Query gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 222
No_of_seqs 128 out of 2618
Neff 6.8
Searched_HMMs 39220
Date Mon May 30 03:11:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764507.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00300 gmk guanylate kinase; 100.0 0 0 447.5 19.7 206 10-219 2-208 (208)
2 COG0194 Gmk Guanylate kinase [ 100.0 0 0 419.2 17.1 186 14-204 3-188 (191)
3 TIGR03263 guanyl_kin guanylate 100.0 0 0 405.5 15.9 179 15-197 1-179 (180)
4 pfam00625 Guanylate_kin Guanyl 100.0 0 0 385.0 14.0 180 16-199 2-182 (182)
5 smart00072 GuKc Guanylate kina 100.0 0 0 375.6 13.8 182 15-200 2-184 (184)
6 KOG0609 consensus 100.0 0 0 327.2 11.6 200 3-206 329-534 (542)
7 PRK10078 ribose 1,5-bisphospho 100.0 0 0 316.6 15.5 175 15-201 2-179 (184)
8 cd00071 GMPK Guanosine monopho 100.0 6.8E-43 0 295.0 9.3 131 17-148 1-132 (137)
9 KOG0707 consensus 100.0 4E-42 0 290.1 9.3 182 17-202 39-225 (231)
10 TIGR02322 phosphon_PhnN phosph 100.0 9.3E-29 2.4E-33 204.6 14.0 174 15-197 1-181 (183)
11 COG3709 Uncharacterized compon 99.9 4E-23 1E-27 168.5 13.5 175 14-199 4-183 (192)
12 KOG0708 consensus 99.7 9.2E-18 2.4E-22 134.1 9.8 163 14-201 188-351 (359)
13 PRK05480 uridine kinase; Provi 98.9 5.3E-08 1.4E-12 71.6 12.5 175 10-197 1-203 (209)
14 PRK00698 tmk thymidylate kinas 98.6 9.8E-08 2.5E-12 69.9 5.7 172 14-197 2-201 (204)
15 PRK08356 hypothetical protein; 98.6 7.1E-08 1.8E-12 70.8 4.7 162 15-197 5-191 (195)
16 TIGR01359 UMP_CMP_kin_fam UMP- 98.5 7.4E-08 1.9E-12 70.7 3.9 163 16-196 1-188 (189)
17 COG1936 Predicted nucleotide k 98.5 2.1E-06 5.3E-11 61.4 11.3 160 16-213 1-171 (180)
18 PRK11545 gntK gluconate kinase 98.5 1.5E-06 3.7E-11 62.4 10.4 164 12-197 5-172 (177)
19 PRK04220 2-phosphoglycerate ki 98.5 2E-06 5E-11 61.6 9.8 180 12-201 89-292 (306)
20 PRK06696 uridine kinase; Valid 98.5 8.9E-07 2.3E-11 63.8 7.9 168 13-187 24-218 (227)
21 PRK02496 adk adenylate kinase; 98.5 1.2E-06 3.1E-11 62.9 8.5 165 18-197 4-183 (185)
22 pfam07931 CPT Chloramphenicol 98.4 1.2E-06 3.1E-11 63.0 7.5 159 15-196 1-173 (174)
23 PRK08233 hypothetical protein; 98.4 3.4E-06 8.7E-11 60.0 9.5 159 13-197 1-176 (182)
24 COG0125 Tmk Thymidylate kinase 98.4 1.5E-06 3.8E-11 62.4 7.5 173 14-197 2-202 (208)
25 PRK09825 idnK D-gluconate kina 98.4 1.8E-06 4.6E-11 61.8 7.6 159 14-197 2-167 (176)
26 PRK03839 putative kinase; Prov 98.4 2.8E-06 7.2E-11 60.6 8.6 144 16-199 1-154 (180)
27 PRK09270 frcK putative fructos 98.4 5.2E-06 1.3E-10 58.9 9.8 164 10-183 29-223 (230)
28 PRK12339 2-phosphoglycerate ki 98.3 5.9E-06 1.5E-10 58.5 9.6 171 14-197 2-196 (197)
29 cd02021 GntK Gluconate kinase 98.3 2.7E-07 7E-12 67.1 2.7 115 17-149 1-119 (150)
30 cd02023 UMPK Uridine monophosp 98.3 9.1E-06 2.3E-10 57.3 10.3 168 17-196 1-195 (198)
31 PRK01184 hypothetical protein; 98.3 3E-06 7.7E-11 60.4 7.5 165 16-197 2-176 (183)
32 TIGR02204 MsbA_rel ABC transpo 98.3 1.2E-06 3.1E-11 62.9 5.3 79 14-103 365-448 (576)
33 PTZ00301 uridine kinase; Provi 98.3 1.9E-05 4.9E-10 55.2 10.6 168 14-194 2-201 (210)
34 PRK00131 aroK shikimate kinase 98.2 6.2E-06 1.6E-10 58.4 7.7 151 14-197 3-170 (175)
35 COG2074 2-phosphoglycerate kin 98.2 3.1E-06 7.8E-11 60.4 5.9 174 12-197 86-286 (299)
36 PRK00279 adk adenylate kinase; 98.2 5.5E-06 1.4E-10 58.7 7.1 166 18-197 3-213 (215)
37 PRK07429 phosphoribulokinase; 98.2 3.3E-05 8.4E-10 53.8 10.7 159 9-181 2-184 (331)
38 COG0563 Adk Adenylate kinase a 98.2 8E-06 2E-10 57.7 7.2 162 18-196 3-177 (178)
39 PRK04182 cytidylate kinase; Pr 98.1 7.1E-06 1.8E-10 58.0 6.0 159 16-197 1-171 (178)
40 cd01672 TMPK Thymidine monopho 98.1 2.3E-05 5.8E-10 54.8 8.3 170 16-197 1-199 (200)
41 PRK13973 thymidylate kinase; P 98.0 3.5E-05 8.9E-10 53.6 8.5 172 14-197 2-205 (216)
42 TIGR00763 lon ATP-dependent pr 98.0 5.7E-06 1.4E-10 58.7 4.1 46 1-46 435-483 (941)
43 PRK13975 thymidylate kinase; P 98.0 8.5E-05 2.2E-09 51.1 10.0 163 15-197 2-191 (198)
44 COG1102 Cmk Cytidylate kinase 98.0 4.1E-05 1.1E-09 53.1 8.2 157 16-197 1-171 (179)
45 PRK13974 thymidylate kinase; P 98.0 9.2E-06 2.4E-10 57.3 4.8 175 14-202 2-209 (212)
46 cd02028 UMPK_like Uridine mono 98.0 3.8E-05 9.6E-10 53.4 7.4 125 17-150 1-146 (179)
47 PRK00091 miaA tRNA delta(2)-is 98.0 4.1E-06 1.1E-10 59.5 2.5 55 14-68 3-66 (304)
48 pfam00485 PRK Phosphoribulokin 98.0 4.4E-05 1.1E-09 53.0 7.6 152 17-181 1-188 (196)
49 KOG3079 consensus 98.0 3.7E-05 9.5E-10 53.4 7.2 173 9-197 3-192 (195)
50 PRK12337 2-phosphoglycerate ki 97.9 0.00014 3.6E-09 49.7 9.6 181 13-201 260-470 (492)
51 PRK13946 shikimate kinase; Pro 97.9 7.7E-05 2E-09 51.4 8.0 156 15-197 20-185 (195)
52 PRK12338 hypothetical protein; 97.9 6.2E-05 1.6E-09 52.0 7.5 190 12-208 1-215 (320)
53 PRK13947 shikimate kinase; Pro 97.9 5.1E-05 1.3E-09 52.6 7.0 153 18-197 4-166 (171)
54 cd00227 CPT Chloramphenicol (C 97.9 9.1E-05 2.3E-09 50.9 7.9 159 14-194 1-172 (175)
55 PRK11160 cysteine/glutathione 97.8 2.1E-05 5.3E-10 55.0 4.4 95 12-119 364-468 (575)
56 PRK00625 shikimate kinase; Pro 97.8 0.00011 2.7E-09 50.5 7.5 147 18-189 3-156 (173)
57 PRK00081 coaE dephospho-CoA ki 97.8 2.2E-05 5.6E-10 54.9 4.0 64 130-197 129-193 (199)
58 PRK08154 anaerobic benzoate ca 97.8 0.00021 5.4E-09 48.6 9.0 150 14-197 132-300 (304)
59 PRK13477 bifunctional pantoate 97.8 0.00037 9.5E-09 47.0 10.0 32 13-45 282-313 (512)
60 COG0572 Udk Uridine kinase [Nu 97.8 0.00012 3E-09 50.2 7.3 137 13-164 6-166 (218)
61 pfam02223 Thymidylate_kin Thym 97.8 1.9E-05 4.9E-10 55.3 3.1 157 21-191 2-185 (186)
62 TIGR01978 sufC FeS assembly AT 97.8 4.2E-05 1.1E-09 53.0 4.9 72 11-94 22-93 (248)
63 PRK07261 topology modulation p 97.8 3.6E-05 9.2E-10 53.5 4.4 83 18-113 3-88 (171)
64 PRK11174 cysteine/glutathione 97.8 5.5E-05 1.4E-09 52.3 5.3 78 13-103 374-460 (588)
65 pfam06414 Zeta_toxin Zeta toxi 97.7 6.2E-05 1.6E-09 52.0 5.5 125 11-149 8-139 (191)
66 PRK03731 aroL shikimate kinase 97.7 0.00019 4.9E-09 48.9 7.9 150 18-197 5-169 (172)
67 PRK07933 thymidylate kinase; V 97.7 7.9E-05 2E-09 51.3 5.8 168 16-196 1-211 (213)
68 TIGR00955 3a01204 Pigment prec 97.7 5.7E-05 1.5E-09 52.2 5.0 52 13-74 56-108 (671)
69 cd02026 PRK Phosphoribulokinas 97.7 0.00027 6.9E-09 47.9 8.3 138 17-166 1-159 (273)
70 PRK12289 ribosome-associated G 97.7 1.4E-05 3.4E-10 56.2 1.6 24 14-37 170-193 (351)
71 TIGR02315 ABC_phnC phosphonate 97.7 2.9E-05 7.4E-10 54.1 3.1 61 11-81 24-94 (253)
72 PRK04040 adenylate kinase; Pro 97.7 0.00075 1.9E-08 45.1 10.2 165 15-197 2-188 (189)
73 PRK04195 replication factor C 97.7 0.0012 3.1E-08 43.8 11.2 114 16-147 41-172 (403)
74 TIGR02324 CP_lyasePhnL phospho 97.7 5.7E-05 1.5E-09 52.2 4.4 27 13-39 32-58 (224)
75 TIGR01277 thiQ thiamine ABC tr 97.7 6.6E-05 1.7E-09 51.8 4.7 42 11-53 20-67 (213)
76 pfam00774 consensus 97.7 0.00023 5.8E-09 48.4 7.3 97 98-198 85-183 (223)
77 COG1132 MdlB ABC-type multidru 97.6 2.2E-05 5.5E-10 54.9 2.0 97 12-120 352-458 (567)
78 COG2019 AdkA Archaeal adenylat 97.6 0.00061 1.6E-08 45.6 9.2 163 15-197 4-187 (189)
79 PRK03003 engA GTP-binding prot 97.6 0.00018 4.7E-09 49.0 6.4 180 14-221 210-404 (474)
80 TIGR01313 therm_gnt_kin carboh 97.6 5.9E-05 1.5E-09 52.1 3.9 153 18-196 1-173 (175)
81 PRK07667 uridine kinase; Provi 97.6 0.00081 2.1E-08 44.9 9.7 139 14-166 12-171 (190)
82 KOG3354 consensus 97.6 6.4E-05 1.6E-09 51.9 4.0 113 16-150 13-140 (191)
83 TIGR01846 type_I_sec_HlyB type 97.6 8.7E-05 2.2E-09 51.1 4.7 51 13-74 489-540 (703)
84 PRK05057 aroK shikimate kinase 97.6 0.00016 4.1E-09 49.3 6.0 155 17-197 6-170 (172)
85 TIGR02173 cyt_kin_arch cytidyl 97.6 6.5E-05 1.7E-09 51.9 3.7 115 16-151 1-116 (173)
86 TIGR01360 aden_kin_iso1 adenyl 97.6 0.00041 1E-08 46.8 7.7 165 13-197 2-189 (191)
87 TIGR02673 FtsE cell division A 97.6 5.9E-05 1.5E-09 52.1 3.3 29 13-41 26-55 (215)
88 PTZ00088 adenylate kinase 1; P 97.6 7.5E-05 1.9E-09 51.4 3.8 22 18-39 3-24 (225)
89 pfam03193 DUF258 Protein of un 97.5 3.8E-05 9.8E-10 53.3 2.0 24 14-37 34-57 (161)
90 PRK13948 shikimate kinase; Pro 97.5 0.00027 6.8E-09 47.9 6.2 156 15-197 10-174 (182)
91 TIGR00041 DTMP_kinase thymidyl 97.5 0.00049 1.2E-08 46.3 7.3 133 15-150 2-157 (211)
92 PRK13949 shikimate kinase; Pro 97.5 0.00058 1.5E-08 45.8 7.6 152 18-194 4-167 (169)
93 cd01854 YjeQ_engC YjeQ/EngC. 97.5 4.4E-05 1.1E-09 53.0 1.9 25 14-38 160-184 (287)
94 PRK06547 hypothetical protein; 97.5 0.0012 3E-08 43.8 9.1 147 14-183 14-173 (184)
95 TIGR00958 3a01208 antigen pept 97.5 0.00014 3.5E-09 49.8 4.3 90 7-109 540-648 (770)
96 TIGR03574 selen_PSTK L-seryl-t 97.5 0.00028 7.2E-09 47.8 5.9 154 17-196 1-167 (249)
97 KOG3812 consensus 97.5 0.0013 3.3E-08 43.5 9.2 96 100-198 257-353 (475)
98 PRK09518 bifunctional cytidyla 97.5 0.00018 4.6E-09 49.0 4.7 57 18-74 455-513 (714)
99 KOG1384 consensus 97.5 0.00069 1.8E-08 45.3 7.7 125 14-149 6-159 (348)
100 PRK08118 topology modulation p 97.5 0.00011 2.9E-09 50.3 3.6 80 18-112 4-87 (167)
101 PRK10247 putative ABC transpor 97.5 0.00024 6.2E-09 48.2 5.2 50 13-74 31-82 (225)
102 TIGR02982 heterocyst_DevA ABC 97.4 8.2E-05 2.1E-09 51.2 2.6 57 13-81 29-87 (220)
103 PRK10522 multidrug transporter 97.4 0.00028 7.1E-09 47.8 5.3 52 13-75 347-399 (547)
104 cd01428 ADK Adenylate kinase ( 97.4 0.00015 3.8E-09 49.6 3.9 138 18-170 2-169 (194)
105 PRK10789 putative multidrug tr 97.4 0.00019 4.8E-09 48.9 4.4 80 13-103 339-426 (569)
106 TIGR00972 3a0107s01c2 phosphat 97.4 0.00012 3.2E-09 50.1 3.4 154 13-190 25-208 (248)
107 cd03253 ABCC_ATM1_transporter 97.4 0.00026 6.6E-09 48.0 5.0 52 13-75 25-77 (236)
108 PRK05541 adenylylsulfate kinas 97.4 0.0002 5.2E-09 48.7 4.4 152 9-197 1-171 (176)
109 COG1126 GlnQ ABC-type polar am 97.4 0.00014 3.5E-09 49.8 3.4 25 12-36 25-49 (240)
110 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00031 8E-09 47.5 5.1 51 13-75 26-78 (234)
111 cd02030 NDUO42 NADH:Ubiquinone 97.4 0.0011 2.7E-08 44.1 7.8 65 129-194 145-217 (219)
112 PRK11831 putative ABC transpor 97.4 0.0004 1E-08 46.8 5.6 53 12-76 31-85 (269)
113 TIGR03608 L_ocin_972_ABC putat 97.4 0.00084 2.1E-08 44.7 7.2 54 12-76 21-75 (206)
114 PRK13657 cyclic beta-1,2-gluca 97.4 0.00036 9.2E-09 47.1 5.2 79 13-103 359-446 (585)
115 PRK06762 hypothetical protein; 97.4 0.00044 1.1E-08 46.5 5.5 27 15-41 2-28 (166)
116 cd03292 ABC_FtsE_transporter F 97.4 0.00064 1.6E-08 45.5 6.3 51 13-76 25-78 (214)
117 cd03246 ABCC_Protease_Secretio 97.3 0.00031 7.8E-09 47.5 4.6 50 13-74 26-77 (173)
118 TIGR00455 apsK adenylylsulfate 97.3 0.00015 3.7E-09 49.6 2.9 147 7-195 11-186 (187)
119 TIGR01186 proV glycine betaine 97.3 0.00018 4.5E-09 49.1 3.3 50 13-73 17-67 (372)
120 TIGR01193 bacteriocin_ABC ABC- 97.3 0.00018 4.7E-09 49.0 3.4 25 15-39 500-524 (710)
121 KOG3209 consensus 97.3 6.6E-05 1.7E-09 51.8 1.1 53 42-96 63-115 (984)
122 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.00049 1.2E-08 46.3 5.5 70 13-93 27-101 (238)
123 cd03256 ABC_PhnC_transporter A 97.3 0.00076 1.9E-08 45.0 6.4 53 12-76 24-78 (241)
124 PRK10790 putative multidrug tr 97.3 0.00042 1.1E-08 46.7 5.1 70 13-94 365-440 (593)
125 TIGR03015 pepcterm_ATPase puta 97.3 0.0007 1.8E-08 45.3 6.2 88 14-113 42-130 (269)
126 cd03252 ABCC_Hemolysin The ABC 97.3 0.00046 1.2E-08 46.4 5.3 52 13-75 26-78 (237)
127 PRK00093 engA GTP-binding prot 97.3 0.00019 4.8E-09 48.9 3.1 183 14-221 171-367 (438)
128 PRK13976 thymidylate kinase; P 97.3 0.00042 1.1E-08 46.7 4.5 166 16-197 1-197 (202)
129 PRK09435 arginine/ornithine tr 97.2 0.011 2.9E-07 37.5 11.7 130 6-143 42-180 (325)
130 TIGR03269 met_CoM_red_A2 methy 97.2 0.0011 2.8E-08 44.0 6.5 66 12-77 23-110 (520)
131 KOG3347 consensus 97.2 0.0024 6.1E-08 41.8 8.1 115 12-163 5-124 (176)
132 pfam01121 CoaE Dephospho-CoA k 97.2 0.00025 6.5E-09 48.1 3.1 153 16-186 1-178 (179)
133 TIGR03594 GTPase_EngA ribosome 97.2 0.0029 7.3E-08 41.3 8.5 181 14-221 171-366 (429)
134 TIGR02857 CydD ABC transporter 97.2 0.00026 6.5E-09 48.0 3.2 52 13-69 376-428 (570)
135 COG0703 AroK Shikimate kinase 97.2 0.00063 1.6E-08 45.6 5.1 145 17-197 4-167 (172)
136 TIGR00960 3a0501s02 Type II (G 97.2 0.00029 7.5E-09 47.7 3.4 28 13-40 27-55 (216)
137 TIGR02203 MsbA_lipidA lipid A 97.2 0.00021 5.2E-09 48.7 2.7 94 13-118 386-492 (603)
138 COG1136 SalX ABC-type antimicr 97.2 0.00031 7.9E-09 47.5 3.5 50 12-74 28-80 (226)
139 cd03258 ABC_MetN_methionine_tr 97.2 0.00086 2.2E-08 44.7 5.7 58 12-81 28-87 (233)
140 PRK10070 glycine betaine trans 97.2 0.00079 2E-08 44.9 5.5 50 12-74 51-103 (400)
141 COG1072 CoaA Panthothenate kin 97.2 0.0026 6.6E-08 41.6 8.1 144 10-176 77-250 (283)
142 COG1116 TauB ABC-type nitrate/ 97.2 0.00061 1.6E-08 45.6 4.9 66 12-90 26-93 (248)
143 KOG0058 consensus 97.2 0.00048 1.2E-08 46.3 4.4 27 13-39 492-518 (716)
144 TIGR03415 ABC_choXWV_ATP choli 97.2 0.00033 8.5E-09 47.3 3.4 26 12-37 47-72 (382)
145 cd03294 ABC_Pro_Gly_Bertaine T 97.2 0.00092 2.3E-08 44.5 5.6 53 12-76 47-101 (269)
146 TIGR00174 miaA tRNA delta(2)-i 97.2 0.00071 1.8E-08 45.2 5.1 131 17-149 1-208 (307)
147 COG0237 CoaE Dephospho-CoA kin 97.2 0.00075 1.9E-08 45.1 5.0 164 16-197 3-191 (201)
148 pfam00406 ADK Adenylate kinase 97.2 0.00022 5.6E-09 48.5 2.3 137 20-170 1-174 (186)
149 COG0324 MiaA tRNA delta(2)-iso 97.2 0.00036 9.1E-09 47.1 3.4 54 14-67 2-64 (308)
150 cd03260 ABC_PstB_phosphate_tra 97.2 0.00041 1E-08 46.7 3.6 26 12-37 23-48 (227)
151 cd03262 ABC_HisP_GlnQ_permease 97.2 0.00037 9.4E-09 47.0 3.3 25 13-37 24-48 (213)
152 TIGR01842 type_I_sec_PrtD type 97.1 0.00036 9.1E-09 47.1 3.2 48 14-72 355-403 (556)
153 COG0396 sufC Cysteine desulfur 97.1 0.00092 2.3E-08 44.5 5.2 71 12-96 27-99 (251)
154 PRK11176 lipid transporter ATP 97.1 0.00066 1.7E-08 45.4 4.5 79 13-103 366-454 (581)
155 cd03289 ABCC_CFTR2 The CFTR su 97.1 0.0012 3E-08 43.8 5.7 49 13-74 28-78 (275)
156 cd03236 ABC_RNaseL_inhibitor_d 97.1 0.0006 1.5E-08 45.7 4.2 28 10-37 21-48 (255)
157 cd03261 ABC_Org_Solvent_Resist 97.1 0.00044 1.1E-08 46.5 3.5 52 12-75 23-76 (235)
158 cd03257 ABC_NikE_OppD_transpor 97.1 0.00042 1.1E-08 46.6 3.4 48 12-71 28-77 (228)
159 TIGR01192 chvA glucan exporter 97.1 0.00093 2.4E-08 44.5 5.1 77 15-111 361-438 (592)
160 cd03369 ABCC_NFT1 Domain 2 of 97.1 0.0014 3.4E-08 43.4 5.8 51 13-74 32-83 (207)
161 KOG2004 consensus 97.1 0.0006 1.5E-08 45.7 4.0 42 9-50 432-475 (906)
162 cd03229 ABC_Class3 This class 97.1 0.0005 1.3E-08 46.2 3.5 26 12-37 23-48 (178)
163 cd03299 ABC_ModC_like Archeal 97.1 0.00047 1.2E-08 46.4 3.4 26 12-37 22-47 (235)
164 COG4088 Predicted nucleotide k 97.1 0.00063 1.6E-08 45.6 4.0 125 17-166 3-138 (261)
165 TIGR02639 ClpA ATP-dependent C 97.1 0.00062 1.6E-08 45.6 3.9 31 13-44 524-555 (774)
166 cd03300 ABC_PotA_N PotA is an 97.1 0.00053 1.3E-08 46.0 3.5 26 12-37 23-48 (232)
167 PRK11248 tauB taurine transpor 97.1 0.0005 1.3E-08 46.2 3.3 28 12-39 24-51 (255)
168 PRK01889 ribosome-associated G 97.1 0.00041 1.1E-08 46.7 2.9 26 12-37 191-216 (353)
169 COG4619 ABC-type uncharacteriz 97.1 0.0016 4E-08 43.0 5.8 54 12-76 26-80 (223)
170 cd03254 ABCC_Glucan_exporter_l 97.1 0.0012 3E-08 43.8 5.2 52 13-75 27-79 (229)
171 cd03295 ABC_OpuCA_Osmoprotecti 97.1 0.00053 1.4E-08 46.0 3.4 26 12-37 24-49 (242)
172 cd03296 ABC_CysA_sulfate_impor 97.1 0.00053 1.4E-08 46.0 3.4 26 12-37 25-50 (239)
173 cd03237 ABC_RNaseL_inhibitor_d 97.1 0.00053 1.4E-08 46.0 3.3 27 12-38 22-48 (246)
174 COG3911 Predicted ATPase [Gene 97.1 0.00059 1.5E-08 45.7 3.6 157 14-182 8-168 (183)
175 cd03231 ABC_CcmA_heme_exporter 97.1 0.00062 1.6E-08 45.6 3.7 28 12-39 23-50 (201)
176 PRK00098 ribosome-associated G 97.1 0.00041 1E-08 46.8 2.7 24 14-37 163-186 (298)
177 PRK09984 phosphonate/organopho 97.0 0.00059 1.5E-08 45.7 3.5 27 12-38 27-53 (262)
178 PRK10771 thiQ thiamine transpo 97.0 0.00061 1.5E-08 45.6 3.5 27 12-38 22-48 (233)
179 PRK09580 sufC cysteine desulfu 97.0 0.00062 1.6E-08 45.6 3.6 26 12-37 24-49 (248)
180 cd03271 ABC_UvrA_II The excisi 97.0 0.00065 1.6E-08 45.5 3.6 24 13-36 19-42 (261)
181 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00065 1.7E-08 45.5 3.6 26 13-38 24-49 (205)
182 PRK09700 D-allose transporter 97.0 0.001 2.7E-08 44.1 4.7 48 12-71 28-77 (510)
183 cd03234 ABCG_White The White s 97.0 0.0006 1.5E-08 45.7 3.4 27 12-38 30-56 (226)
184 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.0006 1.5E-08 45.7 3.4 26 12-37 21-46 (211)
185 cd03301 ABC_MalK_N The N-termi 97.0 0.00063 1.6E-08 45.5 3.5 26 12-37 23-48 (213)
186 PRK10851 sulfate/thiosulfate t 97.0 0.00059 1.5E-08 45.7 3.4 26 12-37 25-50 (352)
187 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.00059 1.5E-08 45.7 3.3 26 12-37 27-52 (220)
188 CHL00131 ycf16 sulfate ABC tra 97.0 0.0006 1.5E-08 45.7 3.4 49 12-70 29-79 (252)
189 cd03244 ABCC_MRP_domain2 Domai 97.0 0.0015 3.8E-08 43.1 5.4 50 13-74 28-79 (221)
190 cd03278 ABC_SMC_barmotin Barmo 97.0 0.00068 1.7E-08 45.3 3.6 22 14-36 22-43 (197)
191 cd04163 Era Era subfamily. Er 97.0 0.00059 1.5E-08 45.7 3.3 45 14-59 3-47 (168)
192 PRK11629 lolD lipoprotein tran 97.0 0.00065 1.7E-08 45.5 3.5 50 12-73 32-83 (233)
193 cd03248 ABCC_TAP TAP, the Tran 97.0 0.00064 1.6E-08 45.5 3.4 50 13-74 38-89 (226)
194 TIGR00968 3a0106s01 sulfate AB 97.0 0.0006 1.5E-08 45.7 3.3 157 12-200 23-210 (241)
195 PRK10419 nikE nickel transport 97.0 0.0024 6.1E-08 41.8 6.3 52 12-75 35-88 (266)
196 PRK13648 cbiO cobalt transport 97.0 0.00072 1.8E-08 45.2 3.6 26 13-38 33-58 (269)
197 PRK13635 cbiO cobalt transport 97.0 0.00067 1.7E-08 45.4 3.4 27 13-39 31-57 (279)
198 COG3839 MalK ABC-type sugar tr 97.0 0.00072 1.8E-08 45.2 3.6 24 13-36 27-50 (338)
199 PRK13631 cbiO cobalt transport 97.0 0.00073 1.9E-08 45.1 3.5 27 12-38 49-75 (320)
200 KOG1969 consensus 97.0 0.00088 2.2E-08 44.6 3.9 125 15-146 326-478 (877)
201 TIGR03499 FlhF flagellar biosy 97.0 0.00078 2E-08 45.0 3.6 23 14-36 193-215 (282)
202 cd03245 ABCC_bacteriocin_expor 97.0 0.00072 1.8E-08 45.2 3.4 52 12-75 27-80 (220)
203 PRK10744 phosphate transporter 97.0 0.00079 2E-08 44.9 3.6 25 13-37 34-58 (257)
204 cd03233 ABC_PDR_domain1 The pl 97.0 0.00081 2.1E-08 44.9 3.6 26 13-38 31-56 (202)
205 PRK11153 metN DL-methionine tr 97.0 0.0027 6.8E-08 41.5 6.3 57 13-81 29-87 (343)
206 TIGR00017 cmk cytidylate kinas 97.0 0.00085 2.2E-08 44.7 3.7 58 15-79 2-68 (223)
207 cd03290 ABCC_SUR1_N The SUR do 97.0 0.00078 2E-08 44.9 3.5 27 13-39 25-51 (218)
208 cd04164 trmE TrmE (MnmE, ThdF, 97.0 0.00062 1.6E-08 45.6 3.0 43 17-59 3-45 (157)
209 PRK13808 adenylate kinase; Pro 97.0 0.0044 1.1E-07 40.2 7.3 166 18-198 3-193 (297)
210 PRK11264 putative amino-acid A 97.0 0.00077 2E-08 45.0 3.4 26 12-37 24-49 (248)
211 cd03235 ABC_Metallic_Cations A 96.9 0.00087 2.2E-08 44.7 3.6 28 12-39 22-49 (213)
212 PRK13540 cytochrome c biogenes 96.9 0.00088 2.2E-08 44.6 3.6 29 13-41 25-54 (200)
213 PRK11701 phnK phosphonates tra 96.9 0.00087 2.2E-08 44.7 3.6 27 13-39 30-56 (258)
214 PRK11124 artP arginine transpo 96.9 0.00081 2.1E-08 44.8 3.4 25 12-36 25-49 (242)
215 cd03291 ABCC_CFTR1 The CFTR su 96.9 0.00081 2.1E-08 44.8 3.4 27 13-39 61-87 (282)
216 PRK13634 cbiO cobalt transport 96.9 0.00071 1.8E-08 45.2 3.1 25 13-37 18-42 (276)
217 PRK09493 glnQ glutamine ABC tr 96.9 0.00088 2.3E-08 44.6 3.5 25 13-37 25-49 (240)
218 PRK11000 maltose/maltodextrin 96.9 0.00081 2.1E-08 44.8 3.3 25 13-37 27-51 (369)
219 COG4639 Predicted kinase [Gene 96.9 0.0016 4E-08 43.0 4.8 142 15-186 2-152 (168)
220 PRK11432 fbpC ferric transport 96.9 0.00073 1.9E-08 45.1 3.1 26 12-37 29-54 (351)
221 PRK13633 cobalt transporter AT 96.9 0.00088 2.2E-08 44.6 3.5 26 12-37 34-59 (281)
222 PRK10584 putative ABC transpor 96.9 0.0008 2E-08 44.9 3.2 51 12-74 33-85 (228)
223 PRK11247 ssuB aliphatic sulfon 96.9 0.0008 2E-08 44.9 3.2 29 13-41 36-65 (257)
224 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00085 2.2E-08 44.7 3.4 49 13-73 28-78 (218)
225 TIGR00602 rad24 checkpoint pro 96.9 0.001 2.6E-08 44.2 3.7 35 5-39 108-142 (670)
226 PRK10938 putative molybdenum t 96.9 0.002 5E-08 42.4 5.2 27 13-39 27-53 (490)
227 PRK10619 histidine/lysine/argi 96.9 0.00093 2.4E-08 44.5 3.5 26 12-37 28-53 (257)
228 PRK09452 potA putrescine/sperm 96.9 0.00091 2.3E-08 44.5 3.4 26 12-37 40-65 (378)
229 COG3840 ThiQ ABC-type thiamine 96.9 0.0016 4.1E-08 43.0 4.7 43 13-55 23-70 (231)
230 TIGR03375 type_I_sec_LssB type 96.9 0.0018 4.7E-08 42.6 5.0 51 13-75 489-541 (694)
231 PRK13547 hmuV hemin importer A 96.9 0.0009 2.3E-08 44.6 3.4 28 12-39 24-51 (273)
232 COG1162 Predicted GTPases [Gen 96.9 0.00075 1.9E-08 45.1 3.0 24 14-37 163-186 (301)
233 PRK12288 ribosome-associated G 96.9 0.00057 1.4E-08 45.8 2.3 24 14-37 206-229 (344)
234 cd01895 EngA2 EngA2 subfamily. 96.9 0.00059 1.5E-08 45.7 2.4 55 16-70 3-59 (174)
235 KOG0056 consensus 96.9 0.0015 3.7E-08 43.2 4.4 52 14-75 563-614 (790)
236 PRK13640 cbiO cobalt transport 96.9 0.0009 2.3E-08 44.5 3.4 25 13-37 32-56 (283)
237 cd02024 NRK1 Nicotinamide ribo 96.9 0.0012 3E-08 43.8 4.0 26 17-42 1-26 (187)
238 cd03232 ABC_PDR_domain2 The pl 96.9 0.001 2.6E-08 44.2 3.6 25 13-37 31-55 (192)
239 PRK13646 cbiO cobalt transport 96.9 0.00093 2.4E-08 44.5 3.4 26 12-37 30-55 (286)
240 PRK13548 hmuV hemin importer A 96.9 0.001 2.6E-08 44.2 3.6 26 12-37 25-50 (257)
241 cd03217 ABC_FeS_Assembly ABC-t 96.9 0.00095 2.4E-08 44.4 3.4 26 12-37 23-48 (200)
242 PRK10418 nikD nickel transport 96.9 0.00089 2.3E-08 44.6 3.3 29 12-40 26-54 (254)
243 cd03238 ABC_UvrA The excision 96.9 0.0012 3.1E-08 43.7 3.9 28 13-40 19-46 (176)
244 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0011 2.8E-08 44.0 3.7 28 10-37 20-47 (177)
245 cd03250 ABCC_MRP_domain1 Domai 96.9 0.00095 2.4E-08 44.4 3.3 25 13-37 29-53 (204)
246 PRK03846 adenylylsulfate kinas 96.9 0.0013 3.4E-08 43.4 4.1 154 10-197 19-191 (198)
247 PRK13652 cbiO cobalt transport 96.9 0.00096 2.5E-08 44.4 3.3 25 13-37 28-52 (277)
248 PRK11231 fecE iron-dicitrate t 96.9 0.0011 2.7E-08 44.1 3.5 27 12-38 25-51 (255)
249 PRK00023 cmk cytidylate kinase 96.9 0.0015 3.8E-08 43.2 4.2 31 14-45 3-33 (225)
250 PRK10575 iron-hydroxamate tran 96.9 0.0011 2.8E-08 44.0 3.5 25 13-37 35-59 (265)
251 PRK11650 ugpC glycerol-3-phosp 96.9 0.00099 2.5E-08 44.3 3.3 25 13-37 28-52 (358)
252 TIGR03258 PhnT 2-aminoethylpho 96.9 0.001 2.6E-08 44.2 3.4 25 13-37 29-53 (362)
253 cd03225 ABC_cobalt_CbiO_domain 96.9 0.0011 2.9E-08 43.9 3.6 25 13-37 25-49 (211)
254 cd02020 CMPK Cytidine monophos 96.9 0.0012 3E-08 43.8 3.7 28 17-45 1-28 (147)
255 PRK13651 cobalt transporter AT 96.8 0.0011 2.7E-08 44.1 3.4 26 12-37 30-55 (304)
256 PRK13637 cbiO cobalt transport 96.8 0.00091 2.3E-08 44.5 3.1 27 12-38 30-56 (287)
257 PRK13538 cytochrome c biogenes 96.8 0.0012 3E-08 43.8 3.6 25 13-37 25-49 (204)
258 PRK13642 cbiO cobalt transport 96.8 0.001 2.6E-08 44.2 3.3 27 12-38 30-56 (277)
259 cd03228 ABCC_MRP_Like The MRP 96.8 0.0011 2.9E-08 43.9 3.5 49 13-73 26-76 (171)
260 cd03247 ABCC_cytochrome_bd The 96.8 0.0012 3.2E-08 43.6 3.7 27 13-39 26-52 (178)
261 PRK03695 vitamin B12-transport 96.8 0.0012 3E-08 43.8 3.6 26 12-37 20-45 (245)
262 cd03213 ABCG_EPDR ABCG transpo 96.8 0.0011 2.9E-08 43.9 3.5 25 13-37 33-57 (194)
263 cd03288 ABCC_SUR2 The SUR doma 96.8 0.0013 3.3E-08 43.5 3.7 51 13-75 45-97 (257)
264 COG3842 PotA ABC-type spermidi 96.8 0.0011 2.9E-08 43.9 3.4 25 13-37 29-53 (352)
265 PRK00089 era GTP-binding prote 96.8 0.00082 2.1E-08 44.8 2.7 60 11-70 4-65 (296)
266 PRK13647 cbiO cobalt transport 96.8 0.0012 2.9E-08 43.9 3.4 25 13-37 29-53 (273)
267 PRK13645 cbiO cobalt transport 96.8 0.0011 2.7E-08 44.1 3.2 26 12-37 34-59 (289)
268 PRK13632 cbiO cobalt transport 96.8 0.0011 2.7E-08 44.1 3.2 25 13-37 34-58 (273)
269 cd00464 SK Shikimate kinase (S 96.8 0.003 7.6E-08 41.2 5.5 141 18-184 2-149 (154)
270 PRK13542 consensus 96.8 0.002 5.2E-08 42.3 4.6 27 13-39 42-68 (224)
271 PRK13644 cbiO cobalt transport 96.8 0.0012 3.1E-08 43.7 3.5 26 12-37 25-50 (274)
272 PRK05291 trmE tRNA modificatio 96.8 0.001 2.5E-08 44.3 3.0 56 13-68 214-271 (445)
273 PRK05342 clpX ATP-dependent pr 96.8 0.003 7.6E-08 41.2 5.4 94 17-119 111-206 (411)
274 PRK13650 cbiO cobalt transport 96.8 0.0012 3E-08 43.8 3.4 25 13-37 28-52 (276)
275 PRK13639 cbiO cobalt transport 96.8 0.0012 3.2E-08 43.7 3.5 26 12-37 25-50 (275)
276 PRK09544 znuC high-affinity zi 96.8 0.0014 3.5E-08 43.4 3.6 28 12-39 27-54 (251)
277 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0016 4.2E-08 42.9 4.1 27 13-39 25-51 (166)
278 PRK13641 cbiO cobalt transport 96.8 0.001 2.6E-08 44.2 3.0 25 13-37 31-55 (286)
279 cd03297 ABC_ModC_molybdenum_tr 96.8 0.0012 3E-08 43.8 3.3 24 14-37 22-45 (214)
280 PRK13543 cytochrome c biogenes 96.8 0.0013 3.4E-08 43.5 3.6 27 13-39 35-61 (214)
281 COG3638 ABC-type phosphate/pho 96.8 0.0012 3.2E-08 43.7 3.4 24 13-36 28-51 (258)
282 PRK11607 potG putrescine trans 96.8 0.0012 2.9E-08 43.9 3.2 26 12-37 42-67 (377)
283 PRK10253 iron-enterobactin tra 96.8 0.0011 2.7E-08 44.1 3.0 27 12-38 30-56 (265)
284 cd03214 ABC_Iron-Siderophores_ 96.8 0.0014 3.5E-08 43.3 3.6 27 13-39 23-49 (180)
285 cd03224 ABC_TM1139_LivF_branch 96.8 0.0014 3.6E-08 43.3 3.6 27 12-38 23-49 (222)
286 PRK10908 cell division protein 96.8 0.0012 3.1E-08 43.8 3.2 25 13-37 26-50 (222)
287 PRK13342 recombination factor 96.8 0.015 3.8E-07 36.7 8.8 117 17-145 39-160 (417)
288 TIGR03410 urea_trans_UrtE urea 96.8 0.0014 3.5E-08 43.4 3.5 46 12-69 23-70 (230)
289 PRK08058 DNA polymerase III su 96.8 0.053 1.3E-06 33.2 12.3 21 17-37 30-50 (329)
290 PRK10895 putative ABC transpor 96.8 0.0014 3.6E-08 43.3 3.6 26 12-37 26-51 (241)
291 cd01894 EngA1 EngA1 subfamily. 96.8 0.00044 1.1E-08 46.5 0.9 52 20-71 2-55 (157)
292 COG3265 GntK Gluconate kinase 96.8 0.0078 2E-07 38.6 7.3 150 21-197 1-158 (161)
293 PRK00889 adenylylsulfate kinas 96.7 0.002 5E-08 42.4 4.2 152 12-197 1-169 (175)
294 COG0466 Lon ATP-dependent Lon 96.7 0.0017 4.3E-08 42.8 3.8 93 8-103 343-446 (782)
295 TIGR00630 uvra excinuclease AB 96.7 0.0013 3.4E-08 43.5 3.2 21 15-35 665-685 (956)
296 TIGR03265 PhnT2 putative 2-ami 96.7 0.0014 3.7E-08 43.2 3.3 25 13-37 28-52 (353)
297 PRK13638 cbiO cobalt transport 96.7 0.0016 4E-08 43.0 3.5 26 12-37 24-49 (271)
298 PRK11614 livF leucine/isoleuci 96.7 0.0016 4.1E-08 42.9 3.6 26 12-37 28-53 (237)
299 PRK11300 livG leucine/isoleuci 96.7 0.0016 4.2E-08 42.9 3.6 28 12-39 28-55 (255)
300 PRK13636 cbiO cobalt transport 96.7 0.0016 4.1E-08 42.9 3.5 26 12-37 29-54 (285)
301 COG4778 PhnL ABC-type phosphon 96.7 0.003 7.5E-08 41.3 4.9 28 12-39 34-61 (235)
302 COG1120 FepC ABC-type cobalami 96.7 0.0017 4.3E-08 42.8 3.6 51 13-75 26-78 (258)
303 PRK13544 consensus 96.7 0.0017 4.4E-08 42.8 3.6 28 12-39 24-51 (208)
304 cd01897 NOG NOG1 is a nucleola 96.7 0.0013 3.3E-08 43.5 3.0 54 17-71 2-57 (168)
305 cd03240 ABC_Rad50 The catalyti 96.7 0.0016 4E-08 43.0 3.4 24 14-37 21-44 (204)
306 cd03259 ABC_Carb_Solutes_like 96.7 0.0017 4.3E-08 42.8 3.5 27 12-38 23-49 (213)
307 COG3596 Predicted GTPase [Gene 96.7 0.0023 5.9E-08 41.9 4.2 44 12-55 36-79 (296)
308 PRK09536 btuD corrinoid ABC tr 96.7 0.0015 3.9E-08 43.1 3.3 27 12-38 25-51 (409)
309 PRK13649 cbiO cobalt transport 96.7 0.0015 3.9E-08 43.1 3.2 27 12-38 30-56 (280)
310 PRK13643 cbiO cobalt transport 96.7 0.0015 3.8E-08 43.2 3.2 26 12-37 29-54 (288)
311 COG2884 FtsE Predicted ATPase 96.7 0.0018 4.7E-08 42.6 3.6 28 13-40 26-54 (223)
312 PRK13539 cytochrome c biogenes 96.7 0.0019 4.8E-08 42.5 3.6 26 13-38 26-51 (206)
313 PRK10787 DNA-binding ATP-depen 96.7 0.0022 5.7E-08 42.0 4.0 35 9-43 343-378 (784)
314 COG2274 SunT ABC-type bacterio 96.7 0.0037 9.5E-08 40.6 5.1 52 13-75 497-549 (709)
315 cd03263 ABC_subfamily_A The AB 96.7 0.0018 4.7E-08 42.6 3.6 27 12-38 25-51 (220)
316 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0019 4.8E-08 42.5 3.6 28 12-39 22-49 (157)
317 PRK11022 dppD dipeptide transp 96.7 0.0042 1.1E-07 40.2 5.3 57 12-76 30-88 (327)
318 PRK10261 glutathione transport 96.7 0.0041 1.1E-07 40.3 5.3 29 12-40 39-67 (623)
319 PRK05703 flhF flagellar biosyn 96.7 0.0019 4.9E-08 42.4 3.6 27 11-37 206-232 (412)
320 PRK11537 putative GTP-binding 96.6 0.064 1.6E-06 32.7 11.6 157 17-196 6-173 (317)
321 cd01882 BMS1 Bms1. Bms1 is an 96.6 0.0024 6.2E-08 41.8 4.0 28 14-41 38-65 (225)
322 PTZ00265 multidrug resistance 96.6 0.0031 7.9E-08 41.1 4.5 26 14-39 410-435 (1467)
323 pfam03308 ArgK ArgK protein. T 96.6 0.069 1.7E-06 32.5 12.8 131 5-143 21-160 (267)
324 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.0021 5.5E-08 42.1 3.5 25 13-37 24-48 (144)
325 TIGR02169 SMC_prok_A chromosom 96.6 0.0021 5.2E-08 42.3 3.4 30 3-36 16-45 (1202)
326 KOG0057 consensus 96.6 0.0038 9.6E-08 40.6 4.7 80 14-104 377-460 (591)
327 COG0645 Predicted kinase [Gene 96.6 0.014 3.6E-07 36.9 7.6 110 15-150 1-126 (170)
328 PRK13541 cytochrome c biogenes 96.6 0.0022 5.7E-08 42.0 3.6 27 12-38 23-49 (195)
329 PRK13546 teichoic acids export 96.6 0.0022 5.5E-08 42.1 3.5 25 13-37 48-72 (264)
330 PRK05201 hslU ATP-dependent pr 96.6 0.0032 8.3E-08 41.0 4.4 30 15-45 50-79 (442)
331 PTZ00265 multidrug resistance 96.6 0.0024 6.1E-08 41.8 3.7 90 13-103 1193-1331(1467)
332 pfam08433 KTI12 Chromatin asso 96.6 0.0029 7.4E-08 41.3 4.0 124 17-164 1-132 (266)
333 TIGR00390 hslU heat shock prot 96.6 0.0019 5E-08 42.4 3.1 30 15-45 47-76 (463)
334 cd03215 ABC_Carb_Monos_II This 96.6 0.0015 3.9E-08 43.0 2.6 26 12-37 23-48 (182)
335 cd03267 ABC_NatA_like Similar 96.6 0.0023 5.9E-08 41.9 3.4 25 13-37 45-69 (236)
336 cd03218 ABC_YhbG The ABC trans 96.6 0.0025 6.3E-08 41.8 3.6 27 12-38 23-49 (232)
337 COG0529 CysC Adenylylsulfate k 96.6 0.0027 6.9E-08 41.5 3.8 155 10-198 18-191 (197)
338 PRK13549 xylose transporter AT 96.6 0.0024 6.2E-08 41.8 3.5 28 13-40 29-56 (513)
339 PRK11144 modC molybdate transp 96.5 0.0024 6.2E-08 41.8 3.5 25 13-37 22-46 (352)
340 COG1125 OpuBA ABC-type proline 96.5 0.0024 6.2E-08 41.8 3.5 23 13-35 25-47 (309)
341 PRK10982 galactose/methyl gala 96.5 0.0026 6.6E-08 41.6 3.6 27 12-38 21-47 (491)
342 COG1131 CcmA ABC-type multidru 96.5 0.0028 7E-08 41.4 3.7 26 13-38 29-54 (293)
343 COG1127 Ttg2A ABC-type transpo 96.5 0.0084 2.1E-07 38.3 6.1 54 12-77 31-86 (263)
344 KOG1970 consensus 96.5 0.002 5.2E-08 42.3 3.0 80 12-94 107-188 (634)
345 TIGR00630 uvra excinuclease AB 96.5 0.0015 3.7E-08 43.2 2.2 19 14-32 21-39 (956)
346 TIGR01187 potA polyamine ABC t 96.5 0.0016 4.1E-08 43.0 2.4 144 20-190 1-166 (331)
347 cd03269 ABC_putative_ATPase Th 96.5 0.00046 1.2E-08 46.4 -0.4 28 12-39 23-50 (210)
348 cd03216 ABC_Carb_Monos_I This 96.5 0.0028 7.1E-08 41.4 3.6 49 12-72 23-73 (163)
349 PRK09518 bifunctional cytidyla 96.5 0.0039 9.9E-08 40.5 4.4 31 14-45 3-33 (714)
350 PRK11308 dppF dipeptide transp 96.5 0.002 5.2E-08 42.3 2.9 51 13-75 39-91 (327)
351 PRK10762 D-ribose transporter 96.5 0.0028 7E-08 41.4 3.5 25 13-37 28-52 (501)
352 PRK09473 oppD oligopeptide tra 96.5 0.0026 6.6E-08 41.6 3.3 55 12-75 39-95 (330)
353 KOG0061 consensus 96.5 0.003 7.7E-08 41.2 3.6 41 13-53 54-97 (613)
354 cd03264 ABC_drug_resistance_li 96.5 0.0028 7E-08 41.4 3.4 25 13-38 24-48 (211)
355 TIGR03411 urea_trans_UrtD urea 96.5 0.003 7.8E-08 41.2 3.6 26 12-37 25-50 (242)
356 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0033 8.3E-08 41.0 3.7 26 13-38 24-49 (173)
357 PRK11288 araG L-arabinose tran 96.4 0.003 7.7E-08 41.2 3.5 26 12-37 27-52 (501)
358 TIGR02770 nickel_nikD nickel i 96.4 0.0088 2.3E-07 38.2 5.9 58 11-77 8-68 (239)
359 PRK10535 macrolide transporter 96.4 0.0029 7.3E-08 41.3 3.4 50 13-74 32-83 (648)
360 PRK12269 bifunctional cytidyla 96.4 0.0048 1.2E-07 39.9 4.5 29 16-45 35-63 (863)
361 cd01878 HflX HflX subfamily. 96.4 0.0035 8.9E-08 40.8 3.7 54 14-68 39-96 (204)
362 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0035 8.8E-08 40.8 3.6 26 12-37 23-48 (236)
363 COG4988 CydD ABC-type transpor 96.4 0.0034 8.8E-08 40.8 3.5 53 13-75 345-397 (559)
364 cd01896 DRG The developmentall 96.4 0.0019 4.7E-08 42.5 2.2 42 18-60 3-44 (233)
365 TIGR01351 adk adenylate kinase 96.4 0.0028 7E-08 41.4 3.0 162 18-196 2-231 (232)
366 TIGR02868 CydC ABC transporter 96.4 0.0034 8.7E-08 40.9 3.5 72 14-106 386-459 (566)
367 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.0036 9.3E-08 40.7 3.6 63 12-74 27-100 (254)
368 cd00880 Era_like Era (E. coli 96.4 0.0014 3.5E-08 43.4 1.4 40 20-59 1-40 (163)
369 pfam07728 AAA_5 AAA domain (dy 96.4 0.0084 2.1E-07 38.3 5.4 22 18-39 2-23 (139)
370 cd03270 ABC_UvrA_I The excisio 96.4 0.003 7.7E-08 41.2 3.1 23 13-35 19-41 (226)
371 TIGR01188 drrA daunorubicin re 96.4 0.0045 1.1E-07 40.1 3.9 86 12-103 18-110 (343)
372 PRK00349 uvrA excinuclease ABC 96.3 0.0028 7.2E-08 41.4 2.8 19 14-32 25-43 (944)
373 TIGR00956 3a01205 Pleiotropic 96.3 0.0022 5.7E-08 42.0 2.3 27 13-39 851-877 (1466)
374 cd03265 ABC_DrrA DrrA is the A 96.3 0.0039 1E-07 40.4 3.5 26 12-37 23-48 (220)
375 COG0283 Cmk Cytidylate kinase 96.3 0.0055 1.4E-07 39.5 4.3 175 16-197 5-218 (222)
376 cd03268 ABC_BcrA_bacitracin_re 96.3 0.0043 1.1E-07 40.2 3.7 27 12-38 23-49 (208)
377 PRK13537 lipooligosaccharide t 96.3 0.0041 1E-07 40.4 3.6 26 12-37 28-53 (304)
378 COG0802 Predicted ATPase or ki 96.3 0.0068 1.7E-07 38.9 4.7 72 12-87 22-110 (149)
379 KOG1191 consensus 96.3 0.0031 7.8E-08 41.2 2.9 57 11-67 264-322 (531)
380 TIGR01166 cbiO cobalt ABC tran 96.3 0.0034 8.5E-08 40.9 3.1 25 12-36 15-39 (190)
381 pfam01583 APS_kinase Adenylyls 96.3 0.0051 1.3E-07 39.7 4.0 109 14-144 1-116 (157)
382 TIGR03522 GldA_ABC_ATP gliding 96.3 0.0043 1.1E-07 40.2 3.6 26 12-37 25-50 (301)
383 TIGR03346 chaperone_ClpB ATP-d 96.3 0.0052 1.3E-07 39.7 4.0 20 18-37 197-216 (852)
384 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.3 0.0041 1E-07 40.3 3.5 26 13-38 46-71 (224)
385 PRK10865 protein disaggregatio 96.3 0.0061 1.5E-07 39.3 4.2 20 18-37 202-221 (857)
386 TIGR02528 EutP ethanolamine ut 96.3 0.0037 9.4E-08 40.6 3.1 85 18-134 3-90 (144)
387 COG1117 PstB ABC-type phosphat 96.2 0.0043 1.1E-07 40.2 3.3 23 14-36 32-54 (253)
388 PRK12726 flagellar biosynthesi 96.2 0.0083 2.1E-07 38.4 4.8 26 12-37 203-228 (407)
389 pfam03215 Rad17 Rad17 cell cyc 96.2 0.0062 1.6E-07 39.2 4.1 30 14-44 44-73 (490)
390 COG0542 clpA ATP-binding subun 96.2 0.0051 1.3E-07 39.7 3.6 27 13-39 518-545 (786)
391 PRK11819 putative ABC transpor 96.2 0.0048 1.2E-07 39.9 3.4 25 13-37 31-55 (556)
392 PRK11147 ABC transporter ATPas 96.2 0.0045 1.2E-07 40.1 3.3 24 14-37 28-51 (632)
393 cd01859 MJ1464 MJ1464. This f 96.2 0.0041 1E-07 40.4 3.1 39 14-52 100-138 (156)
394 PRK13536 nodulation factor exp 96.2 0.005 1.3E-07 39.8 3.5 26 12-37 30-55 (306)
395 cd03266 ABC_NatA_sodium_export 96.2 0.0054 1.4E-07 39.6 3.6 26 13-38 29-54 (218)
396 cd00009 AAA The AAA+ (ATPases 96.2 0.006 1.5E-07 39.3 3.8 26 14-39 18-43 (151)
397 pfam00437 GSPII_E Type II/IV s 96.2 0.0058 1.5E-07 39.4 3.7 28 14-41 138-165 (283)
398 PRK11819 putative ABC transpor 96.2 0.0051 1.3E-07 39.7 3.4 27 13-39 348-374 (556)
399 pfam02421 FeoB_N Ferrous iron 96.2 0.0038 9.7E-08 40.5 2.7 52 18-70 2-55 (188)
400 COG0486 ThdF Predicted GTPase 96.2 0.0045 1.1E-07 40.1 3.1 48 14-61 216-265 (454)
401 PRK00635 excinuclease ABC subu 96.2 0.0041 1E-07 40.4 2.8 19 14-32 960-978 (1809)
402 TIGR03594 GTPase_EngA ribosome 96.2 0.0024 6.1E-08 41.8 1.7 49 17-65 1-49 (429)
403 PRK06995 flhF flagellar biosyn 96.2 0.0048 1.2E-07 39.9 3.2 27 11-37 172-198 (404)
404 COG1124 DppF ABC-type dipeptid 96.1 0.0054 1.4E-07 39.6 3.4 165 13-195 31-212 (252)
405 PRK10636 putative ABC transpor 96.1 0.0047 1.2E-07 40.0 3.0 25 13-37 336-360 (638)
406 PRK11147 ABC transporter ATPas 96.1 0.0052 1.3E-07 39.7 3.2 30 12-41 342-372 (632)
407 COG1160 Predicted GTPases [Gen 96.1 0.0058 1.5E-07 39.4 3.5 92 14-114 177-270 (444)
408 PRK10636 putative ABC transpor 96.1 0.005 1.3E-07 39.8 3.1 26 13-38 25-50 (638)
409 PRK10246 exonuclease subunit S 96.1 0.0056 1.4E-07 39.5 3.3 22 15-36 30-51 (1047)
410 PRK10751 molybdopterin-guanine 96.1 0.0078 2E-07 38.6 4.0 45 17-62 4-51 (170)
411 KOG0055 consensus 96.1 0.0081 2.1E-07 38.4 4.1 26 14-39 378-403 (1228)
412 COG1703 ArgK Putative periplas 96.1 0.033 8.4E-07 34.6 7.2 103 10-119 46-156 (323)
413 CHL00095 clpC Clp protease ATP 96.1 0.0081 2.1E-07 38.4 4.1 21 17-37 541-561 (823)
414 cd01130 VirB11-like_ATPase Typ 96.1 0.007 1.8E-07 38.9 3.7 29 13-41 23-51 (186)
415 TIGR03598 GTPase_YsxC ribosome 96.1 0.0074 1.9E-07 38.7 3.8 42 10-53 14-57 (179)
416 PRK05506 bifunctional sulfate 96.1 0.0066 1.7E-07 39.0 3.5 153 11-197 439-610 (613)
417 pfam02367 UPF0079 Uncharacteri 96.1 0.02 5.1E-07 35.9 6.0 72 12-86 12-99 (123)
418 PRK13764 ATPase; Provisional 96.1 0.0072 1.8E-07 38.8 3.7 69 12-83 258-344 (605)
419 PRK10938 putative molybdenum t 96.1 0.01 2.6E-07 37.8 4.5 29 12-40 283-311 (490)
420 PRK10646 putative ATPase; Prov 96.0 0.017 4.3E-07 36.4 5.6 71 13-86 26-112 (153)
421 TIGR00382 clpX ATP-dependent C 96.0 0.0066 1.7E-07 39.0 3.5 121 18-148 155-301 (452)
422 PRK09183 transposase/IS protei 96.0 0.0047 1.2E-07 39.9 2.7 40 11-50 97-136 (258)
423 cd01876 YihA_EngB The YihA (En 96.0 0.005 1.3E-07 39.8 2.9 35 18-53 2-38 (170)
424 PRK12724 flagellar biosynthesi 96.0 0.0087 2.2E-07 38.2 4.0 26 12-37 220-245 (432)
425 PRK06761 hypothetical protein; 96.0 0.011 2.8E-07 37.6 4.5 58 15-77 2-64 (281)
426 PRK00093 engA GTP-binding prot 96.0 0.0037 9.5E-08 40.6 2.1 51 17-67 3-55 (438)
427 TIGR02788 VirB11 P-type DNA tr 96.0 0.009 2.3E-07 38.2 4.0 33 14-46 157-189 (328)
428 PRK12723 flagellar biosynthesi 96.0 0.013 3.3E-07 37.1 4.8 26 12-37 171-196 (388)
429 TIGR03345 VI_ClpV1 type VI sec 96.0 0.0098 2.5E-07 37.9 4.1 20 18-37 211-230 (852)
430 COG1118 CysA ABC-type sulfate/ 96.0 0.011 2.7E-07 37.7 4.2 32 13-44 26-58 (345)
431 smart00382 AAA ATPases associa 96.0 0.0077 2E-07 38.6 3.5 27 15-41 2-28 (148)
432 KOG0744 consensus 96.0 0.0072 1.8E-07 38.8 3.3 24 16-39 178-201 (423)
433 PRK11034 clpA ATP-dependent Cl 95.9 0.011 2.7E-07 37.7 4.1 21 17-37 490-510 (758)
434 cd02022 DPCK Dephospho-coenzym 95.9 0.01 2.6E-07 37.8 4.0 52 129-184 124-175 (179)
435 COG1123 ATPase components of v 95.9 0.0084 2.2E-07 38.3 3.5 26 13-38 315-340 (539)
436 PRK13768 GTPase; Provisional 95.9 0.0095 2.4E-07 38.0 3.8 23 17-39 4-26 (253)
437 cd01898 Obg Obg subfamily. Th 95.9 0.0072 1.8E-07 38.8 3.1 53 18-71 3-58 (170)
438 PRK03918 chromosome segregatio 95.9 0.0072 1.8E-07 38.8 3.1 22 15-36 23-44 (882)
439 PRK13409 putative ATPase RIL; 95.9 0.0083 2.1E-07 38.4 3.4 51 3-57 87-138 (590)
440 PRK06731 flhF flagellar biosyn 95.9 0.019 4.9E-07 36.0 5.2 26 12-37 72-97 (270)
441 PRK06851 hypothetical protein; 95.9 0.011 2.7E-07 37.7 3.8 25 15-39 31-55 (368)
442 cd03227 ABC_Class2 ABC-type Cl 95.8 0.0089 2.3E-07 38.2 3.4 23 14-36 20-42 (162)
443 PRK04213 GTP-binding protein; 95.8 0.0063 1.6E-07 39.1 2.6 36 17-53 3-38 (195)
444 TIGR03269 met_CoM_red_A2 methy 95.8 0.0093 2.4E-07 38.1 3.5 27 12-38 307-333 (520)
445 TIGR00176 mobB molybdopterin-g 95.8 0.0044 1.1E-07 40.1 1.8 45 17-62 1-51 (165)
446 pfam01202 SKI Shikimate kinase 95.8 0.026 6.7E-07 35.2 5.8 66 128-196 86-157 (158)
447 cd02019 NK Nucleoside/nucleoti 95.8 0.012 3E-07 37.4 3.9 23 17-39 1-23 (69)
448 TIGR02211 LolD_lipo_ex lipopro 95.8 0.0079 2E-07 38.5 3.0 54 13-77 29-83 (221)
449 TIGR00235 udk uridine kinase; 95.8 0.015 3.8E-07 36.8 4.4 168 10-197 5-216 (220)
450 KOG3580 consensus 95.8 0.021 5.4E-07 35.7 5.2 102 93-199 675-779 (1027)
451 COG4618 ArpD ABC-type protease 95.8 0.011 2.7E-07 37.7 3.6 50 15-74 362-411 (580)
452 COG1219 ClpX ATP-dependent pro 95.8 0.016 4E-07 36.6 4.5 92 18-119 100-194 (408)
453 PRK00454 engB GTPase EngB; Rev 95.8 0.0072 1.8E-07 38.8 2.8 41 10-52 20-62 (196)
454 COG1122 CbiO ABC-type cobalt t 95.8 0.0098 2.5E-07 37.9 3.4 26 12-37 27-52 (235)
455 PRK08181 transposase; Validate 95.8 0.0077 2E-07 38.6 2.8 40 11-50 102-141 (269)
456 PRK00635 excinuclease ABC subu 95.8 0.0078 2E-07 38.5 2.9 19 14-32 25-43 (1809)
457 PRK13341 recombination factor 95.8 0.016 4.2E-07 36.5 4.5 34 17-50 54-87 (726)
458 KOG0055 consensus 95.8 0.017 4.2E-07 36.5 4.5 49 14-73 1015-1064(1228)
459 PRK03003 engA GTP-binding prot 95.7 0.0068 1.7E-07 38.9 2.5 51 17-67 40-92 (474)
460 TIGR01420 pilT_fam twitching m 95.7 0.01 2.6E-07 37.8 3.3 50 10-68 123-173 (350)
461 COG0419 SbcC ATPase involved i 95.7 0.01 2.5E-07 37.9 3.3 26 14-39 24-50 (908)
462 pfam03976 PPK2 Polyphosphate k 95.7 0.019 4.8E-07 36.1 4.6 128 12-150 28-158 (229)
463 PTZ00243 ABC transporter; Prov 95.7 0.012 3.1E-07 37.3 3.6 30 12-41 683-712 (1560)
464 COG1763 MobB Molybdopterin-gua 95.7 0.018 4.5E-07 36.3 4.4 48 16-64 3-53 (161)
465 cd01849 YlqF_related_GTPase Yl 95.7 0.009 2.3E-07 38.1 2.9 41 13-53 98-138 (155)
466 cd02025 PanK Pantothenate kina 95.7 0.0092 2.4E-07 38.1 2.9 21 17-37 1-21 (220)
467 pfam00448 SRP54 SRP54-type pro 95.7 0.012 3E-07 37.4 3.5 23 15-37 1-23 (196)
468 COG0410 LivF ABC-type branched 95.7 0.0098 2.5E-07 37.9 3.0 29 12-40 26-54 (237)
469 PRK13549 xylose transporter AT 95.7 0.012 3E-07 37.4 3.4 28 12-39 285-312 (513)
470 PRK08099 nicotinamide-nucleoti 95.6 0.066 1.7E-06 32.6 7.2 24 17-40 233-256 (411)
471 COG1428 Deoxynucleoside kinase 95.6 0.012 3E-07 37.4 3.4 26 15-40 4-29 (216)
472 PRK00440 rfc replication facto 95.6 0.012 3E-07 37.5 3.3 22 18-39 40-61 (318)
473 PRK06217 hypothetical protein; 95.6 0.012 3E-07 37.4 3.3 21 18-38 4-24 (185)
474 PRK06526 transposase; Provisio 95.6 0.0077 2E-07 38.6 2.3 28 10-37 93-120 (254)
475 smart00763 AAA_PrkA PrkA AAA d 95.6 0.0091 2.3E-07 38.1 2.7 31 12-42 75-105 (361)
476 PRK09700 D-allose transporter 95.6 0.012 3E-07 37.4 3.2 28 12-39 286-313 (510)
477 PRK13851 type IV secretion sys 95.6 0.015 3.9E-07 36.7 3.8 43 13-55 160-203 (343)
478 PRK13900 type IV secretion sys 95.6 0.017 4.4E-07 36.4 4.0 40 14-53 159-199 (332)
479 TIGR00618 sbcc exonuclease Sbc 95.6 0.011 2.7E-07 37.7 3.0 21 16-36 31-51 (1063)
480 PRK01156 chromosome segregatio 95.6 0.011 2.9E-07 37.5 3.1 23 14-36 22-44 (895)
481 pfam04670 Gtr1_RagA Gtr1/RagA 95.5 0.095 2.4E-06 31.6 7.7 22 18-39 2-23 (230)
482 PRK10762 D-ribose transporter 95.5 0.014 3.5E-07 37.0 3.4 26 12-37 275-300 (501)
483 pfam01695 IstB IstB-like ATP b 95.5 0.012 3E-07 37.4 3.0 41 10-50 42-82 (178)
484 PRK11288 araG L-arabinose tran 95.5 0.012 3.2E-07 37.2 3.1 26 12-37 276-301 (501)
485 COG1419 FlhF Flagellar GTP-bin 95.5 0.015 3.7E-07 36.8 3.3 27 13-39 201-227 (407)
486 pfam10662 PduV-EutP Ethanolami 95.4 0.012 3.1E-07 37.3 2.9 21 18-38 4-24 (143)
487 cd01881 Obg_like The Obg-like 95.4 0.0057 1.5E-07 39.4 1.2 50 20-70 1-53 (176)
488 PRK11860 bifunctional 3-phosph 95.4 0.019 4.8E-07 36.1 3.8 29 16-45 443-471 (662)
489 cd03116 MobB Molybdenum is an 95.4 0.023 6E-07 35.5 4.2 46 16-62 2-50 (159)
490 cd04160 Arfrp1 Arfrp1 subfamil 95.4 0.015 3.8E-07 36.8 3.1 22 18-39 2-23 (167)
491 COG4525 TauB ABC-type taurine 95.4 0.025 6.5E-07 35.3 4.3 75 13-100 29-106 (259)
492 PRK05537 bifunctional sulfate 95.4 0.022 5.6E-07 35.7 4.0 156 10-198 387-562 (568)
493 PRK13695 putative NTPase; Prov 95.4 0.033 8.5E-07 34.5 4.9 43 17-60 5-50 (174)
494 pfam00004 AAA ATPase family as 95.4 0.019 4.9E-07 36.0 3.7 22 18-39 1-22 (131)
495 cd03115 SRP The signal recogni 95.3 0.029 7.3E-07 34.9 4.5 21 17-37 2-22 (173)
496 TIGR01189 ccmA heme ABC export 95.3 0.015 3.8E-07 36.8 2.9 23 14-36 25-47 (204)
497 COG4559 ABC-type hemin transpo 95.3 0.016 4.1E-07 36.5 3.2 25 14-38 26-50 (259)
498 TIGR00635 ruvB Holliday juncti 95.3 0.016 4.2E-07 36.5 3.1 48 18-68 33-89 (305)
499 PRK05707 DNA polymerase III su 95.3 0.048 1.2E-06 33.5 5.5 25 13-37 17-44 (328)
500 pfam07724 AAA_2 AAA domain (Cd 95.3 0.018 4.6E-07 36.2 3.3 23 17-39 5-27 (168)
No 1
>PRK00300 gmk guanylate kinase; Provisional
Probab=100.00 E-value=0 Score=447.45 Aligned_cols=206 Identities=47% Similarity=0.805 Sum_probs=197.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCC
Q ss_conf 83479729999888999989999999974898-05998211079899854687522237999866530552445456045
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHG 88 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g 88 (222)
++.++|++|||+|||||||+||+++|++.+|. |.+++||||||||+||+||+||||||+++|++++++|.||||++++|
T Consensus 2 ~~~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g 81 (208)
T PRK00300 2 MMMRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFG 81 (208)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECC
T ss_conf 62418838999999988999999999972998689989746889899877896579961999999986283667899838
Q ss_pred CCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 73341321122322101220301452344555312674157898621327999999985201121128999999999999
Q gi|255764507|r 89 NFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYS 168 (222)
Q Consensus 89 ~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~ 168 (222)
|+||||+++|+.++++|++||||+||||++++++.++ ++++|||.|||.++|++||++||. |++++|+.||+.|..
