREAVSQIAASI 307
>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF,
actin-like-fold, glycoprotease, chaperone; 2.05A
{Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A
Length = 231
Score = 25.3 bits (54), Expect = 9.3
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 145 AIESSTDSKGVAVLIEGQ 162
AI+++T++ VA+ G
Sbjct: 5 AIDTATEACSVALWNNGT 22
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln,
E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 25.4 bits (55), Expect = 9.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 18 VEEAKEAIRVILRWIGDDPDRE 39
E E+I+ + W+G
Sbjct: 74 DIEYVESIKNDVEWLGFHWSGN 95
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.138 0.407
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,792,479
Number of extensions: 82508
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 43
Length of query: 205
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 117
Effective length of database: 3,559,758
Effective search space: 416491686
Effective search space used: 416491686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.3 bits)