HHsearch alignment for GI: 255764507 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=97.68 E-value=0.0012 Score=43.76 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=57.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH-----------CCEEEEEE
Q ss_conf 2999988899998999999997489805998211079899854687522237999866530-----------55244545
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK-----------ANAFIEKA 84 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~-----------~~~FlE~~ 84 (222)
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~-g~~vi-----------ElNASD~--R~~~~I~~~i~~~~~~~sl~~~~~KlIIlD 106 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY-GWEVI-----------ELNASDQ--RTKDVIERVAGEASTSGSLFGAKRKLILLD 106 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCCEE-----------EECCCCC--CCHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 469988939987999999999984-99859-----------9771011--478999999998760688778873499963
Q ss_pred ECCCCCEEE---ECCHHHHHHHCCCCEEE-CC-CHHH--HHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 604573341---32112232210122030-14-5234--4555312674157898621327999999985
Q gi|255764507|r 85 EVHGNFYGT---LRDPIEETISKGKDMLF-DI-DWQG--AQNLHKQMGSNVLSFFILPPTMQELCSRLSL 147 (222)
Q Consensus 85 ~~~g~~YGt---~~~~i~~~l~~g~~~il-di-d~qG--~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~ 147 (222)
T Consensus 107 EvD~l~~~~d~gg~~al~~~ik~s~~PiIli~Nd~~~~~~~~lrs----~c~~i~F~~~~~~~I~~~L~~ 172 (403)
T PRK04195 107 EVDGIHGNADRGGVRAILEIIKKAKNPIILTANDPYDPSLRPLRN----ACLMIEFKRLSKRSIVPVLKR 172 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH----HHHHCCCCCCCHHHHHHHHHH
T ss_conf 434457244479999999998548870899826845567177997----661221799499999999999