T Consensus 82 ~~YGT~~~~I~~~~~~G~~vildidvqGa~~lk~~~~-~~~~IFI~Pps~e~L~~RL~~Rg~---es~~~I~~Rl~~A~~ 157 (208)
T PRK00300 82 NYYGTPREPVEEALAAGKDVLLEIDWQGAQQVKKKMP-DAVSIFILPPSLEELERRLRGRGT---DSEEVIARRLEAAKE 157 (208)
T ss_pred CCEECCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHH
T ss_conf 7035246999999856998797467899999998597-757999828899999999986389---988899999999999
Q ss_pred HHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998764189799949889999999999999887443457669999999865
Q gi|255764507|r 169 EIKKWEFYDYVLINDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLK 219 (222)
Q Consensus 169 E~~~~~~fD~vIvNddle~a~~~L~~iI~~er~~~~~~~~~~~~~~~~ll~ 219 (222)
|+.+++.|||||+|||+|+|+++|.+||.+|++++.+|..++...|.+||+
T Consensus 158 El~~~~~fD~vIiNddl~~a~~~l~~ii~~e~~~~~~q~~~~~~~~~~~~~ 208 (208)
T PRK00300 158 EIAHASEYDYVIVNDDLETALEELKAIIRAERLRRDRQKQRHAELISELLA 208 (208)
T ss_pred HHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 998885599999899999999999999999860268799999999999729
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=419.21 Aligned_cols=186 Identities=48% Similarity=0.841 Sum_probs=180.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 97299998889999899999999748980599821107989985468752223799986653055244545604573341
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
+|++|||+|||||||+||.++|++.+ ++.++||||||+|||||+||+||||||+++|+++++.|+||||++|+||||||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 86399998998888899999998634-93799985267999987578024757799999987568747887771973248
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32112232210122030145234455531267415789862132799999998520112112899999999999999876
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKW 173 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~ 173 (222)
|+..|..++++|++|+||||+||++++++.++ ++++|||.|||+++|++||..|| +|+++.|+.||..|..|+.++
T Consensus 82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rg---tds~e~I~~Rl~~a~~Ei~~~ 157 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRG---TDSEEVIARRLENAKKEISHA 157 (191)
T ss_pred CHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHH
T ss_conf 68899999866990899985399999997499-96999975999999999997159---997999999999999999888
Q ss_pred HHCCEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4189799949889999999999999887443
Q gi|255764507|r 174 EFYDYVLINDDLENSLSILKSVIEVERIRRH 204 (222)
Q Consensus 174 ~~fD~vIvNddle~a~~~L~~iI~~er~~~~ 204 (222)
..|||||+|||++.|+.+|++||.++|+++.
T Consensus 158 ~~fdyvivNdd~e~a~~~l~~ii~aer~~~~ 188 (191)
T COG0194 158 DEFDYVIVNDDLEKALEELKSIILAERLRRD 188 (191)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7599999895499999999999999887776
No 3
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=100.00 E-value=0 Score=405.46 Aligned_cols=179 Identities=49% Similarity=0.834 Sum_probs=173.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 72999988899998999999997489805998211079899854687522237999866530552445456045733413
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
|+||||+|||||||+||+++|++.+|+|.+++||||||||+||+||+||||||+++|++|+++|+|+||++++||+||||
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEEEECCCCCCCC
T ss_conf 93999989998899999999997689944887044689799877887347850899999986496488767716763574
Q ss_pred CCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21122322101220301452344555312674157898621327999999985201121128999999999999998764
Q gi|255764507|r 95 RDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWE 174 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~ 174 (222)
+++|+.++++|++||+++|++|++++++.+ .++++|||.|||.++|++||.+||. +++++|+.||++|..|+.+++
T Consensus 81 ~~~i~~~~~~gk~vil~id~~G~~~lk~~~-~~~~~IfI~pps~~~L~~RL~~Rg~---e~~~~i~~Rl~~a~~E~~~~~ 156 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKF-PDAVSIFILPPSLEELERRLRKRGT---DSEEVIERRLAKAKKEIAHAD 156 (180)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHH
T ss_conf 799999996099899987899999999758-8648999968899999999996489---998999999999999998774
Q ss_pred HCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 18979994988999999999999
Q gi|255764507|r 175 FYDYVLINDDLENSLSILKSVIE 197 (222)
Q Consensus 175 ~fD~vIvNddle~a~~~L~~iI~ 197 (222)
.||++|+|||+++|+++|.+||.
T Consensus 157 ~fD~vIvNddle~a~~~l~~ii~ 179 (180)
T TIGR03263 157 EFDYVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC
T ss_conf 39999989799999999999971
No 4
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=100.00 E-value=0 Score=385.00 Aligned_cols=180 Identities=41% Similarity=0.676 Sum_probs=172.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 2999988899998999999997489-805998211079899854687522237999866530552445456045733413
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
++|||+|||||||+||+++|++..| .|.+++||||||||+||+||+||||||+++|++|+++|.|+||++++||+|||+
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 81 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAEFNGNYYGTS 81 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 86999898999999999999984866734457655479998787896579965899999875437776264079725640
Q ss_pred CCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21122322101220301452344555312674157898621327999999985201121128999999999999998764
Q gi|255764507|r 95 RDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWE 174 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~ 174 (222)
+++|+.++++|++||+++|++|+.++++.. +++++|||.|||.++|++||+.||. +++++|+.||++|..|+.++.
T Consensus 82 ~~~I~~~~~~g~~vvl~id~~g~~~lk~~~-~~~~~IfI~pps~~~L~~RL~~Rg~---~~~~~i~~Rl~~a~~e~~~~~ 157 (182)
T pfam00625 82 KEAIEQIAESGKICILDVDIQGVKQLRKAE-LSPISVFIKPPSLKVLQRRLKGRGT---EQEEKINKRMEAAEQEFQHYA 157 (182)
T ss_pred HHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHH
T ss_conf 277799986799699997289999998749-5748999938799999999981488---889999999999999973486
Q ss_pred HCCEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 1897999498899999999999998
Q gi|255764507|r 175 FYDYVLINDDLENSLSILKSVIEVE 199 (222)
Q Consensus 175 ~fD~vIvNddle~a~~~L~~iI~~e 199 (222)
.|||+|+|||+|+|+++|.+||.+|
T Consensus 158 ~fD~vIvNddle~a~~~l~~ii~ae 182 (182)
T pfam00625 158 EFDYIIVNDDLDEAYKKLKEILEAE 182 (182)
T ss_pred HCCEEEECCCHHHHHHHHHHHHHCC
T ss_conf 1999998989999999999999739
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=0 Score=375.57 Aligned_cols=182 Identities=40% Similarity=0.649 Sum_probs=172.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 72999988899998999999997489-80599821107989985468752223799986653055244545604573341
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
.++|||+|||||||+||+++|++..| .|.+++||||||||+||++|+||||||+++|++|+++|.|+||++++|++|||
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~flE~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCC
T ss_conf 97799999999999999999986396450577876727998899999636997179999998727417888747877541
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32112232210122030145234455531267415789862132799999998520112112899999999999999876
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKW 173 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~ 173 (222)
++++|..++++|++|++|+|++|+.+|++. ..++++|||.|||.++|++||..||. ++++.|+.|+++|..|+.++
T Consensus 82 ~~~~I~~~~~~g~~~ildi~~~g~~~l~~~-~~~~~~Ifi~pps~e~L~~RL~~Rg~---~~~~~i~~Rl~~a~~e~~~~ 157 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKA-QLYPIVIFIAPPSSEELERRLRGRGT---ETAERIQKRLAAAQKEAQEY 157 (184)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHH-CCCCEEEEEECCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHH
T ss_conf 067899987269869999629999999985-88807999938999999999971699---99999999999999999647
Q ss_pred HHCCEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 418979994988999999999999988
Q gi|255764507|r 174 EFYDYVLINDDLENSLSILKSVIEVER 200 (222)
Q Consensus 174 ~~fD~vIvNddle~a~~~L~~iI~~er 200 (222)
+.||+||+|+|+++|+.+|.+||.+++
T Consensus 158 ~~fd~vIvN~dl~~a~~~l~~iI~~e~ 184 (184)
T smart00072 158 HLFDYVIVNDDLEDAYEELKEILEAEQ 184 (184)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 339999989899999999999998559
No 6
>KOG0609 consensus
Probab=100.00 E-value=0 Score=327.24 Aligned_cols=200 Identities=27% Similarity=0.456 Sum_probs=172.0
Q ss_pred CCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEE
Q ss_conf 87300048347972999988899998999999997489-80599821107989985468752223799986653055244
Q gi|255764507|r 3 RDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFI 81 (222)
Q Consensus 3 ~~~~~~~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~Fl 81 (222)
+..+..++. .+.+.+||+||+|+|+..|+++|+..+| +|+.+||||||+||++|+||++|||||+++|+++|.+|+|+
T Consensus 329 YEEV~~~~~-~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~l 407 (542)
T KOG0609 329 YEEVVRYPP-FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFL 407 (542)
T ss_pred HHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCE
T ss_conf 888865414-6653289977766366999999986386555667877677988777798542351048776556518855
Q ss_pred EEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCC----CCCHHHH
Q ss_conf 545604573341321122322101220301452344555312674157898621327999999985201----1211289
Q gi|255764507|r 82 EKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAK----KNQEDKE 157 (222)
Q Consensus 82 E~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~----~~~d~~e 157 (222)
||++|.||+|||++++|+.++++||+||||+.||+++.||.. .+.|++|||.||+++++++-...-.. .-.-+++
T Consensus 408 E~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~-Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~ 486 (542)
T KOG0609 408 EYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTA-EFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDE 486 (542)
T ss_pred ECCCCHHCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 247502020666089999999738778874477775323330-3564499835997066788765303566545457879
Q ss_pred HHHHHHH-HHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999-999999876418979994988999999999999988744345
Q gi|255764507|r 158 KVQLRLQ-NAYSEIKKWEFYDYVLINDDLENSLSILKSVIEVERIRRHRL 206 (222)
Q Consensus 158 ~i~~Rl~-~a~~E~~~~~~fD~vIvNddle~a~~~L~~iI~~er~~~~~~ 206 (222)
.++..+. ++..|..|+++||.+|+|+|++.|+++|..+| ++++.++|
T Consensus 487 ~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~i--ekl~tepq 534 (542)
T KOG0609 487 DLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAI--EKLRTEPQ 534 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHH--HHHCCCCC
T ss_conf 9999999999999873000238997474788999999999--97404883
No 7
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=100.00 E-value=0 Score=316.57 Aligned_cols=175 Identities=21% Similarity=0.273 Sum_probs=156.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 7299998889999899999999748-980599821107989985468752223799986653055244545604573341
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
|+||||+|||||||+||+++|++.. +.+.+++|+||||++. +|+||||+|+++|++++++|.|+|||++||++|||
T Consensus 2 G~LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~e~---~g~dy~fvs~eeF~~~i~~g~F~~~w~~~g~~YG~ 78 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA---GSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCC---CCCCCEECCHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 709999899869999999999844899889998723789999---99682887999999999779829999866956670
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32112232210122030145234455531267415789862132799999998520112112899999999999999876
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKW 173 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~ 173 (222)
+.+ |+..+++|++|+++++++|+.++++.++. .+.+|+.|||.++|++||++||. |+++.|.+||++|.. .
T Consensus 79 ~~~-v~~~l~~G~dVi~~g~~~~~~~~~~~~~~-~~~~~~i~ps~~~L~~RL~~RGt---Es~e~I~~RL~~A~~----~ 149 (184)
T PRK10078 79 GIE-IDLWLHAGFDVVVNGSRAHLPQARARYQS-ALLPVCLQVSPEILRQRLENRGR---ENASEINARLARAAR----Y 149 (184)
T ss_pred CHH-HHHHHHCCCEEEEECHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHHCCC---CCHHHHHHHHHHHCC----C
T ss_conf 789-99999749949995179899999986798-58999957999999999997299---999999999996121----5
Q ss_pred HHCCEEEECCC--HHHHHHHHHHHHHHHHH
Q ss_conf 41897999498--89999999999999887
Q gi|255764507|r 174 EFYDYVLINDD--LENSLSILKSVIEVERI 201 (222)
Q Consensus 174 ~~fD~vIvNdd--le~a~~~L~~iI~~er~ 201 (222)
..||++|||+| +++|+++|.+||.+++.
T Consensus 150 ~~~d~~vInnDg~le~av~~l~~ii~~~~~ 179 (184)
T PRK10078 150 QPQDCHTLNNDGSLRQSVDTLLTLLHQKEK 179 (184)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 788999998998899999999999999874
No 8
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=100.00 E-value=6.8e-43 Score=295.05 Aligned_cols=131 Identities=44% Similarity=0.722 Sum_probs=123.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEEC
Q ss_conf 999988899998999999997489-8059982110798998546875222379998665305524454560457334132
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLR 95 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~ 95 (222)
||||+|||||||+||+++|++..| .|.+++||||||||+||+||+||||||+++|++|+++|+|+||++++|++|||++
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~E~~G~dY~Fvs~~~F~~~i~~g~f~E~~~~~g~~YGt~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCEEEEEEEECCCCCCCCH
T ss_conf 99999999889999999998519877687566037899888778967898679999999866914999999880662789
Q ss_pred CHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 11223221012203014523445553126741578986213279999999852
Q gi|255764507|r 96 DPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLR 148 (222)
Q Consensus 96 ~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R 148 (222)
++|+.++++|++||+++|+||++++++. .+++++|||.|||.+.+..+|...
T Consensus 81 ~~I~~~~~~G~~vil~id~~g~~~lk~~-~~~~~~IFI~PP~~~i~~~~~~~~ 132 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKS-YPDAVSIFILPPDYVIVNDDLEKA 132 (137)
T ss_pred HHHHHHHHCCCEEEEEEEHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 9999999639949999748999999970-998199999790968999999999
No 9
>KOG0707 consensus
Probab=100.00 E-value=4e-42 Score=290.13 Aligned_cols=182 Identities=36% Similarity=0.536 Sum_probs=171.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEEC
Q ss_conf 9999888999989999999974898-059982110798998546875222379998665305524454560457334132
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLR 95 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~-~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~ 95 (222)
-+||+||||+||+||.++|++..+. |.++||||||.||+||++|+||||++.++|+.|+.+++|+||+.++||+|||++
T Consensus 39 ~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGtsi 118 (231)
T KOG0707 39 PIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTSI 118 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 27985887754357999999873776137745777899860116774433367899988600025566664366577229
Q ss_pred CHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11223221012203014523445553126741578986213279999999852011211289999999999999987641
Q gi|255764507|r 96 DPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEF 175 (222)
Q Consensus 96 ~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~~ 175 (222)
+++......|+.|++|||.||++.++.. ..+++.||+.|||...+++||+.|| +|+++.+.+|+++|+.|+.+...
T Consensus 119 ~av~~~~~~gk~~ildId~qg~~~i~~~-~~~~i~i~~~pps~~~~e~rl~~rg---te~~~~l~~r~~sa~~e~~~~~~ 194 (231)
T KOG0707 119 AAVQRLMLSGKVCILDIDLQGVQPIRAT-SLDAIYIFIKPPSIKILEERLRARG---TETEESLLKRLKSAEEEFEILEN 194 (231)
T ss_pred HHHHHHHHCCCCCEEEHHHCCCEEEECC-CCCEEEEEECCCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999997359820310222071332058-8765789822886015888754147---40199999998865653202347
Q ss_pred ---CCEEEEC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf ---8979994-98899999999999998874
Q gi|255764507|r 176 ---YDYVLIN-DDLENSLSILKSVIEVERIR 202 (222)
Q Consensus 176 ---fD~vIvN-ddle~a~~~L~~iI~~er~~ 202 (222)
||++++| +++++|+.++..++..+...
T Consensus 195 ~g~~d~~~~ns~~lee~~kel~~~~~~~~~~ 225 (231)
T KOG0707 195 SGSFDLVIVNSDRLEEAYKELEIFISSDDKE 225 (231)
T ss_pred CCCCCCEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7634521217886245455543234677776
No 10
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=99.96 E-value=9.3e-29 Score=204.55 Aligned_cols=174 Identities=23% Similarity=0.270 Sum_probs=145.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH---HCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 72999988899998999999997---489805998211079899854687522237999866530552445456045733
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLK---CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~---~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
|++|+++||||||||||+....+ ..|++.|+..|.|||-..| |+|+-=+|.+||+.+...|.|.-+|+.||..|
T Consensus 1 G~li~vvGPSGaGKDtLl~~AR~~l~~~~r~~F~rRvITR~a~Ag---gEnH~Als~~EF~~~~~~G~FAl~W~AHGL~Y 77 (183)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPADAG---GENHDALSTEEFDAREDGGAFALSWQAHGLSY 77 (183)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC---CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 937899707788677899999997048996588312774375224---66764047789999971898189861367435
Q ss_pred EEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 4132112232210122030145234455531267415789862132799999998520112112899999999999999-
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEI- 170 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~- 170 (222)
|++.+ |+.++.+|.+||.+..=.-..+++..|+ ++.+|.|.+| .|+|..||..||+ |+.++|.+||.++..-.
T Consensus 78 GiP~e-id~wL~~G~~Vv~NGSRa~Lp~ar~rYp-~L~~V~Ita~-~dVLa~RL~~RgR---E~~~~I~~RL~Rs~~~~~ 151 (183)
T TIGR02322 78 GIPVE-IDQWLEAGDVVVVNGSRAVLPEARQRYP-NLLVVNITAS-PDVLAQRLAARGR---ESAEEIEERLARSARFAG 151 (183)
T ss_pred CCCHH-HHHHHHCCCEEEEECHHHHHHHHHHHHH-CCEEEEEECC-HHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCC
T ss_conf 78303-7878754998999752889999987432-4602787458-1289999997589---898899999887753110
Q ss_pred -HHHHHCCEEE-ECC-CHHHHHHHHHHHHH
Q ss_conf -8764189799-949-88999999999999
Q gi|255764507|r 171 -KKWEFYDYVL-IND-DLENSLSILKSVIE 197 (222)
Q Consensus 171 -~~~~~fD~vI-vNd-dle~a~~~L~~iI~ 197 (222)
.-...+|.+. .|+ .++.|.+.|..+|.
T Consensus 152 dll~~~~dv~~i~NsG~~~~ag~~L~~ll~ 181 (183)
T TIGR02322 152 DLLLEPADVTTIDNSGSLEVAGETLLRLLR 181 (183)
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 220059872798468027899999999985
No 11
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4e-23 Score=168.46 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=140.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 972999988899998999999997---48980599821107989985468752223799986653055244545604573
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK---CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~---~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
.|.+|+++||||+|||||+..+.. ..|++.++..+.|||..+| |+|+--+|..+|..+..+|.|.-+|+.||.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC---CCCCCCCCHHHHHHHHHCCCEEEEEHHCCCC
T ss_conf 7549999888877767799999987266874599999864667777---6554345889999885357626773104822
Q ss_pred EEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 34132112232210122030145234455531267415789862132799999998520112112899999999999999
Q gi|255764507|r 91 YGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEI 170 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~ 170 (222)
||++.+ |+.++..|.++|.+..-.-.-.+++.|+ ...++-|.+ +.++|.+||..||+ |+.++|..||.++...
T Consensus 81 Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arrry~-~Llvv~ita-~p~VLaqRL~~RGR---Es~eeI~aRL~R~a~~- 153 (192)
T COG3709 81 YGIPAE-IDLWLAAGDVVLVNGSRAVLPQARRRYP-QLLVVCITA-SPEVLAQRLAERGR---ESREEILARLARAARY- 153 (192)
T ss_pred CCCCHH-HHHHHHCCCEEEEECCHHHHHHHHHHHH-CCEEEEEEC-CHHHHHHHHHHHCC---CCHHHHHHHHHHHCCC-
T ss_conf 257165-9999857988998262766088998600-323699724-87899999998654---7999999999751434-
Q ss_pred HHHHHCCEEEECC--CHHHHHHHHHHHHHHH
Q ss_conf 8764189799949--8899999999999998
Q gi|255764507|r 171 KKWEFYDYVLIND--DLENSLSILKSVIEVE 199 (222)
Q Consensus 171 ~~~~~fD~vIvNd--dle~a~~~L~~iI~~e 199 (222)
...-.|.+-+|+ .++.|.+++...+..+
T Consensus 154 -~~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 154 -TAGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred -CCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf -358998689738986778999999999751
No 12
>KOG0708 consensus
Probab=99.75 E-value=9.2e-18 Score=134.12 Aligned_cols=163 Identities=22% Similarity=0.291 Sum_probs=131.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEE
Q ss_conf 972999988899998999999997489-8059982110798998546875222379998665305524454560457334
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYG 92 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YG 92 (222)
|| |+|.|| =++-|.+.|+..+| .|..+++|||||. +++|+..++.+.|+++++++|++||
T Consensus 188 RP--Vlilg~---~~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~~ 248 (359)
T KOG0708 188 RP--VLILGP---LLDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLYG 248 (359)
T ss_pred CC--EEECCC---HHHHHHHHHHHHHHCCCCCCCHHHHCCC--------------HHHHHHHCCCCCEEEECCCCCCCCE
T ss_conf 72--675042---6899999998742010240516650600--------------8876231245751210334797322
Q ss_pred EECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 13211223221012203014523445553126741578986213279999999852011211289999999999999987
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKK 172 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~ 172 (222)
|+..+|..+.++|+.||||+...|++.|... ..-|++|||.|-|.+.++.+- +... .+.+++.-.| +.+.|..+
T Consensus 249 tsv~si~~va~k~~HCiLdv~~~ai~rLq~~-~IyPIvIfIr~ks~~~i~e~~--~~~t-~~~ake~~e~--a~klEqe~ 322 (359)
T KOG0708 249 TSVASIREVAEKGKHCLLDVGGDAIRRLQRN-QIYPIVIFIRVKSKKQIKERN--LKIT-GEQAKELLER--ARKLEQEL 322 (359)
T ss_pred EHHHHHHHHHCCCCCEEEECCCCHHHHHHHC-CEECEEEEEEECHHHHHHHHH--CCCC-HHHHHHHHHH--HHHHHHHH
T ss_conf 3588799986279862774273458788866-510369999723278899876--1356-6889999999--99767656
Q ss_pred HHHCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 64189799949889999999999999887
Q gi|255764507|r 173 WEFYDYVLINDDLENSLSILKSVIEVERI 201 (222)
Q Consensus 173 ~~~fD~vIvNddle~a~~~L~~iI~~er~ 201 (222)
+.+|-.+|--+.+++.+.+++.+|.-|.-
T Consensus 323 ~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~ 351 (359)
T KOG0708 323 DRYFTLVVQGGSLEELLSQVKDIIEDEQK 351 (359)
T ss_pred HHCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 20617998255479999999999987428
No 13
>PRK05480 uridine kinase; Provisional
Probab=98.90 E-value=5.3e-08 Score=71.63 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=88.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEE-EEEEE----EECCCCCCCCCCCCCCCCCHHHHH--------HHHH
Q ss_conf 8347972999988899998999999997489805-99821----107989985468752223799986--------6530
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFE-MSISV----TTRVRRPNEVDGKDYYFLSLSRFN--------ELKK 76 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~-~~v~~----TTR~~R~gE~~G~dY~Fvs~~~F~--------~~i~ 76 (222)
+|++||.+|-|+|+|||||||+++.|.+..+.-. .+++. -.+.-.+.+..| .+.|=..+.|+ +...
T Consensus 1 ~~~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Yy~~~~~~~~~e~~-~~nfD~P~a~d~~ll~~~L~~L~ 79 (209)
T PRK05480 1 MMMKQPIIIGIAGGSGSGKTTVASTIYEELGDESIAVISQDSYYKDQSHLSMEERV-KTNYDHPDAFDHDLLIEHLKALK 79 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHC-CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99889889999899977899999999998086875999554412473407886812-36878826766999999999997
Q ss_pred CCEEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHH-----HHHCCCCCHHHHHHHCCCHHHHHHHHH----H
Q ss_conf 5524454560457334132112232210122030145234455-----531267415789862132799999998----5
Q gi|255764507|r 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQN-----LHKQMGSNVLSFFILPPTMQELCSRLS----L 147 (222)
Q Consensus 77 ~~~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~-----l~~~~~~~~~~IFI~pps~e~L~~RL~----~ 147 (222)
+|+=++. ..+++-=|+.... ...+....++|++ |... ++..+ + +.|||.+|.--.|.+|+. .
T Consensus 80 ~G~~v~~-P~Ydf~t~~r~~~-~~~i~~~~iiIvE----Gi~~l~~~~lr~~~--D-lkIfid~~~d~rl~RRi~RD~~e 150 (209)
T PRK05480 80 AGKAIEI-PVYDYTEHTRSKE-TIHVEPKDVIILE----GILLLEDERLRDLM--D-IKIFVDTPLDIRLIRRLKRDVNE 150 (209)
T ss_pred CCCCCCC-CCCCCCCCCCCCC-EEEECCCCEEEEE----CHHHCCCHHHHHHH--C-EEEEEECCHHHHHHHHHHHHHHH
T ss_conf 4998756-7544556655786-3896698769993----45640678788652--6-57999667778999999978999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHH-----HHHHHHCCEEEECC-CHHHHHHHHHHHHH
Q ss_conf 2011211289999999999999-----98764189799949-88999999999999
Q gi|255764507|r 148 RAKKNQEDKEKVQLRLQNAYSE-----IKKWEFYDYVLIND-DLENSLSILKSVIE 197 (222)
Q Consensus 148 R~~~~~d~~e~i~~Rl~~a~~E-----~~~~~~fD~vIvNd-dle~a~~~L~~iI~ 197 (222)
||+ +-++.+++-....+-. ..+.++.|.||-+. +-+.|.+-|..-|.
T Consensus 151 RGr---~~e~vi~q~~~~v~p~~~~yI~P~k~~ADlII~~~~~~~va~~~i~~~i~ 203 (209)
T PRK05480 151 RGR---SLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIR 203 (209)
T ss_pred HCC---CHHHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 788---99999999999765769976845274240898899964599999999999
No 14
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.59 E-value=9.8e-08 Score=69.93 Aligned_cols=172 Identities=22% Similarity=0.299 Sum_probs=87.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCE--E---EEEEECCC
Q ss_conf 972999988899998999999997489805998211079899854687522237999866530552--4---45456045
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANA--F---IEKAEVHG 88 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~--F---lE~~~~~g 88 (222)
||++|++-|+-||||+|.++.|.+....-+..+ +.||.|-.... | +.....+.... + .+.-.+.-
T Consensus 2 kG~fIviEGiDGsGKsTq~~~L~~~L~~~g~~v-~~t~eP~~t~~-g--------~~ir~~~~~~~~~~~~~~~~lLf~a 71 (204)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLAERLEEQGRDV-VFTREPGGTPL-G--------EKLRELLLDPNEPMDDKTELLLFLA 71 (204)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCCH-H--------HHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 831999988999989999999999999679978-99869999806-9--------9999998277767998999999999
Q ss_pred CCEEEECCHHHHHHHCCCCEEECC------CHHHH---------HHHHHCC----CCCHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 733413211223221012203014------52344---------5553126----7415789862132799999998520
Q gi|255764507|r 89 NFYGTLRDPIEETISKGKDMLFDI------DWQGA---------QNLHKQM----GSNVLSFFILPPTMQELCSRLSLRA 149 (222)
Q Consensus 89 ~~YGt~~~~i~~~l~~g~~~ildi------d~qG~---------~~l~~~~----~~~~~~IFI~pps~e~L~~RL~~R~ 149 (222)
..+-.....|...+++|++||+|= -.||+ ..+.... ..+ ++||+..| .++..+|+..|+
T Consensus 72 dR~~~~~~~I~p~L~~g~iVI~DRy~~S~~aYqg~~~~~~~~~i~~l~~~~~~~~~PD-l~i~Ldv~-~e~~~~Ri~~R~ 149 (204)
T PRK00698 72 ARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLAALNRFALGGFRPD-LTLYLDVP-PEVGLARIAARG 149 (204)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC-EEEEEECC-HHHHHHHHHHCC
T ss_conf 9999999999988836998998364050999998607999999999998872799998-58998179-999999998379
Q ss_pred CCCCHHHH--HHHHHHHHHHHHHHHHHHCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 11211289--9999999999999876418979994--988999999999999
Q gi|255764507|r 150 KKNQEDKE--KVQLRLQNAYSEIKKWEFYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 150 ~~~~d~~e--~i~~Rl~~a~~E~~~~~~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
..+.-+.+ +...++..+..++.......+++++ .+.++..+++..+|.
T Consensus 150 ~~dr~e~~~~~~~~kv~~~Y~~l~~~~~~~~~~IDa~~~~eeV~~~I~~~i~ 201 (204)
T PRK00698 150 ELDRIEQEGLDFFERVREGYLELAAADPERIVVIDASQSLEEVHEDILAVLK 201 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8642015009999999999999998588968998499999999999999999
No 15
>PRK08356 hypothetical protein; Provisional
Probab=98.58 E-value=7.1e-08 Score=70.84 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEE-EE--------EEECC-------CCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 7299998889999899999999748980599-82--------11079-------89985468752223799986653055
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMS-IS--------VTTRV-------RRPNEVDGKDYYFLSLSRFNELKKAN 78 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~-v~--------~TTR~-------~R~gE~~G~dY~Fvs~~~F~~~i~~~ 78 (222)
.++|.|+|..||||+|+++.| +.. +|... -+ +-|++ ++.+| .|++.+.+. +
T Consensus 5 kmIIgitG~~gSGK~tva~~l-~~~-G~~~~s~sd~lrd~~~~~~~~~~~~~e~~~~~e--------~tre~l~~~---~ 71 (195)
T PRK08356 5 KMIVGIAGKIAAGKTTVAKFL-EEL-GFCRISCSEPLIDILTGNVSDYSWVPEVPFKGE--------PTRENLIEL---G 71 (195)
T ss_pred EEEEEEECCCCCCHHHHHHHH-HHC-CCEEEECCHHHHHHHHCCCCCCCCHHHHHHCCC--------CCHHHHHHH---H
T ss_conf 269998589988789999999-986-992884227899998402320001155551479--------988999999---9
Q ss_pred EEEEEEECCCCCEEEECCHHHHHHHCCCCEEEC-C-CHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 244545604573341321122322101220301-4-52344555312674157898621327999999985201121128
Q gi|255764507|r 79 AFIEKAEVHGNFYGTLRDPIEETISKGKDMLFD-I-DWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDK 156 (222)
Q Consensus 79 ~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ild-i-d~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~ 156 (222)
..| -+-+|.-+ -..-+...+..++.+|+| + .|.=+..+++. +. ..|.|.+| .+.--+||..|++..-...
T Consensus 72 ~~L--R~~~G~~i--~a~~~~~~i~~~~~vVIdgiR~~~Eve~lk~~-~~--~lI~V~A~-~~~R~eRl~~Rgr~~D~~~ 143 (195)
T PRK08356 72 RYL--KEKYGEDI--LIRLAVDKLRHCKNIAIDGVRSRGEVEAIKRM-GG--KVIYVEAK-PEIRFERLRRRGAEKDRGI 143 (195)
T ss_pred HHH--HHHHCCHH--HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHC-CC--EEEEEECC-HHHHHHHHHHCCCCCCCCC
T ss_conf 999--99869258--99999999744897899489988999999965-99--79999677-8789999997689888650
Q ss_pred HHHHHHHHHHHHHHH-H-----HHHCCEEEECC-CHHHHHHHHHHHHH
Q ss_conf 999999999999998-7-----64189799949-88999999999999
Q gi|255764507|r 157 EKVQLRLQNAYSEIK-K-----WEFYDYVLIND-DLENSLSILKSVIE 197 (222)
Q Consensus 157 e~i~~Rl~~a~~E~~-~-----~~~fD~vIvNd-dle~a~~~L~~iI~ 197 (222)
...+.-++....|.. + ....||+|+|+ ++|+-.+++..||.
T Consensus 144 ~s~e~fl~~d~~e~~~~~~~~~i~~ADy~I~N~gtleel~~~i~~il~ 191 (195)
T PRK08356 144 KSLEDLLKFDEWEEKLYQTTKLKDKADYVIVNEGTLEELRKKVEEILR 191 (195)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 429999986488886048788998799999829989999999999999
No 16
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.54 E-value=7.4e-08 Score=70.72 Aligned_cols=163 Identities=18% Similarity=0.297 Sum_probs=99.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 2999988899998999999997489805998211079--89985468752223799986653055244545604573341
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRV--RRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~--~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
.+|||.|| ||||.|.|.++.+.++..+++-=--=|. .|.|-.+| +-.+.+|++|.-+=-. +
T Consensus 1 V~FvLGGP-GSGKGTQCa~Iv~~f~~~HLSAGDLLR~E~~R~GSe~g--------~lI~~~IkeG~IVPs~--------V 63 (189)
T TIGR01359 1 VVFVLGGP-GSGKGTQCAKIVENFGYVHLSAGDLLRAEIKREGSENG--------ELIESYIKEGKIVPSE--------V 63 (189)
T ss_pred CEEEECCC-CCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCC--------CHHHHHHHCCCEEHHE--------E
T ss_conf 97763698-98756789999985394688074788998610478885--------0377441158311122--------3
Q ss_pred ECCHHHHHHHCCC--CEEECCC--------HHHHHH-H-HHCCCCCH-HHHHHHCCCHHHHHHHHHHHCCC---CCHHHH
Q ss_conf 3211223221012--2030145--------234455-5-31267415-78986213279999999852011---211289
Q gi|255764507|r 94 LRDPIEETISKGK--DMLFDID--------WQGAQN-L-HKQMGSNV-LSFFILPPTMQELCSRLSLRAKK---NQEDKE 157 (222)
Q Consensus 94 ~~~~i~~~l~~g~--~~ildid--------~qG~~~-l-~~~~~~~~-~~IFI~pps~e~L~~RL~~R~~~---~~d~~e 157 (222)
..+=+.+++.+.. .=.+=|| -+|-.+ + ......+. +++|+..| .+++.+|+.+|+.. .-|..+
T Consensus 64 Tv~LL~kai~~~~W~~~~FLIDGFPRN~eN~~~W~~~~P~~kv~~~~alVlF~dC~-e~~m~~R~l~Rg~~SGR~DDN~e 142 (189)
T TIGR01359 64 TVELLKKAIKEDGWSSKKFLIDGFPRNEENLEAWEKLMPDNKVNVKFALVLFFDCP-EEVMIKRLLKRGQTSGRVDDNIE 142 (189)
T ss_pred EHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECC-CCEEEEEECCCCCCCCCCCCCHH
T ss_conf 24588877763156788236625788887888898617877612026789998679-71476443147894786107177
Q ss_pred HHHHHHHHHHHH----HHHHHHCCEEE-EC--CCHHHHHHHHHHHH
Q ss_conf 999999999999----98764189799-94--98899999999999
Q gi|255764507|r 158 KVQLRLQNAYSE----IKKWEFYDYVL-IN--DDLENSLSILKSVI 196 (222)
Q Consensus 158 ~i~~Rl~~a~~E----~~~~~~fD~vI-vN--ddle~a~~~L~~iI 196 (222)
.|.+|+..+..+ +.|+...+-+. || .+.|+-++++..+.
T Consensus 143 sl~KR~~~y~~~t~piIe~f~~~~kv~~i~a~~~ve~Vf~~v~~~f 188 (189)
T TIGR01359 143 SLKKRFRTYNEETLPIIEYFENKGKVKEINAEGSVEEVFEDVEKIF 188 (189)
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 8888866540168302100002795798279999889999999970
No 17
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.54 E-value=2.1e-06 Score=61.44 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=84.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEEC
Q ss_conf 29999888999989999999974898059982110798998546875222379998665305524454560457334132
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLR 95 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~ 95 (222)
++|+|+|++|+||+|++++|. .. ++.. ++-.+|-. +.|.+.++-+-. ..|=...
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l-g~~~---------------------i~l~el~~--e~~~~~~~de~r-~s~~vD~ 54 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL-GYKV---------------------IELNELAK--ENGLYTEYDELR-KSVIVDV 54 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HH-CCCE---------------------EEHHHHHH--HCCCEECCCCCC-CEEEEEH
T ss_conf 937993799986687999999-82-9846---------------------61999998--669711437766-1588667
Q ss_pred CHHHHHHH---CCCCEEECCCHHHHHHHHHCCC-CCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 11223221---0122030145234455531267-4157898621327999999985201121128999999999999998
Q gi|255764507|r 96 DPIEETIS---KGKDMLFDIDWQGAQNLHKQMG-SNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIK 171 (222)
Q Consensus 96 ~~i~~~l~---~g~~~ildid~qG~~~l~~~~~-~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~ 171 (222)
+.+...+. ....+|++-+..+ .++ .+.++|.=+ ..+.|.+||+.|| -++++|..-+.+-....-
T Consensus 55 d~~~~~le~~~~~~~~Ivd~H~~h------l~~~~dlVvVLR~--~p~~L~~RLk~RG----y~~eKI~ENveAEi~~vi 122 (180)
T COG1936 55 DKLRKRLEELLREGSGIVDSHLSH------LLPDCDLVVVLRA--DPEVLYERLKGRG----YSEEKILENVEAEILDVI 122 (180)
T ss_pred HHHHHHHHHHHCCCCEEEECHHHH------CCCCCCEEEEECC--CHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHH
T ss_conf 999988888750588476126662------1787888999718--9899999998769----987898877999999999
Q ss_pred H---HHHCCEEEE----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7---641897999----49889999999999999887443457669999
Q gi|255764507|r 172 K---WEFYDYVLI----NDDLENSLSILKSVIEVERIRRHRLKNGIGGF 213 (222)
Q Consensus 172 ~---~~~fD~vIv----Nddle~a~~~L~~iI~~er~~~~~~~~~~~~~ 213 (222)
. ...||-++. |.+.+++.+++.+||...+....-...+...+
T Consensus 123 ~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~~~~~~~g~vd~~~~~ 171 (180)
T COG1936 123 LIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGGGRKKRVGVVDWLEEL 171 (180)
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 9999973476499978999999999999999703345788875324566
No 18
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.53 E-value=1.5e-06 Score=62.41 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=87.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 47972999988899998999999997489805998211079899854687522237999866530552445456045733
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
++-+.+||++|+||+||+|+.+.|.+.. ++.| .||=||| +.+.-++|- +|.=|.-.- .--+.
T Consensus 5 ~~~~~iiVVMGVsGsGKSTig~~LA~~l-~~~f-------------iegDdfH--p~~Ni~KM~-~GiPLtD~D-R~pWL 66 (177)
T PRK11545 5 NHDHHIYVLMGVSGSGKSAVASAVAHQL-HAAF-------------LDGDFLH--PRCNIEKMA-SGEPLNDDD-RKPWL 66 (177)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH-CCCE-------------ECCCCCC--CHHHHHHHH-CCCCCCHHH-HHHHH
T ss_conf 7887599998479899999999999981-9985-------------5365558--999999862-899998688-89999
Q ss_pred EEECCHHHHHHHCCCCEEECCCH--HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 41321122322101220301452--3445553126741578986213279999999852011211289999999999999
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDW--QGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSE 169 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~--qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E 169 (222)
..-.+.+......|..+|+-+.. ...+.+......++.+||+.. +.+.+.+|+..|.-.-.. ...+..-++. -|
T Consensus 67 ~~l~~~~~~~~~~~~~~VlaCSALKr~YRd~Lr~~~~~~~fv~L~g-~~~~i~~Rl~~R~~HFmp-~~LL~SQf~t--LE 142 (177)
T PRK11545 67 QALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFK-TQMLVTQFET--LQ 142 (177)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECC-CHHHHHHHHHHCCCCCCC-HHHHHHHHHH--HC
T ss_conf 9999999999726996699870111999999980699759999729-999999999746468998-7899989998--17
Q ss_pred HHHHHHCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 98764189799949--88999999999999
Q gi|255764507|r 170 IKKWEFYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 170 ~~~~~~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
.....+-|.+.++- .+++-++++.+-|.
T Consensus 143 ~P~~~E~~~~~vdi~~~~e~iv~~il~~l~ 172 (177)
T PRK11545 143 EPGADETDVLVVDIDQPLEGVVASTIEVIK 172 (177)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 999888986999789999999999999997
No 19
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.47 E-value=2e-06 Score=61.58 Aligned_cols=180 Identities=21% Similarity=0.255 Sum_probs=92.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE-----CCCCCCCCCCCCCCCCCHHHHHHHHHC--C------
Q ss_conf 479729999888999989999999974898059982110-----798998546875222379998665305--5------
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT-----RVRRPNEVDGKDYYFLSLSRFNELKKA--N------ 78 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT-----R~~R~gE~~G~dY~Fvs~~~F~~~i~~--~------ 78 (222)
.++|.+|+|+|+||+||+||+-.|... -++..+++--| |.-.+.|.+-. -|+-|=+.-+.+... +
T Consensus 89 ~~~pliILigGtsGvGKSTlA~~LA~r-LgI~~visTD~IREVmR~~~~~el~P~-Lh~SSy~Awk~l~~~~~~~~~~I~ 166 (306)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASR-LGIRSVIGTDSIREVMRKIISKELLPT-LHESSYTAWKSLRRPPWEEPDHIL 166 (306)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-HCCCEEECCHHHHHHHHHCCCCCCCCH-HHCCCHHHHHCCCCCCCCCHHHHH
T ss_conf 699879998589988789999999997-098834222169999985248301751-322751310023678778657999
Q ss_pred EEEEEEECCCCCEEEECCHHHHHHHCCCCEEEC---CCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHH
Q ss_conf 244545604573341321122322101220301---45234455531267415789862132799999998520112112
Q gi|255764507|r 79 AFIEKAEVHGNFYGTLRDPIEETISKGKDMLFD---IDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQED 155 (222)
Q Consensus 79 ~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ild---id~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~ 155 (222)
.|.++.+. -.=|+ ..-|+.++..|.++|++ +.|.=....... ..+++++.+..++.+..++|+..|++.+..+
T Consensus 167 Gf~~Q~~~--V~~gI-~aiI~Ra~~eg~slIIEGVHlvP~~i~~~~~~-~~~vi~fll~i~dEe~H~~RF~~Ra~~~~R~ 242 (306)
T PRK04220 167 GFERHVEP--VLVGV-EAVIERALKEGISVIIEGVHIVPGFIKEKYLN-MPNVFMFVLTLSDEETHKARFYARARVSKRP 242 (306)
T ss_pred HHHHHHHH--HHHHH-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC-CCCEEEEEEEECCHHHHHHHHHHHCCCCCCC
T ss_conf 99999999--99999-99999999729968998430377887777643-8838999999788899999999850447898
Q ss_pred HHHHHHHHHHHHH--H-----HHHHHHCCE-EEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999--9-----987641897-99949889999999999999887
Q gi|255764507|r 156 KEKVQLRLQNAYS--E-----IKKWEFYDY-VLINDDLENSLSILKSVIEVERI 201 (222)
Q Consensus 156 ~e~i~~Rl~~a~~--E-----~~~~~~fD~-vIvNddle~a~~~L~~iI~~er~ 201 (222)
.+ +.++.... . +..+..++. +|.|.|+++|+..+.++|. +|.
T Consensus 243 ~~---rYl~~f~~IR~IQ~yLv~~A~~~~vPiI~N~~id~tv~~i~~~i~-~r~ 292 (306)
T PRK04220 243 AE---RYLKHFDEIREIQDYIVEKAKEHGVPVIENVSIEETVDKILEIIT-ERL 292 (306)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHH-HHH
T ss_conf 78---999979999999999999988809981068668999999999999-999
No 20
>PRK06696 uridine kinase; Validated
Probab=98.46 E-value=8.9e-07 Score=63.78 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=76.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEEE-----ECCCC--CCCCCCCCCCC--CCHHHHHH-----HHH
Q ss_conf 7972999988899998999999997489--805998211-----07989--98546875222--37999866-----530
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQ--NFEMSISVT-----TRVRR--PNEVDGKDYYF--LSLSRFNE-----LKK 76 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~--~~~~~v~~T-----TR~~R--~gE~~G~dY~F--vs~~~F~~-----~i~ 76 (222)
.||.+|-|.||+||||+||+++|.+... +...++-|+ -+..| .|-.+...||. .+-+.|.. +-.
T Consensus 24 ~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~g~~~~~~~~~d~~D~~~l~~~ll~pL~~ 103 (227)
T PRK06696 24 TRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRRGRESARGYYEDAYDYTAFRELLLKPLGP 103 (227)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 98689997789987879999999999974699489971544347377776516677443475410589999999866315
Q ss_pred CCEEEEEE-ECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCC--CCHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 55244545-60457334132112232210122030145234455531267--4157898621327999999985201121
Q gi|255764507|r 77 ANAFIEKA-EVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMG--SNVLSFFILPPTMQELCSRLSLRAKKNQ 153 (222)
Q Consensus 77 ~~~FlE~~-~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~--~~~~~IFI~pps~e~L~~RL~~R~~~~~ 153 (222)
.+. .+|. -.+++.-+.+...-...+..+.++|++ |+--++..+. ++ +.||+.+| .++..+|...|.....
T Consensus 104 ~~~-~~~~~~~~D~~td~~~~~~~~~~p~~~VlIve----G~~ll~~elr~~~D-~~v~ld~~-~~~~~~R~~~Rd~~~~ 176 (227)
T PRK06696 104 NGD-RQYRTASHDLKTDIPVHNEPLMAAPNAVLIVD----GTFLLRKELRDLWD-YKIFLDTD-FEESRRRGAKRDTEAF 176 (227)
T ss_pred CCC-CEEEECCCCCCCCCCCCCCCEECCCCCEEEEE----CHHHCCHHHHHCCC-EEEEEECC-HHHHHHHHHHHHHHHH
T ss_conf 898-05841124633575456871646998089992----55646655773074-89999799-9999887665325441
Q ss_pred -HHHHHHHHHHHHHH-HHHHH------HHHCCEEEECCCHHH
Q ss_conf -12899999999999-99987------641897999498899
Q gi|255764507|r 154 -EDKEKVQLRLQNAY-SEIKK------WEFYDYVLINDDLEN 187 (222)
Q Consensus 154 -d~~e~i~~Rl~~a~-~E~~~------~~~fD~vIvNddle~ 187 (222)
..++....-..... .+..| ...-|.||-|+|++.
