HHsearch alignment for GI: 255764507 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.01 E-value=0.00064 Score=45.52 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--46875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~------------p~~G~I~idg~~i~~~~~~~lr~~ 89 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ------------PQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEEHHHCCHHHHHHC
T ss_conf 2999999999999849999999964546------------788789999999344899999732