HHsearch alignment for GI: 255764507 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.001 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
T Consensus 31 ~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 2883999999999988999999837