T Consensus 177 g~~~~~~~~~~~ry~pa~~~Y~~~~~P~~~Advvv~n~d~~~ 218 (227)
T PRK06696 177 GSYEEAEKMYLERYHPACKLYIDEHNPKECADVVFDNSDPAN 218 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCC
T ss_conf 683789999998763899998641683783859997999899
No 21
>PRK02496 adk adenylate kinase; Provisional
Probab=98.46 E-value=1.2e-06 Score=62.92 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=88.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 9998889999899999999748980-599821107989985468752223799986653055244545604573341321
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNF-EMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~-~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
|+|.||+||||+|.++.|.+.+ ++ .++...-=|. |..... -.-.+.+..+++|.++.-.-+.+ .-.+
T Consensus 4 iillG~PGSGKgTqa~~L~~~~-~~~his~GdllR~----~~~~~s---~lg~~i~~~i~~G~lvpd~iv~~----li~~ 71 (185)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL-QIPHISTGDILRQ----AITEQT---PLGIKAQGYVDSGELVPDQLVLG----LVQE 71 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCEEECHHHHHHH----HHHCCC---HHHHHHHHHHHCCCCCCCHHHHH----HHHH
T ss_conf 9997999999899999999996-9977888899999----987499---88999999998799677288999----9999
Q ss_pred HHHHHHHCCCCEEECCCHHHHHHH------HHCCCCC-HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 122322101220301452344555------3126741-578986213279999999852011211289999999999999
Q gi|255764507|r 97 PIEETISKGKDMLFDIDWQGAQNL------HKQMGSN-VLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSE 169 (222)
Q Consensus 97 ~i~~~l~~g~~~ildid~qG~~~l------~~~~~~~-~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E 169 (222)
.+...- ..+-.|+|-=|.-..+. ....... -.+|++..| .+++.+|+..|++. -|+++.|..|++.+..+
T Consensus 72 ~l~~~~-~~~g~ilDGfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~R~-DD~~e~i~~Rl~~y~~~ 148 (185)
T PRK02496 72 RLQQPD-AANGWILDGFPRNVTQAAFLDELLQEINQSGDRVVNLDVP-DDVIVERLLARGRK-DDTEEVIRRRLEVYREQ 148 (185)
T ss_pred HHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH
T ss_conf 984845-3387788689885788999999999705673033330499-99999998746767-89889999999999999
Q ss_pred HH----HHH-HCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 98----764-18979994--988999999999999
Q gi|255764507|r 170 IK----KWE-FYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 170 ~~----~~~-~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
.. |.. .--++-|| .+.++.++++..+|.
T Consensus 149 t~pvi~~y~~~~~~~~Idg~~~ieeV~~~I~~~l~ 183 (185)
T PRK02496 149 TAPLIDYYRDRQKLLTIDGNQSVEAVTTRLKAALA 183 (185)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 99999999846978999899998999999999863
No 22
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=98.41 E-value=1.2e-06 Score=62.96 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=90.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEE---EECCCCCCCCCCCCCCCCC-HHHHHHHHHCCEEEEEEECCC
Q ss_conf 729999888999989999999974898--0599821---1079899854687522237-999866530552445456045
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQN--FEMSISV---TTRVRRPNEVDGKDYYFLS-LSRFNELKKANAFIEKAEVHG 88 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~--~~~~v~~---TTR~~R~gE~~G~dY~Fvs-~~~F~~~i~~~~FlE~~~~~g 88 (222)
|+||+|=|+|.||||||++.|....+. +.+++=+ +++|.+...-+|.+ |.. ...+ +.+..
T Consensus 1 G~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~gl~--~~~~~~~~------------g~~~~ 66 (174)
T pfam07931 1 GRIILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEAMPPKRQDSGDGLE--WSTVGPVI------------GPEFP 66 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--CCCCCCCH------------HHHHH
T ss_conf 91999748998887999999998474746764285888767711258877766--36666523------------56699
Q ss_pred CCEEEECCHHHHHHHCCCCEEEC---CCHHHHHH-HHHCC-CCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 73341321122322101220301---45234455-53126-741578986213279999999852011211289999999
Q gi|255764507|r 89 NFYGTLRDPIEETISKGKDMLFD---IDWQGAQN-LHKQM-GSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRL 163 (222)
Q Consensus 89 ~~YGt~~~~i~~~l~~g~~~ild---id~qG~~~-l~~~~-~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl 163 (222)
-.+.--..+|......|.++|+| .++..... +++.+ +.+++.|=|.+| .+++++|-+.||-+..- +
T Consensus 67 ~~~~~~~~~iaa~a~~G~nvIvD~v~~~~~~l~d~~~~~L~g~~v~~VGV~Cp-leil~~RE~~RgDR~~G--------~ 137 (174)
T pfam07931 67 LFEAAFYEAVAAMARAGNNVIVDDVILSGEWLQDCLQRLLSGLDVLFVGVRCP-LEVLERREIERGDRVPG--------L 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC--------H
T ss_conf 99999999999999779998996546693789999999858981799998789-99999998736999965--------5
Q ss_pred HHHHHHHHHH-HHCCEEEEC--CCHHHHHHHHHHHH
Q ss_conf 9999999876-418979994--98899999999999
Q gi|255764507|r 164 QNAYSEIKKW-EFYDYVLIN--DDLENSLSILKSVI 196 (222)
Q Consensus 164 ~~a~~E~~~~-~~fD~vIvN--ddle~a~~~L~~iI 196 (222)
++.+.+.-|. ..||..|-- ...+++-++|.+-+
T Consensus 138 A~~q~~~VH~~~~YDlevDTs~~s~~ecA~~I~~~l 173 (174)
T pfam07931 138 AAWQAEAVHAGVEYDLEVDTSHQTPEECARRIRSRL 173 (174)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 578998602599986686799999999999999973
No 23
>PRK08233 hypothetical protein; Provisional
Probab=98.39 E-value=3.4e-06 Score=60.05 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=80.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEEECCCCCE
Q ss_conf 797299998889999899999999748980599821107989985468752223799986653055-2445456045733
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKAN-AFIEKAEVHGNFY 91 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~-~FlE~~~~~g~~Y 91 (222)
|+|.+|-|+|+||||||||+++|.+..|+- .+.+. | -+|+-.+.+.+......+ .|-+| .. ..
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~~l~~~-~~~~~----------D-~y~~~~~~~~~~~~~~~~~~~d~~-d~-~~-- 64 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLKNS-KALYF----------D-RYDFDNCPEDICKWIDDGANYSEW-VL-TP-- 64 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCC-EEEEE----------C-CCCCCCCHHHHHHHHCCCCCCCHH-HH-HH--
T ss_conf 998899996888678999999999974677-58996----------6-655546878899874067786666-69-99--
Q ss_pred EEECCHHHHHHHCCCC---EEECCCHHHHH-----HHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCC-C-CCHHHHHHHH
Q ss_conf 4132112232210122---03014523445-----55312674157898621327999999985201-1-2112899999
Q gi|255764507|r 92 GTLRDPIEETISKGKD---MLFDIDWQGAQ-----NLHKQMGSNVLSFFILPPTMQELCSRLSLRAK-K-NQEDKEKVQL 161 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~---~ildid~qG~~-----~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~-~-~~d~~e~i~~ 161 (222)
-.+.+.. +.+|.. +|++ |.. .|+..+ + +.|||..|.-..|.+|+..--. + +.+-+..+.+
T Consensus 65 --l~~~l~~-l~~~~~~d~iIvE----gil~l~~~~lr~l~--D-~kIfVdtp~Dirl~RRi~RDi~Er~gr~i~svl~q 134 (182)
T PRK08233 65 --LIKDIQE-LIAKSNVDYIIVD----YPFAYLNSEMRQYI--D-VTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKH 134 (182)
T ss_pred --HHHHHHH-HHCCCCCCEEEEE----EEHHHCCHHHHHHH--C-EEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf --9999999-8559987289996----44362689899771--8-78997286899999988888777618878999999
Q ss_pred HHHHHHHHHH-----HHHHCCEEEECC-CHHHHHHHHHHHHH
Q ss_conf 9999999998-----764189799949-88999999999999
Q gi|255764507|r 162 RLQNAYSEIK-----KWEFYDYVLIND-DLENSLSILKSVIE 197 (222)
Q Consensus 162 Rl~~a~~E~~-----~~~~fD~vIvNd-dle~a~~~L~~iI~ 197 (222)
.+...+-.-. -..+.|.||-|. -++..++.+++.+.
T Consensus 135 Y~~~VrPm~~~fvePsk~~ADiIId~~~aid~i~~~i~~~l~ 176 (182)
T PRK08233 135 YLNYARPLYLEALDTVKPNADIVLDGALSVEEIINQIEEELY 176 (182)
T ss_pred HHHHHHHHHHHHHCHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999878899998570032196898586079999999999997
No 24
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.39 E-value=1.5e-06 Score=62.37 Aligned_cols=173 Identities=20% Similarity=0.258 Sum_probs=89.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC--EEE---EEEECCC
Q ss_conf 97299998889999899999999748980599821107989985468752223799986653055--244---5456045
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKAN--AFI---EKAEVHG 88 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~--~Fl---E~~~~~g 88 (222)
+|++|+|=|+-||||||+++.|.+....-++ -.++||.|..+... +...+.+.++ .+- |.--|.-
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~-~v~~trEP~~~~ig---------e~iR~~ll~~~~~~~~~~e~lLfaa 71 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI-KVVLTREPGGTPIG---------EKIRELLLNGEEKLSPKAEALLFAA 71 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCHHH---------HHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9629999788889889999999999998298-07998689998699---------9999997388667888999999999
Q ss_pred CCEEEECCHHHHHHHCCCCEEECCC------HHH---------HHHHHHCCC---CCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 7334132112232210122030145------234---------455531267---4157898621327999999985201
Q gi|255764507|r 89 NFYGTLRDPIEETISKGKDMLFDID------WQG---------AQNLHKQMG---SNVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 89 ~~YGt~~~~i~~~l~~g~~~ildid------~qG---------~~~l~~~~~---~~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
..+..-...|...+..|++||+|=- .|| +.++..... ..-+++|+..| .++=-+|..+|+.
T Consensus 72 dR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~ 150 (208)
T COG0125 72 DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGE 150 (208)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHCCC
T ss_conf 999999999788762899999878313788853530599989999999765478999889999488-8999999983277
Q ss_pred C-CCHHHHH--HHHHHHHHHHHHHHHHHCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 1-2112899--999999999999876418979994--988999999999999
Q gi|255764507|r 151 K-NQEDKEK--VQLRLQNAYSEIKKWEFYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 151 ~-~~d~~e~--i~~Rl~~a~~E~~~~~~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
. +.-+.+. ...++.....++.....--+++|| .++++..+++..++.
T Consensus 151 ~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~ 202 (208)
T COG0125 151 LRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILK 202 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 6551566778999999999999986187718999899997999999999999
No 25
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.37 E-value=1.8e-06 Score=61.84 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEE-
Q ss_conf 9729999888999989999999974898059982110798998546875222379998665305524454560457334-
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYG- 92 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YG- 92 (222)
+|+-||++|+||+||+|+.+.|.+.. ++.| +||=||| +++.-++|- +|.=|. .....+
T Consensus 2 ~~~a~VVmGVsGsGKSTvg~~LA~~L-~~~f-------------iegDd~H--p~~Ni~KM~-~GiPL~----D~DR~pW 60 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF-SAKF-------------IDGDDLH--PAKNIDKMS-QGIPLT----DEDRLPW 60 (176)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH-CCCE-------------ECCCCCC--CHHHHHHHH-CCCCCC----HHHHHHH
T ss_conf 98579998289899899999999995-9877-------------6234437--898999986-899988----6679999
Q ss_pred --EECCHHHHHHHCCCCEEECCCH--HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf --1321122322101220301452--344555312674157898621327999999985201121128999999999999
Q gi|255764507|r 93 --TLRDPIEETISKGKDMLFDIDW--QGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYS 168 (222)
Q Consensus 93 --t~~~~i~~~l~~g~~~ildid~--qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~ 168 (222)
+-.+.+......|..+|+-+.. ...+.+.+.....+.+||+.. +.+.+.+|+..|.-.-. ....+..-++. .
T Consensus 61 L~~l~~~~~~~~~~~~~~VvaCSALK~~YRd~Lr~~~~~v~fv~L~g-~~~~i~~Rl~~R~gHFM-p~~LL~SQf~t--L 136 (176)
T PRK09825 61 LERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKSSPNVHFLWLDG-DYETILARMQRRAGHFM-PPDLLQSQFDA--L 136 (176)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCCCCC-CHHHHHHHHHH--H
T ss_conf 99999999999964998299718867999999974799879999718-99999999974603799-97999989998--1
Q ss_pred HHHHHHHCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 99876418979994--988999999999999
Q gi|255764507|r 169 EIKKWEFYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 169 E~~~~~~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
|.....+-|.+.++ ..+++-++++...+.
T Consensus 137 E~P~~dE~~v~~idi~~~~e~iv~~~~~al~ 167 (176)
T PRK09825 137 ERPCADEHDIARIDVNHDIENVTEQCRQAVQ 167 (176)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 7999888986999789999999999999999
No 26
>PRK03839 putative kinase; Provisional
Probab=98.37 E-value=2.8e-06 Score=60.58 Aligned_cols=144 Identities=21% Similarity=0.250 Sum_probs=73.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEEC
Q ss_conf 29999888999989999999974898059982110798998546875222379998665305524454560457334132
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLR 95 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~ 95 (222)
++|+|+|.+|+||+|+++.|.+.. ++.. ++-.++-. +.+.+-+| +.-+-+..
T Consensus 1 M~I~ITGTPGtGKTTva~~La~~l-g~~~---------------------i~v~~la~--~~~~~~~~----d~~~~iD~ 52 (180)
T PRK03839 1 MIIAITGTPGVGKTTISKLLAEKL-GYEY---------------------VNLRDFAL--EKGIGEEK----DDELEIDV 52 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCEE---------------------EEHHHHHH--HCCCCCCC----CCCCCCCH
T ss_conf 989997899999899999999976-9879---------------------87999999--83998676----77504659
Q ss_pred CHHHHHHH---CCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-----
Q ss_conf 11223221---0122030145234455531267415789862132799999998520112112899999999999-----
Q gi|255764507|r 96 DPIEETIS---KGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAY----- 167 (222)
Q Consensus 96 ~~i~~~l~---~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~----- 167 (222)
+.+...+. .++.+++|-+ . -..++.+.+ +|.--+.++|.+||.+||= ++++|..=+.+-.
T Consensus 53 d~l~~~~~~~~~~~~~ivd~H--~----~h~~p~D~V--IVLR~~P~iL~~RL~~RgY----s~~KI~ENveaEil~vil 120 (180)
T PRK03839 53 DELAYFVEEEFKGKNVVLDGH--L----SHLMPADLV--IVLRAHPKLIAERLKERGY----SKKKIGENVEAELVDVIL 120 (180)
T ss_pred HHHHHHHHHHHCCCCEEEEEE--C----CCCCCCCEE--EEEECCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHH
T ss_conf 999999998734898899864--3----146368779--9997886999999997699----989999999999999999
Q ss_pred HHHHHHHHCCEEE--ECCCHHHHHHHHHHHHHHH
Q ss_conf 9998764189799--9498899999999999998
Q gi|255764507|r 168 SEIKKWEFYDYVL--INDDLENSLSILKSVIEVE 199 (222)
Q Consensus 168 ~E~~~~~~fD~vI--vNddle~a~~~L~~iI~~e 199 (222)
.|........++| .|...++.+.++.++|...
T Consensus 121 ~Ea~e~~~~~~eidtt~~~pe~v~~~I~~~i~~~ 154 (180)
T PRK03839 121 IEALEEHENVIEVDTTNKTPEEVVEEILNLIKSG 154 (180)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 9999843988999899999999999999999579
No 27
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=98.37 E-value=5.2e-06 Score=58.91 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=75.9
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC--------------EEEEEEEEE---CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 83479729999888999989999999974898--------------059982110---7989985468752223799986
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQN--------------FEMSISVTT---RVRRPNEVDGKDYYFLSLSRFN 72 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~--------------~~~~v~~TT---R~~R~gE~~G~dY~Fvs~~~F~ 72 (222)
....|+.+|-|+||+||||||+++.|.+.... |++.-.+-. +..|.|--+- .+-+.|-
T Consensus 29 ~~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~~~~~L~~~~~~~rkGaP~T-----FD~~~l~ 103 (230)
T PRK09270 29 AEPQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHLDNAVLDARGLRARKGAPET-----FDVAGLA 103 (230)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCC-----CCHHHHH
T ss_conf 59997189999899988999999999999862379985799736533457255543547433799102-----1698899
Q ss_pred H---HHHCC-EEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCC-----HHHHHHHHHCCCCCHHHHHHHCCCHHHHHH
Q ss_conf 6---53055-24454560457334132112232210122030145-----234455531267415789862132799999
Q gi|255764507|r 73 E---LKKAN-AFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDID-----WQGAQNLHKQMGSNVLSFFILPPTMQELCS 143 (222)
Q Consensus 73 ~---~i~~~-~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid-----~qG~~~l~~~~~~~~~~IFI~pps~e~L~~ 143 (222)
+ ..+.+ .-+.+ -.+++--..+.+.-..+....+++|++-+ -.+-..++..+ + ++|||.+| .+++++
T Consensus 104 ~~L~~Lk~~~~~v~~-P~yD~~~~d~~~~~~~i~~~~~IVIvEGnyLLld~~~W~~l~~~~--D-~~ifvd~~-~~~~~~ 178 (230)
T PRK09270 104 ELLRRLREGDCEVYW-PVFDRQLEDPVADAIVVGPTARLVIVEGNYLLLDDEPWRRLAGFF--D-FSIFLDAP-AEVLRE 178 (230)
T ss_pred HHHHHHHCCCCCEEE-CCCCCCCCCCCCCCEEECCCCCEEEEECEEEECCCCCHHHHHHHH--C-EEEEEECC-HHHHHH
T ss_conf 999998568971752-134322457788953666998689993447613783289999863--7-67998489-999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHH-----HHHHHHHHCCEEEECC
Q ss_conf 998520112112899999999999-----9998764189799949
Q gi|255764507|r 144 RLSLRAKKNQEDKEKVQLRLQNAY-----SEIKKWEFYDYVLIND 183 (222)
Q Consensus 144 RL~~R~~~~~d~~e~i~~Rl~~a~-----~E~~~~~~fD~vIvNd 183 (222)
|+..|.....-+.++...|..... .=..+...-|.||.+.
T Consensus 179 Rli~R~~~~G~s~e~a~~r~~~nD~pN~~~V~~~~~~aD~vi~~~ 223 (230)
T PRK09270 179 RLVARKLAGGLSPEAARAFYLRNDGPNARLVLETSRPADLVLEMT 223 (230)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEC
T ss_conf 999999872999999999997166107999985798898899956
No 28
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.34 E-value=5.9e-06 Score=58.52 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=87.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE-CC-CC---CCCCCCCCCCCCCHHHHHHHHHCCE---------
Q ss_conf 9729999888999989999999974898059982110-79-89---9854687522237999866530552---------
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT-RV-RR---PNEVDGKDYYFLSLSRFNELKKANA--------- 79 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT-R~-~R---~gE~~G~dY~Fvs~~~F~~~i~~~~--------- 79 (222)
.+++++|.|.||+||+||+-.|... -++..+++--| |. .| +-| .. .-...|++...-+.
T Consensus 2 ~~~iiligG~sGvGKStla~~lA~r-lgi~~visTD~IRevlR~~i~~e-P~-----L~~Ssy~A~~~~~~~~~~~ii~G 74 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARH-RAIDIVLSGDYLREFLRPYVDDE-PV-----LAKSVYDAWEFYGSMTDENIVKG 74 (197)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-CCCCEEECCHHHHHHHHHHCCCC-CC-----HHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 7479998579988789999999997-49975534347999999866887-40-----03304679887089652789999
Q ss_pred EEEEEECCCCCEEEECCHHHHHHHCCCCEEEC---CCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHH-
Q ss_conf 44545604573341321122322101220301---45234455531267415789862132799999998520112112-
Q gi|255764507|r 80 FIEKAEVHGNFYGTLRDPIEETISKGKDMLFD---IDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQED- 155 (222)
Q Consensus 80 FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ild---id~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~- 155 (222)
|..+.+. -.=|+ ..-|+.++.+|.++|++ +.| |.... ....++..++|..++.+..++|+..|++...-.
T Consensus 75 f~~q~~~--V~~gi-~avi~Ra~~eg~slIIEGVHlvP-~~i~~--~~~~~~~~~~l~i~dee~H~~Rf~~R~~~~~~~~ 148 (197)
T PRK12339 75 YLDQARA--IMPGI-NRVIRRALLNGEDLVIESLYFHP-PMIDE--NRTNNIRAFYLYIRDAELHRSRLADRINYTHKNS 148 (197)
T ss_pred HHHHHHH--HHHHH-HHHHHHHHHCCCCEEEEEEEECH-HHHHH--HHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999--99999-99999999739977998521177-88778--8765958999997888999999999854312677
Q ss_pred -HHHHHHHHHHHH---HH-HHHHHHCCE-EEECCCHHHHHHHHHHHHH
Q ss_conf -899999999999---99-987641897-9994988999999999999
Q gi|255764507|r 156 -KEKVQLRLQNAY---SE-IKKWEFYDY-VLINDDLENSLSILKSVIE 197 (222)
Q Consensus 156 -~e~i~~Rl~~a~---~E-~~~~~~fD~-vIvNddle~a~~~L~~iI~ 197 (222)
.+.-...+...+ +. +..+..++. +|.|.|+++|.+.+.++|.
T Consensus 149 p~~ry~~~f~~IR~Iq~ylv~~A~~~~ipvI~n~~~d~s~~~i~~~i~ 196 (197)
T PRK12339 149 PGKRLAEHLPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLDPIS 196 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 166999989999999999999888739985537728999999999840
No 29
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.34 E-value=2.7e-07 Score=67.08 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=62.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 99998889999899999999748980599821107989985468752223799986653055244545604573341321
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
+||++|+||+||||+.+.|.+. .++.+. +|=||| +++.-.+| .+|.=+.-..-......+...
T Consensus 1 liiv~GvsGsGKSTia~~La~~-lg~~~i-------------~~D~~h--~~~n~~km-~~G~pL~d~dr~~wl~~l~~~ 63 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER-LGAPFI-------------DGDDLH--PPANIAKM-AAGIPLNDEDRWPWLQALTDA 63 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HCCCEE-------------CCCCCC--CHHHHHHH-HCCCCCCCCCHHHHHHHHHHH
T ss_conf 9899918999999999999997-199564-------------154335--47689998-679998852378999999999
Q ss_pred HHHHHHHCCCCEEECCCHHH--HHH-HHHC-CCCCHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 12232210122030145234--455-5312-67415789862132799999998520
Q gi|255764507|r 97 PIEETISKGKDMLFDIDWQG--AQN-LHKQ-MGSNVLSFFILPPTMQELCSRLSLRA 149 (222)
Q Consensus 97 ~i~~~l~~g~~~ildid~qG--~~~-l~~~-~~~~~~~IFI~pps~e~L~~RL~~R~ 149 (222)
.....+..|..||+++..-. .+. ++.. ...++.+||+.+ +.+++.+|+..|.
T Consensus 64 ~~~~~~~~g~~vVv~cSaLk~~yR~~l~~~~~~~~v~fi~L~~-~~~~l~~Rl~~R~ 119 (150)
T cd02021 64 LLAKLASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDG-PREVLAERLAARK 119 (150)
T ss_pred HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCC
T ss_conf 9999984499879984332399999999527689858999869-9999999998463
No 30
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.32 E-value=9.1e-06 Score=57.33 Aligned_cols=168 Identities=16% Similarity=0.160 Sum_probs=78.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE-EEE----EEECCCCCCCCCCC-CCCCCCHHHHH------HHHHCCEEEEEE
Q ss_conf 9999888999989999999974898059-982----11079899854687-52223799986------653055244545
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEM-SIS----VTTRVRRPNEVDGK-DYYFLSLSRFN------ELKKANAFIEKA 84 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~-~v~----~TTR~~R~gE~~G~-dY~Fvs~~~F~------~~i~~~~FlE~~ 84 (222)
||.|+|+|||||||+++.|.+..+.... +++ |-.+.+.+-+..+. +|-+-..-.++ ....+|+-+..-
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~yy~~~~~~~~~~~~~~~fd~p~a~d~~~l~~~L~~L~~g~~i~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98988999885999999999980999858997888887986043878436787892264499999999998648976123
Q ss_pred ECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHHH-----HHCCCCCHHHHHHHCCCHHHHHHHHH----HHCCCCCHH
Q ss_conf 604573341321122322101220301452344555-----31267415789862132799999998----520112112
Q gi|255764507|r 85 EVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL-----HKQMGSNVLSFFILPPTMQELCSRLS----LRAKKNQED 155 (222)
Q Consensus 85 ~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l-----~~~~~~~~~~IFI~pps~e~L~~RL~----~R~~~~~d~ 155 (222)
. +++.=|.....- ..+....++|++ |.-.+ +.. ++ +.|||.+|.-..|.+|+. .||. +.
T Consensus 81 ~-Yd~~t~~r~~~~-~~i~~~~iiIvE----Gi~~l~~~~lr~~--~D-~kIfid~~~d~rl~Rri~RD~~eRg~---~~ 148 (198)
T cd02023 81 V-YDFKTHSRLKET-VTVYPADVIILE----GILALYDKELRDL--MD-LKIFVDTDADVRLIRRIERDIVERGR---DL 148 (198)
T ss_pred C-EECCCCCCCCCC-EEECCCCEEEEE----CHHHCCCHHHHHH--HH-CEEEEECCHHHHHHHHHHHHHHHHCC---CH
T ss_conf 1-003457546772-796588659982----5343068888867--40-23786178999999999876988589---99
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHCCEEEECC-CHHHHHHHHHHHH
Q ss_conf 899999999999999-----8764189799949-8899999999999
Q gi|255764507|r 156 KEKVQLRLQNAYSEI-----KKWEFYDYVLIND-DLENSLSILKSVI 196 (222)
Q Consensus 156 ~e~i~~Rl~~a~~E~-----~~~~~fD~vIvNd-dle~a~~~L~~iI 196 (222)
++.+.+......-+. .+..+.|.||.|. +-+.+...|..-|
T Consensus 149 ~~v~~~~~~~v~p~~~~~i~P~k~~ADlIi~~~~~~~~~~~~i~~~i 195 (198)
T cd02023 149 ESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHI 195 (198)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCCEEECCCCCCCHHHHHHHHHH
T ss_conf 99999999860787998652415147389789998621999999998
No 31
>PRK01184 hypothetical protein; Provisional
Probab=98.31 E-value=3e-06 Score=60.39 Aligned_cols=165 Identities=15% Similarity=0.220 Sum_probs=82.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEE-EEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 2999988899998999999997489805998-211079899854687522237999866530552445456045733413
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSI-SVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v-~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
++|.|+|+.||||+|+++.+ +.. +|..+- +-.-|. .-...|.. .+++.+...-.. .-.-+|.-+ ..
T Consensus 2 ~iIGlTG~iGSGKstva~i~-~e~-G~~vi~~~Divr~--~v~~~g~~---~~~~~~~~~~~~-----lR~~~G~~~-~a 68 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSKIA-REL-GIPVVVMGDVIRE--EVKKRGLP---PTDENIGKVATD-----LRKELGMDA-VA 68 (183)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHC-CCEEEECCHHHHH--HHHHCCCC---CCHHHHHHHHHH-----HHHHHCCHH-HH
T ss_conf 39999689988789999999-977-9939986077899--99983899---977899999999-----998719558-99
Q ss_pred CCHHHHHHHCC-CCEEEC-C-CHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 21122322101-220301-4-52344555312674157898621327999999985201121128999999999999998
Q gi|255764507|r 95 RDPIEETISKG-KDMLFD-I-DWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIK 171 (222)
Q Consensus 95 ~~~i~~~l~~g-~~~ild-i-d~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~ 171 (222)
+..++.+-..+ ..|++| + .+.-+..+++.+ ..++.|.|.+| .+.--+||.+|++. ++....+.-+++...|+.
T Consensus 69 ~~~~~~i~~~~~~~~vidgir~~~E~~~~~~~~-~~~~li~V~A~-~~~R~eRl~~R~r~--~D~~s~e~f~~rd~~E~~ 144 (183)
T PRK01184 69 IRTVPKIRELGSELVVVDGVRGDAEVEYFRKEF-EDFILVAIHAP-PETRFERLKKRGRS--DDPKTWEELRERDERELS 144 (183)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC-CCEEEEEEECC-HHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHC
T ss_conf 999999970379828981678789999999746-98499999898-88999999846998--896679999999998744
Q ss_pred -----HHHHCCEEEECC-CHHHHHHHHHHHHH
Q ss_conf -----764189799949-88999999999999
Q gi|255764507|r 172 -----KWEFYDYVLIND-DLENSLSILKSVIE 197 (222)
Q Consensus 172 -----~~~~fD~vIvNd-dle~a~~~L~~iI~ 197 (222)
....-||+|.|+ ++++..+++..++.
T Consensus 145 ~~i~~~i~~AD~vI~N~gsleel~~~v~~~l~ 176 (183)
T PRK01184 145 WGIGEAIALADYMIVNDCTLEEFKARVRKLLE 176 (183)
T ss_pred CCHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 67778998799999879989999999999999
No 32
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=98.30 E-value=1.2e-06 Score=62.92 Aligned_cols=79 Identities=27% Similarity=0.282 Sum_probs=57.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH---HHCCEEEEEEECCCC
Q ss_conf 97299998889999899999999748-98059982110798998546875222379998665---305524454560457
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL---KKANAFIEKAEVHGN 89 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~---i~~~~FlE~~~~~g~ 89 (222)
.|.-|.|+||||+||+||.+-|+..+ |.=+.+. .||+|=.=.++++|.+. +.++--|=.+.+..|
T Consensus 365 PGEtvAlVGPSGAGKSTlf~LLLRFYDP~~G~il-----------LDGvd~r~~dP~~lR~~~ALVpQdp~lFa~Sv~eN 433 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL-----------LDGVDIRDLDPADLRARIALVPQDPALFAASVLEN 433 (576)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE-----------ECCCCHHHCCCHHHHHHCCCCCCCCCCCHHCCHHH
T ss_conf 7765887668876279999999860488876577-----------46641401680878834440258864102030442
Q ss_pred -CEEEECCHHHHHHH
Q ss_conf -33413211223221
Q gi|255764507|r 90 -FYGTLRDPIEETIS 103 (222)
Q Consensus 90 -~YGt~~~~i~~~l~ 103 (222)
.||-+-.+-+++.+
T Consensus 434 IRyGrpDAs~~~V~~ 448 (576)
T TIGR02204 434 IRYGRPDASDEEVEA 448 (576)
T ss_pred HCCCCCCCCHHHHHH
T ss_conf 135996666689999
No 33
>PTZ00301 uridine kinase; Provisional
Probab=98.25 E-value=1.9e-05 Score=55.24 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC-C---EEE-EEEEEE--CCC--CCCCCCCCCCCCCCHHH--HHH------HHH
Q ss_conf 972999988899998999999997489-8---059-982110--798--99854687522237999--866------530
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQ-N---FEM-SISVTT--RVR--RPNEVDGKDYYFLSLSR--FNE------LKK 76 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~-~---~~~-~v~~TT--R~~--R~gE~~G~dY~Fvs~~~--F~~------~i~ 76 (222)
++.+|-|+|+|||||||+++.+++... . ... +++.-. +.. .+-+..| .+.|=..+. |+. ...
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~-~~NfDhP~a~D~dLl~~~L~~Lk 80 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERA-YTNYDHPKSLEHDLLTTHLRELK 80 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCC-CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98899996887678999999999998761499807998367667787658865627-88999823036999999999997
Q ss_pred CCEEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHH-----HHHCCCCCHHHHHHHCCCHHHHHHHHH----H
Q ss_conf 5524454560457334132112232210122030145234455-----531267415789862132799999998----5
Q gi|255764507|r 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQN-----LHKQMGSNVLSFFILPPTMQELCSRLS----L 147 (222)
Q Consensus 77 ~~~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~-----l~~~~~~~~~~IFI~pps~e~L~~RL~----~ 147 (222)
+|+=++--. +++-=++... -...+....++|++ |... +++.+. +.|||.+|+-..|.+|+. .
T Consensus 81 ~Gk~I~~P~-Ydf~~h~R~~-~~~~i~p~~vIIvE----Gi~~l~~~~lr~l~D---lkIFvd~~~dirl~RRi~RDv~e 151 (210)
T PTZ00301 81 SGKTVQIPQ-YDYVHHTRSD-TAVTMTPKSVLIVE----GILLFTNAELRNEMD---CLIFVDTPLDICLIRRAKRDMRE 151 (210)
T ss_pred CCCCEECCC-CCCCCCCCCC-CEEEECCCCEEEEE----EEHHCCCHHHHHHHC---EEEEECCCHHHHHHHHHHHHHHH
T ss_conf 699634466-5556776679-70896688569997----104307898997742---45773487237889988877887
Q ss_pred HCCCCCHHHHHHHHHHHHH---HHHH--HHHHHCCEEEECC-CHHHHHHHHHH
Q ss_conf 2011211289999999999---9999--8764189799949-88999999999
Q gi|255764507|r 148 RAKKNQEDKEKVQLRLQNA---YSEI--KKWEFYDYVLIND-DLENSLSILKS 194 (222)
Q Consensus 148 R~~~~~d~~e~i~~Rl~~a---~~E~--~~~~~fD~vIvNd-dle~a~~~L~~ 194 (222)
||+ +-+..+.+..+.. .... .+..+.|.||-+. +-+.|..-+.+
T Consensus 152 RGr---~~e~Vi~qy~~~V~P~~~~fI~P~k~~ADiIIp~~~~n~va~~~i~~ 201 (210)
T PTZ00301 152 RGR---TFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRA 201 (210)
T ss_pred HCC---CHHHHHHHHHHHHCCCHHHHCCHHHHCCCEEECCCCCCCHHHHHHHH
T ss_conf 588---99999999996623058876805163361897899986319999999
No 34
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.23 E-value=6.2e-06 Score=58.39 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=76.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCCC--CHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 9729999888999989999999974898059982110798998546875--2223--79998665305524454560457
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYFL--SLSRFNELKKANAFIEKAEVHGN 89 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~Fv--s~~~F~~~i~~~~FlE~~~~~g~ 89 (222)
+++-|+|+|++||||||+.+.|.+.. ++.++= |-.-.. +..|.+ -.|- .++.|.+...
T Consensus 3 ~~~nI~liG~~GsGKTtvgk~LA~~L-~~~fiD--~D~~Ie--~~~g~si~~if~~~Ge~~FR~~E~------------- 64 (175)
T PRK00131 3 KGPNIVLIGMMGAGKSTIGRLLAKRL-GYEFID--TDHLIE--ARAGKSIPEIFEEEGEAGFRELEE------------- 64 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCC--CCHHHH--HHHCCCHHHHHHHHCHHHHHHHHH-------------
T ss_conf 99808988899999899999999995-969023--988999--761699999999858899999999-------------
Q ss_pred CEEEECCHHHH-------HHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC----CCHHHHH
Q ss_conf 33413211223-------221012203014523445553126741578986213279999999852011----2112899
Q gi|255764507|r 90 FYGTLRDPIEE-------TISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK----NQEDKEK 158 (222)
Q Consensus 90 ~YGt~~~~i~~-------~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~----~~d~~e~ 158 (222)
+.+.+ +++.|--+++ +++....|++ ..++||+.+ |.+.+.+|+.....+ ..+..+.
T Consensus 65 ------~~l~~l~~~~~~VIstGGG~v~--~~~~~~~L~~----~g~vV~L~~-~~e~l~~Rl~~~~~RPll~~~~~~~~ 131 (175)
T PRK00131 65 ------EVLAELLQRHNLVISTGGGAVL--REENRALLRE----RGTVVYLDA-SFEELLRRLARDRNRPLLQTEDPKEK 131 (175)
T ss_pred ------HHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHC----CCCEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf ------9999651479859974898226--8899999981----693799857-99999998648999987889986999
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEE--CCCHHHHHHHHHHHHH
Q ss_conf 99999999999987641897999--4988999999999999
Q gi|255764507|r 159 VQLRLQNAYSEIKKWEFYDYVLI--NDDLENSLSILKSVIE 197 (222)
Q Consensus 159 i~~Rl~~a~~E~~~~~~fD~vIv--Nddle~a~~~L~~iI~ 197 (222)
+..-++ +.+-.|....|++|. |.+.++.++++.+.|.
T Consensus 132 l~~l~~--~R~~~Y~~~Ad~~Idt~~~s~~ei~~~Ii~~L~ 170 (175)
T PRK00131 132 LRALYE--ERDPLYEEVADLTIETDRRSPEEVVNEILELLE 170 (175)
T ss_pred HHHHHH--HHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999999--999989753899998999999999999999999
No 35
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=3.1e-06 Score=60.37 Aligned_cols=174 Identities=24% Similarity=0.365 Sum_probs=90.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE-CC-CCCCCCCCCCCC-CCCHHHHHHHHHCC----------
Q ss_conf 479729999888999989999999974898059982110-79-899854687522-23799986653055----------
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT-RV-RRPNEVDGKDYY-FLSLSRFNELKKAN---------- 78 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT-R~-~R~gE~~G~dY~-Fvs~~~F~~~i~~~---------- 78 (222)
.++|.+|+|.|+||+||+||+..+... -++..+++--. |. .|+ .-+.+|. -+-...|++...-+
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~r-LgI~~visTD~IREvlR~--ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia 162 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARR-LGIRSVISTDSIREVLRK--IISPELLPTLHTSSYDAWKALRDPTDENPIIA 162 (299)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEECCHHHHHHHHH--HCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 578759996178877725799999997-298610042479999997--37977455356757799998368999961313
Q ss_pred EEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHHH----H-HCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 244545604573341321122322101220301452344555----3-12674157898621327999999985201121
Q gi|255764507|r 79 AFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL----H-KQMGSNVLSFFILPPTMQELCSRLSLRAKKNQ 153 (222)
Q Consensus 79 ~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l----~-~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~ 153 (222)
.|..+++ --.=|+.. -|+.++.+|.++|++ |+.-+ + +.++.+++..++..++.+..+.|+..|.+...
T Consensus 163 GF~dqa~--~V~~GI~~-VI~RAi~eG~~lIIE----GvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~ 235 (299)
T COG2074 163 GFEDQAS--AVMVGIEA-VIERAIEEGEDLIIE----GVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTH 235 (299)
T ss_pred HHHHHHH--HHHHHHHH-HHHHHHHCCCCEEEE----EEEECCCCCCHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 1787767--99988999-999998537535887----4211500216766135517899983887899999999888876
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHCCE-EEECCCHHHHHHHHHHHHH
Q ss_conf 12899999999999999--------87641897-9994988999999999999
Q gi|255764507|r 154 EDKEKVQLRLQNAYSEI--------KKWEFYDY-VLINDDLENSLSILKSVIE 197 (222)
Q Consensus 154 d~~e~i~~Rl~~a~~E~--------~~~~~fD~-vIvNddle~a~~~L~~iI~ 197 (222)
.+ .--.|....-.|+ ..+..|+. ||.|+|+++|..++.+.|.
T Consensus 236 ~~--rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i~ 286 (299)
T COG2074 236 AS--RPGGRYLEYFKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDIR 286 (299)
T ss_pred CC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 05--9656799999999999999999888659981125319999999999999
No 36
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.21 E-value=5.5e-06 Score=58.71 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=81.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE-EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 99988899998999999997489805-99821107989985468752223799986653055244545604573341321
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFE-MSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~-~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
|+|.||+||||+|.++.|.+.+ ++. +++..-=|. |+.... ---.+....+++|.++--.-+.+ .-.+
T Consensus 3 iillG~PGsGKgTqa~~la~~~-~~~~is~GdllR~----~i~~~s---~~g~~i~~~~~~G~lVpd~i~~~----lv~~ 70 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY-GIPHISTGDMLRA----AIKAGT---ELGKEAKSYMDAGELVPDEIVIG----LVKE 70 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCEEECHHHHHHH----HHHCCC---HHHHHHHHHHHCCCCCCHHHHHH----HHHH
T ss_conf 9998999998799999999986-9917868899999----987399---88999999997798778899999----9999
Q ss_pred HHHHHHHCCCCEEECCCHHHHHH---HH---HCCCCCH-HHHHHHCCCHHHHHHHHHHHC--------------------
Q ss_conf 12232210122030145234455---53---1267415-789862132799999998520--------------------
Q gi|255764507|r 97 PIEETISKGKDMLFDIDWQGAQN---LH---KQMGSNV-LSFFILPPTMQELCSRLSLRA-------------------- 149 (222)
Q Consensus 97 ~i~~~l~~g~~~ildid~qG~~~---l~---~~~~~~~-~~IFI~pps~e~L~~RL~~R~-------------------- 149 (222)
.+.+. ...+-.|||-=|.-..+ +- ......+ .+|++..| .+++.+|+..|.
T Consensus 71 ~l~~~-~~~~G~IlDGfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 148 (215)
T PRK00279 71 RLAQP-DCANGFLLDGFPRTIPQAEALDEMLKEAGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPKVEG 148 (215)
T ss_pred HHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98365-65570798689998799999999998649986889999688-99999998611567556764554578988666
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH----HHH-HCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf ----------1121128999999999999998----764-18979994--988999999999999
Q gi|255764507|r 150 ----------KKNQEDKEKVQLRLQNAYSEIK----KWE-FYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 150 ----------~~~~d~~e~i~~Rl~~a~~E~~----~~~-~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
.+.-|+++.|..|++.+..+.. |+. .--++.+| .+.++.++++.++|.
T Consensus 149 ~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pvi~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 213 (215)
T PRK00279 149 KCDVTGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 45543320257999869999999999999888999999817978999898998999999999984
No 37
>PRK07429 phosphoribulokinase; Provisional
Probab=98.19 E-value=3.3e-05 Score=53.76 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEE--CCCCCCC-CCCCCCCCCCHHHHH------HHHHCC
Q ss_conf 48347972999988899998999999997489-8059982110--7989985-468752223799986------653055
Q gi|255764507|r 9 LTVNHRGMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTT--RVRRPNE-VDGKDYYFLSLSRFN------ELKKAN 78 (222)
Q Consensus 9 ~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TT--R~~R~gE-~~G~dY~Fvs~~~F~------~~i~~~ 78 (222)
+.|.+||.+|-|+|-|||||+|++++|.+... ....+++.-. |-.|... ..|.++.-=....|+ +..++|
T Consensus 2 ~~m~~rP~IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~r~~~~~t~lhP~And~dLl~e~L~~Lk~G 81 (331)
T PRK07429 2 TSMPDRPVIIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQRKEIGITALDPRANNFDLMYEQLKALKTG 81 (331)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHCC
T ss_conf 98999998999857887789999999999838887799947867778878898718987896400599999999999859
Q ss_pred EEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHH-----HHHHCCCCCHHHHHHHCCCHHHHHHHHH----HHC
Q ss_conf 2445456045733413211223221012203014523445-----5531267415789862132799999998----520
Q gi|255764507|r 79 AFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQ-----NLHKQMGSNVLSFFILPPTMQELCSRLS----LRA 149 (222)
Q Consensus 79 ~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~-----~l~~~~~~~~~~IFI~pps~e~L~~RL~----~R~ 149 (222)
+=++- -++++--|+. +.- ..+.-..++|++ |.. .++..+. +.|||.||+--.+..|+. +||
T Consensus 82 k~I~~-PvYdh~tg~~-~~~-~~I~P~~vIIvE----GLh~L~~~~lR~l~D---lKIFVD~d~diR~~rRI~RDv~ERG 151 (331)
T PRK07429 82 QPILK-PIYNHETGKI-DPP-EYIKPNKIVVVE----GLHPLYDERVRDLYD---FKVYLDPPDEVKIAWKIKRDMAERG 151 (331)
T ss_pred CCCCC-CCCCCCCCCC-CCC-EEECCCCEEEEE----CCHHCCCHHHHHHCC---EEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 97256-5235647877-886-660688679991----612128798997549---3799648788999998887786618
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----HHHHCCEEEE
Q ss_conf 1121128999999999999998-----7641897999
Q gi|255764507|r 150 KKNQEDKEKVQLRLQNAYSEIK-----KWEFYDYVLI 181 (222)
Q Consensus 150 ~~~~d~~e~i~~Rl~~a~~E~~-----~~~~fD~vIv 181 (222)
. +.|.+..-+.+.+-+.. +.++-|.||-
T Consensus 152 ~----s~E~Vl~qi~~RkpD~~~yI~PQk~~ADiVI~ 184 (331)
T PRK07429 152 H----TYEDVLAEIEKREPDFEAYIDPQRQYADVVIQ 184 (331)
T ss_pred C----CHHHHHHHHHHCCHHHHHHCCCCHHCCCEEEE
T ss_conf 9----99999999985117899766804112728999
No 38
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.17 E-value=8e-06 Score=57.68 Aligned_cols=162 Identities=20% Similarity=0.328 Sum_probs=85.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE-EEE
Q ss_conf 999888999989999999974898059982110--79899854687522237999866530552445456045733-413
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTT--RVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY-GTL 94 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT--R~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y-Gt~ 94 (222)
|+|.|||||||+|++++|.+.. .++|.. ---|++-..+.. --.+-+..+.+|+++. +..+ |+-
T Consensus 3 iiilG~pGaGK~T~A~~La~~~-----~i~hlstgd~~r~~~~~~t~----lg~~~k~~i~~g~lv~-----d~i~~~~v 68 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL-----GLPHLDTGDILRAAIAERTE----LGEEIKKYIDKGELVP-----DEIVNGLV 68 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-----CCCEECCCCCCCHHHCCCCH----HHHHHHHHHHCCCCCC-----HHHHHHHH
T ss_conf 9998999998899999999976-----99785522011110032368----9999999987589504-----17699799
Q ss_pred CCHHHHHHHCCCCEEECCCHHH---HHHHHH---CCCCC-HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 2112232210122030145234---455531---26741-5789862132799999998520112112899999999999
Q gi|255764507|r 95 RDPIEETISKGKDMLFDIDWQG---AQNLHK---QMGSN-VLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAY 167 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid~qG---~~~l~~---~~~~~-~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~ 167 (222)
.+.+...-..+ .+|++-=|.= ++.+++ .++.. -.++.+..|. +.+-.|+..|..+.-|.++.+..|+....
T Consensus 69 ~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~r~dd~~~~~~~R~~~y~ 146 (178)
T COG0563 69 KERLDEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRVREDDNEETVKKRLKVYH 146 (178)
T ss_pred HHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCH-HHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99997506577-29998998369999999999986399855260244778-99999973665433467899999999987
Q ss_pred HHHHH-HHHCCEEEEC--CCHHHHHHHHHHHH
Q ss_conf 99987-6418979994--98899999999999
Q gi|255764507|r 168 SEIKK-WEFYDYVLIN--DDLENSLSILKSVI 196 (222)
Q Consensus 168 ~E~~~-~~~fD~vIvN--ddle~a~~~L~~iI 196 (222)
....- -.+|. +-++ ..+++-++++..++
T Consensus 147 ~~~~pl~~~y~-~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 147 EQTAPLIEYYS-VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred HCCCCEEEEEE-ECCCCCCCHHHHHHHHHHHH
T ss_conf 54683477775-11467788999999999864
No 39
>PRK04182 cytidylate kinase; Provisional
Probab=98.11 E-value=7.1e-06 Score=58.01 Aligned_cols=159 Identities=22% Similarity=0.289 Sum_probs=79.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-EEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 29999888999989999999974898059982-11079899854687522237999866530552445456045733413
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSIS-VTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~-~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
+.|.|+||+||||+|+.+.|.+.. ++.+.=+ ..-|.. .+..| ++.++|.+....+.-+ .. ..
T Consensus 1 m~ItI~g~~GSGk~tIak~LA~~l-g~~~~d~g~i~r~~--a~~~g-----~~~~~~~~~~e~~~~i-----d~----~~ 63 (178)
T PRK04182 1 MRITISGPPGSGKTTVARLLAEKL-GLKLVSAGDIFREL--ARERG-----MSLEEFNKYAEEDPEI-----DK----EI 63 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCEEECHHHHHHHH--HHHCC-----CCHHHHHHHHHCCHHH-----HH----HH
T ss_conf 989995899888799999999995-99387212999999--99859-----9999999998519268-----99----99
Q ss_pred CCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHH-HHHH
Q ss_conf 2112232210122030145234455531267415789862132799999998520112112-8999999999999-9987
Q gi|255764507|r 95 RDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQED-KEKVQLRLQNAYS-EIKK 172 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~-~e~i~~Rl~~a~~-E~~~ 172 (222)
...+.+. +.+..||++- . ++..+... ...+.|||.+| .+...+|+..|...+.+. .+.+..|-..... -..+
T Consensus 64 ~~~~~~~-a~~~~~Vi~G-R-~~~~il~~--~~~l~ifl~A~-~e~R~~Ri~~r~~~~~~~a~~~i~~rd~~~~~r~~~~ 137 (178)
T PRK04182 64 DRRQLEL-AKRGNVVLEG-R-LAGWIVKN--YADLKIYLKAP-LEVRAKRIAEREGISVEEALEETIEREESEAKRYLEY 137 (178)
T ss_pred HHHHHHH-HHCCCEEEEC-C-CCCEEECC--CCCEEEEEECC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999-8539989983-8-88769727--98779999899-9999999997329999999999999899999999986
Q ss_pred -------HHHCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf -------64189799949--88999999999999
Q gi|255764507|r 173 -------WEFYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 173 -------~~~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
...||.+|... +.+++++.+.++|+
T Consensus 138 y~~~~~d~~~ydl~Idts~l~~d~vv~~I~~~i~ 171 (178)
T PRK04182 138 YGIDIDDLSIYDLVINTSKWSPEEVFEIILAAID 171 (178)
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 0899775310748998999999999999999999
No 40
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.10 E-value=2.3e-05 Score=54.80 Aligned_cols=170 Identities=20% Similarity=0.265 Sum_probs=80.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE------EEECCCC
Q ss_conf 2999988899998999999997489805998211079899854687522237999866530552445------4560457
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIE------KAEVHGN 89 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE------~~~~~g~ 89 (222)
++|+|-|+-||||+|+++.|.+....-+..+ .+||.|-.... | +..+.....+.... ..-+-.+
T Consensus 1 m~IviEG~dGsGKsT~~~~L~~~L~~~g~~v-~~~~eP~~~~~-~--------~~ir~~l~~~~~~~~~~~~~~lL~~a~ 70 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEV-VLTREPGGTPI-G--------EAIRELLLDPEDEKMDPRAELLLFAAD 70 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHH-H--------HHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9899989989999999999999999779938-99869999846-7--------899998733354568999999999999
Q ss_pred CEEEECCHHHHHHHCCCCEEECCCH------HHH---------HHHHH---C-CCCCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 3341321122322101220301452------344---------55531---2-674157898621327999999985201
Q gi|255764507|r 90 FYGTLRDPIEETISKGKDMLFDIDW------QGA---------QNLHK---Q-MGSNVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 90 ~YGt~~~~i~~~l~~g~~~ildid~------qG~---------~~l~~---~-~~~~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
.+..-...+...+..|+++|+|=-+ ||+ ..+.. . ...+ .+||+..| .++..+|+..|+.
T Consensus 71 R~~~~~~~i~~~l~~~~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD-l~i~Ld~~-pe~~~~Ri~~R~~ 148 (200)
T cd01672 71 RAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPD-LTILLDID-PEVGLARIEARGR 148 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC-EEEEEECC-HHHHHHHHHHCCC
T ss_conf 999999999988845998998455112888877406999999999998774699999-89998179-9999999984689
Q ss_pred CCCHHHH--HHHHHHHHHHHHHHHHHHCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 1211289--9999999999999876418979994--988999999999999
Q gi|255764507|r 151 KNQEDKE--KVQLRLQNAYSEIKKWEFYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 151 ~~~d~~e--~i~~Rl~~a~~E~~~~~~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
....+.+ +-..++..+..++.....--++++| .+.++..+++.++|.
T Consensus 149 ~~~~e~~~~~~~~kv~~~Y~~~~~~~~~~~~vIDa~~~~eev~~~I~~~i~ 199 (200)
T cd01672 149 DDRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 872765159999999999999997588978998699999999999999971
No 41
>PRK13973 thymidylate kinase; Provisional
Probab=98.05 E-value=3.5e-05 Score=53.58 Aligned_cols=172 Identities=18% Similarity=0.215 Sum_probs=88.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEE------EEEEECC
Q ss_conf 9729999888999989999999974898059982110798998546875222379998665305524------4545604
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAF------IEKAEVH 87 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~F------lE~~~~~ 87 (222)
||++|++=|.-||||+|.++.|.+....-+..+ ++||.|-... .-+....++.++.. .|.--+.
T Consensus 2 kG~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~v-~~trePg~t~---------~~e~ir~~ll~~~~~~~~~~~e~lLfa 71 (216)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDV-LVTREPGGSP---------GAEAIRHVLLSGAAELYGPAMEALLFA 71 (216)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCC---------CHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 824999889999989999999999999779957-9940989984---------089999998466657899899999999
Q ss_pred CCCEEEECCHHHHHHHCCCCEEECCC------HHHHHH---------HHH----CCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 57334132112232210122030145------234455---------531----26741578986213279999999852
Q gi|255764507|r 88 GNFYGTLRDPIEETISKGKDMLFDID------WQGAQN---------LHK----QMGSNVLSFFILPPTMQELCSRLSLR 148 (222)
Q Consensus 88 g~~YGt~~~~i~~~l~~g~~~ildid------~qG~~~---------l~~----~~~~~~~~IFI~pps~e~L~~RL~~R 148 (222)
.+..=-...-|...+++|++||+|== .||+.. +.. ...++ ++||+..| .++-.+|+..|
T Consensus 72 A~R~eh~~~~I~paL~~g~~VI~DRy~~Ss~AYQg~~~~~~~~~l~~l~~~~~~~~~PD-lti~LDv~-~e~a~~R~~~R 149 (216)
T PRK13973 72 AARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPD-LTLILDIP-AEVGLERAAKR 149 (216)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC-EEEEECCC-HHHHHHHHHHH
T ss_conf 99999999999999977998986786257999977427889899999999996799999-89998188-89999999983
Q ss_pred CCCCC-H---HH-HHHHHHHHHHHHHHHHHHHCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 01121-1---28-99999999999999876418979994--988999999999999
Q gi|255764507|r 149 AKKNQ-E---DK-EKVQLRLQNAYSEIKKWEFYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 149 ~~~~~-d---~~-e~i~~Rl~~a~~E~~~~~~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
+..+. | .+ -....++..+..++.....-.+++++ .+.++-.+++.++|+
T Consensus 150 ~~~~~~dr~E~~~~~f~~kVr~~Y~~la~~~~~r~~vIDa~~s~eeV~~~I~~~v~ 205 (216)
T PRK13973 150 RGSETPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDADASPEAVAAEIWAAVD 205 (216)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 57763002556479999999999999998598878997199999999999999999
No 42
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.03 E-value=5.7e-06 Score=58.65 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=33.1
Q ss_pred CCCCCEECCCCCCCCE-EEEEECCCCCCHHHHHHHHHHH--CCCEEEEE
Q ss_conf 9887300048347972-9999888999989999999974--89805998
Q gi|255764507|r 1 MNRDRLFPLTVNHRGM-MLIISSPSGVGKSTIARHLLKC--DQNFEMSI 46 (222)
Q Consensus 1 ~~~~~~~~~~~~~r~~-iivl~GpsG~GK~tl~~~L~~~--~~~~~~~v 46 (222)
|++++-=......+|. |+||+||+|||||||.+-..+- .+-|++++
T Consensus 435 mrrkkkPkL~~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~Sl 483 (941)
T TIGR00763 435 MRRKKKPKLRGKMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL 483 (941)
T ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf 7640364447788887678720726954222789999996880499952
No 43
>PRK13975 thymidylate kinase; Provisional
Probab=98.02 E-value=8.5e-05 Score=51.12 Aligned_cols=163 Identities=18% Similarity=0.278 Sum_probs=81.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 72999988899998999999997489805998211079899854687522237999866530552445456045733413
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
+++|++=|+-||||+|.++.|.+..+. .+||+|..+.. | +...+.......=-.+ .-.+|...
T Consensus 2 ~kfI~fEGiDGsGKsTq~~lL~~~L~~------~~t~epg~t~~-g--------e~IR~~l~~~~~~~~~--~~LLfaA~ 64 (198)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA------KFTFEPTDGKI-G--------KSIREILSGSECQKET--LALLFAAD 64 (198)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC------CEEECCCCCCH-H--------HHHHHHHHCCCCCHHH--HHHHHHHH
T ss_conf 988999899888699999999997387------48889799844-7--------9999998268998599--99999999
Q ss_pred C----CHHHHHHHCCCCEEECC------CHHHHH--------HHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 2----11223221012203014------523445--------55312674157898621327999999985201121128
Q gi|255764507|r 95 R----DPIEETISKGKDMLFDI------DWQGAQ--------NLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDK 156 (222)
Q Consensus 95 ~----~~i~~~l~~g~~~ildi------d~qG~~--------~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~ 156 (222)
+ +.|...+..| .||+|= =.||++ ++.......-+++|+..| .++..+|+..|.....+..
T Consensus 65 R~~~~~~i~~~l~~~-~VI~DRy~~St~AYQ~~~g~~~~~i~~l~~~~~~PDlt~~LDi~-~e~~l~R~~~r~~~~~e~~ 142 (198)
T PRK13975 65 RVEHVSEIEEDLKKS-HVVSDRYVYSSIVYQSSQGIDKDFIYSINDYAKIPDLVVLLDVD-LEEALKRMESREKEIFEKI 142 (198)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHCCCCHHHHHH
T ss_conf 999999999998689-88972761239998561399999999999679999989997398-9999998763573155429
Q ss_pred HHHHHHHHHHHHHHHHHH------HCCEEEECC---CHHHHHHHHHHHHH
Q ss_conf 999999999999998764------189799949---88999999999999
Q gi|255764507|r 157 EKVQLRLQNAYSEIKKWE------FYDYVLIND---DLENSLSILKSVIE 197 (222)
Q Consensus 157 e~i~~Rl~~a~~E~~~~~------~fD~vIvNd---dle~a~~~L~~iI~ 197 (222)
....|++.+..++.... .+.+++++. ..|+-.+++.++|.
