HHsearch alignment for GI: 255764507 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.13 E-value=0.0006 Score=45.68 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8347972999988899998999999997
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
T Consensus 21 ~ipk~GEi~gLiGpNGaGKSTLlk~i~G 48 (255)
T cd03236 21 PVPREGQVLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9898980999989999709999999967