HHsearch alignment for GI: 255764507 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=96.77 E-value=0.015 Score=36.73 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=50.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH---HHHCCEEE-EEEECCCCCEE
Q ss_conf 999988899998999999997489805998211079899854687522237999866---53055244-54560457334
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE---LKKANAFI-EKAEVHGNFYG 92 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~---~i~~~~Fl-E~~~~~g~~YG 92 (222)
T Consensus 39 s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~--------~gv~d--i-r~ii~~a~~~~~~~~tilfiDEIHRfn-K 106 (417)
T PRK13342 39 SMILWGPPGTGKTTLARIIAGATDAEFEALSAVT--------SGVKD--L-REVIEEAKQSRLGRRTILFIDEIHRFN-K 106 (417)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC--------CCHHH--H-HHHHHHHHHHHCCCCEEEEEECHHHCC-H
T ss_conf 5998896999899999999998689889961410--------38899--9-999999886314896599997820058-8
Q ss_pred EECCHHHHHHHCCCCEEECCCHHH-HHHHHHCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 132112232210122030145234-45553126741578986213279999999
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDIDWQG-AQNLHKQMGSNVLSFFILPPTMQELCSRL 145 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid~qG-~~~l~~~~~~~~~~IFI~pps~e~L~~RL 145 (222)
T Consensus 107 ~QQD~LLp~vE~g~iiLIgATTENP~f~in~aLlSRc~vf~l~~L~~~di~~iL 160 (417)
T PRK13342 107 AQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDLEQLL 160 (417)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHHHHHHHEECCCCCHHHHHHHH
T ss_conf 999999875112656999741579225348989856570020589999999999