T Consensus 143 -~f~~kVr~~yl~la~~~~~r~~~~~~~i~Id~~~ksieeV~~~I~~~i~ 191 (198)
T PRK13975 143 -EIQKKIKEGYYNLINSENEKFMPKYGFIVIDTTSKSIEEVFNEILNAIL 191 (198)
T ss_pred -HHHHHHHHHHHHHHHHCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf -9999999999999974823100125718998999999999999999999
No 44
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.01 E-value=4.1e-05 Score=53.11 Aligned_cols=157 Identities=22% Similarity=0.280 Sum_probs=77.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-EEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 29999888999989999999974898059982-11079899854687522237999866530552445456045733413
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSIS-VTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~-~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
++|.|+||+|+||+|+++.|.+.. ++.++-+ ++=|.+ ...-| +|-++|.+..+.+--+ -+-+.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~-gl~~vsaG~iFR~~--A~e~g-----msl~ef~~~AE~~p~i--------D~~iD 64 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL-GLKLVSAGTIFREM--ARERG-----MSLEEFSRYAEEDPEI--------DKEID 64 (179)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHH-CCCEEECCHHHHHH--HHHCC-----CCHHHHHHHHHCCCHH--------HHHHH
T ss_conf 979961799997027999999982-97156212799999--99839-----9999999987519216--------69988
Q ss_pred CCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 2112232210122030145234455531267415789862132799999998520112112899999999999999-876
Q gi|255764507|r 95 RDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEI-KKW 173 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~-~~~ 173 (222)
+... .... ..+||++-...| .-++ ....+.||+.+| +++--+|...|-- .+-++....-..+-..|. .|.
T Consensus 65 ~rq~-e~a~-~~nvVlegrLA~-Wi~k---~~adlkI~L~Ap-l~vRa~Ria~REg--i~~~~a~~~~~~RE~se~kRY~ 135 (179)
T COG1102 65 RRQK-ELAK-EGNVVLEGRLAG-WIVR---EYADLKIWLKAP-LEVRAERIAKREG--IDVDEALAETVEREESEKKRYK 135 (179)
T ss_pred HHHH-HHHH-CCCEEEHHHHHH-HHHC---CCCCEEEEEECC-HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999-9987-289587004578-8733---565468888575-9999999998608--9899999999998899999999
Q ss_pred H----------HCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 4----------189799949--88999999999999
Q gi|255764507|r 174 E----------FYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 174 ~----------~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
. .||.||.-. |.++.+.-|...|.
T Consensus 136 ~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid 171 (179)
T COG1102 136 KIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAID 171 (179)
T ss_pred HHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 985878766636778875366788899999999987
No 45
>PRK13974 thymidylate kinase; Provisional
Probab=98.00 E-value=9.2e-06 Score=57.28 Aligned_cols=175 Identities=19% Similarity=0.245 Sum_probs=86.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC--CE--EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC----EE---EE
Q ss_conf 972999988899998999999997489--80--599821107989985468752223799986653055----24---45
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQ--NF--EMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKAN----AF---IE 82 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~--~~--~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~----~F---lE 82 (222)
||++|++=|.-||||+|.++.|.+... ++ ...-.++||.|-... -| +.....+..+ .+ .|
T Consensus 2 ~G~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~rePg~t~-~g--------~~ir~~l~~~~~~~~~~~~~e 72 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTL-LG--------KSLRELLLDTSKDNSPSPLAE 72 (212)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-HH--------HHHHHHHHCCCCCCCCCHHHH
T ss_conf 941999889999989999999999998658753586157714999980-69--------999999806654568887999
Q ss_pred EEECCCCCEEEECCHHHHHHHCCCCEEECC------CHHHH---------HHHHHC----CCCCHHHHHHHCCCHHHHHH
Q ss_conf 456045733413211223221012203014------52344---------555312----67415789862132799999
Q gi|255764507|r 83 KAEVHGNFYGTLRDPIEETISKGKDMLFDI------DWQGA---------QNLHKQ----MGSNVLSFFILPPTMQELCS 143 (222)
Q Consensus 83 ~~~~~g~~YGt~~~~i~~~l~~g~~~ildi------d~qG~---------~~l~~~----~~~~~~~IFI~pps~e~L~~ 143 (222)
.--+-.+.+=.-...|...+++|++||+|= -.||+ ..+... ..++ ++||+..| .++--+
T Consensus 73 ~lLf~AdR~e~~~~~I~paL~~G~iVI~DRY~~St~AYQg~~~g~~~~~i~~l~~~~~~~~~PD-lt~~LDv~-~e~a~~ 150 (212)
T PRK13974 73 LLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPD-LTFFLEIS-VEESIR 150 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC-EEEEECCC-HHHHHH
T ss_conf 9999999999999999999837999997883235999988626999999999999874799999-89997697-588999
Q ss_pred HHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHCCEEEEC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf 9985201121128-99999999999999876418979994--98899999999999998874
Q gi|255764507|r 144 RLSLRAKKNQEDK-EKVQLRLQNAYSEIKKWEFYDYVLIN--DDLENSLSILKSVIEVERIR 202 (222)
Q Consensus 144 RL~~R~~~~~d~~-e~i~~Rl~~a~~E~~~~~~fD~vIvN--ddle~a~~~L~~iI~~er~~ 202 (222)
|...|+....+.+ .....++..+...+.. ...+++|+ .++|+-.+++.++|. ++++
T Consensus 151 R~~~~~~dr~e~e~~~f~~kVr~~y~~la~--~~~~~~IDa~~~ieeV~~~I~~~i~-~~~~ 209 (212)
T PRK13974 151 RRKNRKPDRIEAEGIEFLERVAEGFALIAE--ERNWKVISADQSIETISNEIKETLL-NNFS 209 (212)
T ss_pred HHHCCCCCCHHCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHH-HHHH
T ss_conf 884776343101619999999999999847--3987999899999999999999999-9973
No 46
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.97 E-value=3.8e-05 Score=53.38 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=56.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEE-EEEEEE-CCCCCCCCCCCCCCCCCH-----HHHHHH---HHCCEEEEEE
Q ss_conf 999988899998999999997489--8059-982110-798998546875222379-----998665---3055244545
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQ--NFEM-SISVTT-RVRRPNEVDGKDYYFLSL-----SRFNEL---KKANAFIEKA 84 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~--~~~~-~v~~TT-R~~R~gE~~G~dY~Fvs~-----~~F~~~---i~~~~FlE~~ 84 (222)
+|-|+|||||||||++++|.+... +... +++.=. -.++..+ ...++.|-.. +.|.+. ..+|+=++.
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~~~~~-~~~~~n~D~p~a~d~~ll~~~L~~L~~g~~v~~- 78 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTP-RDEDGNYDFESILDLDLLNKNLHDLLNGKEVEL- 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-
T ss_conf 989989897789999999999984648853999546664576520-001468898135349999999999977995575-
Q ss_pred ECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHH----HHHHCCCCCHHHHHHHCCCHH-HHHHHHH----HHCC
Q ss_conf 6045733413211223221012203014523445----553126741578986213279-9999998----5201
Q gi|255764507|r 85 EVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQ----NLHKQMGSNVLSFFILPPTMQ-ELCSRLS----LRAK 150 (222)
Q Consensus 85 ~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~----~l~~~~~~~~~~IFI~pps~e-~L~~RL~----~R~~ 150 (222)
-.+++.-|+....-.-.+....++|++ |.. .|+..+ + +.|||.+|+-. .|.+|+. .||.
T Consensus 79 P~YDf~t~~r~~~~~~~~~p~~vIIvE----Gi~~l~~~lr~~~--D-~kIfvd~~~~~~Rl~RRi~RD~~eRg~ 146 (179)
T cd02028 79 PIYDFRTGKRRGYRKLKLPPSGVVILE----GIYALNERLRSLL--D-IRVAVSGGVHLNRLLRRVVRDIQFRGY 146 (179)
T ss_pred EEEECCCCCCCCCCEEEECCCCEEEEE----CHHHCCHHHHHHC--C-EEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 420043786069805960899789992----4343899899766--8-699997883688889999977977399
No 47
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.97 E-value=4.1e-06 Score=59.51 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=40.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC-EEEE--------EEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 9729999888999989999999974898-0599--------82110798998546875222379
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN-FEMS--------ISVTTRVRRPNEVDGKDYYFLSL 68 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~--------v~~TTR~~R~gE~~G~dY~Fvs~ 68 (222)
++++|+|+||.|||||.|+-.|.+..+. +-.+ .+--|=.|.+.|..|+.||+++-
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~ 66 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDI 66 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEE
T ss_conf 9977999898865899999999998799899412688749998688999999981898124345
No 48
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=97.95 E-value=4.4e-05 Score=52.96 Aligned_cols=152 Identities=17% Similarity=0.273 Sum_probs=69.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--EEEE-E----EEEE-C---C--CCCCC-CCCCCCCCCCHHHHH--------HH
Q ss_conf 9999888999989999999974898--0599-8----2110-7---9--89985-468752223799986--------65
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQN--FEMS-I----SVTT-R---V--RRPNE-VDGKDYYFLSLSRFN--------EL 74 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~--~~~~-v----~~TT-R---~--~R~gE-~~G~dY~Fvs~~~F~--------~~ 74 (222)
||-|+|||||||||++++|.+.... .... + -|.+ + + +.+.+ ....+|-|-+.+.|+ ..
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~ 80 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE 80 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98998998571999999999996605877641243179860410244375767651457889789662359999999999
Q ss_pred HHCCEEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHH-----HHHCCCCCHHHHHHHCCCHHHHHHHHH---
Q ss_conf 305524454560457334132112232210122030145234455-----531267415789862132799999998---
Q gi|255764507|r 75 KKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQN-----LHKQMGSNVLSFFILPPTMQELCSRLS--- 146 (222)
Q Consensus 75 i~~~~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~-----l~~~~~~~~~~IFI~pps~e~L~~RL~--- 146 (222)
.++|+=++.- .+++-=|+.... ...+....++|++ |... ++..+ + +.|||.+|.--.|.+|+.
T Consensus 81 Lk~g~~i~~P-~Ydf~~~~r~~~-~~~i~p~~viIvE----Gi~~l~~~~ir~l~--D-~kIfid~~~d~rl~RRi~RD~ 151 (196)
T pfam00485 81 LKEGGSGDKP-IYNHVTGEADPW-PELIEGADILFIE----GLHGLYDERVAQLL--D-LKIYVDPDIDLELIQKIQRDM 151 (196)
T ss_pred HHCCCCEEEE-EEECCCCCCCCC-CEECCCCCEEEEE----CHHHCCCHHHHHHH--C-EEEEEECCCCHHHHHHHHHCH
T ss_conf 7089945765-675134533677-3661788569994----33330327788763--8-479972680199999987345
Q ss_pred -HHCCCCCHHHHHHHHHHHHHHHH-H----HHHHHCCEEEE
Q ss_conf -52011211289999999999999-9----87641897999
Q gi|255764507|r 147 -LRAKKNQEDKEKVQLRLQNAYSE-I----KKWEFYDYVLI 181 (222)
Q Consensus 147 -~R~~~~~d~~e~i~~Rl~~a~~E-~----~~~~~fD~vIv 181 (222)
.||+ +.+.+........-. - .+.++.|.||-
T Consensus 152 ~eRgr----s~~~v~~q~~~v~p~~~~fI~P~k~~ADliI~ 188 (196)
T pfam00485 152 AERGH----SLEGVTDSIERRKPDYVNYICPQFSYADLIIQ 188 (196)
T ss_pred HHHCC----CHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEC
T ss_conf 75199----99999999999725389647478522988970
No 49
>KOG3079 consensus
Probab=97.95 E-value=3.7e-05 Score=53.40 Aligned_cols=173 Identities=17% Similarity=0.291 Sum_probs=91.5
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCC
Q ss_conf 48347972999988899998999999997489805998211079899854687522237999866530552445456045
Q gi|255764507|r 9 LTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHG 88 (222)
Q Consensus 9 ~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g 88 (222)
..+++-+.++||.|| ||||.|++.++.+.++--+++.----|.-+..+ |-+|- ...++.+++|..+-..-.
T Consensus 3 ~~~~~~~IifVlGGP-GsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g----~~I~~~i~~G~iVP~ei~-- 73 (195)
T KOG3079 3 PKLDKPPIIFVLGGP-GSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERG----ALIKEIIKNGDLVPVEIT-- 73 (195)
T ss_pred CCCCCCCEEEEECCC-CCCCCHHHHHHHHHCCCEEECHHHHHHHHHCCC--CCHHH----HHHHHHHHCCCCCCHHHH--
T ss_conf 754579889997689-888226999999976954632879999988054--67678----999999986996748999--
Q ss_pred CCEEEECCHHHHHHHC-CC-C-EEECCCHHHHHHHH---HCCC-CCHHHHHHHCCCHHHHHHHHHHHCCC---CCHHHHH
Q ss_conf 7334132112232210-12-2-03014523445553---1267-41578986213279999999852011---2112899
Q gi|255764507|r 89 NFYGTLRDPIEETISK-GK-D-MLFDIDWQGAQNLH---KQMG-SNVLSFFILPPTMQELCSRLSLRAKK---NQEDKEK 158 (222)
Q Consensus 89 ~~YGt~~~~i~~~l~~-g~-~-~ildid~qG~~~l~---~~~~-~~~~~IFI~pps~e~L~~RL~~R~~~---~~d~~e~ 158 (222)
.+-+.+.+.+ +. . -++|-=|.-..++. +... ..-+++|+..| .|.+.+|+..|+.. .-|+.+.
T Consensus 74 ------~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~es 146 (195)
T KOG3079 74 ------LSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEES 146 (195)
T ss_pred ------HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf ------9999999996577883886589887688999998856787779998688-899999999606657878875577
Q ss_pred HHHHHHHHHHH----HHHHHHCCEEE-EC--CCHHHHHHHHHHHHH
Q ss_conf 99999999999----98764189799-94--988999999999999
Q gi|255764507|r 159 VQLRLQNAYSE----IKKWEFYDYVL-IN--DDLENSLSILKSVIE 197 (222)
Q Consensus 159 i~~Rl~~a~~E----~~~~~~fD~vI-vN--ddle~a~~~L~~iI~ 197 (222)
|.+|+...... +.|...-+.+. +| .+.|+-+.++..+|.
T Consensus 147 ikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079 147 IKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999999987001899998735968875177987889999998740
No 50
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.91 E-value=0.00014 Score=49.68 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE-C----CCCCCCCCCCCCCCCCHHHHHHHH---HCCEEEEEE
Q ss_conf 79729999888999989999999974898059982110-7----989985468752223799986653---055244545
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT-R----VRRPNEVDGKDYYFLSLSRFNELK---KANAFIEKA 84 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT-R----~~R~gE~~G~dY~Fvs~~~F~~~i---~~~~FlE~~ 84 (222)
++|.+|+|.|+||+||+||+..|.. .-++..+++--| | ..-+-|.. =.+-...|.+.. ..+.=.+-.
T Consensus 260 ~~PiiILIGGaSGvGKSTlAseLA~-RLGI~~VIsTDsIREVMR~~is~el~----P~Lh~SSy~Awk~L~~~~~~~~~~ 334 (492)
T PRK12337 260 PRPLHVLLGGVSGTGKSVLAAELAY-RLGITRVVPTDAIREVMRAMVSKDLL----PTLHASTFNAWEALVPPGLGLPGE 334 (492)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHCCHHHC----CHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8876999607888668889999999-60988102544799999984597648----457775568888608734577778
Q ss_pred ECC-CCCEEE---------ECC-HHHHHHHCCCCEEEC---CCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 604-573341---------321-122322101220301---452344555312674157898621327999999985201
Q gi|255764507|r 85 EVH-GNFYGT---------LRD-PIEETISKGKDMLFD---IDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 85 ~~~-g~~YGt---------~~~-~i~~~l~~g~~~ild---id~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
... -..+|. ..+ -|+.++..|.++|++ +-|.=+...... ....+++.|..|+-+..++|...|++
T Consensus 335 ~~~~~vi~GF~~Qv~~V~vGl~aVieRa~~EG~SvVIEGVHLvPg~i~~~~~e-~~~vIp~mV~i~dEe~Hr~RF~~R~r 413 (492)
T PRK12337 335 PTRVELLAGFRDQVQQVSVGLKAVVRRSILEGTSLVLEGVHLVPGYLQHAYQD-GALTVPMLVALPDEEEHRRHFELRDR 413 (492)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHCC-CCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 60768998999999999999999999999728867998333070666666415-87389999984767999999998751
Q ss_pred CCCHHHHHHHHHHHHHHH------H-HHHHHHCCE-EEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 121128999999999999------9-987641897-99949889999999999999887
Q gi|255764507|r 151 KNQEDKEKVQLRLQNAYS------E-IKKWEFYDY-VLINDDLENSLSILKSVIEVERI 201 (222)
Q Consensus 151 ~~~d~~e~i~~Rl~~a~~------E-~~~~~~fD~-vIvNddle~a~~~L~~iI~~er~ 201 (222)
...-. -..+..++.... . ...+..++. ||.|.|+|++..+..++|. ++.
T Consensus 414 ~t~~~-Rp~ekYLk~F~eIR~IQdyLv~rAre~gVPVI~n~~ldesvd~~~evi~-~r~ 470 (492)
T PRK12337 414 ETAAS-RPLHRYMRHFEEIRLMQDHLLRLAREEDVPVLDGETLDESADKAVEVVL-RYV 470 (492)
T ss_pred HHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HHH
T ss_conf 41036-8601799979999999999999998749982078766779999999999-999
No 51
>PRK13946 shikimate kinase; Provisional
Probab=97.90 E-value=7.7e-05 Score=51.39 Aligned_cols=156 Identities=14% Similarity=0.152 Sum_probs=74.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCC--CCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 729999888999989999999974898059982110798998546875--222--3799986653055244545604573
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYF--LSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~F--vs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
.+-|+|+|+.||||+|+-+.|.+.. ++.|+=+- .-. -+..|.. -.| ..++.|.++... .+. +..
T Consensus 20 kknIvLIG~mGsGKStvGk~LA~~L-~~~fiD~D--~~I--E~~~g~sI~eIF~~~GE~~FR~~E~~--~l~--~l~--- 87 (195)
T PRK13946 20 KRTVVLVGLMGAGKSTVGRRLATML-GLPFLDAD--TEI--ERAARMTIPEIFATYGEPEFRDLERR--VIA--RLL--- 87 (195)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEEECH--HHH--HHHHCCCHHHHHHHHCHHHHHHHHHH--HHH--HHH---
T ss_conf 9958998999998899999999997-97989885--999--99809989999998697999998999--999--986---
Q ss_pred EEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC----CCHHHHHHHHHHHHH
Q ss_conf 3413211223221012203014523445553126741578986213279999999852011----211289999999999
Q gi|255764507|r 91 YGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK----NQEDKEKVQLRLQNA 166 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~----~~d~~e~i~~Rl~~a 166 (222)
..-..+++.|--+++. ......|++ ..++||+.+ +.+.+.+|+.....+ +.+..+.+..-++
T Consensus 88 -----~~~~~VIstGGG~v~~--~~n~~~L~~----~g~vI~L~~-~~e~l~~Rl~~~~~RPLl~~~~~~~~l~~l~~-- 153 (195)
T PRK13946 88 -----KGGPLVLATGGGAFMN--EETRAAIRE----KGISVWLKA-DLDVLWERVSRRDTRPLLRTADPKETLARLME-- 153 (195)
T ss_pred -----CCCCEEEECCCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--
T ss_conf -----4898799758742368--999999995----796899849-99999999728999998999887999999999--
Q ss_pred HHHHHHHHHCCEEEECCC--HHHHHHHHHHHHH
Q ss_conf 999987641897999498--8999999999999
Q gi|255764507|r 167 YSEIKKWEFYDYVLINDD--LENSLSILKSVIE 197 (222)
Q Consensus 167 ~~E~~~~~~fD~vIvNdd--le~a~~~L~~iI~ 197 (222)
..+--|. ..|++|..++ .++..+++.+.|.
T Consensus 154 ~R~~lY~-~Ad~~I~t~~~s~~~ia~eIi~~L~ 185 (195)
T PRK13946 154 ERYPVYA-QADLTVESRDVPHEVIADEVIEALA 185 (195)
T ss_pred HHHHHHH-HCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999999-7898988998999999999999999
No 52
>PRK12338 hypothetical protein; Provisional
Probab=97.89 E-value=6.2e-05 Score=51.98 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=84.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE-CC----CCCCCCCCCCCCCCC-HHHHHHHHHCCEEEEEE-
Q ss_conf 479729999888999989999999974898059982110-79----899854687522237-99986653055244545-
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT-RV----RRPNEVDGKDYYFLS-LSRFNELKKANAFIEKA- 84 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT-R~----~R~gE~~G~dY~Fvs-~~~F~~~i~~~~FlE~~- 84 (222)
+++|.+|+|+|+||+||+||+-.|..+ -++..+++--+ |. -=..|..-. -|.| =..-+.+.....+..-.
T Consensus 1 mr~PliILiGGtSGvGKSTlAseLAsR-LgI~tvIsTDsIRevmR~~is~e~~P~--L~~STY~A~~~Lr~~~~~~~~~~ 77 (320)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASEVARR-LNIKHLIETDFIREVVRGIIGKEYAPA--LHMSSYNAYTALRDKDHFVPKRF 77 (320)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-CCCCEEECCHHHHHHHHHHCCHHHCCH--HHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 997679997068887688899999985-198711033479999998338041534--55420267887267423577411
Q ss_pred ---ECCC-----C--CEEEECCHHHHHHHCCCCEEEC---CCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf ---6045-----7--3341321122322101220301---4523445553126741578986213279999999852011
Q gi|255764507|r 85 ---EVHG-----N--FYGTLRDPIEETISKGKDMLFD---IDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK 151 (222)
Q Consensus 85 ---~~~g-----~--~YGt~~~~i~~~l~~g~~~ild---id~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~ 151 (222)
-..| . .-|.- .-|..++..|.++|++ +.| |.-..........+++||.....+..++|...|++.
T Consensus 78 ~~~vi~Gfe~q~e~V~~~le-~vI~r~~~~~~sivIEGVHLvP-gfi~~~~~~~~~~i~F~i~~~~E~kH~eRF~~Rak~ 155 (320)
T PRK12338 78 EELVIAGFEEHASFVIPAIE-KVIKRAVTDADDIVIEGVHLVP-GLINIEQFYEYANIHFFILYADEEEHKERFVKRAME 155 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCEEEEEEEECH-HHCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 67899999999899999999-9999998648867998453055-550576622666636999981768999999999988
Q ss_pred CCHHHHHH----HHHHHHHHHHHHHHHHCCE-EEECCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21128999----9999999999987641897-999498899999999999998874434576
Q gi|255764507|r 152 NQEDKEKV----QLRLQNAYSEIKKWEFYDY-VLINDDLENSLSILKSVIEVERIRRHRLKN 208 (222)
Q Consensus 152 ~~d~~e~i----~~Rl~~a~~E~~~~~~fD~-vIvNddle~a~~~L~~iI~~er~~~~~~~~ 208 (222)
-+....-+ +.|+-... =.+.+..+.. +|.|.++|.++.++.+.|. +-++.-...+
T Consensus 156 m~r~~Kyvkyf~niR~Iqd~-L~~~Adeh~iP~I~N~nid~sV~~i~~~I~-~~~~~~~~~h 215 (320)
T PRK12338 156 IKRGGKHLEYFRENRIIHDF-LVSQADEHGIPVIKNDDIDRTVSKVLSVIR-EVSVVVKLVH 215 (320)
T ss_pred HHCCCCHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HHHEEEECCC
T ss_conf 50265089999988999999-984167619973047635568999999999-8734652267
No 53
>PRK13947 shikimate kinase; Provisional
Probab=97.89 E-value=5.1e-05 Score=52.55 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=74.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCC--CCHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 999888999989999999974898059982110798998546875--222--3799986653055244545604573341
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYF--LSLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~F--vs~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
|+|+|+.||||||+-+.|.+.. ++.|.= |-.-.- +..|.. =.| ..++.|.+.... .+. +..
T Consensus 4 I~LiG~mGsGKTtiGk~La~~L-~~~fiD--~D~~Ie--~~~g~sI~eIf~~~GE~~FR~~E~~--~l~--~~~------ 68 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKKVATTL-SFGFID--TDKEIE--KMAGMTVSEIFEKDGEVRFRSLEKA--AVR--KAA------ 68 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEE--CHHHHH--HHCCCCHHHHHHHHCHHHHHHHHHH--HHH--HHC------
T ss_conf 8997999998899999999997-969898--749999--8829988999998489999999999--999--740------
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHH
Q ss_conf 32112232210122030145234455531267415789862132799999998520112----11289999999999999
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKN----QEDKEKVQLRLQNAYSE 169 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~----~d~~e~i~~Rl~~a~~E 169 (222)
..-..+++.|--+++. ......|++ ...+||+.+| .+.+.+|+.....+. .+..+.+..-++ +.+
T Consensus 69 --~~~~~VistGGG~v~~--~~n~~~l~~----~g~vi~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~l~~l~~--~R~ 137 (171)
T PRK13947 69 --RLKNLVIATGGGVVLN--PENIVQLRK----NGVLICLVAR-PEVILRRIKKKKDRPLLMVGNPEERIRELLK--ERE 137 (171)
T ss_pred --CCCCEEEECCCCCCCC--HHHHHHHHH----CCEEEEECCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH--HHH
T ss_conf --3689799789850069--999999996----8989997399-9999999728999997989987999999999--999
Q ss_pred HHHHHHCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 98764189799949--88999999999999
Q gi|255764507|r 170 IKKWEFYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 170 ~~~~~~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
--| ...|++|..+ +.++.++++...+.
T Consensus 138 ~~Y-~~Ad~~I~~~~~s~~ei~~~Ii~~~~ 166 (171)
T PRK13947 138 PFY-RFADFTIDTSDMTIDEVAEEIIKAYI 166 (171)
T ss_pred HHH-HHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999-97698988998999999999999999
No 54
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.86 E-value=9.1e-05 Score=50.93 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEE--EECCCCCCC-CCCCCCCCCCHHHHHHHHHCCEEEE-EEECC
Q ss_conf 9729999888999989999999974898--0599821--107989985-4687522237999866530552445-45604
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN--FEMSISV--TTRVRRPNE-VDGKDYYFLSLSRFNELKKANAFIE-KAEVH 87 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~--~~~~v~~--TTR~~R~gE-~~G~dY~Fvs~~~F~~~i~~~~FlE-~~~~~ 87 (222)
.|+||+|-|+|.|||+||++.|....+. +.+++=+ -..|+|... -+|.. |. +..-+ .+...
T Consensus 1 ~G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--------~~-----~~~~~~~g~~~ 67 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--------FD-----GDGGVSPGPEF 67 (175)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--------CC-----CCCCCCCCHHH
T ss_conf 974999868998988999999998476756884185898867631368754223--------48-----77663541569
Q ss_pred CCCEEEECCHHHHHHHCCCCEEECCCHHH---HHHH-HHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 57334132112232210122030145234---4555-3126741578986213279999999852011211289999999
Q gi|255764507|r 88 GNFYGTLRDPIEETISKGKDMLFDIDWQG---AQNL-HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRL 163 (222)
Q Consensus 88 g~~YGt~~~~i~~~l~~g~~~ildid~qG---~~~l-~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl 163 (222)
.-.|.--..+|......|.++|+|-=.-+ .... +...+.+++.|=|.+| .+++++|-..||-+-.- +
T Consensus 68 ~~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~-l~~l~~RE~~RgDR~~G--------~ 138 (175)
T cd00227 68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG--------Q 138 (175)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC--------H
T ss_conf 99999999999999977998898631238088999999857992799998789-99999998745899964--------6
Q ss_pred HHHHHHHHHH-HHCCEEEEC--CCHHHHHHHHHH
Q ss_conf 9999999876-418979994--988999999999
Q gi|255764507|r 164 QNAYSEIKKW-EFYDYVLIN--DDLENSLSILKS 194 (222)
Q Consensus 164 ~~a~~E~~~~-~~fD~vIvN--ddle~a~~~L~~ 194 (222)
++.+.+.-|. ..||..|-- ...+++-++|..
T Consensus 139 A~~q~~~VH~~~~YDleVDTs~~sp~eCA~~I~~ 172 (175)
T cd00227 139 ARKQARVVHAGVEYDLEVDTTHKTPIECARAIAA 172 (175)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 7889998435998856877999999999999999
No 55
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.85 E-value=2.1e-05 Score=55.02 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH---HHCCEEEEEEEC
Q ss_conf 4797299998889999899999999748980599821107989985--46875222379998665---305524454560
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL---KKANAFIEKAEV 86 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~---i~~~~FlE~~~~ 86 (222)
.++|..+.|+||||+|||||.+.|+..++ |..|+ .||+|..=++.+...+. +.++-|+-.+.+
T Consensus 364 i~~Ge~vaiVG~SGsGKSTL~~LL~r~yd------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~TI 431 (575)
T PRK11160 364 IKAGEKVALLGRTGCGKSTLLQLLTRAWD------------PQQGEILLNGQPIASYSEAALRQAISVVSQRVHLFSGTL 431 (575)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 76998899988999759999999862367------------899889999897563888999876135677760258867
Q ss_pred CCCC-EEEE---CCHHHHHHHC-CCCEEECCCHHHHHH
Q ss_conf 4573-3413---2112232210-122030145234455
Q gi|255764507|r 87 HGNF-YGTL---RDPIEETISK-GKDMLFDIDWQGAQN 119 (222)
Q Consensus 87 ~g~~-YGt~---~~~i~~~l~~-g~~~ildid~qG~~~ 119 (222)
.+|. ||-+ -+++..+++. |..-++.. |+|..+
T Consensus 432 ~eNi~~g~~~atdee~~~al~~a~l~~~~~~-p~GldT 468 (575)
T PRK11160 432 RDNLLLAAPNATDEALIEVLQQVGLEKLLEG-DKGLDA 468 (575)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHC-CCCCCC
T ss_conf 8998725898789999999975370645636-765345
No 56
>PRK00625 shikimate kinase; Provisional
Probab=97.81 E-value=0.00011 Score=50.49 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCC--CCCCCCC--CCCCC--CCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 999888999989999999974898059982110798--9985468--75222--37999866530552445456045733
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVR--RPNEVDG--KDYYF--LSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~--R~gE~~G--~dY~F--vs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
|+|+|+.||||+|+-+.|.+.. ++.|+=+ -+-. +.|..-+ +.-.| ..++.|.++.. +.++ . .
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l-~~~FvD~--D~~Ie~~~~~~i~~Si~eIf~~~GE~~FR~~E~--~~l~-----~-l- 70 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL-SLPFFDT--DDLIVSNYHGALYSSPKEIYQAYGEEGFCEEEA--LALE-----S-L- 70 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEEC--HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHH--HHHH-----H-H-
T ss_conf 9998999998899999999993-9995774--999999868652356999999718999999999--9999-----7-3-
Q ss_pred EEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 41321122322101220301452344555312674157898621327999999985201121-12899999999999999
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQ-EDKEKVQLRLQNAYSEI 170 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~-d~~e~i~~Rl~~a~~E~ 170 (222)
+.+ ..+++.|--+++. ++....|++. ..+||+.+| .+.+.+|+.+|..... +..+.+..-+ .+..-
T Consensus 71 --~~~--~~VIstGGG~v~~--~~n~~~Lk~~----g~vV~L~~~-~e~i~~Rl~~rpl~~~~~~~~~l~~l~--~eR~~ 137 (173)
T PRK00625 71 --PVI--PSIVALGGGTLMH--EESYDHIRNR----GLLVLLSLP-IATIYQRLQKRGLPERLKKTPSLEEIL--TQRID 137 (173)
T ss_pred --CCC--CCEEECCCCCCCC--HHHHHHHHHC----CEEEEEECC-HHHHHHHHHCCCCCCCCCCHHHHHHHH--HHHHH
T ss_conf --248--9689748850178--9999999968----999998399-999999982699877788357999999--99999
Q ss_pred HHHHHCCEEEECCCHHHHH
Q ss_conf 8764189799949889999
Q gi|255764507|r 171 KKWEFYDYVLINDDLENSL 189 (222)
Q Consensus 171 ~~~~~fD~vIvNddle~a~ 189 (222)
.|....|++|.+|++..|-
T Consensus 138 lY~~~AD~iI~~d~~sit~ 156 (173)
T PRK00625 138 RMREIADYIFSLDHVALTS 156 (173)
T ss_pred HHHHHCCEEEECCCCCCCC
T ss_conf 9999799999689976132
No 57
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.80 E-value=2.2e-05 Score=54.87 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC-CHHHHHHHHHHHHH
Q ss_conf 898621327999999985201121128999999999999998764189799949-88999999999999
Q gi|255764507|r 130 SFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLIND-DLENSLSILKSVIE 197 (222)
Q Consensus 130 ~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~~fD~vIvNd-dle~a~~~L~~iI~ 197 (222)
+|+|.+| .+.-.+|+..|.. -+.+.+..|++.-..+-......|+||.|+ ++++...++..++.
T Consensus 129 vi~V~a~-~~~r~~Rl~~R~~---~~~~~~~~r~~~Q~~~~~k~~~aD~vI~N~~s~e~l~~qi~~il~ 193 (199)
T PRK00081 129 VLVVDVP-PEIQLERLMARDG---LSEEEAEAILASQMSREEKLARADDVIDNNGDLEDLRKQVERLLA 193 (199)
T ss_pred EEEEECC-HHHHHHHHHHCCC---CCHHHHHHHHHHCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 7999869-9999999997489---989999999995899899999699999899999999999999999
No 58
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.80 E-value=0.00021 Score=48.58 Aligned_cols=150 Identities=20% Similarity=0.229 Sum_probs=78.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCCC--CHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 9729999888999989999999974898059982110798998546875--2223--79998665305524454560457
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYFL--SLSRFNELKKANAFIEKAEVHGN 89 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~Fv--s~~~F~~~i~~~~FlE~~~~~g~ 89 (222)
|..=|+|+|..|+||+||-+.|.+.. ++.|+= |.+..- +..|.. -.|- .++.|..+.
T Consensus 132 ~~~rIaLIGlmGaGKSTvGr~LA~~L-g~pFvD--lD~~IE--k~aG~sI~eIFa~~GE~~FR~~E-------------- 192 (304)
T PRK08154 132 RRPRIALIGLRGAGKSTLGRMLAARL-GVPFVE--LNREIE--REAGLSVSEIFALYGQEGYRRLE-------------- 192 (304)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEE--CHHHHH--HHHCCCHHHHHHHHCHHHHHHHH--------------
T ss_conf 77847988999998889999999995-989778--779999--99299999999986889999999--------------
Q ss_pred CEEEECCHHHHHH--------HCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCC-----CCCHHH
Q ss_conf 3341321122322--------101220301452344555312674157898621327999999985201-----121128
Q gi|255764507|r 90 FYGTLRDPIEETI--------SKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAK-----KNQEDK 156 (222)
Q Consensus 90 ~YGt~~~~i~~~l--------~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~-----~~~d~~ 156 (222)
.+.+...+ +.|--+++ ++.-...|+. ..++||+.+ |.+++-+|+...+. .+.+..
T Consensus 193 -----~~~L~~ll~~~~~~VIAtGGGiV~--~~~n~~~L~~----~g~vVwL~a-spe~l~~Rv~~~gd~RPLl~~~~a~ 260 (304)
T PRK08154 193 -----RRALERLIAEHEEMVLATGGGIVS--EPATFDLLLS----HCYTVWLKA-SPEEHMARVRAQGDLRPMADNREAM 260 (304)
T ss_pred -----HHHHHHHHHCCCCEEEEECCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf -----999999871169989972872127--8899999996----898999979-9999999986489999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 999999999999998764189799949--88999999999999
Q gi|255764507|r 157 EKVQLRLQNAYSEIKKWEFYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 157 e~i~~Rl~~a~~E~~~~~~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
+.+..-++ ..+--| ..-|++|.-+ .+++++++|..++.
T Consensus 261 e~L~~ll~--~R~plY-~~AD~~IdTsg~tvees~~~L~~lv~ 300 (304)
T PRK08154 261 EDLRRILA--SREPLY-ARADAVVDTSGLTVEASLARLRELVR 300 (304)
T ss_pred HHHHHHHH--HHHHHH-HHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999--878899-86898987999999999999999999
No 59
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.79 E-value=0.00037 Score=47.01 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 797299998889999899999999748980599
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
+|+-+|.|-|||||||+|+++.|.+.. +|.+.
T Consensus 282 ~~~~IIAIDGPAgSGKSTvAK~lA~~L-~~~yL 313 (512)
T PRK13477 282 KRRPIIAIDGPAGAGKSTVTRAVAKKL-GLLYL 313 (512)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH-CCCEE
T ss_conf 788779986787578789999999981-99686
No 60
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.77 E-value=0.00012 Score=50.18 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEE----EEECCCCC-CCCCCCCCCCCCHHHHHH--H------HHCC
Q ss_conf 7972999988899998999999997489-8059982----11079899-854687522237999866--5------3055
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSIS----VTTRVRRP-NEVDGKDYYFLSLSRFNE--L------KKAN 78 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~----~TTR~~R~-gE~~G~dY~Fvs~~~F~~--~------i~~~ 78 (222)
+++.+|-|+|+|||||+|++++|.+..+ ....+++ |-....++ .|..+.+|. ..+.|+- + +.+|
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d--~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYD--HPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCHHHCCCCCCC--CHHHHCHHHHHHHHHHHHCC
T ss_conf 7669999867987788999999999828675247652232025301667553785744--82343689999999999769
Q ss_pred EEEEEEECCCCCEEEECCHHHHH-HHCCCCEEECCCHHHHHHH-----HHCCCCCHHHHHHHCCCHHHHHHHHH----HH
Q ss_conf 24454560457334132112232-2101220301452344555-----31267415789862132799999998----52
Q gi|255764507|r 79 AFIEKAEVHGNFYGTLRDPIEET-ISKGKDMLFDIDWQGAQNL-----HKQMGSNVLSFFILPPTMQELCSRLS----LR 148 (222)
Q Consensus 79 ~FlE~~~~~g~~YGt~~~~i~~~-l~~g~~~ildid~qG~~~l-----~~~~~~~~~~IFI~pps~e~L~~RL~----~R 148 (222)
+=++- -++++-=||-.. ..+ +...+++|++ |..-+ +..+. +.|||.+|.-..+.+|+. .|
T Consensus 84 ~~v~~-P~yd~~~~~r~~--~~i~~~p~~VIIvE----Gi~~l~d~~lr~~~d---~kIfvdt~~D~RliRri~RD~~~r 153 (218)
T COG0572 84 KPVDL-PVYDYKTHTREP--ETIKVEPNDVVIVE----GILLLYDERLRDLMD---LKIFVDTDADVRLIRRIKRDVQER 153 (218)
T ss_pred CCCCC-CCCCHHCCCCCC--CCCCCCCCCEEEEE----CCCCCCCHHHHHHCC---EEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 92245-642031363257--73313897289994----230015076776606---789997783278899888779881
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0112112899999999
Q gi|255764507|r 149 AKKNQEDKEKVQLRLQ 164 (222)
Q Consensus 149 ~~~~~d~~e~i~~Rl~ 164 (222)
|. +-+..+++-..
T Consensus 154 g~---~~~~vi~qy~~ 166 (218)
T COG0572 154 GR---DLESVIEQYVK 166 (218)
T ss_pred CC---CHHHHHHHHHH
T ss_conf 99---98999999998
No 61
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=97.76 E-value=1.9e-05 Score=55.26 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=76.0
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE-----C
Q ss_conf 88899998999999997489805998211079899854687522237999866530552445456045733413-----2
Q gi|255764507|r 21 SSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL-----R 95 (222)
Q Consensus 21 ~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~-----~ 95 (222)
=|+-||||+|+++.|.+....-+..+ ++||+|..... |. ........+.-+. ......+|-.. .
T Consensus 2 EGiDGsGKsTq~~~L~~~L~~~g~~v-~~~~ep~~~~~-g~--------~ir~~l~~~~~~~-~~~~~llf~adR~~~~~ 70 (186)
T pfam02223 2 EGLDGAGKTTQAELLKERLKEQGIKV-VLTREPGGTPI-GE--------KIRELLLRNEELS-PLTEALLFAADRIEHLE 70 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEE-EEEECCCCCHH-HH--------HHHHHHHCCCCCC-HHHHHHHHHHHHHHHHH
T ss_conf 79999899999999999999879908-99749999837-99--------9999985012589-99999999999999999
Q ss_pred CHHHHHHHCCCCEEECCC------HHHHH---------HHHHCC---CCCHHHHHHHCCCHHHHHHHHHHHCCCCCHH--
Q ss_conf 112232210122030145------23445---------553126---7415789862132799999998520112112--
Q gi|255764507|r 96 DPIEETISKGKDMLFDID------WQGAQ---------NLHKQM---GSNVLSFFILPPTMQELCSRLSLRAKKNQED-- 155 (222)
Q Consensus 96 ~~i~~~l~~g~~~ildid------~qG~~---------~l~~~~---~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~-- 155 (222)
..|...+.+|++||+|== .||+. .+.... ..+ ++||+..| .++..+|+..|+..+...
T Consensus 71 ~~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~PD-lti~Ldv~-pe~~~~Ri~~R~~~~~~e~e 148 (186)
T pfam02223 71 EKIKPALKQGKTVICDRYLFSSIAYQGAAGGLGLDLVLSLNPDVPGPKPD-LTFLLDVD-PEVALKRLRRRGELDEFEFE 148 (186)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-EEEEEECC-HHHHHHHHHHCCCCCHHHHC
T ss_conf 99999997699899607313489987620477899999998720678999-89998389-99999999866875627651
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEC--CCHHHHHHH
Q ss_conf 899999999999999876418979994--988999999
Q gi|255764507|r 156 KEKVQLRLQNAYSEIKKWEFYDYVLIN--DDLENSLSI 191 (222)
Q Consensus 156 ~e~i~~Rl~~a~~E~~~~~~fD~vIvN--ddle~a~~~ 191 (222)
......++.....++.. ..-.+++++ .+.++-.++
T Consensus 149 ~~~~~~kv~~~Y~~l~~-~~~~~~~IDa~~~i~ev~~~ 185 (186)
T pfam02223 149 QLDFLRKVRERYLELAK-DDERILIIDASNSIEEVHEE 185 (186)
T ss_pred CHHHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHH
T ss_conf 79999999999999976-99978998799999999704
No 62
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.76 E-value=4.2e-05 Score=53.05 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=50.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 34797299998889999899999999748980599821107989985468752223799986653055244545604573
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
..++|-+.+|+||.|||||||.+.|+ .+|.+..+-=..+ -+|+| +..=+=++..++|-||-+ ++--.-
T Consensus 22 ~v~~GE~HAiMGPNGsGKSTL~~~ia-Ghp~y~vt~G~I~-------f~G~D---ll~l~~~ERAR~GlFLaF-Q~P~EI 89 (248)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIA-GHPKYEVTSGTIL-------FKGQD---LLELEPDERARAGLFLAF-QYPEEI 89 (248)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-CCCCEEEEEEEEE-------ECCEE---CCCCCHHHHHCCCCEECC-CCCCCC
T ss_conf 21685179986889984788877761-7993378420898-------77652---001896556405651015-888556
Q ss_pred EEEE
Q ss_conf 3413
Q gi|255764507|r 91 YGTL 94 (222)
Q Consensus 91 YGt~ 94 (222)
=|++
T Consensus 90 PGV~ 93 (248)
T TIGR01978 90 PGVS 93 (248)
T ss_pred CCCC
T ss_conf 8857
No 63
>PRK07261 topology modulation protein; Provisional
Probab=97.75 E-value=3.6e-05 Score=53.50 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=46.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECC-CCCCCCCCCCCCCCCHHHHHHHHHCCEEE--EEEECCCCCEEEE
Q ss_conf 99988899998999999997489805998211079-89985468752223799986653055244--5456045733413
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRV-RRPNEVDGKDYYFLSLSRFNELKKANAFI--EKAEVHGNFYGTL 94 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~-~R~gE~~G~dY~Fvs~~~F~~~i~~~~Fl--E~~~~~g~~YGt~ 94 (222)
|+|+|+||||||||+++|.+.. ++ ++-|.-.- =.||-. -.++++|.+.+++ |+ +-|-..|||..|.
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~-~i--p~~~LD~l~w~p~w~------~~~~~e~~~~~~~--~~~~~~WIiDGny~~~~ 71 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHY-NC--PVLHLDQLHFSSNWQ------ERDDDDMIADISN--FLLKQDWIIEGNYSNCL 71 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CC--CEEEECCEEECCCCE------ECCHHHHHHHHHH--HHHCCCEEEECCCCCHH
T ss_conf 9998899986899999999987-97--979702278889998------8889999999999--98489879947851247
Q ss_pred CCHHHHHHHCCCCEEECCC
Q ss_conf 2112232210122030145
Q gi|255764507|r 95 RDPIEETISKGKDMLFDID 113 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid 113 (222)
.+. ..-.+..++.||+.
T Consensus 72 ~~~--rl~~aD~iI~Ld~p 88 (171)
T PRK07261 72 YEE--RMAEADQIIFLNFS 88 (171)
T ss_pred HHH--HHHHCCEEEEECCC
T ss_conf 776--79779999998584
No 64
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.75 E-value=5.5e-05 Score=52.35 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=52.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH---HHCCEEEEEEECC
Q ss_conf 797299998889999899999999748980599821107989985--46875222379998665---3055244545604
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL---KKANAFIEKAEVH 87 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~---i~~~~FlE~~~~~ 87 (222)
++|..+.|+||||+||+||.+.|+...|. .|+ .||+|..-++.+...+. +.++-++-.+.+.
T Consensus 374 ~~Ge~vaIVG~SGsGKSTl~~LL~g~~p~-------------~G~I~i~g~di~~i~~~~lr~~i~~V~Q~~~LF~~TI~ 440 (588)
T PRK11174 374 PAGQRVALVGPSGAGKTSLLNALLGFLPY-------------QGSLKINGIELRELDPESWRKHLSWVGQNPQLFHGTLR 440 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-------------CCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHH
T ss_conf 49978999899986499999999872898-------------83899999860308999999660351666777766299
Q ss_pred CCC-EEEE---CCHHHHHHH
Q ss_conf 573-3413---211223221
Q gi|255764507|r 88 GNF-YGTL---RDPIEETIS 103 (222)
Q Consensus 88 g~~-YGt~---~~~i~~~l~ 103 (222)
.|. ||-+ .+++..+++
T Consensus 441 eNI~~g~~~atdeei~~A~~ 460 (588)
T PRK11174 441 DNVLLANPDASDEQLQQALE 460 (588)
T ss_pred HHHHCCCCCCCHHHHHHHHH
T ss_conf 86533585433457999999
No 65
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.75 E-value=6.2e-05 Score=52.01 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 34797299998889999899999999748980599821107989985468752223799986653055244545604573
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
...+|+.|++.|++||||+++.+.++.....-.+++ +|+=+|. --..+|..+...+..--...++..-
T Consensus 8 ~~~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~-----------In~D~~r-~~~P~y~~l~~~~~~~~~~~~~~~a 75 (191)
T pfam06414 8 PQERPVAVLLGGQPGAGKTELARALLEELGGGNVVR-----------IDPDELR-TYHPDYDELQKADPKDASELTQPDA 75 (191)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE-----------ECCHHHH-HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 876987999957998888999999987537899389-----------7135878-8777478655407677899989999
Q ss_pred EEEECCHHHHHHHCCCCEEECCCHH---HH----HHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 3413211223221012203014523---44----55531267415789862132799999998520
Q gi|255764507|r 91 YGTLRDPIEETISKGKDMLFDIDWQ---GA----QNLHKQMGSNVLSFFILPPTMQELCSRLSLRA 149 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~~~ildid~q---G~----~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~ 149 (222)
--.....++.+++.+.++|+|-... -+ +.+++ .+..+..+||..| .+.=..|...|.
T Consensus 76 ~~~~~~~~~~a~~~r~n~iiegT~~~~~~~~~~~~~lk~-~GY~v~v~~Va~~-~e~S~~r~~~Ry 139 (191)
T pfam06414 76 SRWVEKLIDYAIERGYNIILEGTLRSPDVARKLARKLKA-AGYEVEVYVVAVP-PELSWLGVLDRY 139 (191)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH-CCCEEEEEEEECC-HHHHHHHHHHHH
T ss_conf 999999999999759998985777897999999999997-8997999999889-999999999999
No 66
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.73 E-value=0.00019 Score=48.85 Aligned_cols=150 Identities=16% Similarity=0.206 Sum_probs=73.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC-------CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 999888999989999999974898059982110798998-------5468752223799986653055244545604573
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN-------EVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g-------E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
|+|+|+.||||+|+.+.|.+.. ++.|+=+-.-=..+.| +..|+ +.|.+... +.+.. .
T Consensus 5 I~LiG~mGsGKstiGk~LA~~L-~~~fiD~D~~Ie~~~g~sI~eif~~~Ge-------~~FR~~E~--~~l~~--l---- 68 (172)
T PRK03731 5 LFLVGPRGCGKTTVGMALAQAL-GYRFVDTDLWLQSTLQMTVAEIVEREGW-------AGFRARES--AALEA--V---- 68 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHCCCHHHHHHHHCH-------HHHHHHHH--HHHHH--H----
T ss_conf 8998899998899999999985-9997978699998839899999998398-------99999999--99998--4----
Q ss_pred EEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH---CCC----CCHHHHHHHHHH
Q ss_conf 3413211223221012203014523445553126741578986213279999999852---011----211289999999
Q gi|255764507|r 91 YGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLR---AKK----NQEDKEKVQLRL 163 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R---~~~----~~d~~e~i~~Rl 163 (222)
+. -..+++.|--+++. ++....|++ ...+||+.+ +.+.+.+|+... +.+ +.+..+.+..-+
T Consensus 69 ---~~--~~~VIstGGG~v~~--~~n~~~L~~----~g~vv~L~~-~~~~l~~Rl~~~~~~~~RPll~~~~~~~~i~~l~ 136 (172)
T PRK03731 69 ---TA--PSTVVATGGGIILT--EENRAFMRN----NGIVIYLCA-PVSVLANRLEADPEEDQRPTLTGKPLSEEVAEVL 136 (172)
T ss_pred ---CC--CCEEEEECCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf ---27--88289807864268--999999996----899999979-9999999981387789898788998799999999
Q ss_pred HHHHHHHHHHHHCCEEEECC-CHHHHHHHHHHHHH
Q ss_conf 99999998764189799949-88999999999999
Q gi|255764507|r 164 QNAYSEIKKWEFYDYVLIND-DLENSLSILKSVIE 197 (222)
Q Consensus 164 ~~a~~E~~~~~~fD~vIvNd-dle~a~~~L~~iI~ 197 (222)
+ +.+--|...-|++|.++ +.++.++++.+.+.
T Consensus 137 ~--~R~~~Y~~~a~~ii~~~~~~~~i~~~Il~~L~ 169 (172)
T PRK03731 137 A--ERDALYREVAHHIIDATQPPSQVVSEILSALA 169 (172)
T ss_pred H--HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 9--99999998489988798999999999999873
No 67
>PRK07933 thymidylate kinase; Validated
Probab=97.73 E-value=7.9e-05 Score=51.30 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=89.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHCCEEE--------EEEEC
Q ss_conf 29999888999989999999974898059982110798998-5468752223799986653055244--------54560
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN-EVDGKDYYFLSLSRFNELKKANAFI--------EKAEV 86 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g-E~~G~dY~Fvs~~~F~~~i~~~~Fl--------E~~~~ 86 (222)
++|++=|.-||||+|.++.|.+....-...+ .+||.|+.| +.-|. ....... +.+- +.--|
T Consensus 1 m~I~fEGiDGsGKSTq~~~L~~~L~~~g~~v-~~~reP~~g~~~~g~--------~ir~~l~-~~~~~~~~~~~~~~lLf 70 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEAAGRSV-ATLAFPRYGRSVHAD--------LAAEALH-GRHGDLADSVYAMATLF 70 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE-EEEECCCCCCCHHHH--------HHHHHHC-CCCCCCCCCHHHHHHHH
T ss_conf 9899988999989999999999999779907-998468999984899--------9999980-88777657779999999
Q ss_pred CCCCEEEECCHHHHHHHCCCCEEECCC------HHHHH-----------HHHH----CC---CCCHHHHHHHCCCHHHHH
Q ss_conf 457334132112232210122030145------23445-----------5531----26---741578986213279999
Q gi|255764507|r 87 HGNFYGTLRDPIEETISKGKDMLFDID------WQGAQ-----------NLHK----QM---GSNVLSFFILPPTMQELC 142 (222)
Q Consensus 87 ~g~~YGt~~~~i~~~l~~g~~~ildid------~qG~~-----------~l~~----~~---~~~~~~IFI~pps~e~L~ 142 (222)
-.+.+- ..+.|..+++.|++||.|== .||++ .+.. .+ ..+ ++||+..| .++-.
T Consensus 71 aadR~~-~~~~I~paL~~G~~VI~DRy~~Ss~AYQ~a~~~~~~~~~~~~~i~~l~~~~~~~~~PD-lti~lDv~-~e~a~ 147 (213)
T PRK07933 71 ALDRAG-ARDELAGLVAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPD-LQVLLDVP-AELAA 147 (213)
T ss_pred HHHHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-EEEEECCC-HHHHH
T ss_conf 999999-9999999997889899817430689861101468754268999999987750799998-68895389-99999
Q ss_pred HHHHHHCCCC-------CHHHHHHHHHHHHHHHHHHHHHHC-CEEEEC--CCHHHHHHHHHHHH
Q ss_conf 9998520112-------112899999999999999876418-979994--98899999999999
Q gi|255764507|r 143 SRLSLRAKKN-------QEDKEKVQLRLQNAYSEIKKWEFY-DYVLIN--DDLENSLSILKSVI 196 (222)
Q Consensus 143 ~RL~~R~~~~-------~d~~e~i~~Rl~~a~~E~~~~~~f-D~vIvN--ddle~a~~~L~~iI 196 (222)
+|+..|+... .|.+.....|+..+..++...++- -+++|+ .+.|+-.+++.+.+
T Consensus 148 ~R~~~R~~~~~~~~~Dr~E~~~~f~~rVr~~y~~lA~~~~p~R~~vIDa~~~~e~V~~~I~~~l 211 (213)
T PRK07933 148 ERARRRAARDADRARDAYERDDGLQQRTGAVYAELAARGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 9998324566664213023048999999999999997257998899819999999999999874
No 68
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=97.72 E-value=5.7e-05 Score=52.22 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=37.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7972999988899998999999997489-8059982110798998546875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~ 74 (222)
+.|.|+.|.|+||||||||++.|....+ +....-+..+ +||.- ++.++|.++
T Consensus 56 ~~GeLlA~mGsSGAGKTTLmn~La~R~~~g~~~~g~~v~-------lNG~~---~~~~~~~~~ 108 (671)
T TIGR00955 56 KPGELLAIMGSSGAGKTTLMNALAFRSPKGLKVSGSVVL-------LNGRP---IDAKEMRAI 108 (671)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCEEE-------ECCEE---CCHHHHHHH
T ss_conf 067068984787662689999985337478614683678-------75837---586899854
No 69
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.71 E-value=0.00027 Score=47.89 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=63.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEE-----ECCCCCCCCCCCCCCCCCHHHHHHH------HHCCEEEEEE
Q ss_conf 999988899998999999997489-805998211-----0798998546875222379998665------3055244545
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVT-----TRVRRPNEVDGKDYYFLSLSRFNEL------KKANAFIEKA 84 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~T-----TR~~R~gE~~G~dY~Fvs~~~F~~~------i~~~~FlE~~ 84 (222)
||-++|-|||||+|+++.+.+.+. .-..+++.= .|..|. ..|.++.--....|+.+ .++|+=++-
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r~--~~~~t~~~P~And~dll~~~l~~Lk~Gk~i~~- 77 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRK--ETGITALDPRANNFDLMYEQLKALKEGQAIEK- 77 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH--HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf 989978887869999999999858487699965777889989998--71877689752349999999999985995343-
Q ss_pred ECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHH-----HHHHCCCCCHHHHHHHCCCHHHHHHHHH----HHCCCCCHH
Q ss_conf 6045733413211223221012203014523445-----5531267415789862132799999998----520112112
Q gi|255764507|r 85 EVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQ-----NLHKQMGSNVLSFFILPPTMQELCSRLS----LRAKKNQED 155 (222)
Q Consensus 85 ~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~-----~l~~~~~~~~~~IFI~pps~e~L~~RL~----~R~~~~~d~ 155 (222)
.++++--|+. +.-.. +.-..+++++ |.. .++..+ + +.|||.|+.--+|.+|+. .||..-..=
T Consensus 78 PvYdh~tg~~-~~~e~-i~p~diII~E----GLh~l~~~~lrdl~--D-LkIfVD~d~dlr~~rKI~RD~~ERGyS~E~V 148 (273)
T cd02026 78 PIYNHVTGLI-DPPEL-IKPTKIVVIE----GLHPLYDERVRELL--D-FSVYLDISDEVKFAWKIQRDMAERGHSLEDV 148 (273)
T ss_pred CCCCCCCCCC-CCCEE-ECCCCEEEEE----CEECCCCHHHHHHH--C-EEEEECCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 2221458965-77565-0687479992----20002668898660--7-4688568764799998776676648899999
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q gi|255764507|r 156 KEKVQLRLQNA 166 (222)
Q Consensus 156 ~e~i~~Rl~~a 166 (222)
.+.|.+|+..+
T Consensus 149 ~~~I~rR~pDy 159 (273)
T cd02026 149 LASIEARKPDF 159 (273)
T ss_pred HHHHHHHHHHH
T ss_conf 99998604788
No 70
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=97.71 E-value=1.4e-05 Score=56.23 Aligned_cols=24 Identities=38% Similarity=0.764 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++++.|++|||||||+||.++|+.
