BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I
[Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 205

 Score =  426 bits (1096), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKCLRTGVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK 60
           MKCLRTGVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK
Sbjct: 1   MKCLRTGVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK 60

Query: 61  QIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSK 120
           QIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSK
Sbjct: 61  QIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSK 120

Query: 121 LVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVT 180
           LVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVT
Sbjct: 121 LVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVT 180

Query: 181 TAFTGEFSRDKGKTDFFLKMTHNQR 205
           TAFTGEFSRDKGKTDFFLKMTHNQR
Sbjct: 181 TAFTGEFSRDKGKTDFFLKMTHNQR 205


>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score = 26.9 bits (58), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 29  LRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRF---HFGEASKYQDMVLI 85
           L+  G D    GLK   ++  K+YK L  G  + P T    R    +F    +Y  + +I
Sbjct: 103 LKTGGGDAGHNGLKSISEKCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPII 162

Query: 86  KDIS 89
            +I+
Sbjct: 163 DNIA 166


>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 401

 Score = 26.6 bits (57), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 7   GVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRV 48
           G++   +  PTV + KE +RV L  +  D D E L  + + V
Sbjct: 352 GIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393


>gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 109

 Score = 23.5 bits (49), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 132 LQIQERLTMQIAHAIESSTDSKGVAVLIEG 161
           ++I +    QI   +ES++D K + + IEG
Sbjct: 5   IKITDAAATQIKTILESNSDKKALRITIEG 34


>gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 154

 Score = 23.5 bits (49), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 27/68 (39%)

Query: 90  FFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESS 149
           F S C     P +  + L YIPK  +I    L   +  +       E  T+ IA  + + 
Sbjct: 48  FTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTI 107

Query: 150 TDSKGVAV 157
            D K + +
Sbjct: 108 LDPKWLRI 115


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 23.1 bits (48), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 80  QDMVLIKDISFFSYCEHHILPIWGKIHLAY 109
           +D+ +IKD+S     EH+I      I +AY
Sbjct: 270 KDLTVIKDLSLPLIGEHNISNACASIAVAY 299


>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 598

 Score = 22.7 bits (47), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 102 WGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEG 161
           W +IH   I   H  GLS       V +  L I E   +     I S  +S+ V+ ++  
Sbjct: 431 WKRIHSLTISFGH--GLSTTPLQTAVAAAAL-INEGRLIPPTFMIRSREESEKVSRIVLK 487

Query: 162 QHMCMSMRGIKRDGLT 177
           ++   +MR + R+G+T
Sbjct: 488 KNTVKTMRSLLREGVT 503


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 22.3 bits (46), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 135 QERLTMQIAHAIESSTDSKGVAVLIEG 161
           + R T+ IAH + + TD+  + V  +G
Sbjct: 541 KNRTTLVIAHRLSTITDADNIIVFDQG 567


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,841
Number of Sequences: 1233
Number of extensions: 5089
Number of successful extensions: 20
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 205
length of database: 328,796
effective HSP length: 70
effective length of query: 135
effective length of database: 242,486
effective search space: 32735610
effective search space used: 32735610
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 36 (18.5 bits)