HHsearch alignment for GI: 255764507 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0011 Score=43.93 Aligned_cols=49 Identities=35% Similarity=0.499 Sum_probs=31.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--4687522237999866
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNE 73 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~ 73 (222)
T Consensus 26 ~~Ge~i~ivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~~~~~~~~~~ 76 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD------------PTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHH
T ss_conf 5998999999999839999999976775------------89748999999988599899863