T Consensus 170 ~~k~tv~~G~SGVGKSSLIN~L~p 193 (351)
T PRK12289 170 RNKITVVAGPSGVGKSSLINRLIP 193 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 598699981798878898876374
No 71
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=97.69 E-value=2.9e-05 Score=54.09 Aligned_cols=61 Identities=26% Similarity=0.452 Sum_probs=35.4
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHH---HH---HCCC---EEEEEEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHCCEE
Q ss_conf 3479729999888999989999999---97---4898---05998211079899854687522237-9998665305524
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHL---LK---CDQN---FEMSISVTTRVRRPNEVDGKDYYFLS-LSRFNELKKANAF 80 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L---~~---~~~~---~~~~v~~TTR~~R~gE~~G~dY~Fvs-~~~F~~~i~~~~F 80 (222)
..++|-+++|+||||||||||.+.+ .+ -..+ +-|.| | .+|.|=-=.. ..+..++.+.=.+
T Consensus 24 ~i~~GE~~~~IG~SGAGKSTLLR~iNrL~~Gdk~~~Geilidf~i---~-------~~g~~i~~~~~~k~LR~~R~~igM 93 (253)
T TIGR02315 24 EINPGEFVAVIGPSGAGKSTLLRCINRLVEGDKPSSGEILIDFSI---L-------LEGTDITKLRRGKKLRKLRRKIGM 93 (253)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEE---E-------ECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 341651799973788726799987753026888876508988888---8-------727318767548899999764350
Q ss_pred E
Q ss_conf 4
Q gi|255764507|r 81 I 81 (222)
Q Consensus 81 l 81 (222)
+
T Consensus 94 I 94 (253)
T TIGR02315 94 I 94 (253)
T ss_pred E
T ss_conf 1
No 72
>PRK04040 adenylate kinase; Provisional
Probab=97.68 E-value=0.00075 Score=45.07 Aligned_cols=165 Identities=15% Similarity=0.190 Sum_probs=81.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCC-CCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEE
Q ss_conf 7299998889999899999999748-9805998211079899-8546875222379998665305524454560457334
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRP-NEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYG 92 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~-gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YG 92 (222)
+++++++|-+||||+|+.+.+.+.- ++|.. +.|-|.=-.. .+..++ -+++++.++--... -.+
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~-vn~G~~M~e~A~~~glv----~~RDemRkL~~~~q--------~~l-- 66 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI-VNFGDVMLEVAKEEGLV----EHRDEMRKLPLEEQ--------KEL-- 66 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEHHHHHHHHHHHCCCC----CCHHHHCCCCHHHH--------HHH--
T ss_conf 4189997589887899999999972358759-86779999999981773----47788747999999--------999--
Q ss_pred EECCHHHHHHHCCC--CEEECCC-----HHHH------HHHHHCCCCCHHHHHHHCCCHHHHHHHHHH-HCCCCCHHHHH
Q ss_conf 13211223221012--2030145-----2344------555312674157898621327999999985-20112112899
Q gi|255764507|r 93 TLRDPIEETISKGK--DMLFDID-----WQGA------QNLHKQMGSNVLSFFILPPTMQELCSRLSL-RAKKNQEDKEK 158 (222)
Q Consensus 93 t~~~~i~~~l~~g~--~~ildid-----~qG~------~~l~~~~~~~~~~IFI~pps~e~L~~RL~~-R~~~~~d~~e~ 158 (222)
.+.+.+.+.+.+. .+++|.+ +.|. ..|... ..+.+ |.|.+...+.+.+|+.. +..+..++++.
T Consensus 67 -Q~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L-~P~~i-vlieA~P~eIl~RR~~D~tR~RD~es~~~ 143 (189)
T PRK04040 67 -QREAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEEL-NPDVI-VLIEADPDEILMRRLRDPTRRRDVETEES 143 (189)
T ss_pred -HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHC-CCCEE-EEEECCHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf -9999999998357872899445200268867789989999866-99889-99975889999988425566898788999
Q ss_pred HHHHHHHHHH-HHHHHHH---CCEEEECCC--HHHHHHHHHHHHH
Q ss_conf 9999999999-9987641---897999498--8999999999999
Q gi|255764507|r 159 VQLRLQNAYS-EIKKWEF---YDYVLINDD--LENSLSILKSVIE 197 (222)
Q Consensus 159 i~~Rl~~a~~-E~~~~~~---fD~vIvNdd--le~a~~~L~~iI~ 197 (222)
|+.-+.-... -+.|+.. -=++|.|.+ +|+|.++|.++|.
T Consensus 144 I~~hq~~nR~~a~ayavltga~Vkiv~N~e~~~e~Aa~~iv~~l~ 188 (189)
T PRK04040 144 IEEHQEMNRAAAMAYAVLTGATVKIVENHEGLLEEAAEEIVEVLR 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999999999999999997398489997899988999999999861
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=97.68 E-value=0.0012 Score=43.76 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=57.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH-----------CCEEEEEE
Q ss_conf 2999988899998999999997489805998211079899854687522237999866530-----------55244545
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK-----------ANAFIEKA 84 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~-----------~~~FlE~~ 84 (222)
+.++|+||+|+||||++..|.+.. ++..+ |.|.-|- -+.+.++..+. ....+=--
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~-g~~vi-----------ElNASD~--R~~~~I~~~i~~~~~~~sl~~~~~KlIIlD 106 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY-GWEVI-----------ELNASDQ--RTKDVIERVAGEASTSGSLFGAKRKLILLD 106 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCCEE-----------EECCCCC--CCHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 469988939987999999999984-99859-----------9771011--478999999998760688778873499963
Q ss_pred ECCCCCEEE---ECCHHHHHHHCCCCEEE-CC-CHHH--HHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 604573341---32112232210122030-14-5234--4555312674157898621327999999985
Q gi|255764507|r 85 EVHGNFYGT---LRDPIEETISKGKDMLF-DI-DWQG--AQNLHKQMGSNVLSFFILPPTMQELCSRLSL 147 (222)
Q Consensus 85 ~~~g~~YGt---~~~~i~~~l~~g~~~il-di-d~qG--~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~ 147 (222)
|++|-...- ...++.+.+++.+.+++ .+ |+.. .+.|+. .+..|-..||+.+.+..+|..
T Consensus 107 EvD~l~~~~d~gg~~al~~~ik~s~~PiIli~Nd~~~~~~~~lrs----~c~~i~F~~~~~~~I~~~L~~ 172 (403)
T PRK04195 107 EVDGIHGNADRGGVRAILEIIKKAKNPIILTANDPYDPSLRPLRN----ACLMIEFKRLSKRSIVPVLKR 172 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH----HHHHCCCCCCCHHHHHHHHHH
T ss_conf 434457244479999999998548870899826845567177997----661221799499999999999
No 74
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=97.68 E-value=5.7e-05 Score=52.23 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
+-|-+++|+||||||||||.|.|...+
T Consensus 32 ~aGEcv~L~G~SGaGKSTlLk~lYaNY 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 367358853688876789999766304
No 75
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=97.67 E-value=6.6e-05 Score=51.82 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHC--CC---EEE-EEEEEECCC
Q ss_conf 34797299998889999899999999748--98---059-982110798
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCD--QN---FEM-SISVTTRVR 53 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~--~~---~~~-~v~~TTR~~ 53 (222)
+..+|-.|.|+||||+||+||.+ |+..+ |- +.. -.+|||-+|
T Consensus 20 ~V~~Ge~VAi~GpSGAGKSTLLn-LiAGF~~PasG~i~~nd~~~t~~aP 67 (213)
T TIGR01277 20 SVEDGERVAILGPSGAGKSTLLN-LIAGFLEPASGEIKVNDKDHTRLAP 67 (213)
T ss_pred CCCCCCEEEEECCCCCCHHHHHH-HHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 13017768887589862788987-7864047764058877801226888
No 76
>pfam00774 consensus
Probab=97.66 E-value=0.00023 Score=48.39 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=65.8
Q ss_pred HHHHHHCCCCEEECCCH-HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 22322101220301452-3445553126741578986213279999999852011211289999999999999-987641
Q gi|255764507|r 98 IEETISKGKDMLFDIDW-QGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSE-IKKWEF 175 (222)
Q Consensus 98 i~~~l~~g~~~ildid~-qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E-~~~~~~ 175 (222)
|-+.....+.||+|.|. +--.+|.+. ...|+.|||+-.|..+|.+-++.||+.- .....--+-++..- +.-...
T Consensus 85 Ifelar~lqLvvLDsdtInhP~ql~Kt-sLAPIivyiKiss~kVLqrLIKsrGKsq---~K~~nvQ~vaaeKl~Qc~~e~ 160 (223)
T pfam00774 85 IFELARTLQLVVLDADTINHPAQLSKT-SLAPIIVYVKISSPKVLQRLIKSRGKSQ---SKHLNVQMVAADKLAQCPPEL 160 (223)
T ss_pred HHHHHHCCCEEEECCCCCCCHHHHHCC-CCCCEEEEEEECCHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHCCCHHH
T ss_conf 999862363799516666897886016-7765699999676899999997347676---640216787677765089876
Q ss_pred CCEEEECCCHHHHHHHHHHHHHH
Q ss_conf 89799949889999999999999
Q gi|255764507|r 176 YDYVLINDDLENSLSILKSVIEV 198 (222)
Q Consensus 176 fD~vIvNddle~a~~~L~~iI~~ 198 (222)
||.|+.-+.|++|++.|.+.+++
T Consensus 161 FDvILdENqLedAcehLaeyLEa 183 (223)
T pfam00774 161 FDVILDENQLEDACEHLAEYLEA 183 (223)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 22000523078999999999999
No 77
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.65 E-value=2.2e-05 Score=54.91 Aligned_cols=97 Identities=23% Similarity=0.344 Sum_probs=57.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH---CCEEEEEEECC
Q ss_conf 47972999988899998999999997489-805998211079899854687522237999866530---55244545604
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK---ANAFIEKAEVH 87 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~---~~~FlE~~~~~ 87 (222)
.++|..+.|+||||+||+||.+.|+..++ .-+.+. +||+|..-++.+...+.+. ++-++-.+.+.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~-----------idg~dI~~i~~~~lr~~i~~V~Qd~~LF~~TI~ 420 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL-----------IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420 (567)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE-----------ECCEEHHHCCHHHHHHHEEEECCCCHHHHHHHH
T ss_conf 548987888558888578999999861588883698-----------999977753856788782354664277776699
Q ss_pred CC-CEEEE---CCHHHHHHHCC--CCEEECCCHHHHHHH
Q ss_conf 57-33413---21122322101--220301452344555
Q gi|255764507|r 88 GN-FYGTL---RDPIEETISKG--KDMLFDIDWQGAQNL 120 (222)
Q Consensus 88 g~-~YGt~---~~~i~~~l~~g--~~~ildid~qG~~~l 120 (222)
.| .||-+ .+.|..+++.- +..+..+ |+|..+.
T Consensus 421 ~NI~~g~~~at~eei~~a~k~a~~~d~I~~l-p~g~dt~ 458 (567)
T COG1132 421 ENIALGRPDATDEEIEEALKLANAHEFIANL-PDGYDTI 458 (567)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCHHHHHHC-CCCCCCE
T ss_conf 9974578899999999999994863789847-6667836
No 78
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00061 Score=45.64 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=77.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE----CCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 729999888999989999999974898059982110----7989985468752223799986653055244545604573
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT----RVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT----R~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
.++++++|-+|+||+|+.+-+.+.--.+ ..+-|-+ ++.+.| .+ .+++++.++.....-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~-~ivNyG~~Mle~A~k~g---lv----e~rD~~Rklp~e~Q~---------- 65 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKH-KIVNYGDLMLEIAKKKG---LV----EHRDEMRKLPLENQR---------- 65 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-EEEEHHHHHHHHHHHHC---CC----CCHHHHHCCCHHHHH----------
T ss_conf 5599997579887266999999877522-00007699999999838---72----028988529888999----------
Q ss_pred EEEECCHHHHHHHCCCCEEECCC-----HHHHHH-----HHHCCCCCHHHHHHHCCCHHHHHHHHHH-HCCCCCHHHHHH
Q ss_conf 34132112232210122030145-----234455-----5312674157898621327999999985-201121128999
Q gi|255764507|r 91 YGTLRDPIEETISKGKDMLFDID-----WQGAQN-----LHKQMGSNVLSFFILPPTMQELCSRLSL-RAKKNQEDKEKV 159 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~~~ildid-----~qG~~~-----l~~~~~~~~~~IFI~pps~e~L~~RL~~-R~~~~~d~~e~i 159 (222)
-.-+.+.+.+.+.+..+|+|.+ |.|..- +-+....+.++ .|-+.-.+.|.+|+.. |..+..++.|+|
T Consensus 66 -~lq~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~iv-llEaDp~~Il~RR~~D~~r~Rd~es~e~i 143 (189)
T COG2019 66 -ELQAEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIV-LLEADPEEILERRLRDSRRDRDVESVEEI 143 (189)
T ss_pred -HHHHHHHHHHHHHHCCEEEECCCEECCCCCCCCCCCHHHHHHCCCCEEE-EEECCHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf -9999999999974206587324111478766778839999752988799-99379899999872261204662108999
Q ss_pred HHHHHHHHH-HHHHHHHC---CEEEECC--CHHHHHHHHHHHHH
Q ss_conf 999999999-99876418---9799949--88999999999999
Q gi|255764507|r 160 QLRLQNAYS-EIKKWEFY---DYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 160 ~~Rl~~a~~-E~~~~~~f---D~vIvNd--dle~a~~~L~~iI~ 197 (222)
..-.+.... -+.++... =.||.|. ++++|..++..+|.
T Consensus 144 ~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 144 REHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999997088489974788887888999999985
No 79
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=97.63 E-value=0.00018 Score=48.97 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=100.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 9729999888999989999999974898059982110798998--54687522237999866530552445456045733
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
.+.=|.|+|-+.|||+||.++|+...--+...++-|||-+=.. +.+|..|.||+-.-+....+-..-+| +|
T Consensus 210 ~~~rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~iE-------~~ 282 (474)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHE-------FY 282 (474)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHH-------HH
T ss_conf 76279998089987889999985897567458998515440589999998999998987663553343145-------89
Q ss_pred EEECCHHHHHHHCCCCEEECCCHHHHHHHHHC-------C--CCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 41321122322101220301452344555312-------6--74157898621327999999985201121128999999
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDWQGAQNLHKQ-------M--GSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLR 162 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~qG~~~l~~~-------~--~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~R 162 (222)
.+.+ ++ .+++...+|+|.+|..- .+..+ . .-+++.|-+ ++=.|- .. +..+.+...
T Consensus 283 s~~r-tl-~aI~~advvilviDa~e--git~QD~~Ia~~v~~~gk~~Iivv---NKwDLv----~~-----~~~~~~~~~ 346 (474)
T PRK03003 283 ASLR-TH-AAIDAAEVAVVLIDASE--PLTEQDQRVLSMVIEAGRALVLAF---NKWDLV----DE-----DRRYYLERE 346 (474)
T ss_pred HHHH-HH-HHHHHCCEEEEEEECCC--CCCHHHHHHHHHHHHHCCCEEEEE---ECHHCC----CH-----HHHHHHHHH
T ss_conf 9999-99-99873355799985465--874999999999998099579999---714416----86-----789999999
Q ss_pred HHHHHHHHHHHHHCCEEE----ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998764189799----94988999999999999988744345766999999986500
Q gi|255764507|r 163 LQNAYSEIKKWEFYDYVL----INDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEE 221 (222)
Q Consensus 163 l~~a~~E~~~~~~fD~vI----vNddle~a~~~L~~iI~~er~~~~~~~~~~~~~~~~ll~~~ 221 (222)
+. ..+.+..+...+- .+..++.-+..+..+. +++.+.--++.++.|+++.+..+
T Consensus 347 i~---~~l~~~~~~piv~ISA~~g~~i~kL~~~i~~v~--~~~~krI~Ts~LN~~L~~a~~~~ 404 (474)
T PRK03003 347 ID---RELAQVRWAPRVNISAKTGRAVQKLVPALETAL--ESWDTRIPTGRLNAWLKELVAAH 404 (474)
T ss_pred HH---HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 98---645544898569998104879899999999999--99647398799999999999838
No 80
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=97.62 E-value=5.9e-05 Score=52.12 Aligned_cols=153 Identities=15% Similarity=0.223 Sum_probs=85.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHC----CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEE-
Q ss_conf 9998889999899999999748----98059982110798998546875222379998665305524454560457334-
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCD----QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYG- 92 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~----~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YG- 92 (222)
|||+|+||+||||++..|.+.. |++.| +||=|.| .++-.++| .+|.=|- .+..||
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~y-------------ieGDdLH--P~~Ni~KM-s~GiPL~----DdDR~pW 60 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKY-------------IEGDDLH--PAANIEKM-SRGIPLN----DDDRWPW 60 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCC-------------CCCCCCC--CHHHHHHH-CCCCCCC----CCCCHHH
T ss_conf 9676027862889999999985431578875-------------6886667--87779873-1788887----0120437
Q ss_pred --EECCHHHHHHHCCCC--EEECCCHHHHH-----HHHH---CCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf --132112232210122--03014523445-----5531---26741578986213279999999852011211289999
Q gi|255764507|r 93 --TLRDPIEETISKGKD--MLFDIDWQGAQ-----NLHK---QMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQ 160 (222)
Q Consensus 93 --t~~~~i~~~l~~g~~--~ildid~qG~~-----~l~~---~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~ 160 (222)
.-.++......+|+. +|+-|. +.+ -||. .....+-+||+.+ +.++..+|+..|.=--+. ...++
T Consensus 61 L~~l~~~~~~~~~~~~~~~~~~~CS--ALKr~YRD~LR~s~~~~~~~~~FiyL~~-~~~~~~~R~~~RkGHFMk-a~m~~ 136 (175)
T TIGR01313 61 LKNLADALAQAAAKNKVHLVIITCS--ALKRKYRDILRSSLEEAEPELHFIYLSG-SKEVILKRMKSRKGHFMK-ADMLE 136 (175)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEE--CCHHHHHHHHHHHHCCCCCCEEEEEECC-CHHHHHHHHHHCCCCCCC-CHHHH
T ss_conf 9999999999984577454478840--1113555665422026898437886368-989999996107899862-04789
Q ss_pred HHHHHHHHHHHHH-HHCCEEEEC--CCHHHHHHHHHHHH
Q ss_conf 9999999999876-418979994--98899999999999
Q gi|255764507|r 161 LRLQNAYSEIKKW-EFYDYVLIN--DDLENSLSILKSVI 196 (222)
Q Consensus 161 ~Rl~~a~~E~~~~-~~fD~vIvN--ddle~a~~~L~~iI 196 (222)
.=++ .-|.... .+=|.+.|. .++|...++...++
T Consensus 137 SQf~--~LE~P~~nDE~d~~~vd~~~~~e~~~~~~~~~v 173 (175)
T TIGR01313 137 SQFE--ALEEPTANDETDVVTVDIDQPLEAVEEDCLAVV 173 (175)
T ss_pred HHHH--HHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999--727888888854378606886578999999998
No 81
>PRK07667 uridine kinase; Provisional
Probab=97.62 E-value=0.00081 Score=44.85 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEE-----EECCCCC--CCCCCCCCCCCC-------HHHHHHHHH
Q ss_conf 972-999988899998999999997489--80599821-----1079899--854687522237-------999866530
Q gi|255764507|r 14 RGM-MLIISSPSGVGKSTIARHLLKCDQ--NFEMSISV-----TTRVRRP--NEVDGKDYYFLS-------LSRFNELKK 76 (222)
Q Consensus 14 r~~-iivl~GpsG~GK~tl~~~L~~~~~--~~~~~v~~-----TTR~~R~--gE~~G~dY~Fvs-------~~~F~~~i~ 76 (222)
.++ +|-|.|+|||||||+++.|.+... +....+-| ..+..|. |-.+...|++.+ ++-|+.+ +
T Consensus 12 ~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~~~~r~~~~~~~~~~~~~~~~D~~~L~~~ll~~L-k 90 (190)
T PRK07667 12 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKL-Q 90 (190)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHH-C
T ss_conf 986999977989788999999999998665983799966624265888730598540012543125999999999984-3
Q ss_pred CCEEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHH----HHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 5524454560457334132112232210122030145234455----531267415789862132799999998520112
Q gi|255764507|r 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQN----LHKQMGSNVLSFFILPPTMQELCSRLSLRAKKN 152 (222)
Q Consensus 77 ~~~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~----l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~ 152 (222)
+|.=+++-. ++..-.+ +..-.-.+....++|++ |+-- ++..+ + +.|||..|.-..+.+-+..++
T Consensus 91 ~g~~i~~p~-Yd~~t~~-~~~~~~~v~p~~VIIvE----GI~l~~~elrd~~--D-~kIfVD~~~d~r~~R~~~~~~--- 158 (190)
T PRK07667 91 NETKLTLPF-YHDETDT-CEMKKVQIPIVGVIVIE----GVFLQRKEWRDFF--H-YMVYLDCPRETRFLRESEETQ--- 158 (190)
T ss_pred CCCCEEEEE-ECCCCCC-CCCCEEECCCCCEEEEE----CHHHCCHHHHHHC--C-EEEEEECCHHHHHHHHHHHHH---
T ss_conf 899767524-6023366-77642766999889995----0443888789756--8-799997899999887302023---
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 11289999999999
Q gi|255764507|r 153 QEDKEKVQLRLQNA 166 (222)
Q Consensus 153 ~d~~e~i~~Rl~~a 166 (222)
.+.+....|--.|
T Consensus 159 -~~l~~~~~ry~~a 171 (190)
T PRK07667 159 -KNLSKFENRYWKA 171 (190)
T ss_pred -HHHHHHHHHHHHH
T ss_conf -4689999999999
No 82
>KOG3354 consensus
Probab=97.62 E-value=6.4e-05 Score=51.91 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=64.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHC---CEEEEEEECCCCCEE
Q ss_conf 29999888999989999999974898059982110798998546875222379998665305---524454560457334
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKA---NAFIEKAEVHGNFYG 92 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~---~~FlE~~~~~g~~YG 92 (222)
-+|+++|+||+||+|+.+.|.+.. ++.| .||-||| +.+.-++|.+. +.==-|.+.+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l-~~~F-------------~dgDd~H--p~~NveKM~~GipLnD~DR~pWL~~---- 72 (191)
T KOG3354 13 YVIVVMGVSGSGKSTIGKALSEEL-GLKF-------------IDGDDLH--PPANVEKMTQGIPLNDDDRWPWLKK---- 72 (191)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHH-CCCC-------------CCCCCCC--CHHHHHHHHCCCCCCCCCCCHHHHH----
T ss_conf 059998358877445999999985-8862-------------4555579--8788998836998885321179999----
Q ss_pred EECCHHHHHHHCCCCEEECCCHH--HHHHH-HH---------CCCCCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 13211223221012203014523--44555-31---------2674157898621327999999985201
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDIDWQ--GAQNL-HK---------QMGSNVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid~q--G~~~l-~~---------~~~~~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
+ -.+....+..|+-+|+-+..- -.+.| +. ....++.+||+.. |.|++..||..|.-
T Consensus 73 i-~~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354 73 I-AVELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred H-HHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC-CHHHHHHHHHHCCC
T ss_conf 9-99999876327818997288889999999732114786678640588863304-29999999840666
No 83
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.62 E-value=8.7e-05 Score=51.05 Aligned_cols=51 Identities=27% Similarity=0.375 Sum_probs=39.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748-98059982110798998546875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~ 74 (222)
+.|.+|=|+|||||||+||.|-+-.-+ |+-+.+. +||+|=--++..-...-
T Consensus 489 ~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVL-----------VDG~DLA~~DP~wLRRQ 540 (703)
T TIGR01846 489 KPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVL-----------VDGVDLAIADPAWLRRQ 540 (703)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE-----------ECCCCCCCCCCCHHHHC
T ss_conf 78657998727898678999998861488887477-----------70300010185201022
No 84
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.61 E-value=0.00016 Score=49.33 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=74.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCCC--CHHHHHHHHHCCEEEEEEECCCCCEE
Q ss_conf 9999888999989999999974898059982110798998546875--2223--79998665305524454560457334
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYFL--SLSRFNELKKANAFIEKAEVHGNFYG 92 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~Fv--s~~~F~~~i~~~~FlE~~~~~g~~YG 92 (222)
=|+|+|+.||||+|+-+.|.+.. ++.++=+ -+-. -+..|.. =.|- .++.|...... .+.+-. .
T Consensus 6 nI~LiG~mGsGKstvgk~LA~~l-~~~fiD~--D~~I--e~~~g~si~~If~~~Ge~~FR~~E~~-~l~~l~---~---- 72 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDS--DQEI--EKRTGADIGWVFDVEGEEGFRDREEK-VINELT---E---- 72 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCCEEEC--HHHH--HHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHH---C----
T ss_conf 28988999998899999999996-9996878--0999--99979899999999749999999999-999885---4----
Q ss_pred EECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC---CCHH-HHHHHHHHHHHHH
Q ss_conf 13211223221012203014523445553126741578986213279999999852011---2112-8999999999999
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK---NQED-KEKVQLRLQNAYS 168 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~---~~d~-~e~i~~Rl~~a~~ 168 (222)
.. ..+++.|--+++. .+....|+. ...+||+.. |.+.+.+|+.....+ ..++ .+.+..-++ ..
T Consensus 73 --~~--~~VIstGGG~v~~--~~~~~~L~~----~g~vv~L~~-~~~~~~~R~~~~~~RPll~~~~~~~~~~~l~~--~R 139 (172)
T PRK05057 73 --KQ--GIVLATGGGSVKS--RETRNRLSA----RGVVVYLET-TIEKQLARTQRDKKRPLLQVDDPREVLEALAN--ER 139 (172)
T ss_pred --CC--CEEEECCCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--HH
T ss_conf --79--9799789853588--999999996----695899959-98999998058999997989987999999999--99
Q ss_pred HHHHHHHCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 998764189799949--88999999999999
Q gi|255764507|r 169 EIKKWEFYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 169 E~~~~~~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
+--|....|++|..+ +.++..+++.++++
T Consensus 140 ~~~Y~~~Ad~~I~td~~~~~~i~~~Ii~~L~ 170 (172)
T PRK05057 140 NPLYEEIADVTVRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred HHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999986999998999999999999999996
No 85
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.59 E-value=6.5e-05 Score=51.86 Aligned_cols=115 Identities=24% Similarity=0.315 Sum_probs=59.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC-EEEE
Q ss_conf 299998889999899999999748980599821107989985468752223799986653055244545604573-3413
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF-YGTL 94 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~-YGt~ 94 (222)
++|+||||+||||||+++.|.+.. ++.++=+=-=|.. .+.-|.| +.+.+ |++-+..- =-+-
T Consensus 1 M~I~ISGpPGSGktTvA~~lA~~L-sl~~iSaG~iRel--A~~~Gld---l~E~~------------~aee~~eIDk~iD 62 (173)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL-SLKLISAGDIREL--AEKMGLD---LAESK------------YAEENPEIDKKID 62 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC-CCCEECCCHHHHH--HHHCCCC---HHHHH------------HHCCCCCCCHHHH
T ss_conf 978873589686478999999863-9831202007889--8642988---77734------------4305863116753
Q ss_pred CCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 211223221012203014523445553126741578986213279999999852011
Q gi|255764507|r 95 RDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK 151 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~ 151 (222)
+. +.+.+..-+++|++=..-|=...+.--..+ +.||+.+| +++--+|.-.|-..
T Consensus 63 ~~-~~E~A~~~~nvvlEsrlagW~~~~nG~yaD-~~iyL~A~-levRA~RIA~Re~k 116 (173)
T TIGR02173 63 RR-IREIAEKEKNVVLESRLAGWILKKNGEYAD-VKIYLKAP-LEVRARRIAKRENK 116 (173)
T ss_pred HH-HHHHHCCCCCEEEEEHHHHHHCCCCCCCCC-EEEEECCC-HHHHHHHHHHCCCC
T ss_conf 78-855430489668852054331157889675-67886088-33324332113688
No 86
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=97.58 E-value=0.00041 Score=46.77 Aligned_cols=165 Identities=18% Similarity=0.324 Sum_probs=96.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC-----CCC-CCCCCCCCHHHHHHHHHCCEEEEEEEC
Q ss_conf 79729999888999989999999974898059982110798998-----546-875222379998665305524454560
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN-----EVD-GKDYYFLSLSRFNELKKANAFIEKAEV 86 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g-----E~~-G~dY~Fvs~~~F~~~i~~~~FlE~~~~ 86 (222)
+-|+++||.|| ||||.|=|.++.+++ +| . |-+ .| |+. |=+ -+ .+..+-.++|.++--..|
T Consensus 2 ~~kIiFivGGP-GSGKGTQC~KiV~KY-Gf--T--HLS----sGdLLR~Ev~SgS~---rg-~~L~aiMe~G~LVp~~~V 67 (191)
T TIGR01360 2 KVKIIFIVGGP-GSGKGTQCEKIVEKY-GF--T--HLS----SGDLLREEVASGSE---RG-KQLQAIMESGELVPLDVV 67 (191)
T ss_pred CCCEEEEECCC-CCCCCHHHHHHHHHC-CC--C--CCC----HHHHHHHHHCCCCC---HH-HHHHHHHHCCCCCCCHHH
T ss_conf 97568886588-888401368988641-88--6--454----06788987415781---14-789999861885550668
Q ss_pred CCCCEEEECCHHHHHHHC-CCCEEECCCH----HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCC-----HHH
Q ss_conf 457334132112232210-1220301452----344555312674157898621327999999985201121-----128
Q gi|255764507|r 87 HGNFYGTLRDPIEETISK-GKDMLFDIDW----QGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQ-----EDK 156 (222)
Q Consensus 87 ~g~~YGt~~~~i~~~l~~-g~~~ildid~----qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~-----d~~ 156 (222)
-+-+ ++++-..+.. .|==++|==| ||-.-=++..+.+ +.+|+-. |.|.|-+||..|+..+. |++
T Consensus 68 L~Ll----~dAm~~~~~~GskGFLIDGYPRev~QG~eFe~~I~~a~-L~Ly~d~-s~dTmv~RLL~Ra~~S~vkR~DDn~ 141 (191)
T TIGR01360 68 LDLL----KDAMLAALGKGSKGFLIDGYPREVKQGEEFEKRIAPAK-LVLYFDC-SEDTMVKRLLKRAETSGVKRVDDNE 141 (191)
T ss_pred HHHH----HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-EEEEEEC-CHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 9999----99999862489863112687332011245675159963-4643000-4447999999987624799889887
Q ss_pred HHHHHHHHHHHHH----HHHHH-HCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 9999999999999----98764-18979994--988999999999999
Q gi|255764507|r 157 EKVQLRLQNAYSE----IKKWE-FYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 157 e~i~~Rl~~a~~E----~~~~~-~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
+.|.+||.++..- +.|+. .=-.+=+| .+.|+-|.++-+.|.
T Consensus 142 ~TI~kRL~ty~~~t~pvi~yYe~kg~~~~iNAEG~vddvF~~vv~~lD 189 (191)
T TIGR01360 142 KTIKKRLETYYKATEPVIAYYESKGKLLKINAEGTVDDVFLQVVAALD 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899999999885028899861788715774277877589999999742
No 87
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.57 E-value=5.9e-05 Score=52.12 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCCC
Q ss_conf 7972999988899998999999997-4898
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK-CDQN 41 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~-~~~~ 41 (222)
.+|-++.|+||||||||||.|.|+. ..|.
T Consensus 26 ~kG~F~FLtG~SGAGKttLLKLl~~~~~P~ 55 (215)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPS 55 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 277407887277861789999998526987
No 88
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.57 E-value=7.5e-05 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998889999899999999748
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~ 39 (222)
|+|.||+||||+|.++.|.+.+
T Consensus 3 iillGpPGsGKgT~a~~l~~~~ 24 (225)
T PTZ00088 3 IVLFGAPGVGKGTFAEILSKKE 24 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998799999999987
No 89
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=97.54 E-value=3.8e-05 Score=53.33 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
+++..|++|||||||+||.+.|+.
T Consensus 34 ~~k~sv~~G~SGVGKSTLiN~L~~ 57 (161)
T pfam03193 34 KGKTSVLAGQSGVGKSTLLNALLP 57 (161)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 798599988999889999988563
No 90
>PRK13948 shikimate kinase; Provisional
Probab=97.53 E-value=0.00027 Score=47.92 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=69.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCC--CCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 729999888999989999999974898059982110798998546875--222--3799986653055244545604573
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYF--LSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~F--vs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
...|+|+|+.||||+|+-+.|.+.. ++.|+=+-.-=..+. |.. -.| -.++.|.++.. +.+.. ..
T Consensus 10 ~~~IvLIG~mGsGKStiGk~LA~~l-~~~fiD~D~~Ie~~~----g~sI~eIF~~~GE~~FR~~E~--~~l~~--l~--- 77 (182)
T PRK13948 10 ATFVALAGFMGTGKSRIGWELSRAL-ALHFVDTDKLITRVV----GKSIPEVFAQEGEEYFRACEK--EVVRR--VT--- 77 (182)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEEECHHHHHHHH----CCCHHHHHHHHCHHHHHHHHH--HHHHH--HH---
T ss_conf 9818988999998899999999996-959888849999988----939999999848999999999--99999--97---
Q ss_pred EEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHH
Q ss_conf 3413211223221012203014523445553126741578986213279999999852011---2112899999999999
Q gi|255764507|r 91 YGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK---NQEDKEKVQLRLQNAY 167 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~---~~d~~e~i~~Rl~~a~ 167 (222)
... ..+++.|--+++. .+....|++. ..+||+..+ .+.+.+|+....+- +.+..+.+..-+. .
T Consensus 78 ---~~~--~~VIStGGG~v~~--~~n~~~l~~~----g~vv~L~~~-~~~i~~R~~~~~RPll~~~~~~~~l~~l~~--e 143 (182)
T PRK13948 78 ---RLD--YAVISLGGGTFIH--EENRRALLGR----GPVVVLWAS-PETVYQRTKHSDRPLLQVEDPLERIRTLME--E 143 (182)
T ss_pred ---CCC--CEEEECCCCEECC--HHHHHHHHHC----CEEEEEECC-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--H
T ss_conf ---479--9699758850058--9999999968----989999699-999998817899998889987999999999--9
Q ss_pred HHHHHHHHCCEEEECCC--HHHHHHHHHHHHH
Q ss_conf 99987641897999498--8999999999999
Q gi|255764507|r 168 SEIKKWEFYDYVLINDD--LENSLSILKSVIE 197 (222)
Q Consensus 168 ~E~~~~~~fD~vIvNdd--le~a~~~L~~iI~ 197 (222)
.+--|.. .|++|.+|+ .+++++++...+.
T Consensus 144 R~~~Y~~-A~~~I~td~~~~~eiv~~Ii~~L~ 174 (182)
T PRK13948 144 REPVYRQ-GTIHVHSDGRPVEEIVEEVVERLW 174 (182)
T ss_pred HHHHHHH-CCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999996-788988998999999999999999
No 91
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.51 E-value=0.00049 Score=46.26 Aligned_cols=133 Identities=22% Similarity=0.251 Sum_probs=74.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCC--CCCC-CCHHHHHHHH-HCCEEEEEEECCCC
Q ss_conf 729999888999989999999974898-05998211079899854687--5222-3799986653-05524454560457
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVRRPNEVDGK--DYYF-LSLSRFNELK-KANAFIEKAEVHGN 89 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~v~~TTR~~R~gE~~G~--dY~F-vs~~~F~~~i-~~~~FlE~~~~~g~ 89 (222)
|+.|||=|+-||||||+++.|.+..+. -++.+ +-||+|..+-+-.. .+-- +..+....+. +.-.||=.+-=+.|
T Consensus 2 ~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~-~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~~H 80 (211)
T TIGR00041 2 GMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKV-LFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADRHDH 80 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 745888511587589999999999775138347-8871899987899999999987414666335999999999858999
Q ss_pred CEEEECCHHHHHHHCCCCEEEC---------------CCHHHHHHHHHCCCC---CHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 3341321122322101220301---------------452344555312674---157898621327999999985201
Q gi|255764507|r 90 FYGTLRDPIEETISKGKDMLFD---------------IDWQGAQNLHKQMGS---NVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 90 ~YGt~~~~i~~~l~~g~~~ild---------------id~qG~~~l~~~~~~---~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
+|=+ .+-|+.++.+|+.||.| +|+.=+..|...... .-.+||+.. +.++--+|+..||.
T Consensus 81 L~~~-~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~-d~e~al~R~~~~g~ 157 (211)
T TIGR00041 81 LEHV-EEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDI-DPEVALERLRKRGE 157 (211)
T ss_pred HHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE-CHHHHHHHHHCCCC
T ss_conf 9978-98778898669679984112435777542256888899999775211358666898860-73779887520472
No 92
>PRK13949 shikimate kinase; Provisional
Probab=97.51 E-value=0.00058 Score=45.78 Aligned_cols=152 Identities=15% Similarity=0.128 Sum_probs=67.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCCC--CHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 999888999989999999974898059982110798998546875--2223--799986653055244545604573341
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYFL--SLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~Fv--s~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
|+|+|+.||||+|+-+.|.+.. ++.|+=+-.-=..+. |.. =.|- .++.|...... .+.. .-.
T Consensus 4 I~LiG~mGsGKstiGk~La~~l-~~~fiD~D~~Ie~~~----g~sI~eif~~~Ge~~FR~~E~~--~l~~------l~~- 69 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALAREL-GLSFIDLDFFIENRF----HKTVGDIFAERGEAVFRELERN--MLHE------VAE- 69 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHH----CCCHHHHHHHHCHHHHHHHHHH--HHHH------HHC-
T ss_conf 8997999998899999999995-999797849999985----9999999998698999999999--9999------845-
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHH--
Q ss_conf 32112232210122030145234455531267415789862132799999998520----112112899999999999--
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRA----KKNQEDKEKVQLRLQNAY-- 167 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~----~~~~d~~e~i~~Rl~~a~-- 167 (222)
.+ ..+++.|--+++. .+....+++ ...+||+.+ |.+++.+|+.... .-...+.++....+....
T Consensus 70 -~~--~~VistGGG~v~~--~~n~~~l~~----~g~vV~L~~-~~~~l~~Rl~~~~~~RPll~~~~~~e~~~~i~~~~~~ 139 (169)
T PRK13949 70 -FE--DVVISTGGGAPCF--FDNMELMNA----SGTTVYLKV-SPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEK 139 (169)
T ss_pred -CC--CEEEECCCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -89--8399748631157--999999996----895799989-9999999975689999987898989999999999999
Q ss_pred HHHHHHHHCCEEEECCC--HHHHHHHHHH
Q ss_conf 99987641897999498--8999999999
Q gi|255764507|r 168 SEIKKWEFYDYVLINDD--LENSLSILKS 194 (222)
Q Consensus 168 ~E~~~~~~fD~vIvNdd--le~a~~~L~~ 194 (222)
.+--| ...|++|..|+ .+++++++.+
T Consensus 140 R~~~Y-~~A~~~I~td~~s~~~i~~~Ii~ 167 (169)
T PRK13949 140 RAPFY-RQAKIIFNADKLEDESQIEQLVQ 167 (169)
T ss_pred HHHHH-HHCCEEEECCCCCHHHHHHHHHH
T ss_conf 99999-97998998999999999999997
No 93
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.51 E-value=4.4e-05 Score=52.96 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9729999888999989999999974
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
+++..+++|+|||||+||.+.|+..
T Consensus 160 ~~k~~v~~G~SGvGKSSLiN~L~~~ 184 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 7988999889988889999874621
No 94
>PRK06547 hypothetical protein; Provisional
Probab=97.50 E-value=0.0012 Score=43.80 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=71.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH----HCCEEEEEEEC--C
Q ss_conf 97299998889999899999999748980599821107989985468752223799986653----05524454560--4
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK----KANAFIEKAEV--H 87 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i----~~~~FlE~~~~--~ 87 (222)
+-.+|.|-||||||||||+++|.+..+... +-|+---- + |-+--...-+.+...+ ..|.=..|..+ .
T Consensus 14 ~~~iVaIDG~sGaGKTTLA~~La~~~~~~~--vvHmDD~Y-~----GW~gl~~~~~~l~~~VL~Pl~~G~~~~yr~~DW~ 86 (184)
T PRK06547 14 DMITVLIDGRSGSGKTTLAGELAACWEGSQ--LVHLDDLY-P----GWDGLAAASEHVREALLDPRALGRPGRWRRWDWA 86 (184)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCC--EEEECCCC-C----CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 769999868998888999999997457982--89705777-7----7654046899999998646418997366062157
Q ss_pred CCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCC-CCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 57334132112232210122030145234455531267-41578986213279999999852011211289999999999
Q gi|255764507|r 88 GNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMG-SNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNA 166 (222)
Q Consensus 88 g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~-~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a 166 (222)
.+.+| +. ..+..+..+|++ |+-..+.... .--..|||..|. ++-.+|...|.- +...... .-+
T Consensus 87 ~~~~~---~~--~~v~~~~~lIvE----Gvga~~~~~r~~~d~~IWve~~~-~~r~~R~l~RDG---e~~~~w~---~W~ 150 (184)
T PRK06547 87 NNCPG---GW--VTVEPGRRLIIE----GVGALTAANRALADLTVWLEGPE-ALRKQRALTRDP---DYAPHWD---MWA 150 (184)
T ss_pred CCCCC---CC--EECCCCCCEEEE----CCCCCCHHHCCCCCEEEEEECCH-HHHHHHHHHCCC---CHHHHHH---HHH
T ss_conf 89978---75--673788818996----62315631314123777774898-999999986095---0269999---999
Q ss_pred HHHHHHH------HHCCEEEECC
Q ss_conf 9999876------4189799949
Q gi|255764507|r 167 YSEIKKW------EFYDYVLIND 183 (222)
Q Consensus 167 ~~E~~~~------~~fD~vIvNd 183 (222)
..|..|. ...|+||-|-
T Consensus 151 ~~E~~~fa~~~~~~~AD~iv~~t 173 (184)
T PRK06547 151 AQEERHIARYDPRDVADLLGSDT 173 (184)
T ss_pred HHHHHHHHCCCCHHHCEEEEECC
T ss_conf 99999985599166081898379
No 95
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.49 E-value=0.00014 Score=49.77 Aligned_cols=90 Identities=26% Similarity=0.322 Sum_probs=47.1
Q ss_pred ECCCCCCC-----------CEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCC-----CCCCCHH
Q ss_conf 00483479-----------7299998889999899999999748-98059982110798998546875-----2223799
Q gi|255764507|r 7 FPLTVNHR-----------GMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKD-----YYFLSLS 69 (222)
Q Consensus 7 ~~~~~~~r-----------~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~d-----Y~Fvs~~ 69 (222)
||..+++. |.+++|+||||+||+|++--|...+ |.=+-+. .||++ +||.-+.
T Consensus 540 YP~RP~~pvLk~LtFt~~PG~vvALVGPsGsGKStvaaLL~n~Y~Pt~G~vL-----------lDg~Pl~~y~H~YLH~~ 608 (770)
T TIGR00958 540 YPNRPDVPVLKGLTFTLEPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL-----------LDGVPLSQYDHHYLHRQ 608 (770)
T ss_pred CCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE-----------ECCCCHHHHCCEECCCE
T ss_conf 7898897611277436538625998658998399999999855789865687-----------76846133265010002
Q ss_pred HHHHHHHCCEEEEEEECCCC-CEEEECCH-HHHHHHCCCCEE
Q ss_conf 98665305524454560457-33413211-223221012203
Q gi|255764507|r 70 RFNELKKANAFIEKAEVHGN-FYGTLRDP-IEETISKGKDML 109 (222)
Q Consensus 70 ~F~~~i~~~~FlE~~~~~g~-~YGt~~~~-i~~~l~~g~~~i 109 (222)
- ..+.+-=.|--+.+.+| -||....+ -+++.+.-+.|-
T Consensus 609 V--~~VgQEPvLf~gSvr~NIaYGL~~~~T~~~~~aaA~~a~ 648 (770)
T TIGR00958 609 V--ALVGQEPVLFSGSVRENIAYGLTKTPTDEEVTAAAKAAN 648 (770)
T ss_pred E--EEEECCCEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 5--433205430246316656516899982789999998613
No 96
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.49 E-value=0.00028 Score=47.76 Aligned_cols=154 Identities=19% Similarity=0.303 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 999988899998999999997489--805998211079899854687522237999866530552445456045733413
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQ--NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~--~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
||+|+|-+||||+|+++.|.+... +...++. .+-..| +.+.+.++..++.+ -|..
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~-~~d~~~-------~~~~~~~~~~Ek~~---------------r~~~ 57 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIIL-GTDLIR-------ESFPVWKEKYEEFI---------------RDST 57 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE-CCCCCH-------HHHHHCCHHHHHHH---------------HHHH
T ss_conf 978967899989999999999999829965996-552002-------12000336779998---------------9999
Q ss_pred CCHHHHHHHCCCCEEECCC--HHHHH----HHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2112232210122030145--23445----55312674157898621327999999985201121128999999999999
Q gi|255764507|r 95 RDPIEETISKGKDMLFDID--WQGAQ----NLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYS 168 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid--~qG~~----~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~ 168 (222)
...|...++...++|+|=. ..|.+ .+-+.+......||+.+| .+...+|-..|+.. =+++.|..-..+.+.
T Consensus 58 ~~~v~~~l~~~~~vI~D~~nYiKg~RYEL~clAk~~~t~~c~I~~~~p-~e~c~~~N~~R~~~--~~~e~i~~m~~r~E~ 134 (249)
T TIGR03574 58 LYLIKTALKNKYSVIVDDTNYYNSKRRDLINIAKEYNKNYIIIYLKAP-LDTLLRRNIERGEK--IPNEVIKDMYEKFDE 134 (249)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHCCCC--CCHHHHHHHHHHHCC
T ss_conf 999999843376699727327889999999999984998699997399-99999987606899--999999999997079
Q ss_pred H-HH-HHHHCCEEEECC---CHHHHHHHHHHHH
Q ss_conf 9-98-764189799949---8899999999999
Q gi|255764507|r 169 E-IK-KWEFYDYVLIND---DLENSLSILKSVI 196 (222)
Q Consensus 169 E-~~-~~~~fD~vIvNd---dle~a~~~L~~iI 196 (222)
- -+ -|.--.++|..+ ++++.+..|..+.
T Consensus 135 P~~~nrWdsplf~i~~~~~~~~~~i~~~l~e~~ 167 (249)
T TIGR03574 135 PGTKYSWDLPDITIDTTKKIDYNEILEEILEIS 167 (249)
T ss_pred CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 998986557816842898889999999999985
No 97
>KOG3812 consensus
Probab=97.48 E-value=0.0013 Score=43.53 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=65.5
Q ss_pred HHHHCCCCEEECCCH-HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 322101220301452-3445553126741578986213279999999852011211289999999999999987641897
Q gi|255764507|r 100 ETISKGKDMLFDIDW-QGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDY 178 (222)
Q Consensus 100 ~~l~~g~~~ildid~-qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~~fD~ 178 (222)
.....=..+++|.|. +--.+|. .....|+.|||+..|..+|.+-++.||+. -....-..+++..+.++.-...||.
T Consensus 257 elarsLqLvvlDadtInhPaql~-ktsLaPI~v~ikvSspKvLqrLirsrGks--q~K~lnvq~va~~klaQc~~e~Fdv 333 (475)
T KOG3812 257 ELARSLQLVVLDADTINHPAQLA-KTSLAPIIVYIKVSSPKVLQRLIRSRGKS--QSKHLNVQMVAADKLAQCPPEGFDV 333 (475)
T ss_pred HHHHHCEEEEECCCCCCCHHHHC-CCCCCCEEEEEEECCHHHHHHHHHHCCCC--HHHCCCHHHHHCCHHHHCCHHHHHE
T ss_conf 99752148984488679978860-37776569999808879999999854820--4320106654023032278554121
Q ss_pred EEECCCHHHHHHHHHHHHHH
Q ss_conf 99949889999999999999
Q gi|255764507|r 179 VLINDDLENSLSILKSVIEV 198 (222)
Q Consensus 179 vIvNddle~a~~~L~~iI~~ 198 (222)
||..+.|++|++.|.+.+++
T Consensus 334 ildENqLedAcehla~yLEa 353 (475)
T KOG3812 334 ILDENQLEDACEHLAEYLEA 353 (475)
T ss_pred EECCCCHHHHHHHHHHHHHH
T ss_conf 10442179999999999999
No 98
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=97.48 E-value=0.00018 Score=49.01 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=29.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCC--CCCCCCCCCCCCHHHHHHH
Q ss_conf 99988899998999999997489805998211079899--8546875222379998665
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRP--NEVDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~--gE~~G~dY~Fvs~~~F~~~ 74 (222)
|.|+|-+.|||+||.++|+...--+...++=|||-+=. =+.+|..|.||+-.-..+.
T Consensus 455 IAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDsId~~~~~~g~~~~lIDTAGiRkk 513 (714)
T PRK09518 455 VALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDPVDEIVNIDGKDWLFVDTAGIRRK 513 (714)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEEECCEEEEEEECHHCCCC
T ss_conf 88866998878999999968975885688985023055679999978999986001524
No 99
>KOG1384 consensus
Probab=97.47 E-value=0.00069 Score=45.30 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC-EEE--------EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEE
Q ss_conf 9729999888999989999999974898-059--------9821107989985468752223799986653055244545
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN-FEM--------SISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKA 84 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~--------~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~ 84 (222)
+-+++||+||.|+||+-|+=.|..+++. +-. ...-+|-++-..|..|+-+|-...-.++..-..++|
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F---- 81 (348)
T KOG1384 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEF---- 81 (348)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCHHHCCCCCHHHHCCCCHHHHCCHHHH----
T ss_conf 7359999557777704667888975786465156335632766201668755407987677076886764269999----
Q ss_pred ECCCCCEEEECCHHHHHHHCCCCEEECCCHH-HHHHHHH-------------------CCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 6045733413211223221012203014523-4455531-------------------2674157898621327999999
Q gi|255764507|r 85 EVHGNFYGTLRDPIEETISKGKDMLFDIDWQ-GAQNLHK-------------------QMGSNVLSFFILPPTMQELCSR 144 (222)
Q Consensus 85 ~~~g~~YGt~~~~i~~~l~~g~~~ildid~q-G~~~l~~-------------------~~~~~~~~IFI~pps~e~L~~R 144 (222)
+-....+|+++.+.|++.|+.---. ....+-. .+.+++..+++.+ +..+|-+|
T Consensus 82 ------~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~VL~~~ 154 (348)
T KOG1384 82 ------EDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQAVLFER 154 (348)
T ss_pred ------HHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CHHHHHHH
T ss_conf ------99999999999857997779678406689996068774558543567888755666507999726-66777888
Q ss_pred HHHHC
Q ss_conf 98520
Q gi|255764507|r 145 LSLRA 149 (222)
Q Consensus 145 L~~R~ 149 (222)
|-.|.
T Consensus 155 l~~RV 159 (348)
T KOG1384 155 LDKRV 159 (348)
T ss_pred HHHHH
T ss_conf 98889
No 100
>PRK08118 topology modulation protein; Reviewed
Probab=97.47 E-value=0.00011 Score=50.29 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=42.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECC-CCCCCCCCCCCCCCCHHHHHHHHHCCEEE--EEEECCCCCEEEE
Q ss_conf 99988899998999999997489805998211079-89985468752223799986653055244--5456045733413
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRV-RRPNEVDGKDYYFLSLSRFNELKKANAFI--EKAEVHGNFYGTL 94 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~-~R~gE~~G~dY~Fvs~~~F~~~i~~~~Fl--E~~~~~g~~YGt~ 94 (222)
|.|+|+||||||||+++|.+.. ++.. -|.-.- =.|| .. -+++++|.++++. ++ +-|-..|||..|
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~-~ip~--~~LD~l~w~~~---w~---~~~~~e~~~~~~~--~~~~~~WIidGny~~~- 71 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL-NIPV--HHLDALFWKPN---WE---GVPKEEQRTVQNE--LVKEDEWIIDGNYGGT- 71 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCE--EECCCEEECCC---CC---CCCHHHHHHHHHH--HHHCCCEEEECCCHHH-
T ss_conf 9998899987999999999988-9697--96443476689---94---6888999999999--9838987994771779-
Q ss_pred CCHHHHHHH-CCCCEEECC
Q ss_conf 211223221-012203014
Q gi|255764507|r 95 RDPIEETIS-KGKDMLFDI 112 (222)
Q Consensus 95 ~~~i~~~l~-~g~~~ildi 112 (222)
++..++ +..++.||+
T Consensus 72 ---~~~r~~~aD~iI~Ld~ 87 (167)
T PRK08118 72 ---MDIRLNAADTIIFLDI 87 (167)
T ss_pred ---HHHHHHHCCEEEEECC
T ss_conf ---9877976999999859
No 101
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.46 E-value=0.00024 Score=48.21 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=33.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--46875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
++|.++.|+||||+||+||.+.|.... +|..|+ .+|.|..-.+.+.+.+.
T Consensus 31 ~~Ge~~~i~G~sGsGKSTLlk~i~gl~------------~p~~G~I~~~g~~i~~~~~~~~r~~ 82 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHHHHHH
T ss_conf 599699999999999999999996466------------8887659999999774999999852
No 102
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=97.44 E-value=8.2e-05 Score=51.23 Aligned_cols=57 Identities=23% Similarity=0.471 Sum_probs=41.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC--CCCCCCCCHHHHHHHHHCCEEE
Q ss_conf 79729999888999989999999974898059982110798998546--8752223799986653055244
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD--GKDYYFLSLSRFNELKKANAFI 81 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~--G~dY~Fvs~~~F~~~i~~~~Fl 81 (222)
..|-||++.||||||||||.. |+- .+ |.+.+|+.. |.+=+=.++++.-+..+.-.||
T Consensus 29 ~~GEiViltGPSGSGKTTLLt-LiG---~L--------R~~Q~G~L~vlg~~L~ga~~~~l~~~RR~iGyI 87 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLT-LIG---GL--------RSVQEGSLKVLGQELKGASKKELVQVRRNIGYI 87 (220)
T ss_pred CCCEEEEEECCCCCCHHHHHH-HHH---HH--------CCCCCCEEEEECCHHCCCCHHHHHHHHHHCCCE
T ss_conf 176479843788984688999-887---62--------565556047822010267888999998763914
No 103
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.44 E-value=0.00028 Score=47.81 Aligned_cols=52 Identities=27% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748-980599821107989985468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i 75 (222)
++|..+.|+|||||||+||.+-|+..+ |.=+.+ -.||+|..=++.+.+.+.+
T Consensus 347 ~~Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~G~I-----------~idG~di~~~~~~~lR~~i 399 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI-----------LLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-----------EECCEECCCCCHHHHHHHC
T ss_conf 5998899989999977999999828966999869-----------8999999968999998541
No 104
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.44 E-value=0.00015 Score=49.58 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=67.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE-EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 99988899998999999997489805-99821107989985468752223799986653055244545604573341321
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFE-MSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~-~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
|+|.||+||||+|+++.|.+.+ ++. .++.--=|.. -..+-. . -++....+.+|..+--.-+. ..-.+
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~-~~~~is~gdlLR~~---~~~~t~---~-g~~i~~~~~~G~lvp~~i~~----~l~~~ 69 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-GLPHISTGDLLREE---IASGTE---L-GKKAKEYIDSGKLVPDEIVI----KLLKE 69 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCEEECHHHHHHHH---HHCCCH---H-HHHHHHHHHCCCCCCHHHHH----HHHHH
T ss_conf 8998999998799999999997-98467688999999---974995---8-99999999879977899999----99999
Q ss_pred HHHHHHHCCCCEEECCCHHHHHH---HHH----CCCCCHHHHHHHCCCHHHHHHHHHHHC--------------------
Q ss_conf 12232210122030145234455---531----267415789862132799999998520--------------------
Q gi|255764507|r 97 PIEETISKGKDMLFDIDWQGAQN---LHK----QMGSNVLSFFILPPTMQELCSRLSLRA-------------------- 149 (222)
Q Consensus 97 ~i~~~l~~g~~~ildid~qG~~~---l~~----~~~~~~~~IFI~pps~e~L~~RL~~R~-------------------- 149 (222)
.+...- ..+-+|||-=|.-..+ +-. ....+ .+|++.. +.+++.+|+..|+
T Consensus 70 ~l~~~~-~~~g~ilDGfPR~~~Qa~~l~~~~~~~~~~~-~vi~l~~-~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~ 146 (194)
T cd01428 70 RLKKPD-CKKGFILDGFPRTVDQAEALDELLDEGIKPD-KVIELDV-PDEVLIERILGRRICPVSGRVYHLGKDDVTGEP 146 (194)
T ss_pred HHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-EEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 984765-4387787479798999999999997399878-8999966-899999999646767766662455667765666
Q ss_pred --CCCCHHHHHHHHHHHHHHHHH
Q ss_conf --112112899999999999999
Q gi|255764507|r 150 --KKNQEDKEKVQLRLQNAYSEI 170 (222)
Q Consensus 150 --~~~~d~~e~i~~Rl~~a~~E~ 170 (222)
.+..|+++.+..|+..+..+.
T Consensus 147 ~~~R~DD~~e~i~~Rl~~y~~~~ 169 (194)
T cd01428 147 LSQRSDDNEETIKKRLEVYKEQT 169 (194)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 67888986999999999999998
No 105
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.43 E-value=0.00019 Score=48.89 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=48.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH---HHHCCEEEEEEECCC
Q ss_conf 797299998889999899999999748-9805998211079899854687522237999866---530552445456045
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE---LKKANAFIEKAEVHG 88 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~---~i~~~~FlE~~~~~g 88 (222)
++|..+.|+||||+||+||.+.|+..+ |.-+.+ ..||+|-.=++.+.+.+ .+.++-|+-.+.+..
