BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62] (205 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Score = 426 bits (1096), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/205 (100%), Positives = 205/205 (100%) Query: 1 MKCLRTGVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK 60 MKCLRTGVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK Sbjct: 1 MKCLRTGVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK 60 Query: 61 QIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSK 120 QIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSK Sbjct: 61 QIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSK 120 Query: 121 LVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVT 180 LVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVT Sbjct: 121 LVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVT 180 Query: 181 TAFTGEFSRDKGKTDFFLKMTHNQR 205 TAFTGEFSRDKGKTDFFLKMTHNQR Sbjct: 181 TAFTGEFSRDKGKTDFFLKMTHNQR 205 >gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 189 Score = 26.9 bits (58), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 29 LRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRF---HFGEASKYQDMVLI 85 L+ G D GLK ++ K+YK L G + P T R +F +Y + +I Sbjct: 103 LKTGGGDAGHNGLKSISEKCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPII 162 Query: 86 KDIS 89 +I+ Sbjct: 163 DNIA 166 >gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 401 Score = 26.6 bits (57), Expect = 0.31, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 7 GVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRV 48 G++ + PTV + KE +RV L + D D E L + + V Sbjct: 352 GIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393 >gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 109 Score = 23.5 bits (49), Expect = 2.9, Method: Compositional matrix adjust. Identities = 10/30 (33%), Positives = 18/30 (60%) Query: 132 LQIQERLTMQIAHAIESSTDSKGVAVLIEG 161 ++I + QI +ES++D K + + IEG Sbjct: 5 IKITDAAATQIKTILESNSDKKALRITIEG 34 >gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 154 Score = 23.5 bits (49), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 27/68 (39%) Query: 90 FFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESS 149 F S C P + + L YIPK +I L + + E T+ IA + + Sbjct: 48 FTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTI 107 Query: 150 TDSKGVAV 157 D K + + Sbjct: 108 LDPKWLRI 115 >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 23.1 bits (48), Expect = 4.1, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 80 QDMVLIKDISFFSYCEHHILPIWGKIHLAY 109 +D+ +IKD+S EH+I I +AY Sbjct: 270 KDLTVIKDLSLPLIGEHNISNACASIAVAY 299 >gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 598 Score = 22.7 bits (47), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 102 WGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEG 161 W +IH I H GLS V + L I E + I S +S+ V+ ++ Sbjct: 431 WKRIHSLTISFGH--GLSTTPLQTAVAAAAL-INEGRLIPPTFMIRSREESEKVSRIVLK 487 Query: 162 QHMCMSMRGIKRDGLT 177 ++ +MR + R+G+T Sbjct: 488 KNTVKTMRSLLREGVT 503 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 22.3 bits (46), Expect = 6.1, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 135 QERLTMQIAHAIESSTDSKGVAVLIEG 161 + R T+ IAH + + TD+ + V +G Sbjct: 541 KNRTTLVIAHRLSTITDADNIIVFDQG 567 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.407 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,841 Number of Sequences: 1233 Number of extensions: 5089 Number of successful extensions: 20 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 12 length of query: 205 length of database: 328,796 effective HSP length: 70 effective length of query: 135 effective length of database: 242,486 effective search space: 32735610 effective search space used: 32735610 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 36 (18.5 bits)