HHsearch alignment for GI: 255764507 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.04 E-value=0.00065 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 797299998889999899999999
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
T Consensus 19 ~~G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 19 PLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899999998799986999999998