T Consensus 339 ~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I-----------~idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~e 407 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-----------RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-----------EEECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 8997899879999987999999997764267874-----------65010134257688863147658875025662999
Q ss_pred CC-EEEE---CCHHHHHHH
Q ss_conf 73-3413---211223221
Q gi|255764507|r 89 NF-YGTL---RDPIEETIS 103 (222)
Q Consensus 89 ~~-YGt~---~~~i~~~l~ 103 (222)
|. ||-+ .+.+..+++
T Consensus 408 NI~lg~~~~~~eei~~a~~ 426 (569)
T PRK10789 408 NIALGRPDATQQEIEHVAR 426 (569)
T ss_pred HHHCCCCCCCHHHHHHHHH
T ss_conf 9865797765458999999
No 106
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=97.42 E-value=0.00012 Score=50.05 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=70.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH--H-HCCCEEEEEEEEECCCCCCCC--CCCCCC--CCCHHHHHHHHHC-----CEE
Q ss_conf 797299998889999899999999--7-489805998211079899854--687522--2379998665305-----524
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLL--K-CDQNFEMSISVTTRVRRPNEV--DGKDYY--FLSLSRFNELKKA-----NAF 80 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~--~-~~~~~~~~v~~TTR~~R~gE~--~G~dY~--Fvs~~~F~~~i~~-----~~F 80 (222)
.+..|-.|+||||+||||+.+.|= . .-|+++ +| |++ +|+|-| .++..++++.|-- |=|
T Consensus 25 ~~n~vTAlIGPSGCGKSTlLR~lNRMnDl~~~~r-----~~-----G~v~f~G~dIy~~~~D~~~LR~~vGMVFQ~PNPF 94 (248)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR-----IE-----GKVLFDGQDIYDKKIDVVELRKRVGMVFQKPNPF 94 (248)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE-----EE-----EEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 3770589877889867899999887764078816-----88-----8898645114565668788762258521478978
Q ss_pred EEEEECCCC-CEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHC-CCCCHHHH-HHHCC--CHHHHHHHH-HHHCCCCC-
Q ss_conf 454560457-3341321122322101220301452344555312-67415789-86213--279999999-85201121-
Q gi|255764507|r 81 IEKAEVHGN-FYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQ-MGSNVLSF-FILPP--TMQELCSRL-SLRAKKNQ- 153 (222)
Q Consensus 81 lE~~~~~g~-~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~-~~~~~~~I-FI~pp--s~e~L~~RL-~~R~~~~~- 153 (222)
-. .+++| -||.....|++.-.-..+|= .+|+++ .++++.-= --.|- |.= -.+|| .+|+.+-.
T Consensus 95 pm--SIydNiayG~r~~G~~~K~~L~e~Ve--------~sL~~AALWDEVKD~L~~sa~~LSGG-QQQRLCIARalA~eP 163 (248)
T TIGR00972 95 PM--SIYDNIAYGPRLHGIKDKKELDEIVE--------ESLKKAALWDEVKDRLHDSALGLSGG-QQQRLCIARALAVEP 163 (248)
T ss_pred CC--CHHHHHHHHHHHCCCCCHHHHHHHHH--------HHHHHCCCHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHCCC
T ss_conf 84--05567545245216337789999999--------99861687135524213588978726-889999998752488
Q ss_pred -----H------HHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
Q ss_conf -----1------289999999999999987641897999498899999
Q gi|255764507|r 154 -----E------DKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLS 190 (222)
Q Consensus 154 -----d------~~e~i~~Rl~~a~~E~~~~~~fD~vIvNddle~a~~ 190 (222)
| |+ .-..+++.-..| -.+.|-.|||-+++..|-+
T Consensus 164 eVlLlDEPTSALDP-IaT~~IEeLi~e--Lk~~YTivIVTHnMqQA~R 208 (248)
T TIGR00972 164 EVLLLDEPTSALDP-IATGKIEELIQE--LKKKYTIVIVTHNMQQAAR 208 (248)
T ss_pred CEECCCCCCCCCCH-HHHHHHHHHHHH--HHHCCEEEEEECCHHHHHH
T ss_conf 52105788875787-789999999998--7652979988177567899
No 107
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00026 Score=48.02 Aligned_cols=52 Identities=31% Similarity=0.374 Sum_probs=36.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748-980599821107989985468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i 75 (222)
++|..+.|+|||||||+||.+.|+... |.-+.+ .+||.|..-++...+.+.+
T Consensus 25 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I-----------~idg~di~~~~~~~~r~~i 77 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-----------LIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE-----------EECCEECCCCCHHHHHHCE
T ss_conf 6999999999999989999999743854887489-----------9999992318999997237
No 108
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.41 E-value=0.0002 Score=48.70 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=77.3
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC
Q ss_conf 48347972999988899998999999997489--8059982110798998546875222379998665305524454560
Q gi|255764507|r 9 LTVNHRGMMLIISSPSGVGKSTIARHLLKCDQ--NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEV 86 (222)
Q Consensus 9 ~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~--~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~ 86 (222)
|.++++|.+|-++|.||||||||+++|..... +... .+++-+++........|-.-...
T Consensus 1 ~~~~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~-------------------~~LDGD~lR~~~~~~gfs~~~R~ 61 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV-------------------IYLDGDELREIFGHSGYDKESRI 61 (176)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE-------------------EEECCHHHHHHHCCCCCCHHHHH
T ss_conf 98788867999789999989999999999999759977-------------------99886899987365898999999
Q ss_pred -CCCCEEEECCHHHH-HHHCCCCEEECC-CHH-HHHH-HHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf -45733413211223-221012203014-523-4455-531267415789862132799999998520112112899999
Q gi|255764507|r 87 -HGNFYGTLRDPIEE-TISKGKDMLFDI-DWQ-GAQN-LHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQL 161 (222)
Q Consensus 87 -~g~~YGt~~~~i~~-~l~~g~~~ildi-d~q-G~~~-l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~ 161 (222)
+.-.+ ..+-. ..++|.+||+.. .|. ..+. .|+.. .+.+-|||.+| ++++++| . ..-+-.
T Consensus 62 ~n~~r~----~~lak~l~~~g~~vIvs~isp~~~~R~~~R~~~-~~~~EVyv~~p-le~~~~R----D------~KgLY~ 125 (176)
T PRK05541 62 EMALKR----AKLAAFLADQGMIVIVTTISMFNEIYAYNRKHL-PNYFEVYLKCD-MEELIRR----D------QKGLYT 125 (176)
T ss_pred HHHHHH----HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC-CCCEEEEEECC-HHHHHHC----C------CHHHHH
T ss_conf 999999----999999864698036752279899999999748-87689999489-9999873----8------541789
Q ss_pred HHHHHHHHHH--------H-HHHCCEEEECCC---HHHHHHHHHHHHH
Q ss_conf 9999999998--------7-641897999498---8999999999999
Q gi|255764507|r 162 RLQNAYSEIK--------K-WEFYDYVLINDD---LENSLSILKSVIE 197 (222)
Q Consensus 162 Rl~~a~~E~~--------~-~~~fD~vIvNdd---le~a~~~L~~iI~ 197 (222)
+.. ..|+. | ...-|.+|.|++ +++++++|...|.
T Consensus 126 ka~--~g~i~n~~Gid~pye~P~~~~~i~~t~~~s~~e~~~~Il~~lk 171 (176)
T PRK05541 126 KAL--KGEISNVVGVDIPFDEPKADLVIDNSCRTSLDEKVDLILNKLK 171 (176)
T ss_pred HHH--CCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987--5988896105689999899989879999899999999999999
No 109
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00014 Score=49.82 Aligned_cols=25 Identities=44% Similarity=0.674 Sum_probs=21.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4797299998889999899999999
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.++|-+++|+|||||||+||.+.|-
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 7389789998999998889999997
No 110
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00031 Score=47.47 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 79729999888999989999999974898059982110798998--5468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i 75 (222)
++|..+.|+||||+||+||.+.|+...+ |..| -+||.|..-.+.+.+.+.+
T Consensus 26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i 78 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD------------VDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHCE
T ss_conf 7999999998999829999999966766------------7886899999996608999997317
No 111
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.39 E-value=0.0011 Score=44.10 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=35.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHH--HHHHH-HCCEEEEC----CCHHHHHHHHHH
Q ss_conf 789862132799999998520112112-89999999999999--98764-18979994----988999999999
Q gi|255764507|r 129 LSFFILPPTMQELCSRLSLRAKKNQED-KEKVQLRLQNAYSE--IKKWE-FYDYVLIN----DDLENSLSILKS 194 (222)
Q Consensus 129 ~~IFI~pps~e~L~~RL~~R~~~~~d~-~e~i~~Rl~~a~~E--~~~~~-~fD~vIvN----ddle~a~~~L~~ 194 (222)
.+||+.+ +.+.+.+|+.+||+..... ...=-.++..+..+ +.+.. ..+.+++. .|.+..+++|..
T Consensus 145 lvIYL~a-~pe~~~~RI~kRgR~~E~~I~~~YL~~L~~~ye~~fl~~~~~~~~vlv~D~~~~~~~~~v~~~~e~ 217 (219)
T cd02030 145 LVIYLDV-PVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred EEEEEEC-CHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999839-999999999983947540899999999999999999998865896799876656659999999984
No 112
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.39 E-value=0.0004 Score=46.82 Aligned_cols=53 Identities=32% Similarity=0.422 Sum_probs=34.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--4687522237999866530
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~ 76 (222)
.++|.++.|+||||||||||.+.+.-..+ |..|+ .+|.+..-.++.++....+
T Consensus 31 i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~------------p~~G~I~~~G~~i~~~~~~~~~~~r~ 85 (269)
T PRK11831 31 VPRGKITAIMGPSGIGKTTLLRLIGGQIA------------PDHGEILFDGENIPAMSRSRLYTVRK 85 (269)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHHHH
T ss_conf 87998999993999759999999967988------------89866999998887658878998761
No 113
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.38 E-value=0.00084 Score=44.74 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=35.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 479729999888999989999999974-89805998211079899854687522237999866530
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC-DQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~-~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~ 76 (222)
.++|.++.|+||||+||+||.+.+.-- .|.-+-+ ..+|++..-.+..+-.....
T Consensus 21 i~~Ge~~~i~GpSGsGKSTLL~~i~gl~~p~sG~i-----------~~~g~~~~~~~~~~~~~~rr 75 (206)
T TIGR03608 21 IEKGKMVAIVGESGSGKSTLLNIIGLLEKPDSGQV-----------YLNGQETPPINSKKASKFRR 75 (206)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-----------EECCEECCCCCHHHHHHHHH
T ss_conf 86998999987999709999999975999897599-----------99999999899889999986
No 114
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.37 E-value=0.00036 Score=47.11 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=50.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH---HCCEEEEEEECC
Q ss_conf 797299998889999899999999748980599821107989985--468752223799986653---055244545604
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK---KANAFIEKAEVH 87 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i---~~~~FlE~~~~~ 87 (222)
++|..+.|+||||+||+||.+.|+..++ |..|+ .||+|-.=++.+.+.+.+ .++-|+-.+++.
T Consensus 359 ~~Ge~vaiVG~SGsGKSTL~~LL~gly~------------p~~G~I~idg~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~ 426 (585)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLHRVFD------------PQSGRIRIDGTDIRTVTRASLRRNIGVVFQEAGLFNRSIE 426 (585)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC------------CCCCCEEECCEECHHCCHHHHHHHCCEECCCCCCCCHHHH
T ss_conf 5998899988989869999999860157------------8879675898961016899998525221667635476599
Q ss_pred CCC-EEEE---CCHHHHHHH
Q ss_conf 573-3413---211223221
Q gi|255764507|r 88 GNF-YGTL---RDPIEETIS 103 (222)
Q Consensus 88 g~~-YGt~---~~~i~~~l~ 103 (222)
.|. ||-+ .+.+..+++
T Consensus 427 eNI~~g~~~~sd~ei~~a~~ 446 (585)
T PRK13657 427 DNLRVGRPDATDEEMRAAAE 446 (585)
T ss_pred HHHHCCCCCCCHHHHHHHHH
T ss_conf 88752799998688999999
No 115
>PRK06762 hypothetical protein; Provisional
Probab=97.36 E-value=0.00044 Score=46.53 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=23.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 729999888999989999999974898
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQN 41 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~ 41 (222)
+++|||=|.|||||+|++++|.+....
T Consensus 2 t~LIiiRGNSgSGKtT~Ak~L~~~~G~ 28 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 528999788888878999999998688
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.35 E-value=0.00064 Score=45.50 Aligned_cols=51 Identities=27% Similarity=0.394 Sum_probs=34.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHH
Q ss_conf 7972999988899998999999997-48980599821107989985--4687522237999866530
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~ 76 (222)
++|-++.|+|||||||+||.+.+.. ..|. .|+ .+|+|..-.+..+.....+
T Consensus 25 ~~Ge~v~i~GpSGsGKSTLl~~i~gl~~p~-------------sG~i~i~g~~~~~~~~~~~~~~Rr 78 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPT-------------SGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC-------------CEEEEECCEECCCCCHHHHHHHHC
T ss_conf 599899999799953999999996298988-------------649999999989899778999866
No 117
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.35 E-value=0.00031 Score=47.55 Aligned_cols=50 Identities=32% Similarity=0.417 Sum_probs=33.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--46875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
++|..+.|+||||+||+||.+.|+...+ |..|+ .+|.|-.=.+.+.+.+.
T Consensus 26 ~~G~~vaIvG~sGsGKSTLl~ll~gl~~------------p~~G~i~i~g~~~~~~~~~~~~~~ 77 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR------------PTSGRVRLDGADISQWDPNELGDH 77 (173)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHCC
T ss_conf 5999999999999809999999966666------------799989999999332899898420
No 118
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=97.34 E-value=0.00015 Score=49.59 Aligned_cols=147 Identities=26% Similarity=0.342 Sum_probs=77.6
Q ss_pred ECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC--CCEEEEEEEEECCCCCCCCCC--------CCCCCCCHHHHHHHHH
Q ss_conf 004834797299998889999899999999748--980599821107989985468--------7522237999866530
Q gi|255764507|r 7 FPLTVNHRGMMLIISSPSGVGKSTIARHLLKCD--QNFEMSISVTTRVRRPNEVDG--------KDYYFLSLSRFNELKK 76 (222)
Q Consensus 7 ~~~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~--~~~~~~v~~TTR~~R~gE~~G--------~dY~Fvs~~~F~~~i~ 76 (222)
+...+.|++.+|=|+|+||||||||+++|-+.- .+++.-+ -|| .|==|=+.+--++-..
T Consensus 11 r~~~~~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~-----------LDGDnvR~gL~~dLGFS~~DR~eNIRR 79 (187)
T TIGR00455 11 RQALNKHRGVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYV-----------LDGDNVRHGLNKDLGFSEEDRKENIRR 79 (187)
T ss_pred HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEE-----------ECCCEEECCCCCCCCCCHHHHCCCCCE
T ss_conf 998627973898511688563579999999999966974999-----------758634247788888885670568835
Q ss_pred CCEEEEEEECCCCCEEEECCHHHHH-HHCCCCEEE-CCCHHH-----HHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 5524454560457334132112232-210122030-145234-----455531267415789862132799999998520
Q gi|255764507|r 77 ANAFIEKAEVHGNFYGTLRDPIEET-ISKGKDMLF-DIDWQG-----AQNLHKQMGSNVLSFFILPPTMQELCSRLSLRA 149 (222)
Q Consensus 77 ~~~FlE~~~~~g~~YGt~~~~i~~~-l~~g~~~il-did~qG-----~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~ 149 (222)
..+|.+. ..+|.++|. -|.|-. ++.+-..++.+.+=|||..| +++=++|
T Consensus 80 ------------------igEVa~L~~~~G~i~ltsfISPyR~~R~~vR~~~~~~Gl~F~Evfv~~P-L~vcE~R----- 135 (187)
T TIGR00455 80 ------------------IGEVAKLLVRNGVIVLTSFISPYRADRQMVRELIEEGGLEFIEVFVKCP-LEVCEQR----- 135 (187)
T ss_pred ------------------EHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC-HHHHCCC-----
T ss_conf ------------------3264677764793899842177666789998875405736899721788-6863268-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH----------HHCCEEEECC--CHHHHHHHHHHH
Q ss_conf 112112899999999999999876----------4189799949--889999999999
Q gi|255764507|r 150 KKNQEDKEKVQLRLQNAYSEIKKW----------EFYDYVLIND--DLENSLSILKSV 195 (222)
Q Consensus 150 ~~~~d~~e~i~~Rl~~a~~E~~~~----------~~fD~vIvNd--dle~a~~~L~~i 195 (222)
|++=+-+ ++-.-|++.. ..=|.++--| +++++.++|.+.
T Consensus 136 -----DPKGLYk--KAR~GEIk~FTGID~pYE~P~~Pe~~~~tD~~~~~~~~~~i~~~ 186 (187)
T TIGR00455 136 -----DPKGLYK--KARNGEIKGFTGIDSPYEAPENPEVVLDTDQEDVEECVQQIIEL 186 (187)
T ss_pred -----CCCCHHH--HHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf -----9850238--86468886567878877869987068837723388899999971
No 119
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=97.34 E-value=0.00018 Score=49.06 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=33.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 79729999888999989999999974-89805998211079899854687522237999866
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC-DQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE 73 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~-~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~ 73 (222)
..|-+||++|||||||+|+.+.|-.- .|.-+.+- +||.+--=.|+.+..+
T Consensus 17 ~~GEi~vi~GlSGsGKsT~vrmlNRLIEPt~G~i~-----------IDG~~I~~~~~~eLRE 67 (372)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGQIF-----------IDGENIMKISDVELRE 67 (372)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE-----------ECCHHHHCCCHHHHHH
T ss_conf 25438999778998578999998722577787467-----------6621431369347544
No 120
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=97.34 E-value=0.00018 Score=48.97 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7299998889999899999999748
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.-.++|+|+|||||+||+|-|...+
T Consensus 500 n~k~tiVGmSGSGKsTLaKLLV~Ff 524 (710)
T TIGR01193 500 NEKITIVGMSGSGKSTLAKLLVGFF 524 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8548997367974899998752035
No 121
>KOG3209 consensus
Probab=97.34 E-value=6.6e-05 Score=51.83 Aligned_cols=53 Identities=28% Similarity=0.447 Sum_probs=49.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 0599821107989985468752223799986653055244545604573341321
Q gi|255764507|r 42 FEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 42 ~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
+.+.++.|||.++.+|++ ||-|.+...|-..-..|.|+|.+.|.+|||||++-
T Consensus 63 ~~~~~~~~~~~~~~~~~~--d~~fs~~~~~l~l~~~~~~l~~~~~~~~~ygtPkP 115 (984)
T KOG3209 63 YLFQVPCTTRRILEGEVP--DYSFSTVPIFLCLEVSGCLLEFGTYESNYYGTPKP 115 (984)
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCHHHHEEEECCEEECCCCCCCCCCCCCCC
T ss_conf 113466543354556667--40003520221011123451136766578899998
No 122
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.33 E-value=0.00049 Score=46.27 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH---HCCEEEEEEECCC
Q ss_conf 797299998889999899999999748-980599821107989985468752223799986653---0552445456045
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK---KANAFIEKAEVHG 88 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i---~~~~FlE~~~~~g 88 (222)
++|..+.|+|||||||+||.+.|+... |.-+.+ .+||.|..=++.+.+...+ .++-++-.+.+..
T Consensus 27 ~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I-----------~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~e 95 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-----------LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-----------EECCEECCCCCHHHHHHCEEEECCCCEECCCCHHH
T ss_conf 6999999999999989999999823861885189-----------99999923189999974069991589672752999
Q ss_pred CC-EEE
Q ss_conf 73-341
Q gi|255764507|r 89 NF-YGT 93 (222)
Q Consensus 89 ~~-YGt 93 (222)
|. ||-
T Consensus 96 Ni~~g~ 101 (238)
T cd03249 96 NIRYGK 101 (238)
T ss_pred HHHCCC
T ss_conf 963368
No 123
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00076 Score=45.03 Aligned_cols=53 Identities=28% Similarity=0.391 Sum_probs=35.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--4687522237999866530
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~ 76 (222)
.++|.++.|+||||||||||.+.+..-. +|..|+ .+|.+-.-.+..+.....+
T Consensus 24 i~~Ge~~~iiGpsGsGKSTLl~~i~gl~------------~p~~G~I~~~g~~i~~~~~~~l~~~R~ 78 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV------------EPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHHHHC
T ss_conf 9999899999999833999999997499------------998559999999989899899999864
No 124
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.32 E-value=0.00042 Score=46.70 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=46.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHH---HCCEEEEEEECC
Q ss_conf 79729999888999989999999974898059982110798998--5468752223799986653---055244545604
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELK---KANAFIEKAEVH 87 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i---~~~~FlE~~~~~ 87 (222)
++|..+.|+||||+||+||.+.|+..++ |..| ..||+|..=++.+...+.+ .++-|+-.+.+.
T Consensus 365 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~------------p~~G~I~idG~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~ 432 (593)
T PRK10790 365 PSRNFVALVGHTGSGKSTLASLLMGYYP------------LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432 (593)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC------------CCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 8997899879998868999999998556------------7899416599324424688886315751666514565299
Q ss_pred CCC-EEEE
Q ss_conf 573-3413
Q gi|255764507|r 88 GNF-YGTL 94 (222)
Q Consensus 88 g~~-YGt~ 94 (222)
.|. ||.+
T Consensus 433 eNi~~g~~ 440 (593)
T PRK10790 433 ANVTLGRD 440 (593)
T ss_pred HHHHHHCC
T ss_conf 99776002
No 125
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.32 E-value=0.0007 Score=45.26 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=44.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC-CCCCEE
Q ss_conf 9729999888999989999999974898059982110798998546875222379998665305524454560-457334
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEV-HGNFYG 92 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~-~g~~YG 92 (222)
++-+++|+|+.|+||||+++.|++..+.-.+.+.+..-+. ++..+|-..+...-=+++..- ......
T Consensus 42 ~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~------------l~~~~ll~~i~~~lg~~~~~~~~~~~~~ 109 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTR------------VDAEDLLRMVAADFGLETEGRDKAALLR 109 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC------------CCHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 8965999729989889999999984593454899976999------------9999999999998598988989999999
Q ss_pred EECCHHHHHHHCCCCEEECCC
Q ss_conf 132112232210122030145
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDID 113 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid 113 (222)
.-.+.+......|+.+|+.||
T Consensus 110 ~l~~~L~~~~~~g~~~vliID 130 (269)
T TIGR03015 110 ELEDFLIEQFAAGKRALLVVD 130 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEE
T ss_conf 999999999966994699972
No 126
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.32 E-value=0.00046 Score=46.43 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=38.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748-980599821107989985468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i 75 (222)
.+|..+.|+|||||||+||.+.|+... |.-+.+ -.||.|...++.+.+.+.+
T Consensus 26 ~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I-----------~i~g~di~~~~~~~~r~~i 78 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-----------LVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-----------EECCEECCCCCHHHHHHHC
T ss_conf 7999999999999859999999967765798789-----------9999995518999998601
No 127
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=97.30 E-value=0.00019 Score=48.88 Aligned_cols=183 Identities=20% Similarity=0.262 Sum_probs=98.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 9729999888999989999999974898059982110798998--54687522237999866530552445456045733
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
.+.=|.|+|.+-|||+||.+.|+...--+...++-|||-.=.. +-+|..|.|++-.-+...-+-..-+| +|
T Consensus 171 ~~iriaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~iE-------~~ 243 (438)
T PRK00093 171 DPIKIAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRRGKVTEGIE-------KY 243 (438)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHH-------HH
T ss_conf 56059995588865567888765433320479998511232679998996799998989876564213788-------99
Q ss_pred EEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCH--------HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 4132112232210122030145234455531267415--------78986213279999999852011211289999999
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNV--------LSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRL 163 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~--------~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl 163 (222)
.+.+ + ..+++.-.+|+|.+|..- .+.++ .... .+++|.. .+=.| .... ....+.+...+
T Consensus 244 s~~~-t-~~~i~~~dvvilviDa~~--~~~~q-D~~i~~~i~~~gk~~ii~v-NKwDL----v~~~---~~~~~~~~~~i 310 (438)
T PRK00093 244 SVIR-T-LKAIERADVVLLVIDATE--GITEQ-DLRIAGLALEAGRALVIVV-NKWDL----VEKD---SKTMEEVKEEL 310 (438)
T ss_pred HHHH-H-HHHHHHCCEEEEEEECCC--CCCHH-HHHHHHHHHHCCCCEEEEE-ECHHC----CCCC---HHHHHHHHHHH
T ss_conf 9999-9-999864466999997665--88488-8999999998199669999-70222----5663---89999999999
Q ss_pred HHHHHHHHHHHHCCEEEE----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999987641897999----4988999999999999988744345766999999986500
Q gi|255764507|r 164 QNAYSEIKKWEFYDYVLI----NDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEE 221 (222)
Q Consensus 164 ~~a~~E~~~~~~fD~vIv----Nddle~a~~~L~~iI~~er~~~~~~~~~~~~~~~~ll~~~ 221 (222)
. ..+.+..+...+-+ +..++.-+..+..+. +++.+.--++.+..|+++.+..+
T Consensus 311 ~---~~l~~~~~~pIvfiSA~~g~gi~kl~~~i~~v~--~~~~~ri~Ts~LN~~L~~~~~~~ 367 (438)
T PRK00093 311 R---RRLPFLDFAPIVFISALTGQGVDKLFESILEAY--ESANRRISTSVLNRVLEEAVEAH 367 (438)
T ss_pred H---HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 9---756125898779985147779999999999999--99605088899999999999708
No 128
>PRK13976 thymidylate kinase; Provisional
Probab=97.26 E-value=0.00042 Score=46.70 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=78.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE-EEECCCCCEEE
Q ss_conf 299998889999899999999748980-5998211079899854687522237999866530552445-45604573341
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNF-EMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIE-KAEVHGNFYGT 93 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~-~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE-~~~~~g~~YGt 93 (222)
++|++=|.-||||+|.++.|.+..... .......||.|..... | +.....+.+..-+. .++. .+|--
T Consensus 1 mfIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~trEPggt~~-g--------e~IR~~ll~~~~~~~~te~--lLf~A 69 (202)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVLTREPGGTSF-N--------ESVRGLLLSTKNLDKLSEL--LLFIA 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH-H--------HHHHHHHHCCCCCCHHHHH--HHHHH
T ss_conf 98999899999899999999999986069986898379999827-8--------9999997165579969999--99999
Q ss_pred EC-----CHHHHHHHCCCCEEEC------CCHHHH---------HHHHHCC---CCCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 32-----1122322101220301------452344---------5553126---74157898621327999999985201
Q gi|255764507|r 94 LR-----DPIEETISKGKDMLFD------IDWQGA---------QNLHKQM---GSNVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 94 ~~-----~~i~~~l~~g~~~ild------id~qG~---------~~l~~~~---~~~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
++ +-|...+++|++||+| +-.||. ..+.+.. .++ ++||+..| .++-.+|...++
T Consensus 70 ~R~eh~~~~I~PaL~~g~~VI~DRy~~St~AYQg~~~gl~~~~i~~l~~~~~~~~PD-lt~~Ldi~-~e~al~R~~~~~- 146 (202)
T PRK13976 70 MRREHFVKVILPALTQGKIVICDRFIDSTIAYQGYGCGIDLKLIRDLNDLVVDIYPD-ITFILDID-INQSLSRADKNG- 146 (202)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEECC-HHHHHHCCCCCC-
T ss_conf 999999999888886699899748535578873226798999999999984078988-79998378-899975214686-
Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHCCEEEE-C----CCHHHHHHHHHHHHH
Q ss_conf 12112-89999999999999987641897999-4----988999999999999
Q gi|255764507|r 151 KNQED-KEKVQLRLQNAYSEIKKWEFYDYVLI-N----DDLENSLSILKSVIE 197 (222)
Q Consensus 151 ~~~d~-~e~i~~Rl~~a~~E~~~~~~fD~vIv-N----ddle~a~~~L~~iI~ 197 (222)
.|. ......|+..+..++.....--++++ + +++++-.+.+..||.
T Consensus 147 --~e~~~~~f~~kVr~~Yl~la~~~~~r~~~I~~ida~~~i~~I~~~~~~ii~ 197 (202)
T PRK13976 147 --YEFMDLEFYARVRKGFQDIAKKNPHRCHLITCIDATDNINDINSVHLKIIK 197 (202)
T ss_pred --HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf --212059999999999999998599878999703576798999999999999
No 129
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=97.25 E-value=0.011 Score=37.49 Aligned_cols=130 Identities=24% Similarity=0.322 Sum_probs=72.7
Q ss_pred EECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC--CCEEEEEEE-EECCCCCCCCCCCCCCCCCHHHHHHH-HHCCEEE
Q ss_conf 0004834797299998889999899999999748--980599821-10798998546875222379998665-3055244
Q gi|255764507|r 6 LFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCD--QNFEMSISV-TTRVRRPNEVDGKDYYFLSLSRFNEL-KKANAFI 81 (222)
Q Consensus 6 ~~~~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~--~~~~~~v~~-TTR~~R~gE~~G~dY~Fvs~~~F~~~-i~~~~Fl 81 (222)
+||.. .+..+|-|+||+|+||+||..+|.... .+...+|-. ---.|+.| |- .-=++-.|..+ .+.+-|+
T Consensus 42 l~~~~--g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sg---Ga--iLGDr~Rm~~~~~~~~~fi 114 (325)
T PRK09435 42 LLPHT--GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTG---GS--ILGDKTRMERLSRHPNAFI 114 (325)
T ss_pred HHHCC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC---CC--HHHHHHHHHHHCCCCCEEE
T ss_conf 63017--98259974279998688999999999996798589999789999888---61--0103888876147998488
Q ss_pred EEEECCCCCEEEECCHHHHH---HHCCCCEEECCCHHHHHHHH-H-CCCCCHHHHHHHCCCHHHHHH
Q ss_conf 54560457334132112232---21012203014523445553-1-267415789862132799999
Q gi|255764507|r 82 EKAEVHGNFYGTLRDPIEET---ISKGKDMLFDIDWQGAQNLH-K-QMGSNVLSFFILPPTMQELCS 143 (222)
Q Consensus 82 E~~~~~g~~YGt~~~~i~~~---l~~g~~~ildid~qG~~~l~-~-~~~~~~~~IFI~pps~e~L~~ 143 (222)
----..|++-|++..+-+.+ -+.|.++|+ ++.-|+-+-- . ..-.+.+.+.+.|-+.+++..
T Consensus 115 Rs~~srg~lgg~~~~~~~~~~~~~a~g~d~i~-iETvGvGQ~e~~v~~~~d~~~~~~~p~~GD~~Q~ 180 (325)
T PRK09435 115 RPSPSSGTLGGVARKTRETMLLCEAAGFDVIL-VETVGVGQSETAVAGMVDFFLLLQLPGAGDELQG 180 (325)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE-EEECCCCHHHHHHHHHCCEEEEEECCCCCCHHHH
T ss_conf 40677888677335499999999977999899-9706777148899874266888835887608899
No 130
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.25 E-value=0.0011 Score=44.04 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=39.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH---CCCEEEEE---------EEEECCCCCCC--------C--CCCCCCCCCHH
Q ss_conf 479729999888999989999999974---89805998---------21107989985--------4--68752223799
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC---DQNFEMSI---------SVTTRVRRPNE--------V--DGKDYYFLSLS 69 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~---~~~~~~~v---------~~TTR~~R~gE--------~--~G~dY~Fvs~~ 69 (222)
.++|-++.|+||||||||||++.|.-- .|.=+.++ ++.++|.+.|+ . .++++.-.+..
T Consensus 23 i~~Gei~~LvG~sGsGKSTL~~~l~Gl~~~~p~~G~I~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 102 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDK 102 (520)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99998999999999699999999965144799865999603544333323442114654434566224444335686889
Q ss_pred HHHHHHHC
Q ss_conf 98665305
Q gi|255764507|r 70 RFNELKKA 77 (222)
Q Consensus 70 ~F~~~i~~ 77 (222)
.+..+...
T Consensus 103 ~~~~~~~~ 110 (520)
T TIGR03269 103 LRRRIRKR 110 (520)
T ss_pred HHHHHHCC
T ss_conf 99986616
No 131
>KOG3347 consensus
Probab=97.23 E-value=0.0024 Score=41.82 Aligned_cols=115 Identities=19% Similarity=0.352 Sum_probs=60.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC-----CCCCCCCCCHHHHHHHHHCCEEEEEEEC
Q ss_conf 47972999988899998999999997489805998211079899854-----6875222379998665305524454560
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV-----DGKDYYFLSLSRFNELKKANAFIEKAEV 86 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~-----~G~dY~Fvs~~~F~~~i~~~~FlE~~~~ 86 (222)
..+|. |++.|.+|+||+|++.+|.+.. +|.+. ...+-.++++- ++-+-|+++++..
T Consensus 5 r~~PN-ILvtGTPG~GKstl~~~lae~~-~~~~i--~isd~vkEn~l~~gyDE~y~c~i~DEdkv--------------- 65 (176)
T KOG3347 5 RERPN-ILVTGTPGTGKSTLAERLAEKT-GLEYI--EISDLVKENNLYEGYDEEYKCHILDEDKV--------------- 65 (176)
T ss_pred HCCCC-EEEECCCCCCCHHHHHHHHHHH-CCCEE--EHHHHHHHHCCHHCCCCCCCCCCCCHHHH---------------
T ss_conf 13788-7986799988025999999973-98567--45567766110210232236754567899---------------
Q ss_pred CCCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 45733413211223221012203014523445553126741578986213279999999852011211289999999
Q gi|255764507|r 87 HGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRL 163 (222)
Q Consensus 87 ~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl 163 (222)
.+.++..+..|-. |+ |+.|..-.... .++.++| +..| -+.|-.||..||- ++..|..-+
T Consensus 66 --------~D~Le~~m~~Gg~-IV--DyHgCd~Fper-wfdlVvV-Lr~~-~s~LY~RL~sRgY----~e~Ki~eNi 124 (176)
T KOG3347 66 --------LDELEPLMIEGGN-IV--DYHGCDFFPER-WFDLVVV-LRTP-NSVLYDRLKSRGY----SEKKIKENI 124 (176)
T ss_pred --------HHHHHHHHHCCCC-EE--EECCCCCCCHH-HEEEEEE-EECC-CHHHHHHHHHCCC----CHHHHHHHC
T ss_conf --------9888898756884-88--60056765011-3557999-9468-4599999997588----888876510
No 132
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=97.23 E-value=0.00025 Score=48.06 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=74.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE--EECCC-CCC------------C----CCCCCCCCCCHHHHHHHHH
Q ss_conf 299998889999899999999748980599821--10798-998------------5----4687522237999866530
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISV--TTRVR-RPN------------E----VDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~--TTR~~-R~g------------E----~~G~dY~Fvs~~~F~~~i~ 76 (222)
++|.|+|.-||||||+++.|.+ . ++... .. ..+.- .++ + .+|. +++......+-
T Consensus 1 ~iIgiTG~IgsGKStv~~~l~~-~-G~~vi-daD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~g~----idr~~L~~~vF 73 (179)
T pfam01121 1 LIVGLTGGIGSGKSTVANLFAD-L-GVPIV-DADVIARQVVEPGSPALAAIVDHFGPDILLADGQ----LDRRALRELVF 73 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHH-C-CCCEE-ECHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCCC----CCHHHHHHHHH
T ss_conf 9899857864789999999998-7-99199-1809999998658589999999819986077886----57999999985
Q ss_pred CCEE-EEEEECCCCCEEEECCHHHHHHHC--CCCEEECCCHHHHHHHHHCC--CCCHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 5524-454560457334132112232210--12203014523445553126--741578986213279999999852011
Q gi|255764507|r 77 ANAF-IEKAEVHGNFYGTLRDPIEETISK--GKDMLFDIDWQGAQNLHKQM--GSNVLSFFILPPTMQELCSRLSLRAKK 151 (222)
Q Consensus 77 ~~~F-lE~~~~~g~~YGt~~~~i~~~l~~--g~~~ildid~qG~~~l~~~~--~~~~~~IFI~pps~e~L~~RL~~R~~~ 151 (222)
++.- +.+ ...-.+=.-+..+...+.+ .+.+++++- .=+...+ ..+ .+|+|.+| .+.-.+|+..|..
T Consensus 74 ~d~~~~~~--Le~iiHP~v~~~~~~~i~~~~~~~~v~eip----LL~E~~~~~~~D-~ii~V~a~-~~~r~~Rl~~R~~- 144 (179)
T pfam01121 74 SDPEEKQW--LNAILHPLIRREMFKQLAQLTSPYVLLDVP----LLFESGLTKLCH-RVLVVDAP-VELQVERLMQRDG- 144 (179)
T ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECC----CHHCCCCCCCCC-EEEEEECC-HHHHHHHHHHCCC-
T ss_conf 48799999--998625999999999998668996999445----022067653477-59999879-9999999998059-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC-CHH
Q ss_conf 21128999999999999998764189799949-889
Q gi|255764507|r 152 NQEDKEKVQLRLQNAYSEIKKWEFYDYVLIND-DLE 186 (222)
Q Consensus 152 ~~d~~e~i~~Rl~~a~~E~~~~~~fD~vIvNd-dle 186 (222)
=+++.+..|++.-..+-...+..|+||.|+ +++
T Consensus 145 --~s~~~~~~~~~~Q~~~~~k~~~aD~vI~Nngsi~ 178 (179)
T pfam01121 145 --LSREQVQAIIAAQASREERLALADDVLDNDSGLA 178 (179)
T ss_pred --CCHHHHHHHHHHCCCHHHHHHHCCEEEECCCCCC
T ss_conf --9999999999968998999986999998989889
No 133
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.23 E-value=0.0029 Score=41.34 Aligned_cols=181 Identities=20% Similarity=0.282 Sum_probs=99.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 9729999888999989999999974898059982110798998--54687522237999866530552445456045733
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
.+.=|.|+|-+-|||+||.++|+...--+...+|-|||-.-.+ +.+|..|.|++-.-+...-+-..-+| +|
T Consensus 171 ~~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~~e-------~~ 243 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGIE-------KY 243 (429)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHH-------HH
T ss_conf 65269997488765467777765433321479998631026879999990899998988763664230477-------99
Q ss_pred EEECCHHHHHHHCCCCEEECCCHHHHHHHHHC-------C--CCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 41321122322101220301452344555312-------6--74157898621327999999985201121128999999
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDWQGAQNLHKQ-------M--GSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLR 162 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~qG~~~l~~~-------~--~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~R 162 (222)
.+. .+ ..+++...+|+|.+|..- .+.+. . ..+++ .|.. .+-. |.. +.+..+.+...
T Consensus 244 s~~-~t-~~~i~~~dvvil~iD~~~--~~~~qD~~i~~~i~~~~k~~--ii~~-NK~D----li~----~~~~~~~~~~~ 308 (429)
T TIGR03594 244 SVL-RT-LKAIERADVVLLVLDATE--GITEQDLRIAGLALEAGKAL--IIVV-NKWD----LVK----DEKTREEFKKE 308 (429)
T ss_pred HHH-HH-HHHHHHCCEEEEEEECCC--CCCHHHHHHHHHHHHCCCCE--EEEE-EHHH----CCC----CHHHHHHHHHH
T ss_conf 999-99-999874477999997665--88488899999898739976--9999-7223----037----99999999999
Q ss_pred HHHHHHHHHHHHHCCEEEE----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999987641897999----4988999999999999988744345766999999986500
Q gi|255764507|r 163 LQNAYSEIKKWEFYDYVLI----NDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEE 221 (222)
Q Consensus 163 l~~a~~E~~~~~~fD~vIv----Nddle~a~~~L~~iI~~er~~~~~~~~~~~~~~~~ll~~~ 221 (222)
+. ..+.+..+...+-+ +..++..+..+..+. +++...--++.+.+|+++.+..+
T Consensus 309 i~---~~l~~~~~~pI~fiSA~~g~gi~kl~~~i~~~~--~~~~~rI~Ts~LN~~L~~~i~k~ 366 (429)
T TIGR03594 309 LR---RKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY--ENANKRISTSKLNRVLEEAVAAH 366 (429)
T ss_pred HH---HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 99---856236898689973457789999999999999--99724188899999999999818
No 134
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=97.23 E-value=0.00026 Score=48.05 Aligned_cols=52 Identities=25% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 797299998889999899999999748-980599821107989985468752223799
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLS 69 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~ 69 (222)
+-|.++.|+||||+|||||.+.|+-.- |+=+.+ +-.|+|-.||++=-=.+.+
T Consensus 376 ~pG~~vAl~G~SGaGKSTLL~lLLGf~~P~~G~i-----~v~~~Gg~~G~~L~~~~~~ 428 (570)
T TIGR02857 376 EPGERVALVGPSGAGKSTLLNLLLGFVEPTEGAI-----VVERDGGINGVPLAEADAD 428 (570)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEE-----EEECCCCCCCCCCCCCCHH
T ss_conf 3870488862799978899999971576446468-----8744888539764211310
No 135
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00063 Score=45.57 Aligned_cols=145 Identities=23% Similarity=0.307 Sum_probs=69.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-----EEE-CCCC-CCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 9999888999989999999974898059982-----110-7989-98546875222379998665305524454560457
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSIS-----VTT-RVRR-PNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGN 89 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~-----~TT-R~~R-~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~ 89 (222)
-|+|+|+-|||||||-+.|.+.- ++.|.=+ -.| .+.. -=|.+|++ .|... |
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~-------~FR~~-------E------- 61 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIEKRTGMSIAEIFEEEGEE-------GFRRL-------E------- 61 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCHHHHHHHHHHH-------HHHHH-------H-------
T ss_conf 18997179997768999999981-99802246999999796999999998289-------99999-------9-------
Q ss_pred CEEEECCHHHH-------HHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH---CCCCCHHH-HH
Q ss_conf 33413211223-------221012203014523445553126741578986213279999999852---01121128-99
Q gi|255764507|r 90 FYGTLRDPIEE-------TISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLR---AKKNQEDK-EK 158 (222)
Q Consensus 90 ~YGt~~~~i~~-------~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R---~~~~~d~~-e~ 158 (222)
.+.+.. +++.|-=++++ .+.-..| ....++||+..| .+.|.+|+... -.-...++ +.
T Consensus 62 -----~~vl~~l~~~~~~ViaTGGG~v~~--~enr~~l----~~~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~ 129 (172)
T COG0703 62 -----TEVLKELLEEDNAVIATGGGAVLS--EENRNLL----KKRGIVVYLDAP-FETLYERLQRDRKRPLLQTEDPREE 129 (172)
T ss_pred -----HHHHHHHHHCCCEEEECCCCCCCC--HHHHHHH----HHCCEEEEEECC-HHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf -----999999862699599779861168--9999999----848858999699-9999998234667986567776899
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCH-HHHHHHHHHHHH
Q ss_conf 999999999999876418979994988-999999999999
Q gi|255764507|r 159 VQLRLQNAYSEIKKWEFYDYVLINDDL-ENSLSILKSVIE 197 (222)
Q Consensus 159 i~~Rl~~a~~E~~~~~~fD~vIvNddl-e~a~~~L~~iI~ 197 (222)
+..-++ +..-.|...-|+++..++- +..++++...+.
T Consensus 130 l~~L~~--~R~~~Y~e~a~~~~~~~~~~~~v~~~i~~~l~ 167 (172)
T COG0703 130 LEELLE--ERQPLYREVADFIIDTDDRSEEVVEEILEALE 167 (172)
T ss_pred HHHHHH--HHHHHHHHHCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999--98999997274884489984899999999998
No 136
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.23 E-value=0.00029 Score=47.68 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=23.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCC
Q ss_conf 7972999988899998999999997-489
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK-CDQ 40 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~-~~~ 40 (222)
.+|-++.|+|||||||||+++-++. ..|
T Consensus 27 ~kGem~fL~GHSGaGKST~lkLi~~~~~P 55 (216)
T TIGR00960 27 DKGEMVFLVGHSGAGKSTLLKLILGIEKP 55 (216)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 38507998568886078999999852289
No 137
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.23 E-value=0.00021 Score=48.66 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=49.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCC---CCCCCHHHHHHHHHCCEEEEEEEC-
Q ss_conf 797299998889999899999999748980599821107989985--46875---222379998665305524454560-
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKD---YYFLSLSRFNELKKANAFIEKAEV- 86 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~d---Y~Fvs~~~F~~~i~~~~FlE~~~~- 86 (222)
+.|.+|.|+|+|||||+||.+-| |+|. .|..|+ .||+| |---+--.==+++.++=+|=-.++
T Consensus 386 ~~G~~vALVGRSGSGKsTlv~Ll----PRFy--------~p~~G~IllDG~~l~d~~L~~LR~q~alVsQ~V~LFdDTiA 453 (603)
T TIGR02203 386 EPGETVALVGRSGSGKSTLVNLL----PRFY--------EPDSGQILLDGVDLQDYTLADLRRQVALVSQDVVLFDDTIA 453 (603)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC----CCCC--------CCCCCCEEECCCHHHHCCHHHHHHHHHHHCCCEEECCCCHH
T ss_conf 58735998706885389998552----3660--------45888565278404430266356230002152372053267
Q ss_pred ----CCCC--EEEECCHHHHHHHC-CCCEEECCCHHHHH
Q ss_conf ----4573--34132112232210-12203014523445
Q gi|255764507|r 87 ----HGNF--YGTLRDPIEETISK-GKDMLFDIDWQGAQ 118 (222)
Q Consensus 87 ----~g~~--YGt~~~~i~~~l~~-g~~~ildid~qG~~ 118 (222)
+|.. -+.+.+.|+.++.. .-.=++|--|+|..
T Consensus 454 ~NvaYg~~da~~~~~a~v~~A~~~Ayl~dfvd~lP~Gld 492 (603)
T TIGR02203 454 NNVAYGRLDAEQVDRAEVERALAAAYLQDFVDKLPLGLD 492 (603)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 764404234001787899999998646888714788856
No 138
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.22 E-value=0.00031 Score=47.54 Aligned_cols=50 Identities=34% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 47972999988899998999999997-48980599821107989985--46875222379998665
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
.++|-++.|+|||||||+||.+-+-- ..|. .|+ .+|.|..-.+..+....
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-------------~G~v~i~g~~~~~l~~~~~~~~ 80 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-------------SGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-------------CCEEEECCEECCCCCHHHHHHH
T ss_conf 7499899998999998999999996466788-------------8469999888675898899999
No 139
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00086 Score=44.68 Aligned_cols=58 Identities=28% Similarity=0.373 Sum_probs=39.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHHCCEEE
Q ss_conf 4797299998889999899999999748980599821107989985--468752223799986653055244
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKKANAFI 81 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~~~~Fl 81 (222)
..+|.++.|+|||||||+||.+.+..-. +|..|+ .+|.|..=.+..++..+.+.=.|+
T Consensus 28 i~~Ge~~~ivG~SGsGKSTllr~i~gL~------------~p~sG~I~~~g~~i~~~~~~~~~~~Rr~ig~V 87 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE------------RPTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87 (233)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHHHHHHHCCCCEE
T ss_conf 9999999998898058999999996799------------99980899999998979999999986258779
No 140
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00079 Score=44.93 Aligned_cols=50 Identities=30% Similarity=0.401 Sum_probs=33.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 4797299998889999899999999748-980599821107989985--46875222379998665
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
.++|-+++|+||||||||||.+.+..-. |. .|+ .+|.|-.-.+..++...
T Consensus 51 I~~GEi~~ivG~SGsGKSTLlr~i~gL~~Pt-------------~G~I~i~G~di~~~~~~~l~~~ 103 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-------------RGQVLIDGVDIAKISDAELREV 103 (400)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCC-------------CCEEEECCEECCCCCHHHHHHH
T ss_conf 8799999999999846999999997599989-------------8189999999998997898765
No 141
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.21 E-value=0.0026 Score=41.63 Aligned_cols=144 Identities=21% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH---HHCCCEEEEEEEEECCCCCCCCCCCCCCCC--------------------
Q ss_conf 834797299998889999899999999---748980599821107989985468752223--------------------
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLL---KCDQNFEMSISVTTRVRRPNEVDGKDYYFL-------------------- 66 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~---~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fv-------------------- 66 (222)
...++|.+|-|+||.||||+|+++.|. +.-+.-..+--.|| ||=+|-=.
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpm--------DGFhy~n~~L~~~glm~rKGfPeSyD~~ 148 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM--------DGFHYPNAVLDERGLMARKGFPESYDVA 148 (283)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC--------CCCCCCHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 68888879996057665577899999999963889873378714--------5454676775221220018998535689
Q ss_pred CHHHHHHHHHCCEEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHH-------CCCCCHHHHHHHCCCHH
Q ss_conf 79998665305524454560457334132112232210122030145234455531-------26741578986213279
Q gi|255764507|r 67 SLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHK-------QMGSNVLSFFILPPTMQ 139 (222)
Q Consensus 67 s~~~F~~~i~~~~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~-------~~~~~~~~IFI~pps~e 139 (222)
.--+|-..+++|.=--.+-+++|.-.-....-..+...-.++|++ |.--|.. .-.++ ++|||-+| .+
T Consensus 149 ~ll~fl~~vK~~~~~v~aPvysh~~yD~vp~~~~v~~~pdIlI~E----G~nvLq~~~p~~~~sdffD-fSIyvDa~-~~ 222 (283)
T COG1072 149 ALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVE----GNNVLQDGEPWLFLSDFFD-FSIYVDAD-EE 222 (283)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEE----CHHHHCCCCCCCCCCCCCE-EEEEECCC-HH
T ss_conf 999999999659985124323311025678850205899889991----5266258985111256221-79993699-99
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998520112112899999999999999876418
Q gi|255764507|r 140 ELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFY 176 (222)
Q Consensus 140 ~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~~f 176 (222)
.+++|+..|- ...|+-+...+-++.+.|
T Consensus 223 ~le~wyi~Rf---------l~~g~~a~~~~~~~~~~~ 250 (283)
T COG1072 223 LLEERYIERF---------LKFGLTAFEDPASYFHNY 250 (283)
T ss_pred HHHHHHHHHH---------HHHCCCHHHCHHHHHHCC
T ss_conf 9999999999---------850443432626675325
No 142
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00061 Score=45.64 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=38.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCC-CCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 4797299998889999899999999748-98059982110798-998546875222379998665305524454560457
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVR-RPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGN 89 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~-R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~ 89 (222)
..+|-.+.|+||||+|||||.+.+.--. |. .-.|..-.++. .|+ ..+-|-|= +...+-|-++.+|
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~-~G~V~~~g~~v~~p~--~~~~~vFQ----------~~~LlPW~Tv~~N 92 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPT-SGEVLLDGRPVTGPG--PDIGYVFQ----------EDALLPWLTVLDN 92 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCEEEECCCCCCCCC--CCEEEEEC----------CCCCCCHHHHHHH
T ss_conf 7799799998999788999999996878777-755998882157899--87799926----------6764514668844
Q ss_pred C
Q ss_conf 3
Q gi|255764507|r 90 F 90 (222)
Q Consensus 90 ~ 90 (222)
-
T Consensus 93 V 93 (248)
T COG1116 93 V 93 (248)
T ss_pred H
T ss_conf 3
No 143
>KOG0058 consensus
Probab=97.21 E-value=0.00048 Score=46.28 Aligned_cols=27 Identities=44% Similarity=0.623 Sum_probs=23.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
+.|.++.|+||||+||+|++.-|...+
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058 492 RPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799779998899988899999999736
No 144
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.19 E-value=0.00033 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-+++|+||||||||||.+.+..
T Consensus 47 I~~GEi~~lvGpSGsGKSTLLr~i~G 72 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNG 72 (382)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 87998999999997349999999975
No 145
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00092 Score=44.49 Aligned_cols=53 Identities=28% Similarity=0.436 Sum_probs=35.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--4687522237999866530
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~ 76 (222)
.++|-+++|+||||+|||||.+.+..-. +|-.|+ .+|.|..-.+..++.....
T Consensus 47 i~~GE~~~ivG~SGsGKSTLLr~i~GL~------------~p~~G~I~~~G~~i~~~~~~~l~~~r~ 101 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLI------------EPTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHHHHC
T ss_conf 8899999999899848999999997599------------999759999999999999899988525
No 146
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=97.19 E-value=0.00071 Score=45.20 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=75.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEE--------EEEEECCCCCCCCCCCCCCCCCH-----------------HH
Q ss_conf 9999888999989999999974898-0599--------82110798998546875222379-----------------99
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQN-FEMS--------ISVTTRVRRPNEVDGKDYYFLSL-----------------SR 70 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~-~~~~--------v~~TTR~~R~gE~~G~dY~Fvs~-----------------~~ 70 (222)
+|+|+||.|||||.|+=.|.+..+. +--+ +.=-|=+|-.+|..++=+|-++- +.
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~~~~~~~ 80 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQTQALNA 80 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 96774088554778999988768957874350232237875357889687534981585134712003708899999999
Q ss_pred HHHHHHCCEEEEEEECCCC-C------EEE----------ECCHHHHHHH-CCCCEE----ECCCHHHHHHH--------
Q ss_conf 8665305524454560457-3------341----------3211223221-012203----01452344555--------
Q gi|255764507|r 71 FNELKKANAFIEKAEVHGN-F------YGT----------LRDPIEETIS-KGKDML----FDIDWQGAQNL-------- 120 (222)
Q Consensus 71 F~~~i~~~~FlE~~~~~g~-~------YGt----------~~~~i~~~l~-~g~~~i----ldid~qG~~~l-------- 120 (222)
+...-+.|+.+- -|+|- + +|. .++.|+...+ +|...+ -.|||..+-.+
T Consensus 81 ~~~i~~~Gkipl--~VGGT~lY~k~l~~gl~~~~~~~~~~~r~~~~~~~~~~g~~~ly~~L~~~DP~~a~~ihPND~~R~ 158 (307)
T TIGR00174 81 IADITARGKIPL--LVGGTGLYLKALLEGLSPTPSAEDKLIRESLEILAERQGKSFLYKELKKVDPVAAAKIHPNDTRRV 158 (307)
T ss_pred HHHHHHCCCCEE--EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCHHHH
T ss_conf 999985698348--868578899999714777755565057999999998549157888777507698972177614789
Q ss_pred ---------------------HHCCCCCHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf ---------------------31267415789862132799999998520
Q gi|255764507|r 121 ---------------------HKQMGSNVLSFFILPPTMQELCSRLSLRA 149 (222)
Q Consensus 121 ---------------------~~~~~~~~~~IFI~pps~e~L~~RL~~R~ 149 (222)
......+++.|++.|-+.+.|.+|+..|-
T Consensus 159 ~RaLEvfY~TG~~~Se~~~~~~~~L~~~~v~~~l~~~~~e~L~~RI~~R~ 208 (307)
T TIGR00174 159 KRALEVFYATGKPISELFKEQKKELFYNIVQIGLAPLEREALHERIEQRV 208 (307)
T ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999887507865666403666541466777630058645677899999
No 147
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.17 E-value=0.00075 Score=45.06 Aligned_cols=164 Identities=22% Similarity=0.259 Sum_probs=82.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEE-EEEECC--------------CCCCCC---CCCCCCCCCHHHHHHHHHC
Q ss_conf 2999988899998999999997489805998-211079--------------899854---6875222379998665305
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSI-SVTTRV--------------RRPNEV---DGKDYYFLSLSRFNELKKA 77 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v-~~TTR~--------------~R~gE~---~G~dY~Fvs~~~F~~~i~~ 77 (222)
++|-|+|-.||||||+++.+.+ -+|..+- --..|. .+..+. ||. +++....+.+-+
T Consensus 3 ~iIglTG~igsGKStva~~~~~--~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~----~~r~~L~~~vf~ 76 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE--LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGG----LDRRKLREKVFN 76 (201)
T ss_pred EEEEEECCCCCCHHHHHHHHHH--CCCEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCH----HHHHHHHHHHCC
T ss_conf 4999957887788999999997--7993998869999988456357899999849976566510----589999999738
Q ss_pred CEE-EEEEECCCCCEEEECCH---HHHHHHCCCCEEECCCHHHHHHHHHCCCCC-H-HHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 524-45456045733413211---223221012203014523445553126741-5-78986213279999999852011
Q gi|255764507|r 78 NAF-IEKAEVHGNFYGTLRDP---IEETISKGKDMLFDIDWQGAQNLHKQMGSN-V-LSFFILPPTMQELCSRLSLRAKK 151 (222)
Q Consensus 78 ~~F-lE~~~~~g~~YGt~~~~---i~~~l~~g~~~ildid~qG~~~l~~~~~~~-~-~~IFI~pps~e~L~~RL~~R~~~ 151 (222)
+.- ..| ...-.+..-++. +......+ .+++++. -|.+..+.. + ++|.|.+| .+.-.+|+.+|+.
T Consensus 77 ~~~~~~~--Le~i~hPli~~~~~~~~~~~~~~-~~~~eip-----lL~e~~~~~~~d~Vi~V~a~-~e~r~eRl~~R~~- 146 (201)
T COG0237 77 DPEARLK--LEKILHPLIRAEIKVVIDGARSP-YVVLEIP-----LLFEAGGEKYFDKVIVVYAP-PEIRLERLMKRDG- 146 (201)
T ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHHHHHCC-CEEEEEH-----HHHHHCCCCCCCEEEEEECC-HHHHHHHHHHCCC-
T ss_conf 9999999--99665589999999999974167-6388707-----88872666668889999899-9999999983379-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC-CHHHHHHHHHHHHH
Q ss_conf 21128999999999999998764189799949-88999999999999
Q gi|255764507|r 152 NQEDKEKVQLRLQNAYSEIKKWEFYDYVLIND-DLENSLSILKSVIE 197 (222)
Q Consensus 152 ~~d~~e~i~~Rl~~a~~E~~~~~~fD~vIvNd-dle~a~~~L~~iI~ 197 (222)
.+.+....|+..-......+..-|+|+.|+ +++.+.+++..++.
T Consensus 147 --~~~e~~~~~~~~Q~~~~ek~~~ad~vi~n~~~i~~l~~~i~~~~~ 191 (201)
T COG0237 147 --LDEEDAEARLASQRDLEEKLALADVVIDNDGSIENLLEQIEKLLK 191 (201)
T ss_pred --CCHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf --999999999987389999863146476648779999999999999
No 148
>pfam00406 ADK Adenylate kinase.
Probab=97.17 E-value=0.00022 Score=48.48 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=65.8
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEE-EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECCHH
Q ss_conf 9888999989999999974898059-982110798998546875222379998665305524454560457334132112
Q gi|255764507|r 20 ISSPSGVGKSTIARHLLKCDQNFEM-SISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPI 98 (222)
Q Consensus 20 l~GpsG~GK~tl~~~L~~~~~~~~~-~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~~i 98 (222)
|.||+||||+|.++.|.+.+ ++.. ++-.-=|. |+.... -.-......+++|.++--.-+..-. .+.+
T Consensus 1 i~G~PGsGKgTqa~~La~~~-~~~~is~GdllR~----~~~~~s---~~g~~i~~~i~~G~lvpd~i~~~l~----~~~l 68 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKY-GIVHLSTGDLLRA----EVKSGT---ELGKEAKEYMDKGELVPDEVVVGLV----KERL 68 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCEEECHHHHHHH----HHHCCC---HHHHHHHHHHHCCCCCCHHHHHHHH----HHHH
T ss_conf 91889898599999999985-9906769999999----986288---7999999999869954309999999----9997
Q ss_pred HHHHHCCCCEEECCCHHHHHH---HHHCC--CCC-HHHHHHHCCCHHHHHHHHHHHC-----------------------
Q ss_conf 232210122030145234455---53126--741-5789862132799999998520-----------------------
Q gi|255764507|r 99 EETISKGKDMLFDIDWQGAQN---LHKQM--GSN-VLSFFILPPTMQELCSRLSLRA----------------------- 149 (222)
Q Consensus 99 ~~~l~~g~~~ildid~qG~~~---l~~~~--~~~-~~~IFI~pps~e~L~~RL~~R~----------------------- 149 (222)
... ...+-.|||-=|--..+ +-+.+ ... -.+|++..| .+++.+||..|.
T Consensus 69 ~~~-~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 146 (186)
T pfam00406 69 EQN-DCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVP-DEVLVERLTGRRIHPNSGRSYHLEFNPPKVPGKDD 146 (186)
T ss_pred CCC-CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 074-5548668737989899999999999749987779999737-89999999766415566881566678952136454
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHH
Q ss_conf -------112112899999999999999
Q gi|255764507|r 150 -------KKNQEDKEKVQLRLQNAYSEI 170 (222)
Q Consensus 150 -------~~~~d~~e~i~~Rl~~a~~E~ 170 (222)
.+.-|+++.|..||+.+..+.
T Consensus 147 ~~~~~l~~R~DD~~e~i~~Rl~~y~~~t 174 (186)
T pfam00406 147 VTGEPLSQRSDDNEETVKKRLETYHKQT 174 (186)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4422353789999999999999999998
No 149
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00036 Score=47.12 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=38.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC-EEEE--------EEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9729999888999989999999974898-0599--------8211079899854687522237
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN-FEMS--------ISVTTRVRRPNEVDGKDYYFLS 67 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~--------v~~TTR~~R~gE~~G~dY~Fvs 67 (222)
.+.+++|+||.+||||.|+-.|.+..+. +-.+ ..--|=+|-..|..|+-||.++
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliD 64 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLID 64 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEEC
T ss_conf 963799989887577899999999829928930235531888630799999998589978754
No 150
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.16 E-value=0.00041 Score=46.73 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=22.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
..+|.++.|+|||||||+||.+.|..
T Consensus 23 i~~Ge~~~iiG~SGsGKSTll~~i~g 48 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87998999999999819999999974
No 151
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.15 E-value=0.00037 Score=47.02 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-+++|+|||||||+||.+.+.-
T Consensus 24 ~~Ge~~~ivGpSGsGKSTLL~~i~g 48 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999998449999999981
No 152
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.14 E-value=0.00036 Score=47.12 Aligned_cols=48 Identities=33% Similarity=0.361 Sum_probs=33.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 97299998889999899999999748-980599821107989985468752223799986
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFN 72 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~ 72 (222)
.|-.+.|+||||||||||++-+.--- |.-+.+ +.||-|-.=.++|+|=
T Consensus 355 aGe~laIIGPSgSGKStLaR~~vG~W~~~~G~V-----------RLDGadl~qWD~e~lG 403 (556)
T TIGR01842 355 AGEALAIIGPSGSGKSTLARILVGIWPPASGSV-----------RLDGADLKQWDRETLG 403 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCE-----------EEEHHHHHCCCHHHCC
T ss_conf 774588874786525889878872101356533-----------6403344023753658
No 153
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00092 Score=44.49 Aligned_cols=71 Identities=25% Similarity=0.378 Sum_probs=50.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 4797299998889999899999999748980599821107989985--46875222379998665305524454560457
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKKANAFIEKAEVHGN 89 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~ 89 (222)
.+.|-+.+|+||.||||+||...++- +|++...- |+ -+|+| ++.-.-++..+.|-|+.| ++--.
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G-~p~Y~Vt~---------G~I~~~Ged---I~~l~~~ERAr~GifLaf-Q~P~e 92 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMG-HPKYEVTE---------GEILFDGED---ILELSPDERARAGIFLAF-QYPVE 92 (251)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC-CCCCEEEC---------CEEEECCCC---CCCCCHHHHHHCCCEEEE-CCCCC
T ss_conf 75982899988998788999999728-99746755---------569987854---255998688861877651-17754
Q ss_pred CEEEECC
Q ss_conf 3341321
Q gi|255764507|r 90 FYGTLRD 96 (222)
Q Consensus 90 ~YGt~~~ 96 (222)
.=|++..
T Consensus 93 i~GV~~~ 99 (251)
T COG0396 93 IPGVTNS 99 (251)
T ss_pred CCCEEHH
T ss_conf 7780099
No 154
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.14 E-value=0.00066 Score=45.40 Aligned_cols=79 Identities=29% Similarity=0.377 Sum_probs=48.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH---HCCEEEEEEECC
Q ss_conf 797299998889999899999999748980599821107989985--468752223799986653---055244545604
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK---KANAFIEKAEVH 87 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i---~~~~FlE~~~~~ 87 (222)
++|..+.|+||||+||+||.+.|+..++ |..|+ .||+|-.=++.+.+.+.+ .++-|+-.+.+.
T Consensus 366 ~~G~~vaiVG~SGsGKSTL~~LL~gly~------------p~~G~I~idg~di~~~~~~~lr~~i~~V~Q~~~lF~~TI~ 433 (581)
T PRK11176 366 PAGKTVALVGRSGSGKSTIANLLTRFYD------------IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTVA 433 (581)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHCC------------CCCCEEEECCEEHHHCCHHHHHCCCCCCCCCCEEECCCHH
T ss_conf 9994431228999867899999985366------------7887487898851214766650345560777611077299
Q ss_pred CCC-EEE----ECCHHHHHHH
Q ss_conf 573-341----3211223221
Q gi|255764507|r 88 GNF-YGT----LRDPIEETIS 103 (222)
Q Consensus 88 g~~-YGt----~~~~i~~~l~ 103 (222)
.|. ||- +.+.+..+++
T Consensus 434 eNi~~~~~~~~~~~~i~~a~~ 454 (581)
T PRK11176 434 NNIAYARTEQYSREQIEEAAR 454 (581)
T ss_pred HHHHCCCCCCCCHHHHHHHHH
T ss_conf 997226743245689999999
No 155
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.13 E-value=0.0012 Score=43.84 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=34.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--46875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
.+|..+.|+||||+||+||.+.|+...+ + .|+ +||++..-++.+.+.+.
T Consensus 28 ~~Ge~vaIvG~sGsGKSTLl~lL~gl~~------------~-~G~I~idg~~i~~~~~~~~r~~ 78 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN------------T-EGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC------------C-CCEEEECCEECCCCCHHHHHHH
T ss_conf 7999999999999979999999960357------------8-9539999880673689999763
No 156
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.13 E-value=0.0006 Score=45.68 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8347972999988899998999999997
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
+.-++|-++.|+||||||||||.+.|..
T Consensus 21 ~ipk~GEi~gLiGpNGaGKSTLlk~i~G 48 (255)
T cd03236 21 PVPREGQVLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9898980999989999709999999967
No 157
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00044 Score=46.51 Aligned_cols=52 Identities=37% Similarity=0.501 Sum_probs=34.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--468752223799986653
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i 75 (222)
.++|-++.|+||||||||||.+.+..-.+ |..|+ .+|++-.=.+..+.....
T Consensus 23 i~~Ge~~~iiG~SGsGKSTll~~i~gL~~------------p~~G~I~~~g~~i~~~~~~~~~~~r 76 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLR------------PDSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHHH
T ss_conf 87998999999999729999999975999------------8985899999999989988999975
No 158
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.13 E-value=0.00042 Score=46.65 Aligned_cols=48 Identities=35% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--46875222379998
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRF 71 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F 71 (222)
.++|-++.|+|||||||+||.+.+..-. +|..|+ .+|++..-.+....
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~~i~~~~~~~~ 77 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL------------KPTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHHH
T ss_conf 8699899999999986999999997289------------8788669989964677999999
No 159
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.13 E-value=0.00093 Score=44.46 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=51.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 72999988899998999999997-48980599821107989985468752223799986653055244545604573341
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
|.-|.|+||.|+||+||.+-|.. .+|..+++. +||+|---|+++-..+-+. +++.. =|.
T Consensus 361 G~TvAIVGPTGAGKTTLiNLLQRVydP~~G~I~-----------IDG~~I~~v~r~SLR~s~A--------TVFQD-AGL 420 (592)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPKVGQIL-----------IDGIDINTVTRESLRKSIA--------TVFQD-AGL 420 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE-----------ECCEEHHHHCHHHHHHHHH--------HHHHH-CCC
T ss_conf 756898778997178998877531069865488-----------7242400103477887887--------78731-020
Q ss_pred ECCHHHHHHHCCCCEEEC
Q ss_conf 321122322101220301
Q gi|255764507|r 94 LRDPIEETISKGKDMLFD 111 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ild 111 (222)
--.+|++.+.-|+.---|
T Consensus 421 ~~R~Ir~NI~lG~~~At~ 438 (592)
T TIGR01192 421 LNRSIRENIRLGREGATD 438 (592)
T ss_pred CCCCHHHHHCCCCCCCCH
T ss_conf 013123320037777877
No 160
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.11 E-value=0.0014 Score=43.42 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748-98059982110798998546875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~ 74 (222)
++|..+.|+||||+||+||.+.|+... |.-+.+ ..||+|..-++.+...+.
T Consensus 32 ~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G~I-----------~idg~di~~~~~~~~r~~ 83 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-----------EIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE-----------EECCEECCCCCHHHHHHH
T ss_conf 6999999999999879999999998728888789-----------999999540799999951
No 161
>KOG2004 consensus
Probab=97.11 E-value=0.0006 Score=45.68 Aligned_cols=42 Identities=31% Similarity=0.503 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEEEE
Q ss_conf 48347972999988899998999999997489--8059982110
Q gi|255764507|r 9 LTVNHRGMMLIISSPSGVGKSTIARHLLKCDQ--NFEMSISVTT 50 (222)
Q Consensus 9 ~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~--~~~~~v~~TT 50 (222)
+.+.-+|+++|++||+||||++|.+-+..... -|+|++--.|
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~t 475 (906)
T KOG2004 432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMT 475 (906)
T ss_pred HCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf 14667883799868998773218999999848746998536634
No 162
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0005 Score=46.18 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+++|+||||+||+||.+.+.-
T Consensus 23 i~~Ge~~~ivGpSG~GKSTllr~i~G 48 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999999839999999985
No 163
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00047 Score=46.36 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+++|+|||||||+||.+.+.-
T Consensus 22 v~~Ge~~~iiGpSGsGKSTLlr~i~G 47 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999996359999999974
No 164
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00063 Score=45.57 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=58.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEE---CCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEE
Q ss_conf 99998889999899999999748-98059982110---798998546875222379998665305524454560457334
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTT---RVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYG 92 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TT---R~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YG 92 (222)
+|+++|++||||+|+++.|.+.- .+...++..+. |-.+.+|-.++- +=+-++-|.+-..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~-ke~yres~~ks~~---------------- 65 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPIL-KEVYRESFLKSVE---------------- 65 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHH-HHHHHHHHHHHHH----------------
T ss_conf 69982699988017899999999972001121320145412331324037-9999999988899----------------
Q ss_pred EECCHHHHHHHCCCCEEECCCHHHHHHHHH-------CCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 132112232210122030145234455531-------2674157898621327999999985201121128999999999
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDIDWQGAQNLHK-------QMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQN 165 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid~qG~~~l~~-------~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~ 165 (222)
+ -+.+++. +..||.| |.+=...+|. ......-+|++..| .+...+|-++||.. =.+|.+.+-+.+
T Consensus 66 --r-lldSalk-n~~VIvD-dtNYyksmRrqL~ceak~~~tt~ciIyl~~p-lDtc~rrN~ergep--ip~Evl~qly~R 137 (261)
T COG4088 66 --R-LLDSALK-NYLVIVD-DTNYYKSMRRQLACEAKERKTTWCIIYLRTP-LDTCLRRNRERGEP--IPEEVLRQLYDR 137 (261)
T ss_pred --H-HHHHHHC-CEEEEEE-CCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHCCCCCC--CCHHHHHHHHHH
T ss_conf --9-9999863-6499970-6328889999999999863786599997268-89998860247999--989999999996
Q ss_pred H
Q ss_conf 9
Q gi|255764507|r 166 A 166 (222)
Q Consensus 166 a 166 (222)
.
T Consensus 138 f 138 (261)
T COG4088 138 F 138 (261)
T ss_pred H
T ss_conf 1
No 165
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.08 E-value=0.00062 Score=45.58 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=24.2
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 7972-9999888999989999999974898059
Q gi|255764507|r 13 HRGM-MLIISSPSGVGKSTIARHLLKCDQNFEM 44 (222)
Q Consensus 13 ~r~~-iivl~GpsG~GK~tl~~~L~~~~~~~~~ 44 (222)
.||. -|+++||+|||||+|++.|.+.. ++.+
T Consensus 524 nkP~GSFLF~GPTGVGKTElak~LA~~L-Gv~l 555 (774)
T TIGR02639 524 NKPVGSFLFVGPTGVGKTELAKQLAEEL-GVHL 555 (774)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHH-CCHH
T ss_conf 8816888864798962578899999970-8200
No 166
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00053 Score=46.05 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+++|+||||+|||||.+.+.-
T Consensus 23 v~~Ge~~~iiGpSGsGKSTllr~i~G 48 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 87998999999999839999999977
No 167
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0005 Score=46.17 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
..+|.+++|+||||+|||||.+.+..-.
T Consensus 24 i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8699899999999846999999997599
No 168
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.07 E-value=0.00041 Score=46.71 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
-+.|+.++|+|+|||||+||.|.|+.
T Consensus 191 l~~GkT~vl~G~SGVGKSTLiN~L~g 216 (353)
T PRK01889 191 LKPGKTVALLGSSGVGKSTLVNALLG 216 (353)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 63497899977888669999987565
No 169
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.06 E-value=0.0016 Score=42.99 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=39.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 4797299998889999899999999748-9805998211079899854687522237999866530
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~ 76 (222)
.++|-.+.|.||||+||+||.+.++.-. |.-+-. + -.|+||--.+.+.|.+.+.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l----~-------f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL----L-------FEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE----E-------ECCCCCCCCCHHHHHHHHH
T ss_conf 53885488767887668899999981369988528----8-------7473344348599999999
No 170
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.0012 Score=43.77 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=34.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748-980599821107989985468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i 75 (222)
++|..++|+||||+||+||.+.|+... |.-+.+. .||.|..=++.+.+.+.+
T Consensus 27 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~-----------idg~~i~~~~~~~~r~~i 79 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL-----------IDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-----------ECCEECCCCCHHHHHHCE
T ss_conf 79999999999998099999999668667873899-----------999995418999996328
No 171
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00053 Score=46.00 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+++|+||||+||+|+.+.+..
T Consensus 24 i~~Ge~~~ilGpSG~GKSTllr~i~g 49 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 86998999999999569999999975
No 172
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00053 Score=46.01 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-+++|+||||||||||.+.+.-
T Consensus 25 v~~Ge~~~iiGpSGsGKSTll~~i~G 50 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999999779999999976
No 173
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.05 E-value=0.00053 Score=46.01 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||||+|||||.+.|...
T Consensus 22 i~~GEiv~liGpNGaGKSTLlk~l~Gl 48 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 657989999979997699999999778
No 174
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.05 E-value=0.00059 Score=45.72 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=78.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHCCEEEEEE--ECCCCC
Q ss_conf 9729999888999989999999974898059982110798998-5468752223799986653055244545--604573
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN-EVDGKDYYFLSLSRFNELKKANAFIEKA--EVHGNF 90 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g-E~~G~dY~Fvs~~~F~~~i~~~~FlE~~--~~~g~~ 90 (222)
|-+++||+|-+|+||+||.++|... +|..+.---++-.+.- -..|.+--+.+...|..+.-.-..-.+. ...|--
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~--Gfatvee~~r~ii~~es~~gg~~lPW~D~~afael~~~~~l~q~r~~~~~~~v 85 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA--GFATVEEAGRDIIALESAQGGTALPWTDPGAFAELVGLQRLRQTRSAAVGGRV 85 (183)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC--CCEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 5338998379997689999999975--86350134166899987548976776476899999999999986401336713
Q ss_pred EEEECCHHHHHHHCCC-CEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3413211223221012-203014523445553126741578986213279999999852011211289999999999999
Q gi|255764507|r 91 YGTLRDPIEETISKGK-DMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSE 169 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~-~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E 169 (222)
+- .+. +-.+++-=+ ..=..+. .-+..+.+....++. ||+.||+......- ..| +.+.|+...+..++.++..|
T Consensus 86 Ff-DR~-~~da~a~l~~lsga~la-~~v~~~~~~~~Yn~r-Vfl~qp~~~iyqqd-e~R-k~tldeAv~~~e~lv~aYt~ 159 (183)
T COG3911 86 FF-DRG-PPDALAYLRFLSGALLA-DEVATIVREGRYNPR-VFLVQPWPFIYQQD-EER-KITLDEAVAFYEVLVAAYTE 159 (183)
T ss_pred EE-CCC-CHHHHHHHHHHCCCHHH-HHHHHHHHHCCCCCC-EEECCCCCCCCCCH-HHC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 54-157-27799999984252777-899999983577872-78638963114012-314-66888999999999999872
Q ss_pred HHHHHHCCEEEEC
Q ss_conf 9876418979994
Q gi|255764507|r 170 IKKWEFYDYVLIN 182 (222)
Q Consensus 170 ~~~~~~fD~vIvN 182 (222)
+. |+.|.+-
T Consensus 160 LG----yelv~lp 168 (183)
T COG3911 160 LG----YELVPLP 168 (183)
T ss_pred CC----CEEEECC
T ss_conf 38----4364268
No 175
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.05 E-value=0.00062 Score=45.57 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|.++.|+||||+||+||.+.+....
T Consensus 23 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8799599999999999999999996677
No 176
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.05 E-value=0.00041 Score=46.77 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
+|+..+++|||||||+||.+.|+.
T Consensus 163 ~~k~sv~~G~SGVGKSSLiN~L~~ 186 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALVP 186 (298)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 798699987898878888876071
No 177
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.05 E-value=0.00059 Score=45.71 Aligned_cols=27 Identities=48% Similarity=0.695 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||||||||||.+.+..-
T Consensus 27 i~~GE~~~iiGpNGaGKSTLlk~i~Gl 53 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 879989999989996099999999756
No 178
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00061 Score=45.65 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||||+|||||.+.+.-.
T Consensus 22 i~~GE~v~iiG~nGaGKSTLl~~i~Gl 48 (233)
T PRK10771 22 VERGEQVAILGPSGAGKSTLLNLIAGF 48 (233)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889989999999998199999999659
No 179
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.04 E-value=0.00062 Score=45.57 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.+.-
T Consensus 24 i~~Gei~~iiG~nGaGKSTLl~~i~G 49 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 84997999999999999999999837
No 180
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.04 E-value=0.00065 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 797299998889999899999999
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.+|.++.|+||||||||||.+.++
T Consensus 19 ~~G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 19 PLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899999998799986999999998
No 181
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.03 E-value=0.00065 Score=45.46 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|-++.|+||||||||||.+.+...
T Consensus 24 ~~Gei~~iiG~nGaGKSTLl~~i~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69989999889999899999999568
No 182
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.001 Score=44.14 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=30.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--46875222379998
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRF 71 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F 71 (222)
.++|-++.|+||||||||||++.|.-..+ |..|+ .+|.++.+.+....
T Consensus 28 i~~GEi~~liG~nGaGKSTL~~~l~G~~~------------~~~G~i~~~g~~~~~~~~~~~ 77 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHE------------PTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCEEEEECCEECCCCCHHHH
T ss_conf 98996999989999729999999837998------------985699999999998999999
No 183
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.03 E-value=0.0006 Score=45.67 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||||||||||.+.|...
T Consensus 30 i~~Ge~~~ilGpnGsGKSTLl~~i~G~ 56 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EECCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 918809999989996099999999678
No 184
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0006 Score=45.67 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
..+|.++.|+||||+||+||.+.+.-
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~li~G 46 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999999559999999976
No 185
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.03 E-value=0.00063 Score=45.52 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+++|+||||+||+||.+.+.-
T Consensus 23 v~~Ge~~~i~GpSG~GKSTlLr~iaG 48 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 86998999999998809999999976
No 186
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.02 E-value=0.00059 Score=45.71 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+++|+||||||||||.+.+.-
T Consensus 25 i~~GE~~~llGpSGsGKSTLlr~iaG 50 (352)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAG 50 (352)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99998999999998469999999976
No 187
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00059 Score=45.74 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+||||+|||||.+.+.-
T Consensus 27 i~~Ge~~~iiGpsGsGKSTLl~~i~G 52 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 87998999999999579999999975
No 188
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.02 E-value=0.0006 Score=45.68 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=31.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHH
Q ss_conf 4797299998889999899999999748980599821107989985--4687522237999
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSR 70 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~ 70 (222)
.++|-++.|+||||||||||.+.+.- .|.+ +|-.|+ .+|.+....+.++
T Consensus 29 i~~Gei~aiiG~nGsGKSTL~~~i~G-~~~~---------~~~~G~I~~~G~~i~~~~~~~ 79 (252)
T CHL00131 29 INAGEIHAIMGPNGSGKSTLSKVIAG-HPAY---------TVLEGDILFKGESILELEPEE 79 (252)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCC-CCCC---------CCCCCEEEECCEECCCCCHHH
T ss_conf 87998999999999999999999727-8766---------766425998772768599999
No 189
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.02 E-value=0.0015 Score=43.15 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--46875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
++|..+.|+||||+||+||.+.|+...+ |-.|+ .+|.|..-++.+++.+.
T Consensus 28 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~ 79 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE------------LSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHH
T ss_conf 6998999999999989999999967971------------898489999999661999999740
No 190
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.02 E-value=0.00068 Score=45.34 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 97299998889999899999999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.| ++.|+|||||||+||.+.++
T Consensus 22 ~G-itaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred CC-EEEEECCCCCCHHHHHHHHH
T ss_conf 98-28999999998899999999
No 191
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.02 E-value=0.00059 Score=45.72 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC
Q ss_conf 9729999888999989999999974898059982110798998546
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD 59 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~ 59 (222)
-| .|+|+|++.|||+||.++|....-......+.|||.+-.|-..
T Consensus 3 ~~-~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~ 47 (168)
T cd04163 3 SG-FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT 47 (168)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEE
T ss_conf 86-8999999999999999999589703323889826344236898
No 192
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.02 E-value=0.00065 Score=45.47 Aligned_cols=50 Identities=32% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC--CCCCCCCCCHHHHHH
Q ss_conf 47972999988899998999999997489805998211079899854--687522237999866
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV--DGKDYYFLSLSRFNE 73 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~--~G~dY~Fvs~~~F~~ 73 (222)
.++|-++.|+||||||||||.+.+.--. +|..|++ +|.+..-.+..+...
T Consensus 32 i~~GE~v~iiG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD------------TPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHH
T ss_conf 8899899999999940999999996699------------998639999999988699889998
No 193
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.01 E-value=0.00064 Score=45.52 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--46875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
++|..+.|+||||+||+||.+.|+...+ |..|+ .||.+-.=++.+.+...
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~------------p~~G~I~idg~~i~~~~~~~lr~~ 89 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ------------PQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEEHHHCCHHHHHHC
T ss_conf 2999999999999849999999964546------------788789999999344899999732
No 194
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=97.01 E-value=0.0006 Score=45.67 Aligned_cols=157 Identities=16% Similarity=0.254 Sum_probs=71.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 47972999988899998999999997-48980599821107989985468752223799986653055244545604573
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
...|.|+.|.|||||||+||.+.+.- +.|+-+.+. .+|.| +|+...... .=.|+ +-||
T Consensus 23 v~~G~lvaLLGPSGSGKsTLLR~iAGLe~pd~G~I~-----------~~G~D---~t~~~~~~R--~iGFV-----FQ~Y 81 (241)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRVIAGLEQPDSGRII-----------LNGRD---ATRVKLRDR--EIGFV-----FQHY 81 (241)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-----------EEECC---CCCCCCCCC--CCCEE-----EEHH
T ss_conf 438527985468987378999998357999842699-----------85200---221320136--21227-----7001
Q ss_pred EEEECCHHHHHHHCCCCEE------------------ECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHH-HHHCCC
Q ss_conf 3413211223221012203------------------014523445553126741578986213279999999-852011
Q gi|255764507|r 91 YGTLRDPIEETISKGKDML------------------FDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRL-SLRAKK 151 (222)
Q Consensus 91 YGt~~~~i~~~l~~g~~~i------------------ldid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL-~~R~~~ 151 (222)
=--.-=+|.+.++=|-.+- |.+ -+...+...||.+. |.- -+.|. .+|+..
T Consensus 82 AlF~HlTv~~NiAFGL~~~p~~~k~~~~~~k~~V~~LL~l--vqL~~l~~rYP~QL--------SGG-QrQRvALARALA 150 (241)
T TIGR00968 82 ALFKHLTVRDNIAFGLEIRPRREKHPKAKIKARVEELLEL--VQLEGLGDRYPNQL--------SGG-QRQRVALARALA 150 (241)
T ss_pred HHCCCCCHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH--HHHHHHHHCCCCCC--------CCC-HHHHHHHHHHHH
T ss_conf 3125651110100142230210267578899999999998--74654431274203--------573-378999998863
Q ss_pred CC------H-----HHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 21------1-----2899999999999999876418979994988999999999999988
Q gi|255764507|r 152 NQ------E-----DKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILKSVIEVER 200 (222)
Q Consensus 152 ~~------d-----~~e~i~~Rl~~a~~E~~~~~~fD~vIvNddle~a~~~L~~iI~~er 200 (222)
=. | -+..+.+-|++=..++-..-.+.-|.|.+|.++|.+--..|+-.++
T Consensus 151 v~P~vLLLDEPFgALDAkvRk~LR~WLR~LH~e~~~T~VfVTHD~~EA~evAd~ivv~~~ 210 (241)
T TIGR00968 151 VEPQVLLLDEPFGALDAKVRKELRAWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVLSN 210 (241)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 398157620871454289999999999874030567799986285899888744013217
No 195
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.0024 Score=41.83 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=36.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--468752223799986653
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i 75 (222)
.++|-++.|+|+|||||+||.+.|+.-. +|..|+ .+|.|-.-.+..+.....
T Consensus 35 i~~GE~l~ivGeSGsGKSTL~r~i~gl~------------~p~sG~I~~~g~~l~~~~~~~~~~~r 88 (266)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGLE------------SPSQGNISWRGEPLAKLNRAQRKAFR 88 (266)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHHHH
T ss_conf 8899899999999977999999996699------------99962998899956758999999975
No 196
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00072 Score=45.17 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|.++.|+|||||||+||.+.|..-
T Consensus 33 ~~Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 59989999999999799999999649
No 197
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00067 Score=45.36 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|-++.|+||||||||||.+.|..-.
T Consensus 31 ~~GE~vaivG~nGsGKSTL~k~l~Gl~ 57 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999999965999999997288
No 198
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.00072 Score=45.16 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 797299998889999899999999
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
..|-.++|.||||+||||+.+.+.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 479799998999888899999996
No 199
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00073 Score=45.15 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||||||||||.+.|..-
T Consensus 49 i~~Ge~vaIIG~nGsGKSTL~~~l~Gl 75 (320)
T PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 859989999949998499999999758
No 200
>KOG1969 consensus
Probab=96.98 E-value=0.00088 Score=44.62 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=64.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEE-----------------------EEE---ECCCC--CCCCCCCCCCCC
Q ss_conf 72999988899998999999997489805998-----------------------211---07989--985468752223
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSI-----------------------SVT---TRVRR--PNEVDGKDYYFL 66 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v-----------------------~~T---TR~~R--~gE~~G~dY~Fv 66 (222)
.+|.+|+||.|.||+||+.-. .+.-+|..+= |.+ +||.= .+|+||-.--||
T Consensus 326 kKilLL~GppGlGKTTLAHVi-AkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~V 404 (877)
T KOG1969 326 KKILLLCGPPGLGKTTLAHVI-AKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAV 404 (877)
T ss_pred CCEEEEECCCCCCHHHHHHHH-HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 006875368878724799999-9862854887325554347889999999886411225688863599842468728999
Q ss_pred CHHHHHHHHHCCEEEEEEECCCCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 79998665305524454560457334132112232210122030145234455531267415789862132799999998
Q gi|255764507|r 67 SLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLS 146 (222)
Q Consensus 67 s~~~F~~~i~~~~FlE~~~~~g~~YGt~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~ 146 (222)
+.+..++.+..-.+++.-.++- |-.+..=...+..-.+||++ =.=+-.||...+. +..|.+.||+...|-+||.
T Consensus 405 --dvilslv~a~~k~~~Gkq~~~~-~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~-A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969 405 --DVILSLVKATNKQATGKQAKKD-KKRKKKRSKLLTRPIICICN--DLYAPALRPLRPF-AEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred --HHHHHHHHHHCCHHHCCCCCCH-HHHHHHCCCCCCCCEEEEEC--CCCCHHHHHCCCC-EEEEEECCCCHHHHHHHHH
T ss_conf --9999999741614216866320-34555304654587789864--7555333310210-4899956997668999999
No 201
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.98 E-value=0.00078 Score=44.96 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=10.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 97299998889999899999999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
+++++.++||+||||||.+-+|.
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLA 215 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 67279997788875788999999
No 202
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.97 E-value=0.00072 Score=45.18 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=35.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--468752223799986653
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i 75 (222)
.++|..++|+||||+||+||.+.|+... +|..|+ +||+|-.=++...+...+
T Consensus 27 i~~G~~v~ivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g~~~~~~~~~~~r~~i 80 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY------------KPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECCEEHHHHCHHHHHHCE
T ss_conf 8799999999999985999999996725------------47865899999995772599997326
No 203
>PRK10744 phosphate transporter subunit; Provisional
Probab=96.97 E-value=0.00079 Score=44.93 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+|||||||+||.+.|..
T Consensus 34 ~~Ge~~~liG~nGaGKSTLlk~i~g 58 (257)
T PRK10744 34 AKNQVTAFIGPSGCGKSTLLRTFNK 58 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998999999999819999999987
No 204
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00081 Score=44.86 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|.++.|.|||||||+||.+.|...
T Consensus 31 ~~Gei~~llG~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 09849999989999889999998378
No 205
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0027 Score=41.53 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=37.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHHCCEEE
Q ss_conf 797299998889999899999999748980599821107989985--468752223799986653055244
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKKANAFI 81 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~~~~Fl 81 (222)
++|-++.|+|||||||+||.+.+.- . .+|..|+ .+|+|-.-.+..+.....+.=.|+
T Consensus 29 ~~Gei~giIG~SGaGKSTLlr~i~g-L-----------~~ptsG~I~~~G~dl~~l~~~~l~~~Rr~Ig~i 87 (343)
T PRK11153 29 PAGQIYGVIGASGAGKSTLIRCVNL-L-----------ERPTSGSVIVDGQDLTTLSESELTKARRQIGMI 87 (343)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC-C-----------CCCCCEEEEECCEECCCCCHHHHHHHHCCEEEE
T ss_conf 8998999999999869999999965-9-----------999963999999999879988999986386999
No 206
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.96 E-value=0.00085 Score=44.72 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=36.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEE--------EEEEE-CCCCCCCCCCCCCCCCCHHHHHHHHHCCE
Q ss_conf 7299998889999899999999748980599--------82110-79899854687522237999866530552
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMS--------ISVTT-RVRRPNEVDGKDYYFLSLSRFNELKKANA 79 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~--------v~~TT-R~~R~gE~~G~dY~Fvs~~~F~~~i~~~~ 79 (222)
..+|.|-|||||||+|+++.+.+.-. |.|. +.|.- |.. .++.| +.+++.+-+++....
T Consensus 2 ~~~IAIDGPs~aGKStvak~~A~~L~-y~yldsG~mYR~~a~~~qrsL----~~~~d--~~~E~~L~~L~~~~d 68 (223)
T TIGR00017 2 KMIIAIDGPSGAGKSTVAKAVAEKLG-YKYLDSGAMYRALALAAQRSL----QNRVD--LTDEDALLELISQLD 68 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCHHHHHHHHHHHHHH----HCCCC--CCCHHHHHHHHHHCC
T ss_conf 86376237764655789999998629-502144328999999999887----40688--568488999986326
No 207
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.96 E-value=0.00078 Score=44.94 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.+|.++.|+||||+||+||.+.|+...
T Consensus 25 ~~Ge~~~IvG~sGsGKSTLl~~l~g~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699999999999980999999985556
No 208
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.96 E-value=0.00062 Score=45.61 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=31.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC
Q ss_conf 9999888999989999999974898059982110798998546
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD 59 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~ 59 (222)
=|+|+|++.|||+||.++|......+....|.|||.+-.+..+
T Consensus 3 ~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~ 45 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID 45 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEE
T ss_conf 9999889999899999999689733432889847863267895
No 209
>PRK13808 adenylate kinase; Provisional
Probab=96.96 E-value=0.0044 Score=40.15 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=78.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCC-CCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 999888999989999999974898059982110798-9985468752223799986653055244545604573341321
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVR-RPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~-R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
|||.||+|+||.|.+..|.+.+.-.+.+.--.=|.. ..+..-| .+-...+++|.++--.- .-+.-.+
T Consensus 3 IIlLGPPGsGKGTQA~~L~~~~gi~hISTGDmLR~aI~~~T~LG--------~kaK~im~~G~LVPDeI----Vi~lI~e 70 (297)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVG--------LKAKDIMASGGLVPDEV----VVGIISD 70 (297)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHH--------HHHHHHHHCCCCCCHHH----HHHHHHH
T ss_conf 99978999985899999999869886758699999997599879--------99999997669888899----9999999
Q ss_pred HHHHHHHCCCCEEECCCHH------HHHHHHHC--CCCCHHHHHHHCCCHHHHHHHHHHHCC---------CCCHHHHHH
Q ss_conf 1223221012203014523------44555312--674157898621327999999985201---------121128999
Q gi|255764507|r 97 PIEETISKGKDMLFDIDWQ------GAQNLHKQ--MGSNVLSFFILPPTMQELCSRLSLRAK---------KNQEDKEKV 159 (222)
Q Consensus 97 ~i~~~l~~g~~~ildid~q------G~~~l~~~--~~~~~~~IFI~pps~e~L~~RL~~R~~---------~~~d~~e~i 159 (222)
.|... ....-.|||-=|- +...+... ...+. +|.+..+ -+.|-+|+..|.. +.-|++|.+
T Consensus 71 rL~~~-d~~~GfILDGFPRTv~QAEaLD~~L~~~g~~LD~-VIel~Vd-d~~Lv~RI~~R~~e~~a~Ge~~R~DDn~E~~ 147 (297)
T PRK13808 71 RIEQP-DAANGFILDGFPRTVPQAEALDALLKDKQLKLDA-VVELRVN-EGALLARVETRVAEMRARGEEVRADDTPEVL 147 (297)
T ss_pred HHCCC-CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCE-EEEEECC-HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 96685-6678987228999989999999999818999786-8997678-8999999998888776148878889999999
Q ss_pred HHHHHHHHHHH----HHHHHCC-EEEEC--CCHHHHHHHHHHHHHH
Q ss_conf 99999999999----8764189-79994--9889999999999999
Q gi|255764507|r 160 QLRLQNAYSEI----KKWEFYD-YVLIN--DDLENSLSILKSVIEV 198 (222)
Q Consensus 160 ~~Rl~~a~~E~----~~~~~fD-~vIvN--ddle~a~~~L~~iI~~ 198 (222)
..||..+..+- .|+..=. ..-|+ .++|+.+.+|..|+.+
T Consensus 148 ~kRL~~Y~~qT~Pl~~yY~e~~~L~~VDGm~~IDeVt~~I~r~l~a 193 (297)
T PRK13808 148 AKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAA 193 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9999999982012599987169578622866099999999999999
No 210
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.95 E-value=0.00077 Score=44.99 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.|.-
T Consensus 24 i~~Ge~~aliG~sGsGKSTLl~~l~g 49 (248)
T PRK11264 24 VKPGEVVAIIGPSGSGKTTLLRCINL 49 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 87998999999999809999999975
No 211
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.94 E-value=0.00087 Score=44.66 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=23.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|.++.|+||+|||||||.+.+.-..
T Consensus 22 i~~Ge~~~liGpNGaGKSTllk~i~Gl~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8599899999999986999999997687
No 212
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.94 E-value=0.00088 Score=44.63 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CC
Q ss_conf 797299998889999899999999748-98
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QN 41 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~ 41 (222)
++|.++.|+||+|+|||||.+.+.... |.
T Consensus 25 ~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~ 54 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPE 54 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 799799998899987999999997785889
No 213
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=96.94 E-value=0.00087 Score=44.66 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=23.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|-++.|+||||+||+||.+.+....
T Consensus 30 ~~GEi~~iiG~nGaGKSTLl~~i~G~~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799799998889988999999985678
No 214
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00081 Score=44.84 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=21.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4797299998889999899999999
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.++|.++.|+|||||||+||.+.|.
T Consensus 25 i~~Ge~~~iiG~nGaGKSTLl~~l~ 49 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 8799899999999971999999996
No 215
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.94 E-value=0.00081 Score=44.84 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|..+.|+|||||||+||.+.|+...
T Consensus 61 ~~Ge~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 499999999999981999999995787
No 216
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00071 Score=45.23 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+||||||||||.+.|..
T Consensus 18 ~~Ge~vaiiG~sGsGKSTLl~~l~G 42 (276)
T PRK13634 18 PSGSYVAIIGHTGSGKSTLLQHLNG 42 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999999699999999974
No 217
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.92 E-value=0.00088 Score=44.60 Aligned_cols=25 Identities=44% Similarity=0.714 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+|.++.|+||||||||||.+.+..
T Consensus 25 ~~Ge~~~liG~nGsGKSTll~~i~G 49 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7998999999999809999999963
No 218
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00081 Score=44.83 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.+++|.||||+||+||.+.+.-
T Consensus 27 ~~Ge~~~llGpsG~GKSTllr~i~G 51 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7998999999997369999999977
No 219
>COG4639 Predicted kinase [General function prediction only]
Probab=96.92 E-value=0.0016 Score=43.03 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=68.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC---CE
Q ss_conf 729999888999989999999974898059982110798998546875222379998665305524454560457---33
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGN---FY 91 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~---~Y 91 (222)
..+++|.|+|||||+|.++......+ . +|-+.|........--| ...|+ ..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~~--~----------------------lsld~~r~~lg~~~~~e--~sqk~~~~~~ 55 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQNY--V----------------------LSLDDLRLLLGVSASKE--NSQKNDELVW 55 (168)
T ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC--E----------------------ECHHHHHHHHHHCHHHH--HCCCCHHHHH
T ss_conf 44899866887764289997179953--4----------------------14999998862020466--5013379999
Q ss_pred EEECCHHHHHHHCCCCEEECCCH---H---HHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 41321122322101220301452---3---44555312674157898621327999999985201121128999999999
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDW---Q---GAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQN 165 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~---q---G~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~ 165 (222)
-.........+..|+..|+|-.- . -...|-+.++...+.|.+..| .+.+.+|-+.|.+ .-.++.|...+..
T Consensus 56 ~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp-~~~c~aRNk~~~R--qv~~~VI~r~~r~ 132 (168)
T COG4639 56 DILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTP-LELCLARNKLRER--QVPEEVIPRMLRE 132 (168)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEECC-HHHHHHHHHCCCH--HCCHHHHHHHHHH
T ss_conf 999999999997397689975458999999999999983976899998188-9999877404400--1798999999998
Q ss_pred HHHHHHHHHHCCEEEECCCHH
Q ss_conf 999998764189799949889
Q gi|255764507|r 166 AYSEIKKWEFYDYVLINDDLE 186 (222)
Q Consensus 166 a~~E~~~~~~fD~vIvNddle 186 (222)
.........|-++..+...+
T Consensus 133 -~~~~l~~e~~~~~~~~~s~e 152 (168)
T COG4639 133 -TIDLLEKEPFRYVWTLSSPE 152 (168)
T ss_pred -HHHHCCCCCEEEEEECCCHH
T ss_conf -77540578747887438877
No 220
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00073 Score=45.14 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+++|.||||+||+|+.+.+.-
T Consensus 29 i~~Ge~~~llGpSG~GKTTlLr~iaG 54 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999996499999999976
No 221
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00088 Score=44.62 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-.+.|+||||||||||.+.+..
T Consensus 34 i~~GE~v~iiG~nGsGKSTL~r~l~g 59 (281)
T PRK13633 34 VKKGEFLVILGHNGSGKSTIAKHMNA 59 (281)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 87998999999999849999999975
No 222
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.92 E-value=0.0008 Score=44.90 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--46875222379998665
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~ 74 (222)
.++|-++.|+||||||||||.+.+..-. +|..|+ .+|.+.+-.+.++...+
T Consensus 33 i~~GE~v~ivG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~G~~~~~~~~~~~~~~ 85 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLD------------DGSSGEVSLVGQPLHNMDEEARAKL 85 (228)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHHH
T ss_conf 9999899999999858999999996699------------9996799999999997998899876
No 223
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0008 Score=44.88 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-CCC
Q ss_conf 79729999888999989999999974-898
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC-DQN 41 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~-~~~ 41 (222)
.+|.++.|+||||||||||.+.+..- .|.
T Consensus 36 ~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~ 65 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETPT 65 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 799899999899888999999996589888
No 224
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.92 E-value=0.00085 Score=44.71 Aligned_cols=49 Identities=37% Similarity=0.470 Sum_probs=31.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--4687522237999866
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNE 73 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~ 73 (222)
++|-++.|+||||+|||||.+.+.--.+ |..|+ .+|++..-.+..+...
T Consensus 28 ~~Ge~~~iiG~sGsGKTTll~~i~Gl~~------------p~~G~I~~~g~~i~~~~~~~~~~ 78 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR------------PTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCEEEEECCEECCCCCHHHHHH
T ss_conf 6998999999999869999999966999------------99649999999988799899999
No 225
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=96.91 E-value=0.001 Score=44.24 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=26.4
Q ss_pred CEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 30004834797299998889999899999999748
Q gi|255764507|r 5 RLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 5 ~~~~~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.+.|....+-|-|++|+||||+||+|.++.|.+..
T Consensus 108 ~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKel 142 (670)
T TIGR00602 108 QVLESAKKRGGSILLITGPSGCGKSTTIKILSKEL 142 (670)
T ss_pred HCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 00204566775378841755884478999998886
No 226
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.91 E-value=0.002 Score=42.38 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|-++.|+||||||||||++.|....
T Consensus 27 ~~Ge~~~LvG~NGaGKSTL~k~l~G~l 53 (490)
T PRK10938 27 NAGDSWAFVGSNGSGKSALARALAGEL 53 (490)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999799977999999995699
No 227
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.91 E-value=0.00093 Score=44.46 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+||||||||||.+.+.-
T Consensus 28 i~~Gei~~iiG~sGsGKSTLl~~i~g 53 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 87997999998999819999999965
No 228
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.90 E-value=0.00091 Score=44.53 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+||||+||+||.+.+.-
T Consensus 40 I~~GE~~~llGpSGsGKSTLlr~iaG 65 (378)
T PRK09452 40 INNGEFLTLLGPSGCGKTTVLRLIAG 65 (378)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99998999998999769999999976
No 229
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.90 E-value=0.0016 Score=42.95 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-CCCEEE----EEEEEECCCCC
Q ss_conf 79729999888999989999999974-898059----98211079899
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC-DQNFEM----SISVTTRVRRP 55 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~-~~~~~~----~v~~TTR~~R~ 55 (222)
..|.++.|+||||+||+||.+-..-. .|..+- -+.||..+|-.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE 70 (231)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCCCC
T ss_conf 678579997788865788999987424778745898572147689544
No 230
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.90 E-value=0.0018 Score=42.56 Aligned_cols=51 Identities=25% Similarity=0.250 Sum_probs=37.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 79729999888999989999999974898059982110798998--5468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i 75 (222)
++|..+.|+||||+||+||.+-|....+ |-.| ..||+|..=++.+.+.+.+
T Consensus 489 ~~Ge~vaIvG~sGsGKSTL~kll~Gl~~------------p~~G~i~idg~~~~~~~~~~~r~~i 541 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ------------PTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHCCCCC------------CCCCEEEECCEECCCCCHHHHHHHC
T ss_conf 7997899980589878899998556758------------9988799898542549999997302
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.90 E-value=0.0009 Score=44.56 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
..+|.++.|+||||||||||.+.+....
T Consensus 24 i~~Ge~~aliG~nGaGKSTLl~~i~G~l 51 (273)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKVLAGEL 51 (273)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899899999999976999999995678
No 232
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.89 E-value=0.00075 Score=45.05 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
+|++.|++|+|||||+||.++|.-
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 588499988887769998874172
No 233
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=96.89 E-value=0.00057 Score=45.84 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
+++.-|++|||||||+||.++|+.
T Consensus 206 ~~ktsvf~GqSGVGKSSLiN~L~p 229 (344)
T PRK12288 206 TGRISIFVGQSGVGKSSLINALLP 229 (344)
T ss_pred CCCEEEEEECCCCCHHHHHHHCCC
T ss_conf 678599980687678888761075
No 234
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.89 E-value=0.00059 Score=45.71 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=37.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC--CCCCCCCCCHHH
Q ss_conf 2999988899998999999997489805998211079899854--687522237999
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV--DGKDYYFLSLSR 70 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~--~G~dY~Fvs~~~ 70 (222)
.=|+|+|.+.||||||.++|+..........|.|||.+-.+.. +|..|.|++-.-
T Consensus 3 ~~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpG 59 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAG 59 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCC
T ss_conf 899999899998999999983898444349999157332899999998899985788
No 235
>KOG0056 consensus
Probab=96.89 E-value=0.0015 Score=43.23 Aligned_cols=52 Identities=33% Similarity=0.404 Sum_probs=37.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 97299998889999899999999748980599821107989985468752223799986653
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i 75 (222)
-|+.+.|+||||+||+||++-|+..++--.-++ ++||+|-.-|+.....+.|
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI----------~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI----------TIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE----------EECCCHHHHHHHHHHHHHC
T ss_conf 996899977898866689999999940557608----------9867017888799899756
No 236
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0009 Score=44.54 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|..+.|+||||||||||.+.|..
T Consensus 32 ~~Ge~vaiiG~nGsGKSTL~~~l~G 56 (283)
T PRK13640 32 PRGSWTALIGHNGSGKSTISKLING 56 (283)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8999999999999879999999964
No 237
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.89 E-value=0.0012 Score=43.77 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 99998889999899999999748980
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNF 42 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~ 42 (222)
||-|+|+||||||||++.|.+..++.
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~~~ 26 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNC 26 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 98996888875999999999987998
No 238
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.001 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+|||||||+||.+.|..
T Consensus 31 ~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 2883999999999988999999837
No 239
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00093 Score=44.46 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.+..
T Consensus 30 I~~Ge~~aiiG~nGsGKSTLl~~l~G 55 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 86998999999999819999999970
No 240
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.89 E-value=0.001 Score=44.20 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.|.-
T Consensus 25 i~~Gei~~liGpNGaGKSTLlk~i~G 50 (257)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSG 50 (257)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 86998999999999879999999856
No 241
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.89 E-value=0.00095 Score=44.41 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.++-
T Consensus 23 v~~Gei~~iiGpnGaGKSTLl~~i~G 48 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 87998999996899999999999707
No 242
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.00089 Score=44.57 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 47972999988899998999999997489
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
.++|.++.|+||||+||+|+++.++...+
T Consensus 26 v~~Ge~~aiiG~SGsGKStl~k~llgll~ 54 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999998789999999957998
No 243
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.0012 Score=43.73 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 7972999988899998999999997489
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
++|.++.|+|||||||+||.+..+....
T Consensus 19 ~~Ge~~~iiG~nGsGKSTLl~~~~~~~~ 46 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASG 46 (176)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8998999999999989999998887610
No 244
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.88 E-value=0.0011 Score=44.02 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8347972999988899998999999997
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
+-.++|-++.|+||||+||+||.+.|.-
T Consensus 20 ~~v~~GEiv~ilGpNGaGKSTllk~i~G 47 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9558998999989999999999999968
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.87 E-value=0.00095 Score=44.41 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+||||+||+||.+.++.
T Consensus 29 ~~Ge~~~IvG~sGsGKSTLl~~i~G 53 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 6998999999999858999999818
No 246
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.0013 Score=43.44 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEEEC-C
Q ss_conf 834797299998889999899999999748980599821107989985468752223799986653055-24454560-4
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKAN-AFIEKAEV-H 87 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~-~FlE~~~~-~ 87 (222)
.+.++|.+|-|+|.|||||+||++.|.+..... |..-.+++-+.|......+ .|-..... +
T Consensus 19 ~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~-----------------~~~~~~LDGD~lR~~l~~dlgfs~~dR~~n 81 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHEL-----------------GVHTYLLDGDNVRHGLCSDLGFSDADRKEN 81 (198)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-----------------CCCEEEECHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 868998699987999998899999999999975-----------------997599777999874366789899999999
Q ss_pred CCCEEEECCHHHHH-HHCCCCEEEC-CCHHH-H-HHHHHCCCC-CHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 57334132112232-2101220301-45234-4-555312674-157898621327999999985201121128999999
Q gi|255764507|r 88 GNFYGTLRDPIEET-ISKGKDMLFD-IDWQG-A-QNLHKQMGS-NVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLR 162 (222)
Q Consensus 88 g~~YGt~~~~i~~~-l~~g~~~ild-id~qG-~-~~l~~~~~~-~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~R 162 (222)
-..+ ..+-.. .++|.+||+. +.|.. . ...|+.++. +.+-|||.+| ++++++|= ..-+..+
T Consensus 82 ~~r~----~~lak~l~~~G~iVIvs~Isp~~~~R~~~R~~~~~~~f~EIyl~~~-le~c~~RD----------~KgLY~k 146 (198)
T PRK03846 82 IRRV----GEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARD----------PKGLYKK 146 (198)
T ss_pred HHHH----HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHCC----------CHHHHHH
T ss_conf 9999----9999999858983664147887999999998678775799994388-99998738----------1657889
Q ss_pred HHHHHHHHHH----------HHHCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 9999999987----------64189799949--88999999999999
Q gi|255764507|r 163 LQNAYSEIKK----------WEFYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 163 l~~a~~E~~~----------~~~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
.. ..|++. ...-|.+|.++ ++++++.+|...|.
T Consensus 147 a~--~gei~n~~Gvd~pyE~P~~pdl~Idt~~~si~~~~~~I~~~l~ 191 (198)
T PRK03846 147 AR--AGEIKNFTGIDSPYEAPESPEIHLDTGEQLVTNLVEQLLDYLR 191 (198)
T ss_pred HH--CCCCCCCEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 86--5888884007889999999806986999999999999999999
No 247
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.00096 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+|.++.|+||||||||||.+.+.-
T Consensus 28 ~~Ge~~aliG~NGaGKSTLl~~i~G 52 (277)
T PRK13652 28 GRKQRIAVIGPNGAGKSTLFKHFNG 52 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999999479999999966
No 248
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0011 Score=44.06 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||+|+|||||.+.+...
T Consensus 25 i~~Gei~~liGpNGaGKSTLlk~i~Gl 51 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989979999999998199999999759
No 249
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.86 E-value=0.0015 Score=43.18 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=24.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 97299998889999899999999748980599
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
+..+|.|-|||||||+|+++.|.+.. +|.+.
T Consensus 3 ~~iIIaIDGpagSGKST~ak~lA~~L-~~~yl 33 (225)
T PRK00023 3 KAPVIAIDGPAGSGKGTVAKILAKKL-GFHYL 33 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-CCCEE
T ss_conf 89789965898678789999999993-98876
No 250
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0011 Score=44.04 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+|.++.|+||||||||||.+.|..
T Consensus 35 ~~Ge~~~liG~NGaGKSTLl~~l~g 59 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7998999999999809999999956
No 251
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.00099 Score=44.28 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+|-+++|.||||+||+||.+.+.-
T Consensus 28 ~~Ge~~~llGpsG~GKTTllr~iaG 52 (358)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAG 52 (358)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999986369999999976
No 252
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.85 E-value=0.001 Score=44.17 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-+++|.||||+||+||.+.+.-
T Consensus 29 ~~GE~~~llGpSG~GKTTlLr~iaG 53 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9998999999997459999999977
No 253
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.85 E-value=0.0011 Score=43.88 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+||||+||+||.+.+..
T Consensus 25 ~~Gei~~iiG~nGaGKSTLlk~i~G 49 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4997999988999989999999964
No 254
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.85 E-value=0.0012 Score=43.82 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99998889999899999999748980599
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
+|.|.|||||||+|+++.|.+.. +|.+.
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l-~~~~l 28 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYL 28 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCEEE
T ss_conf 98886899789899999999990-99077
No 255
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0011 Score=44.07 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+||||||||||.+.|..
T Consensus 30 I~~GE~v~IiG~nGsGKSTL~k~l~G 55 (304)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNA 55 (304)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 85998999987999859999999966
No 256
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.00091 Score=44.53 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|-++.|+||||||||||.+.|..-
T Consensus 30 i~~GE~v~iiG~nGsGKSTLl~~l~GL 56 (287)
T PRK13637 30 IEDGEFVALIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 879989999999993999999999739
No 257
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.84 E-value=0.0012 Score=43.77 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+|.++.|+||+|+|||||.+.|.-
T Consensus 25 ~~Ge~~~l~G~NGaGKSTLl~~l~G 49 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7998999999999859999999976
No 258
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.001 Score=44.22 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||||||||||.+.|..-
T Consensus 30 i~~Ge~~aiiG~sGsGKSTL~~~l~Gl 56 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889989999999996899999999638
No 259
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0011 Score=43.93 Aligned_cols=49 Identities=35% Similarity=0.499 Sum_probs=31.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--4687522237999866
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNE 73 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~ 73 (222)
++|..+.|+||||+||+||.+.|+...+ |..|+ .+|++..-.+..++.+
T Consensus 26 ~~Ge~i~ivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~~~~~~~~~~ 76 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD------------PTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHH
T ss_conf 5998999999999839999999976775------------89748999999988599899863
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.84 E-value=0.0012 Score=43.64 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|..+.|+||||+||+||.+.|+...
T Consensus 26 ~~Ge~~aivG~sGsGKSTLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 699999999999875999999998617
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.83 E-value=0.0012 Score=43.77 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||+|||||||.+.+..
T Consensus 20 v~~Ge~v~iiGpNGaGKSTLlk~i~G 45 (245)
T PRK03695 20 VRAGEILHLVGPNGAGKSTLLARMAG 45 (245)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 95998999997899419999999846
No 262
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.83 E-value=0.0011 Score=43.88 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=21.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+|||||||+||.+.|.-
T Consensus 33 ~~Gei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred ECCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 0881999998999519999999857
No 263
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.83 E-value=0.0013 Score=43.55 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=34.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i 75 (222)
++|..+.|+||||+||+||.+.|+...+ |..|+ .||+|-.-.+.+.+.+.+
T Consensus 45 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~------------p~~G~I~idg~di~~~~~~~lr~~i 97 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMVD------------IFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC------------CCCCEEEECCEEHHHCCHHHHHHHE
T ss_conf 7999999999999819999999960566------------7888899998996879999997505
No 264
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0011 Score=43.89 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=21.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-++.|.||||+||||+.+.+.-
T Consensus 29 ~~Gef~tlLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4886899989988888999999967
No 265
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=96.82 E-value=0.00082 Score=44.80 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=39.2
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC--CCCCCCCCCHHH
Q ss_conf 347972999988899998999999997489805998211079899854--687522237999
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV--DGKDYYFLSLSR 70 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~--~G~dY~Fvs~~~ 70 (222)
..+|--.|.|+|++.|||+||.++|+...-......+.|||-+=.|-. ++..+.|++-.-
T Consensus 4 ~~~ksG~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpG 65 (296)
T PRK00089 4 EKFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPG 65 (296)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 89837999999899988899999996896176149599872838999997997999998998
No 266
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0012 Score=43.87 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+||||||||||.+.|.-
T Consensus 29 ~~Ge~~aiiG~NGsGKSTLl~~l~G 53 (273)
T PRK13647 29 PEGSKTAILGPNGAGKSTLLLHLNG 53 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999999759999999966
No 267
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0011 Score=44.12 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.+..
T Consensus 34 i~~Ge~~aIiG~nGsGKSTL~~~l~G 59 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999999579999999965
No 268
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0011 Score=44.07 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+||||||||||.+.|..
T Consensus 34 ~~Ge~vaivG~nGsGKSTLlk~l~G 58 (273)
T PRK13632 34 NEGEYVAILGHNGSGKSTISKILTG 58 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 4998999999999869999999973
No 269
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.82 E-value=0.003 Score=41.24 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=62.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCCC--CHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 999888999989999999974898059982110798998546875--2223--799986653055244545604573341
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYFL--SLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~Fv--s~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
|+|+|+.||||+|+.+.|.+.. ++.+.= |-.-.. +..|.. =.|- ..+.|.+.... .+. . .
T Consensus 2 I~LiG~~G~GKstigk~la~~l-~~~fiD--~D~~Ie--~~~g~si~eif~~~Ge~~FR~~E~~--~l~-----~-~--- 65 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-GLPFVD--LDELIE--QRAGMSIPEIFAEEGEEGFRELERE--VLL-----L-L--- 65 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEE--CCHHHH--HHHCCCHHHHHHHCCHHHHHHHHHH--HHH-----H-H---
T ss_conf 8998899998899999999997-989796--859999--9949999999987493878999999--999-----9-8---
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHH
Q ss_conf 3211223221012203014523445553126741578986213279999999852011---2112899999999999999
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK---NQEDKEKVQLRLQNAYSEI 170 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~---~~d~~e~i~~Rl~~a~~E~ 170 (222)
...-..+++.|--++++ ++....|++ ...+||+..| .+.+.+|+.....+ ...+.+.+..-+. +..-
T Consensus 66 -~~~~~~VIs~GGG~v~~--~~~~~~l~~----~~~vI~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~l~~l~~--~R~~ 135 (154)
T cd00464 66 -LTKENAVIATGGGAVLR--EENRRLLLE----NGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLE--EREP 135 (154)
T ss_pred -HCCCCEEEECCCCCCCC--HHHHHHHHH----CCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HHHH
T ss_conf -56898599738973368--999999995----7908999579-999999960799999888999999999999--9999
Q ss_pred HHHHHCCEEEECCC
Q ss_conf 87641897999498
Q gi|255764507|r 171 KKWEFYDYVLINDD 184 (222)
Q Consensus 171 ~~~~~fD~vIvNdd 184 (222)
-|.+..|++|..++
T Consensus 136 ~Y~~~Ad~~i~~~~ 149 (154)
T cd00464 136 LYREVADLTIDTDE 149 (154)
T ss_pred HHHHHCCEEEECCC
T ss_conf 99987999997989
No 270
>PRK13542 consensus
Probab=96.81 E-value=0.002 Score=42.27 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|.++.|+||+|+||+||.+.|....
T Consensus 42 ~~Gei~~liGpNGaGKTTLlk~l~Gll 68 (224)
T PRK13542 42 APGDLLQVMGPNGSGKTSLLRVLSGLM 68 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 599799999999999999999995797
No 271
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0012 Score=43.71 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.|..
T Consensus 25 i~~Ge~vaiiG~nGsGKSTL~~~l~G 50 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 84899999999999809999999970
No 272
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.81 E-value=0.001 Score=44.27 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=42.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCH
Q ss_conf 79729999888999989999999974898059982110798998--546875222379
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSL 68 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~ 68 (222)
+.|.-|+|+||+-|||+||.++|+..+--+...+|=|||-.=.. +.+|.-+.|++-
T Consensus 214 ~~G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DT 271 (445)
T PRK05291 214 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDT 271 (445)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEEC
T ss_conf 3598699889998768999999857874673189997404022368999989999989
No 273
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.80 E-value=0.003 Score=41.22 Aligned_cols=94 Identities=26% Similarity=0.382 Sum_probs=47.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 99998889999899999999748980599821107989985468752223799986653055244545604573341321
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
-|+++||+|+||+-|++.|.+. -+..|++.--|.---.|= -|.| |..==.+-+.+++.=+|-++ +|-.| .+
T Consensus 111 NILliGPTG~GKTlla~tLAk~-l~vPF~iaDAT~lTEaGY-VGeD---VE~ii~~Llq~Ad~dve~Ae-~GIV~---ID 181 (411)
T PRK05342 111 NILLIGPTGSGKTLLAQTLARI-LNVPFAIADATTLTEAGY-VGED---VENILLKLLQAADYDVEKAQ-RGIVY---ID 181 (411)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HCCCEEEEEECEECCCCC-CCCC---HHHHHHHHHHHCCCCHHHHH-CCEEE---EE
T ss_conf 3899899997788999999998-699989986120012674-5607---99999999998288899883-68288---85
Q ss_pred HHHHHHHCCCCEE--ECCCHHHHHH
Q ss_conf 1223221012203--0145234455
Q gi|255764507|r 97 PIEETISKGKDML--FDIDWQGAQN 119 (222)
Q Consensus 97 ~i~~~l~~g~~~i--ldid~qG~~~ 119 (222)
+|+++...+...- =|+.-+|+++
T Consensus 182 EIDKIarks~~~s~trDVSgEGVQq 206 (411)
T PRK05342 182 EIDKIARKSENPSITRDVSGEGVQQ 206 (411)
T ss_pred EHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 0234542478888877765124899
No 274
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0012 Score=43.78 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-.+.|+||||||||||.+.|..
T Consensus 28 ~~GE~vaivG~nGsGKSTL~~~l~G 52 (276)
T PRK13650 28 KQGEWLSIIGHNGSGKSTTVRLIDG 52 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999999879999999973
No 275
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0012 Score=43.67 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.|..
T Consensus 25 I~~Ge~vaiiG~nGsGKSTLl~~l~G 50 (275)
T PRK13639 25 AEEGEMIAILGPNGAGKSTLFLHFNG 50 (275)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98998999999999649999999973
No 276
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.80 E-value=0.0014 Score=43.42 Aligned_cols=28 Identities=36% Similarity=0.530 Sum_probs=23.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|.++.|+||+|+|||||.+.+....
T Consensus 27 i~~Gei~~LiGpNGaGKSTLlk~I~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8799799999899988999999996688
No 277
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.80 E-value=0.0016 Score=42.87 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|..+.|+||||+||+||.+.|+...
T Consensus 25 ~~Ge~v~i~G~sGsGKSTLl~~l~Gl~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 899999999589998899999986987
No 278
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.001 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|+||||||||||++.|..
T Consensus 31 ~~Ge~~~iiG~nGsGKSTLl~~l~G 55 (286)
T PRK13641 31 EDGSFVALIGHTGSGKSTLMQHFNA 55 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 6999999999998399999999965
No 279
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0012 Score=43.82 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.|-++.|+||||||||||.+.+.-
T Consensus 22 ~ge~~~iiGpSGsGKSTll~~i~G 45 (214)
T cd03297 22 NEEVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 997999999997359999999984
No 280
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.79 E-value=0.0013 Score=43.47 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.+|.++.|+||+|+||+||.+.|.-..
T Consensus 35 ~~Ge~~~l~GpNGaGKTTLlr~l~Gl~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 189899999999987999999997697
No 281
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0012 Score=43.65 Aligned_cols=24 Identities=50% Similarity=0.740 Sum_probs=21.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 797299998889999899999999
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
++|-+++|+|||||||+||.+.|-
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~ln 51 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLN 51 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 798689998788886899999986
No 282
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0012 Score=43.87 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|.||||+||+||.+.|.-
T Consensus 42 I~~GE~~~llGpsGsGKSTllr~i~G 67 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99998999999998489999999976
No 283
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0011 Score=44.07 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
..+|.++.|+||+|||||||.+.+...
T Consensus 30 I~~Ge~~~iiGpNGaGKSTLlk~i~Gl 56 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 859979999999883999999999749
No 284
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.78 E-value=0.0014 Score=43.34 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.+|.++.|+||||+||+||.+.+....
T Consensus 23 ~~Ge~~~liG~nGsGKTTLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699799999899988999999995798
No 285
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.78 E-value=0.0014 Score=43.31 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||+||||+||.+.+.-.
T Consensus 23 v~~Gei~~liG~nGaGKSTLl~~i~Gl 49 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 889989999999998599999999779
No 286
>PRK10908 cell division protein FtsE; Provisional
Probab=96.78 E-value=0.0012 Score=43.76 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-++.|+||||+|||||.+.+.-
T Consensus 26 ~~Ge~~~liG~nGsGKSTLl~~i~G 50 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 6998999999998079999999965
No 287
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.77 E-value=0.015 Score=36.73 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=50.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH---HHHCCEEE-EEEECCCCCEE
Q ss_conf 999988899998999999997489805998211079899854687522237999866---53055244-54560457334
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE---LKKANAFI-EKAEVHGNFYG 92 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~---~i~~~~Fl-E~~~~~g~~YG 92 (222)
=+++.||+|+|||||++.+.+....--...+.|+ +|+.= + ++-++. ....+..+ ---|+|-.- -
T Consensus 39 s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~--------~gv~d--i-r~ii~~a~~~~~~~~tilfiDEIHRfn-K 106 (417)
T PRK13342 39 SMILWGPPGTGKTTLARIIAGATDAEFEALSAVT--------SGVKD--L-REVIEEAKQSRLGRRTILFIDEIHRFN-K 106 (417)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC--------CCHHH--H-HHHHHHHHHHHCCCCEEEEEECHHHCC-H
T ss_conf 5998896999899999999998689889961410--------38899--9-999999886314896599997820058-8
Q ss_pred EECCHHHHHHHCCCCEEECCCHHH-HHHHHHCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 132112232210122030145234-45553126741578986213279999999
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDIDWQG-AQNLHKQMGSNVLSFFILPPTMQELCSRL 145 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid~qG-~~~l~~~~~~~~~~IFI~pps~e~L~~RL 145 (222)
..-+.+-..+++|.++++-...+- .-.+....-..+.++-+.|.+.+.+..-|
T Consensus 107 ~QQD~LLp~vE~g~iiLIgATTENP~f~in~aLlSRc~vf~l~~L~~~di~~iL 160 (417)
T PRK13342 107 AQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDLEQLL 160 (417)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHHHHHHHEECCCCCHHHHHHHH
T ss_conf 999999875112656999741579225348989856570020589999999999
No 288
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.77 E-value=0.0014 Score=43.38 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHH
Q ss_conf 4797299998889999899999999748980599821107989985--468752223799
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLS 69 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~ 69 (222)
.++|.++.|+||+|+|||||.+.+.-..+ |..|+ .+|.|-...+..
T Consensus 23 v~~Gei~~liGpNGaGKSTL~~~i~Gl~~------------p~~G~I~~~G~~i~~~~~~ 70 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP------------VKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCEEEEECCEECCCCCHH
T ss_conf 99997999999999409999999977999------------9954999999999999989
No 289
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.053 Score=33.23 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999988899998999999997
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~ 37 (222)
-++++||+|+||.+++..+.+
T Consensus 30 A~Lf~Gp~G~GK~~~A~~~A~ 50 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 565578999889999999999
No 290
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=96.77 E-value=0.0014 Score=43.28 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||+|||||||.+.+.-
T Consensus 26 i~~Gei~~liGpNGaGKSTLl~~i~G 51 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 83997999988999869999999967
No 291
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.77 E-value=0.00044 Score=46.54 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=37.6
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC--CCCCCCCCCHHHH
Q ss_conf 988899998999999997489805998211079899854--6875222379998
Q gi|255764507|r 20 ISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV--DGKDYYFLSLSRF 71 (222)
Q Consensus 20 l~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~--~G~dY~Fvs~~~F 71 (222)
|+|++.|||+||.++|+.......-..|.|||.+-.+.. +|..+.|++-.-|
T Consensus 2 ivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~ 55 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGI 55 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCC
T ss_conf 048999889999999958875354079993566789999999988999857875
No 292
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.0078 Score=38.56 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=80.5
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEE---EECCH
Q ss_conf 888999989999999974898059982110798998546875222379998665305524454560457334---13211
Q gi|255764507|r 21 SSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYG---TLRDP 97 (222)
Q Consensus 21 ~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YG---t~~~~ 97 (222)
+|.||+||+|+...|.+.. +..| +||-|.| +++..++|- +|.=|- ....++ .-.++
T Consensus 1 MGVsG~GKStvg~~lA~~l-g~~f-------------idGDdlH--p~aNi~KM~-~GiPL~----DdDR~pWL~~l~~~ 59 (161)
T COG3265 1 MGVSGSGKSTVGSALAERL-GAKF-------------IDGDDLH--PPANIEKMS-AGIPLN----DDDRWPWLEALGDA 59 (161)
T ss_pred CCCCCCCHHHHHHHHHHHC-CCCE-------------ECCCCCC--CHHHHHHHH-CCCCCC----CCHHHHHHHHHHHH
T ss_conf 9877657779999999980-9823-------------3356569--988999872-799898----41124799999999
Q ss_pred HHHHHHCCCCEEECCCH--HHHH-HHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22322101220301452--3445-55312674157898621327999999985201121128999999999999998764
Q gi|255764507|r 98 IEETISKGKDMLFDIDW--QGAQ-NLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWE 174 (222)
Q Consensus 98 i~~~l~~g~~~ildid~--qG~~-~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~ 174 (222)
..+....|+.+|+-+.. ...+ .||.. ..++.+||+.. +++.+.+|+..|.-.-+. ...+..-++ .-|.....
T Consensus 60 ~~~~~~~~~~~vi~CSALKr~YRD~LR~~-~~~~~Fv~L~g-~~~~i~~Rm~~R~gHFM~-~~ll~SQfa--~LE~P~~d 134 (161)
T COG3265 60 AASLAQKNKHVVIACSALKRSYRDLLREA-NPGLRFVYLDG-DFDLILERMKARKGHFMP-ASLLDSQFA--TLEEPGAD 134 (161)
T ss_pred HHHHHCCCCCEEEECHHHHHHHHHHHHCC-CCCEEEEEECC-CHHHHHHHHHHCCCCCCC-HHHHHHHHH--HHCCCCCC
T ss_conf 99864279816996278878899998545-99738999638-899999998760567788-899998999--83589999
Q ss_pred HCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 18979994--988999999999999
Q gi|255764507|r 175 FYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 175 ~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
. |.+.+. ..+++.+++....+.
T Consensus 135 e-~vi~idi~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 135 E-DVLTIDIDQPPEEVVAQALAWLK 158 (161)
T ss_pred C-CEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8-87986489998999999999986
No 293
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.75 E-value=0.002 Score=42.38 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEEECCCCC
Q ss_conf 4797299998889999899999999748980599821107989985468752223799986653055-244545604573
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKAN-AFIEKAEVHGNF 90 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~-~FlE~~~~~g~~ 90 (222)
+|||.+|-++|.||||||||++.|.+........ -.+++-+.+...+..+ .|-.... .-|.
T Consensus 1 ~~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~-----------------~~~LDGD~lR~~l~~~lgfs~~dR-~~n~ 62 (175)
T PRK00889 1 MQRGVTVWFTGLSGAGKTTISHALAEKLRARGYP-----------------VEVLDGDIVRTNLSKGLGFSKEDR-DTNI 62 (175)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-----------------EEEECCHHHHHHHCCCCCCCHHHH-HHHH
T ss_conf 9988899988989999999999999999986996-----------------799776888875367889898999-9999
Q ss_pred EEEECCHHH-HHHHCCCCEEECC-CH-HHHHH-HHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 341321122-3221012203014-52-34455-53126741578986213279999999852011211289999999999
Q gi|255764507|r 91 YGTLRDPIE-ETISKGKDMLFDI-DW-QGAQN-LHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNA 166 (222)
Q Consensus 91 YGt~~~~i~-~~l~~g~~~ildi-d~-qG~~~-l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a 166 (222)
.- ...+- ....+|.+||+.. .| ...+. .|+.++ +.+-|||.+| ++++++|= ..-+-.+..
T Consensus 63 ~r--~~~la~~l~~~g~~vIvs~isp~~~~R~~~r~~~~-~~~EIyv~~~-l~~~~~RD----------~KgLY~ka~-- 126 (175)
T PRK00889 63 RR--IGFVAHLLTRHGVIVLVSAISPYRETREEVRGTIG-NFVEVFVNAP-LEVCEQRD----------VKGLYAKAR-- 126 (175)
T ss_pred HH--HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCC-CCEEEEECCC-HHHHHHCC----------HHHHHHHHH--
T ss_conf 99--99999999818986888504799999999998578-7669984288-89998807----------054778976--
Q ss_pred HHHHH--------H--HHHCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 99998--------7--64189799949--88999999999999
Q gi|255764507|r 167 YSEIK--------K--WEFYDYVLIND--DLENSLSILKSVIE 197 (222)
Q Consensus 167 ~~E~~--------~--~~~fD~vIvNd--dle~a~~~L~~iI~ 197 (222)
..++. | ...-|.+|.++ +++++++++...|.
T Consensus 127 ~g~i~n~~Gid~~yE~P~~pdl~IdT~~~si~~~~~~Ii~~L~ 169 (175)
T PRK00889 127 AGEIKHFTGIDDPYEPPLNPEVECRTDLESLEESVAKVLQKLE 169 (175)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 4877884005689999999806987999999999999999999
No 294
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0017 Score=42.81 Aligned_cols=93 Identities=25% Similarity=0.414 Sum_probs=48.3
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC-C-EEEEEEEEECCCCCCCCCCC--CCCCC-CHHHHHHHHHCCE---
Q ss_conf 048347972999988899998999999997489-8-05998211079899854687--52223-7999866530552---
Q gi|255764507|r 8 PLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQ-N-FEMSISVTTRVRRPNEVDGK--DYYFL-SLSRFNELKKANA--- 79 (222)
Q Consensus 8 ~~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~-~-~~~~v~~TTR~~R~gE~~G~--dY~Fv-s~~~F~~~i~~~~--- 79 (222)
.+....+|.++||+||+||||++|.+-..+.-. . +++++-=. ..+.|+-|. .|.=- --.=.+.|.++|.
T Consensus 343 ~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv---rDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NP 419 (782)
T COG0466 343 KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV---RDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP 419 (782)
T ss_pred HHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCC---CCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 86146788579997899887011899999995897799954765---427775355312335687289999998677687
Q ss_pred -EE--EEEECCCCCEEEECCHHHHHHH
Q ss_conf -44--5456045733413211223221
Q gi|255764507|r 80 -FI--EKAEVHGNFYGTLRDPIEETIS 103 (222)
Q Consensus 80 -Fl--E~~~~~g~~YGt~~~~i~~~l~ 103 (222)
|+ |--.....+.|-+.+++-++++
T Consensus 420 v~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 420 VFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred EEEEECHHHCCCCCCCCHHHHHHHHCC
T ss_conf 478640333167777886888886269
No 295
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=96.73 E-value=0.0013 Score=43.47 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=14.4
Q ss_pred CEEEEEECCCCCCHHHHHHHH
Q ss_conf 729999888999989999999
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHL 35 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L 35 (222)
|.+.||.|+|||||+||++..
T Consensus 665 G~~t~iTGVSGSGKSTLind~ 685 (956)
T TIGR00630 665 GLFTCITGVSGSGKSTLINDT 685 (956)
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 717999744587457779999
No 296
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.73 E-value=0.0014 Score=43.24 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+|-+++|.||||+||+||.+.+.-
T Consensus 28 ~~Ge~~~llGpSG~GKtTlLr~iaG 52 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8999999999995359999999976
No 297
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0016 Score=43.01 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||+|||||||.+.|..
T Consensus 24 i~~Gei~~liGpNGaGKSTLlk~l~G 49 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 83897999999999809999999966
No 298
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0016 Score=42.92 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+||+|||||||.+.+..
T Consensus 28 i~~Gei~~liG~NGaGKSTLl~~i~G 53 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 86997999987999759999999967
No 299
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0016 Score=42.87 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|-++.|+|||||||+||.+.+.-..
T Consensus 28 v~~Gei~~liGpnGaGKSTL~~~i~Gl~ 55 (255)
T PRK11300 28 VREQEVVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8999799999899964999999996798
No 300
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0016 Score=42.95 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||+|||||||.+.+..
T Consensus 29 I~~Ge~~aiiG~NGaGKSTLl~~i~G 54 (285)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNG 54 (285)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 87998999999999809999999965
No 301
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.003 Score=41.25 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.+.|-.+||.||||+||+||.+.|...+
T Consensus 34 V~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 34 VNAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 6375079966898876889999998514
No 302
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.71 E-value=0.0017 Score=42.82 Aligned_cols=51 Identities=31% Similarity=0.367 Sum_probs=33.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985--468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i 75 (222)
.+|.+++|.||.||||+||.+.|..-. +|..|+ .+|.+-+=.+..++-+.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~~~l------------~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL------------KPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCCCHHHCCHHHHHHHE
T ss_conf 599799998998889999999986567------------88887799999724546988875618
No 303
>PRK13544 consensus
Probab=96.71 E-value=0.0017 Score=42.77 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|.++.|+||+|||||||.+.|....
T Consensus 24 i~~Gei~~l~G~NGsGKSTLl~~i~Gl~ 51 (208)
T PRK13544 24 AKQNSLTLVIGNNGSGKTSLLRLLAGLI 51 (208)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8299499999999998999999995880
No 304
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.71 E-value=0.0013 Score=43.52 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=38.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHH
Q ss_conf 9999888999989999999974898059982110798998--546875222379998
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRF 71 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F 71 (222)
.|+|+|++-|||+||.++|....+.. ...+-|||.+..| +.+|..+.|++-.-|
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~v-~~~p~TTr~~~~~~~~~~~~~~~liDTpGi 57 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGL 57 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEE-CCCCCCCCCCEEEEEEECCCEEEEECCCCC
T ss_conf 79998899988999999995898602-375872357436899983727687248865
No 305
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.71 E-value=0.0016 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+-+.+|+||||||||||.+.+..
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHHHH
T ss_conf 088899998999999999999863
No 306
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0017 Score=42.83 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|-++.|+|||||||+||.+.+.-.
T Consensus 23 i~~Gei~~iiGpnGaGKSTl~~~i~Gl 49 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889989999999997399999999759
No 307
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.69 E-value=0.0023 Score=41.94 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCC
Q ss_conf 47972999988899998999999997489805998211079899
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRP 55 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~ 55 (222)
.++|..++|+|..|+||++++++|++..-.=...+..+|+++..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~ 79 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR 79 (296)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHH
T ss_conf 36861589743777768899999970267342104668870156
No 308
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.69 E-value=0.0015 Score=43.08 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||+|+||+||.+.|...
T Consensus 25 I~~GEi~gLIGPNGAGKSTLLk~I~Gl 51 (409)
T PRK09536 25 VREGHLVGVVGPNGAGKTTLLRAMNGL 51 (409)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889989999999872799999999668
No 309
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.69 E-value=0.0015 Score=43.10 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||||||||||++.|.--
T Consensus 30 i~~Ge~~aiiG~nGsGKSTLl~~l~Gl 56 (280)
T PRK13649 30 ILDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 879989999959998699999999669
No 310
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.69 E-value=0.0015 Score=43.19 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||++.+.-
T Consensus 29 I~~Ge~vaiiG~nGsGKSTLl~~l~G 54 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 85998999999999479999999974
No 311
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.68 E-value=0.0018 Score=42.58 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=23.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCC
Q ss_conf 7972999988899998999999997-489
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK-CDQ 40 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~-~~~ 40 (222)
.+|-++.|+||||+||+|+.+.++. ..|
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 68608998678888789999999841367
No 312
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.68 E-value=0.0019 Score=42.52 Aligned_cols=26 Identities=35% Similarity=0.601 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|.++.|+||+|+|||||.+.|...
T Consensus 26 ~~Gei~~l~G~NGaGKTTLlk~i~Gl 51 (206)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLLAGL 51 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69949999899999899999999588
No 313
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.68 E-value=0.0022 Score=42.03 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=26.9
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC-CEE
Q ss_conf 48347972999988899998999999997489-805
Q gi|255764507|r 9 LTVNHRGMMLIISSPSGVGKSTIARHLLKCDQ-NFE 43 (222)
Q Consensus 9 ~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~ 43 (222)
+..+.+|.++|++||+|+||++|.+-..+... .|.
T Consensus 343 ~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~ 378 (784)
T PRK10787 343 RVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 624677877996469987724699999998589869
No 314
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.67 E-value=0.0037 Score=40.61 Aligned_cols=52 Identities=27% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748-980599821107989985468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i 75 (222)
+.|..+.|+|+|||||+||.|-|...+ |.-+.+ ..||.|-.=++...+.+.+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I-----------~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI-----------LLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-----------EECCEEHHHCCHHHHHHHE
T ss_conf 7998899987999988999999836788888559-----------9998727866999998654
No 315
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.67 E-value=0.0018 Score=42.56 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|+||+||||+||.+.+...
T Consensus 25 i~~Gei~~llG~NGaGKSTLl~~i~Gl 51 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 849959999989997399999999669
No 316
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0019 Score=42.48 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|.++.|+||||+||+||.+.|.-..
T Consensus 22 i~~Ge~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8799799998788999899999995884
No 317
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0042 Score=40.24 Aligned_cols=57 Identities=21% Similarity=0.172 Sum_probs=37.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHH
Q ss_conf 479729999888999989999999974898059982110798998--54687522237999866530
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELKK 76 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i~ 76 (222)
.++|-++-|+|+||+||+|+.+.++.-.+.-..+ -.| ..+|.|..-.+..+..+...
T Consensus 30 i~~GEilgivGeSGsGKSTl~~~ilgll~~~~~~--------~~g~i~~~g~dl~~~~~~~~~~~~g 88 (327)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRV--------MAEKLEFNGQDLQRISEKERRNLVG 88 (327)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE--------EEEEEEECCEECCCCCHHHHHHHHC
T ss_conf 8899999999999878999999997488989976--------5427999999977499999998637
No 318
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0041 Score=40.31 Aligned_cols=29 Identities=38% Similarity=0.430 Sum_probs=24.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 47972999988899998999999997489
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
.++|-++.|+|+|||||||+++.|+.-.+
T Consensus 39 v~~GE~vaLvGeSGSGKSTl~~~l~gll~ 67 (623)
T PRK10261 39 LQRGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 88998999998999789999999977987
No 319
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.65 E-value=0.0019 Score=42.44 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=21.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 347972999988899998999999997
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
...++++|.++||+||||||.+-+|..
T Consensus 206 ~~~~~~vvalVGPTGVGKTTTiAKLAA 232 (412)
T PRK05703 206 ILEQGGVVALVGPTGVGKTTTLAKLAA 232 (412)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 545673699988888756769999999
No 320
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.65 E-value=0.064 Score=32.68 Aligned_cols=157 Identities=17% Similarity=0.308 Sum_probs=72.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEECC
Q ss_conf 99998889999899999999748980599821107989985468752223799986653055244545604573341321
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRD 96 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~ 96 (222)
+.||+|==|||||||.++|++...+...+|--- --||+ |+|-..+.. .....+| -.+|..-.+.+.
T Consensus 6 VtiltGFLGaGKTTlL~~lL~~~~~~riaVivN----EfGev-~iD~~li~~-------~~~~v~e--L~nGCiCCs~~~ 71 (317)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN----EFGEV-SVDDQLIGD-------RATQIKT--LTNGCICCSRSN 71 (317)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE----CCCCC-CCHHHHHHC-------CCCCEEE--ECCCCEEEEECC
T ss_conf 899830888899999999972778997899983----76145-332988735-------6532688--447736873052
Q ss_pred HHH----HHHHC---CC---CEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 122----32210---12---203014523445553126741578986213279999999852011211289999999999
Q gi|255764507|r 97 PIE----ETISK---GK---DMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNA 166 (222)
Q Consensus 97 ~i~----~~l~~---g~---~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a 166 (222)
++. ..++. |. +. +-|+..|+-. +....-.|... +.|.++..-.+.-..=|.......+...
T Consensus 72 dl~~~l~~l~~~~~~~~~~~D~-IiIEtsGlAd-----P~~I~~~~~~~---~~l~~~~~Ld~vVtvVDa~~~~~~l~~~ 142 (317)
T PRK11537 72 ELEDALLDLLDNLDRGNIQFDR-LVIECTGMAD-----PGPIIQTFFSH---EVLCQRYLLDGVIALVDAVHADEQMNQF 142 (317)
T ss_pred HHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCC-----HHHHHHHHHHH---HHHHHHEECCCEEEEEEHHHHHHHHHCC
T ss_conf 2899999999866435777547-9996257788-----39999998612---5656532036559998665557665303
Q ss_pred HHHHHHHHHCCEEEECC-CHHHHHHHHHHHH
Q ss_conf 99998764189799949-8899999999999
Q gi|255764507|r 167 YSEIKKWEFYDYVLIND-DLENSLSILKSVI 196 (222)
Q Consensus 167 ~~E~~~~~~fD~vIvNd-dle~a~~~L~~iI 196 (222)
.....+-.+.|.+|+|. |+-...+++...+
T Consensus 143 ~~~~~Qi~~AD~illnK~Dlv~~~~~l~~~l 173 (317)
T PRK11537 143 TIAQSQVGYADRILLTKTDVAGEAEKLRERL 173 (317)
T ss_pred HHHHHHHHHCCEEEEECCCCCCHHHHHHHHH
T ss_conf 4667666318689974200236599999999
No 321
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.64 E-value=0.0024 Score=41.81 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9729999888999989999999974898
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN 41 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~ 41 (222)
-|.+|++.||+|+||+||++-|.+.+.+
T Consensus 38 PP~vVavvGPpgvGKtTLiksLvk~ytk 65 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTK 65 (225)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969999898997788999999999854
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.63 E-value=0.0031 Score=41.12 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97299998889999899999999748
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.|+.+.|+||||+||+||.+.|...+
T Consensus 410 ~G~t~AlVG~SGsGKSTii~LL~RfY 435 (1467)
T PTZ00265 410 EGKTYAFVGESGCGKSTILKLIERLY 435 (1467)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89779986688875667999996326
No 323
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=96.61 E-value=0.069 Score=32.50 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=74.1
Q ss_pred CEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC--CCEEEEEEE-EECCCCCCCCCCCCCCCCCHHHHHHHH-HCCEE
Q ss_conf 30004834797299998889999899999999748--980599821-107989985468752223799986653-05524
Q gi|255764507|r 5 RLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCD--QNFEMSISV-TTRVRRPNEVDGKDYYFLSLSRFNELK-KANAF 80 (222)
Q Consensus 5 ~~~~~~~~~r~~iivl~GpsG~GK~tl~~~L~~~~--~~~~~~v~~-TTR~~R~gE~~G~dY~Fvs~~~F~~~i-~~~~F 80 (222)
.+||.. .+...|=|+||+||||+||..+|.... .+...+|-. ---.|+.| |- .-=++-.|+.+- +.+-|
T Consensus 21 ~~~~~~--g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sg---Ga--iLGDr~RM~~~~~~~~vf 93 (267)
T pfam03308 21 RLMPLT--GRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTG---GS--ILGDRTRMQRLAVDPGAF 93 (267)
T ss_pred HHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC---CC--CCCCHHHHHHHCCCCCEE
T ss_conf 987435--99559987689988799999999999996898689999789998888---63--001077776505899858
Q ss_pred EEEEECCCCCEEEECCHHHHH---HHCCCCEEECCCHHHHHHHHHC--CCCCHHHHHHHCCCHHHHHH
Q ss_conf 454560457334132112232---2101220301452344555312--67415789862132799999
Q gi|255764507|r 81 IEKAEVHGNFYGTLRDPIEET---ISKGKDMLFDIDWQGAQNLHKQ--MGSNVLSFFILPPTMQELCS 143 (222)
Q Consensus 81 lE~~~~~g~~YGt~~~~i~~~---l~~g~~~ildid~qG~~~l~~~--~~~~~~~IFI~pps~e~L~~ 143 (222)
+----..|++=|.+..+-+.+ -+.|.++|+ ++.-|+-+---. .--+.+.+-+.|-+-+++..
T Consensus 94 iRs~~srg~lGGls~~t~~~i~lleaaGfD~Ii-vETVGVGQsE~~v~~~aD~~llv~~Pg~GDeiQ~ 160 (267)
T pfam03308 94 IRSSPSRGALGGLSRATREAILLLDAAGFDVII-IETVGVGQSEVDIANMADTFVLVTIPGGGDDLQG 160 (267)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE-EECCCCCCCCHHHHHHCCEEEEEECCCCCHHHHH
T ss_conf 864577888887147699999999977999999-9247777530355541576899955887608889
No 324
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.61 E-value=0.0021 Score=42.14 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|.||+|+||+||.+.|..
T Consensus 24 ~~ge~~~l~G~NGsGKTTl~~~l~G 48 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999998999849999999848
No 325
>TIGR02169 SMC_prok_A chromosome segregation protein SMC; InterPro: IPR011891 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases . All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression . This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by IPR011890 from INTERPRO. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent ..
Probab=96.60 E-value=0.0021 Score=42.26 Aligned_cols=30 Identities=37% Similarity=0.798 Sum_probs=22.9
Q ss_pred CCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8730004834797299998889999899999999
Q gi|255764507|r 3 RDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 3 ~~~~~~~~~~~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.++..|.. +| +.|||||.|||||-|.+.|+
T Consensus 16 kk~~Ipf~---~G-FtvIsGPNGSGKSNI~DaiL 45 (1202)
T TIGR02169 16 KKKVIPFL---KG-FTVISGPNGSGKSNIIDAIL 45 (1202)
T ss_pred CEEEEECC---CC-CEEEECCCCCCHHHHHHHHH
T ss_conf 71263168---88-84788888886455999999
No 326
>KOG0057 consensus
Probab=96.60 E-value=0.0038 Score=40.57 Aligned_cols=80 Identities=25% Similarity=0.310 Sum_probs=51.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH---CCEEEEEEE-CCCC
Q ss_conf 972999988899998999999997489805998211079899854687522237999866530---552445456-0457
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK---ANAFIEKAE-VHGN 89 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~---~~~FlE~~~-~~g~ 89 (222)
+|.=+.|+|+||+||+|+.+.|+..+++=+.+. +||+|-.=++.+.+.+.|. ++.-|-..+ .+.-
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~-----------IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI 445 (591)
T KOG0057 377 KGEKVAIVGSNGSGKSTILRLLLRFFDYSGSIL-----------IDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNI 445 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-----------ECCEEHHHHCHHHHHHHEEEECCCCCCCCHHHHHHH
T ss_conf 897898978999878899999999744688599-----------987337650757765221676776643006599886
Q ss_pred CEEEECCHHHHHHHC
Q ss_conf 334132112232210
Q gi|255764507|r 90 FYGTLRDPIEETISK 104 (222)
Q Consensus 90 ~YGt~~~~i~~~l~~ 104 (222)
.||-+..+-+.+++.
T Consensus 446 ~YGn~sas~eeV~e~ 460 (591)
T KOG0057 446 KYGNPSASDEEVVEA 460 (591)
T ss_pred HCCCCCCCHHHHHHH
T ss_conf 328987688999999
No 327
>COG0645 Predicted kinase [General function prediction only]
Probab=96.59 E-value=0.014 Score=36.91 Aligned_cols=110 Identities=23% Similarity=0.344 Sum_probs=59.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEE----------EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEE
Q ss_conf 7299998889999899999999748980599----------821107989985468752223799986653055244545
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMS----------ISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKA 84 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~----------v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~ 84 (222)
+.++++.|=||+||+|++..|-+..+...+- +|--||.| .|.-+-=++...+.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~-----~g~ys~~~~~~vy~------------ 63 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGP-----AGLYSPAATAAVYD------------ 63 (170)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCC-----CCCCCHHHHHHHHH------------
T ss_conf 9479972588865868878988534866874178998723886101488-----78876788999999------------
Q ss_pred ECCCCCEEEECCHHHHHHHCCCCEEECCCHH------HHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 6045733413211223221012203014523------44555312674157898621327999999985201
Q gi|255764507|r 85 EVHGNFYGTLRDPIEETISKGKDMLFDIDWQ------GAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 85 ~~~g~~YGt~~~~i~~~l~~g~~~ildid~q------G~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
..|+- -..++..|..||+|-..- -+..+-+.....+..|....| .+++..|+.+|.-
T Consensus 64 ----~l~~~----A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~rl~aR~~ 126 (170)
T COG0645 64 ----ELLGR----AELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRGRLAARKG 126 (170)
T ss_pred ----HHHHH----HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCC
T ss_conf ----99988----999996799189844337888899999987503885488875882-9999989998179
No 328
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.59 E-value=0.0022 Score=42.01 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
..+|.+++|.||+||||+||.+.+.--
T Consensus 23 i~~G~i~~i~G~NGsGKSTLlk~i~Gl 49 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 779979999999998199999999679
No 329
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.59 E-value=0.0022 Score=42.12 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-++.|+||+|||||||.+.+..
T Consensus 48 ~~GEivgllG~NGaGKSTLlk~I~G 72 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGG 72 (264)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 5998999998998619999999967
No 330
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=96.59 E-value=0.0032 Score=40.99 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=22.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 7299998889999899999999748980599
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
|+-|+++||+||||+.|+++|.+-- +..|+
T Consensus 50 pkNILmIGPTGvGKTeIARrLAkl~-~aPFv 79 (442)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFI 79 (442)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEE
T ss_conf 4316887888866789999999984-89858
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.58 E-value=0.0024 Score=41.83 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=48.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEE----------------------------E----EEEEE-----------
Q ss_conf 7972999988899998999999997489805----------------------------9----98211-----------
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFE----------------------------M----SISVT----------- 49 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~----------------------------~----~v~~T----------- 49 (222)
+.|.-+-|+||||+||+||...|...++ +. . ....+
T Consensus 1193 ~~GqkVaiVGrSGsGKSTii~lL~Rfyd-i~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 (1467)
T PTZ00265 1193 DSKKTTAIVGETGSGKSTFMNLLLRFYD-LKNDHHIIFKNDMTGESSKEQDQQGDEENNLGLKNANEFSNSKEGADAEDS 1271 (1467)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7998899989999839999999997763-220223221222222222110012221111111222111233333332224
Q ss_pred ECCCCCC--CCCCCCCCCCCHHHHHHH---HHCCEEEEEEECCCCC-EEEECCHHHHHHH
Q ss_conf 0798998--546875222379998665---3055244545604573-3413211223221
Q gi|255764507|r 50 TRVRRPN--EVDGKDYYFLSLSRFNEL---KKANAFIEKAEVHGNF-YGTLRDPIEETIS 103 (222)
Q Consensus 50 TR~~R~g--E~~G~dY~Fvs~~~F~~~---i~~~~FlE~~~~~g~~-YGt~~~~i~~~l~ 103 (222)
|..|..| .+||+|-.=++-...++. +.+.-+|--+....|. ||..-.+.+++++
T Consensus 1272 ~l~p~sG~I~IDG~DI~~i~L~~LRs~iaiVpQeP~LF~GTIReNI~yg~~d~t~eeI~~ 1331 (1467)
T PTZ00265 1272 TLFKNNGEILLDDIDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATLEDVKR 1331 (1467)
T ss_pred CCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCCEECCCHHHHHCCCCCCCCHHHHHH
T ss_conf 568888369989987230799999857857898980227488998088999999999999
No 332
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=96.57 E-value=0.0029 Score=41.28 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=61.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEEEE
Q ss_conf 999988899998999999997489--805998211079899854687522237999866530552445456045733413
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQ--NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~--~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 94 (222)
||||+|..+|||+|.++.|.+... +....+ +..-.... +. .+|.--.. ....-|..
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~~~~~v~v-i~d~~~~~-~~--~~y~~s~~------------------Ek~~R~~l 58 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEEKGYDVIV-ISDESLGI-ES--DDYKDSKK------------------EKFLRGSL 58 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE-ECCCCCCC-CC--CCCCCCHH------------------HHHHHHHH
T ss_conf 97985799996889999999999975993899-78001267-53--10001047------------------89999999
Q ss_pred CCHHHHHHHCCCCEEECCC--HHHHHH----HHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 2112232210122030145--234455----531267415789862132799999998520112112899999999
Q gi|255764507|r 95 RDPIEETISKGKDMLFDID--WQGAQN----LHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQ 164 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid--~qG~~~----l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~ 164 (222)
+++|+..++.+.+||+|=- .+|.+. +-+.......+||+..| .+.-.++-..|+... =+++.+..-..
T Consensus 59 ~s~v~r~Ls~~~iVIlD~~NYiKG~RYEL~C~Ak~~~t~~c~v~~~~p-~e~~~~~N~~r~~~~-y~~e~~~~L~~ 132 (266)
T pfam08433 59 RSAVKRDLSKNTIVIVDSLNYIKGFRYELYCIAKEAKTTYCVVYCKAP-LDTCLKWNEERGEPS-WPDELLDQLYQ 132 (266)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHCCCCCCC-CCHHHHHHHHH
T ss_conf 999987516688899548740456899999999863888489996899-899998621477778-98799999999
No 333
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.57 E-value=0.0019 Score=42.41 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=23.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 7299998889999899999999748980599
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
|+=|+.+||.|+|||.|+++|.+-. +..|+
T Consensus 47 PKNILMiGpTGVGKTEIARRlAKL~-~aPFi 76 (463)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA-NAPFI 76 (463)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCCE
T ss_conf 7430432788985447999999984-48914
No 334
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.57 E-value=0.0015 Score=43.05 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||||||||.+.|.-
T Consensus 23 v~~GEi~~liG~nGaGKSTll~~l~G 48 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred ECCCCEEEEECCCCCCCCHHHHHHCC
T ss_conf 85996999988899992637787669
No 335
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.56 E-value=0.0023 Score=41.94 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|.++.|.||+|||||||.+.|..
T Consensus 45 ~~Gei~gLlGpNGaGKSTllk~l~G 69 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 4895999999998309999999964
No 336
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.56 E-value=0.0025 Score=41.75 Aligned_cols=27 Identities=22% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|-++.|.||+|||||||.+.+.-.
T Consensus 23 v~~Gei~~llGpNGAGKSTll~~i~Gl 49 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 899959999999996199999999779
No 337
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0027 Score=41.51 Aligned_cols=155 Identities=16% Similarity=0.224 Sum_probs=77.4
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECC
Q ss_conf 83479729999888999989999999974898059982110--7989985468752223799986653055244545604
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT--RVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVH 87 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT--R~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~ 87 (222)
.+.++|.+|-++|.|||||+||+++|-+.-..-++.+ |-- -.-|.| =+.|+=|-.++.-++...-+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~-y~LDGDnvR~g--L~~dLgFs~edR~eniRRva--------- 85 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHV-YLLDGDNVRHG--LNRDLGFSREDRIENIRRVA--------- 85 (197)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE-EEECCHHHHHC--CCCCCCCCHHHHHHHHHHHH---------
T ss_conf 7279985999646888878799999999999759758-98557467650--05788978678999999999---------
Q ss_pred CCCEEEECCHHHHH-HHCCCCEEEC-CCHHHH--HHHHHCCCC-CHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 57334132112232-2101220301-452344--555312674-157898621327999999985201121128999999
Q gi|255764507|r 88 GNFYGTLRDPIEET-ISKGKDMLFD-IDWQGA--QNLHKQMGS-NVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLR 162 (222)
Q Consensus 88 g~~YGt~~~~i~~~-l~~g~~~ild-id~qG~--~~l~~~~~~-~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~R 162 (222)
.|-+. .++|.++|.. |.|-.. ...|+..+. +.+-|||..| +++.++| |++-+-++
T Consensus 86 ---------evAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce~R----------DpKGLYkK 145 (197)
T COG0529 86 ---------EVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCERR----------DPKGLYKK 145 (197)
T ss_pred ---------HHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHC----------CCHHHHHH
T ss_conf ---------999999878908999751730999999999727686289995798-9999861----------82578999
Q ss_pred HHHHHHHHHHH---------HHCCEEEEC---CCHHHHHHHHHHHHHH
Q ss_conf 99999999876---------418979994---9889999999999999
Q gi|255764507|r 163 LQNAYSEIKKW---------EFYDYVLIN---DDLENSLSILKSVIEV 198 (222)
Q Consensus 163 l~~a~~E~~~~---------~~fD~vIvN---ddle~a~~~L~~iI~~ 198 (222)
-. ..|+.+. ..-.-++++ .+++++++++...+..
T Consensus 146 Ar--~GeI~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 146 AR--AGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred HH--CCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97--59877875778888899998267506657899999999999985
No 338
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0024 Score=41.78 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 7972999988899998999999997489
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
++|-++.|+||||+|||||++.|..-.|
T Consensus 29 ~~Ge~~~lvG~nGsGKSTL~~~l~Gl~p 56 (513)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (513)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8997999989999729999999956788
No 339
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.55 E-value=0.0024 Score=41.78 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
..|.++.|.||||+||+||.+.+.-
T Consensus 22 ~~g~i~~l~GpsGaGKTTLl~~iaG 46 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINLISG 46 (352)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999999629999999976
No 340
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0024 Score=41.80 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=19.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 79729999888999989999999
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHL 35 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L 35 (222)
..|-++|++|||||||+|+.+..
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 59728999878997578799999
No 341
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.53 E-value=0.0026 Score=41.63 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|-++.|+||||+|||||.+.|.-.
T Consensus 21 i~~Gei~~liG~nGsGKSTL~~~l~Gl 47 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989969999899998199999999569
No 342
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.53 E-value=0.0028 Score=41.45 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|.++.|.||+||||+|+.+.|...
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~Gl 54 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 28959999899999899999999679
No 343
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.53 E-value=0.0084 Score=38.34 Aligned_cols=54 Identities=37% Similarity=0.442 Sum_probs=38.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHHC
Q ss_conf 4797299998889999899999999748980599821107989985--46875222379998665305
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKKA 77 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~~ 77 (222)
.+||.+..|+||||+||+||.+.+.-. .+|..|| ++|.|+-=.|+++-.++.+.
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gl------------l~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGL------------LRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC------------CCCCCCEEEECCCCHHCCCHHHHHHHHHH
T ss_conf 507818999889886899999998565------------78988759984764110498899999843
No 344
>KOG1970 consensus
Probab=96.52 E-value=0.002 Score=42.26 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=42.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC-CC-EEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 4797299998889999899999999748-98-059982110798998546875222379998665305524454560457
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD-QN-FEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGN 89 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~-~~-~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~ 89 (222)
.-+..|.+|+||||+||+|-.+.|.+.. +. ....-|--++.|- + .+-+-.|.+..-+..+-.-..|+|.+.-+|.
T Consensus 107 ~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~-~--~h~~t~~~~~~~~s~L~~fesFler~~kyg~ 183 (634)
T KOG1970 107 KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE-N--LHNETSFLMFPYQSQLAVFESFLLRATKYGS 183 (634)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC-C--CCCCCHHCCCCHHHHHHHHHHHHHHHHHHCH
T ss_conf 667607998579888713199999986480212304776656655-5--4554400133036678999989999876231
Q ss_pred CEEEE
Q ss_conf 33413
Q gi|255764507|r 90 FYGTL 94 (222)
Q Consensus 90 ~YGt~ 94 (222)
+|+..
T Consensus 184 l~~~g 188 (634)
T KOG1970 184 LQMSG 188 (634)
T ss_pred HHHCC
T ss_conf 65313
No 345
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=96.52 E-value=0.0015 Score=43.20 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=17.2
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 9729999888999989999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIA 32 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~ 32 (222)
|-.+|||+|.|||||+||+
T Consensus 21 r~~lVViTG~SGSGKSSLA 39 (956)
T TIGR00630 21 RDKLVVITGLSGSGKSSLA 39 (956)
T ss_pred CCCEEEEECCCCCCCHHHH
T ss_conf 9866999745688615456
No 346
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=96.52 E-value=0.0016 Score=42.97 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=73.8
Q ss_pred EECCCCCCHHHHHHHHHHHC-CCEEEE----EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCC-CEEE
Q ss_conf 98889999899999999748-980599----82110798998546875222379998665305524454560457-3341
Q gi|255764507|r 20 ISSPSGVGKSTIARHLLKCD-QNFEMS----ISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGN-FYGT 93 (222)
Q Consensus 20 l~GpsG~GK~tl~~~L~~~~-~~~~~~----v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~-~YGt 93 (222)
|.||||||||||...|.-.. |+.+.+ ..-|.+||.-=.++ --|=|=+=|=.|-- +-.-.+|- .-|+
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~vPp~~R~in---~vFQsYALFPHMTv-----~~NvAfgLk~~k~ 72 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTEVPPHLRSIN---MVFQSYALFPHMTV-----EENVAFGLKMRKV 72 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC---CEEECCCCCCCCCH-----HHHCCCCCCCCCC
T ss_conf 978888747999999834587775507756710121572206146---05735435621227-----7645444351788
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHH-------------HCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 3211223221012203014523445553-------------126741578986213279999999852011211289999
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLH-------------KQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQ 160 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~-------------~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~ 160 (222)
++++|..-+.+--. ++.+.--|.++.. ++.=++|. |.+.=.++..|-++|+++.
T Consensus 73 ~~~ei~~RV~e~L~-~V~L~~~a~rkp~qLSGGQ~QRvAlARa~v~kPk-~LLlDEpLsALD~kLR~~M----------- 139 (331)
T TIGR01187 73 PRAEIKPRVKEALR-LVQLEEFAKRKPHQLSGGQQQRVALARALVFKPK-ILLLDEPLSALDKKLRDQM----------- 139 (331)
T ss_pred CHHHHHHHHHHHHH-HCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHH-----------
T ss_conf 85668899999974-2130011046731046852899999999860895-6771177226438989988-----------
Q ss_pred HHHHHHHHHHHHHH---HCCEEEECCCHHHHHH
Q ss_conf 99999999998764---1897999498899999
Q gi|255764507|r 161 LRLQNAYSEIKKWE---FYDYVLINDDLENSLS 190 (222)
Q Consensus 161 ~Rl~~a~~E~~~~~---~fD~vIvNddle~a~~ 190 (222)
+.|++.-+ =-.+|.|-+|-++|..
T Consensus 140 ------Q~ELk~~~~~LGiT~v~VTHDQ~EA~T 166 (331)
T TIGR01187 140 ------QLELKTLQEQLGITFVFVTHDQEEALT 166 (331)
T ss_pred ------HHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf ------999999987268289997018489875
No 347
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.00046 Score=46.43 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=23.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|.++.|.||+|+||+||.+.++...
T Consensus 23 v~~Gei~gllG~NGaGKTTll~~i~Gl~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8799599999899984999999996002
No 348
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.52 E-value=0.0028 Score=41.43 Aligned_cols=49 Identities=31% Similarity=0.346 Sum_probs=34.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--468752223799986
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFN 72 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~ 72 (222)
.++|.++.|+||+|+||+||.+.+.-.. +|..|+ .+|.+..|.+..+..
T Consensus 23 i~~Gei~~lvG~nGaGKSTl~~~i~Gl~------------~p~~G~i~i~G~~i~~~~~~~~~ 73 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY------------KPDSGEILVDGKEVSFASPRDAR 73 (163)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHHHH
T ss_conf 8799899999889989999999995776------------89857899999999999999999
No 349
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.51 E-value=0.0039 Score=40.47 Aligned_cols=31 Identities=29% Similarity=0.530 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 97299998889999899999999748980599
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
-|.+|.|-|||||||+|+++.|.+.. +|.+.
T Consensus 3 ~~iiIAIDGPagsGKSTvak~lA~~L-g~~yL 33 (714)
T PRK09518 3 GMIIVAIDGPAGVGKSSVSRALAQYF-GYAYL 33 (714)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-CCEEE
T ss_conf 98899977898658999999999994-99188
No 350
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.51 E-value=0.002 Score=42.27 Aligned_cols=51 Identities=31% Similarity=0.402 Sum_probs=34.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC--CCCCCCCCCHHHHHHHH
Q ss_conf 7972999988899998999999997489805998211079899854--68752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV--DGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~--~G~dY~Fvs~~~F~~~i 75 (222)
++|.++.|+|+||+||+||.+.|..-. +|-.|++ +|+|-.-.++++.....
T Consensus 39 ~~GE~lgiVGeSGsGKSTL~~~l~gl~------------~p~~G~I~~~G~dl~~~~~~~~~~~r 91 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE------------TPTGGELYYQGQDLLKADPEAQKLLR 91 (327)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHHHHHHH
T ss_conf 899999999998319999999995699------------98863799899955779999999975
No 351
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.49 E-value=0.0028 Score=41.44 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=19.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-++.|+||||+|||||++.|.-
T Consensus 28 ~~Gei~~liG~nGaGKSTL~~~l~G 52 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTLMKVLTG 52 (501)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8996999989999829999999957
No 352
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.48 E-value=0.0026 Score=41.61 Aligned_cols=55 Identities=25% Similarity=0.241 Sum_probs=35.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 4797299998889999899999999748980599821107989985--468752223799986653
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i 75 (222)
.++|.++.|+|+||+||+||.+.++.-.+.-. .| .|+ .+|.|..=.+..++....
T Consensus 39 i~~GEilgivGeSGsGKSTl~~~i~gll~~~~----~~-----sG~I~~~G~~i~~~~~~~~~~~r 95 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLLAANG----RI-----GGSATFNGREILNLPEKELNKLR 95 (330)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC----CE-----EEEEEECCEECCCCCHHHHHHHH
T ss_conf 88998999986898779999999976888888----33-----58999999986658999999863
No 353
>KOG0061 consensus
Probab=96.48 E-value=0.003 Score=41.19 Aligned_cols=41 Identities=32% Similarity=0.406 Sum_probs=28.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC-C--EEEEEEEEECCC
Q ss_conf 7972999988899998999999997489-8--059982110798
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQ-N--FEMSISVTTRVR 53 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~-~--~~~~v~~TTR~~ 53 (222)
+.|.+..|.|||||||+||.+.|....+ + ..=.+..--|++
T Consensus 54 ~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~ 97 (613)
T KOG0061 54 KPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR 97 (613)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCC
T ss_conf 67868999768887799999999577887887615999898227
No 354
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0028 Score=41.45 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.+| ++.|.||+|||||||.+.+.-.
T Consensus 24 ~~G-i~gllGpNGAGKSTll~~i~Gl 48 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHCC
T ss_conf 897-5999999982399999999759
No 355
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.47 E-value=0.003 Score=41.17 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||+|+|||||.+.+.-
T Consensus 25 v~~Gei~~liGpNGaGKSTLl~~i~G 50 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 88998999998999759999999967
No 356
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0033 Score=40.98 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|.++.|+||+||||+||.+.+.-.
T Consensus 24 ~~Gei~gl~G~NGaGKSTLl~~i~Gl 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79939999878997999999999768
No 357
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.45 E-value=0.003 Score=41.20 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++.|+||||+||+||.+.|..
T Consensus 27 i~~Ge~~~lvG~nGaGKSTL~~~l~G 52 (501)
T PRK11288 27 VRAGQVHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 88981999989999819999999847
No 358
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=96.45 E-value=0.0088 Score=38.20 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=44.0
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHHC
Q ss_conf 347972999988899998999999997489-80599821107989985--46875222379998665305
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQ-NFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKKA 77 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~~ 77 (222)
.-|||.++-|+|.|||||+.-+..++.--| +...+- || .+|+++-=..+++++..+..
T Consensus 8 ~lk~G~~~aLvG~SGSGKS~tc~A~Lg~L~~~~~~~~---------G~i~l~G~~~~~~p~kemr~~Rg~ 68 (239)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS---------GEILLDGRPLLALPKKEMRSIRGR 68 (239)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE---------EEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 0332437888748787589999998503586522310---------266771723145873689988666
No 359
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.45 E-value=0.0029 Score=41.32 Aligned_cols=50 Identities=32% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHH
Q ss_conf 79729999888999989999999974898059982110798998--546875222379998665
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~ 74 (222)
++|-++.|+|||||||+||.+.|.--. +|-.| ..+|+|-.-.+.++..+.
T Consensus 32 ~~Ge~v~i~G~nGsGKSTll~~l~gl~------------~p~~G~v~~~G~~~~~~~~~~~~~~ 83 (648)
T PRK10535 32 YAGEMVAIVGASGSGKSTLMNILGCLD------------KPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHHH
T ss_conf 899899999999962999999995699------------9996699999999885998999998
No 360
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.44 E-value=0.0048 Score=39.89 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=22.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 299998889999899999999748980599
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
.+|.|-|||||||+|+++.|.+.. +|.+.
T Consensus 35 iIIAIDGPAGSGKSTVAk~lA~~L-G~~yL 63 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRL-GAQCL 63 (863)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-CCEEE
T ss_conf 899986898678899999999982-99588
No 361
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.43 E-value=0.0035 Score=40.79 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC---CCCCCCCCCH
Q ss_conf 972-999988899998999999997489805998211079899854---6875222379
Q gi|255764507|r 14 RGM-MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV---DGKDYYFLSL 68 (222)
Q Consensus 14 r~~-iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~---~G~dY~Fvs~ 68 (222)
.|. .|.|+|++.|||+||.++|..... .....+-|||.|..+.+ +|..+.|++-
T Consensus 39 ~g~p~VaivG~PNvGKSTLlN~L~g~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT 96 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDT 96 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 5998799988999989999999948996-341567764576366899569977999836
No 362
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.41 E-value=0.0035 Score=40.81 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+||+|+||+||.+.|.-
T Consensus 23 i~~Gei~gliG~nGaGKSTL~~~i~G 48 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 88998999998999739999999967
No 363
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0034 Score=40.83 Aligned_cols=53 Identities=30% Similarity=0.307 Sum_probs=35.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 797299998889999899999999748980599821107989985468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i 75 (222)
+.|..++|+||||+||+||.+.|+...+- |+=..+ +||++--=++.+.+.+.+
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~-------~~G~I~---vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAP-------TQGEIR---VNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC-------CCCEEE---ECCCCCCCCCHHHHHHHE
T ss_conf 48967999889999789999998475777-------784488---899310006877888672
No 364
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.40 E-value=0.0019 Score=42.53 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 9998889999899999999748980599821107989985468
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDG 60 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G 60 (222)
|.|+|++.||||||.++|....+. ...-+.|||.|-+|-..-
T Consensus 3 V~LVG~PN~GKSTLln~LT~a~~~-v~~ypfTT~~pi~g~~~~ 44 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEY 44 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCEEEEEEE
T ss_conf 999999999999999999789954-369897875747779998
No 365
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.40 E-value=0.0028 Score=41.44 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=79.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE-----CC-CCCCCCCCCCCCCCCHHHHHH--HHHCCEEEEEEECCCC
Q ss_conf 999888999989999999974898059982110-----79-899854687522237999866--5305524454560457
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTT-----RV-RRPNEVDGKDYYFLSLSRFNE--LKKANAFIEKAEVHGN 89 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT-----R~-~R~gE~~G~dY~Fvs~~~F~~--~i~~~~FlE~~~~~g~ 89 (222)
+||.||+||||.|.+++|.+.+. ++|.+ |. ...+-. +. .+.++ -+++|+++-=.-+
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~g-----l~HISTGDllR~~~~~~T~-------LG-~~~k~y~y~~~G~LVPD~~v--- 65 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLG-----LPHISTGDLLRAAVKAGTP-------LG-KKAKEYNYMDKGELVPDEIV--- 65 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHCCH-------HH-HHHHCCCCCCCCCCCCHHHH---
T ss_conf 46755989876679999998608-----8502025899999870797-------78-98732672003775778999---
Q ss_pred CEEEECCHHHHHHHC-----CCCEEECCCHHH---HHHHH---HCCCCCH-HHHHHHCCCHHHHHHHHHHH---------
Q ss_conf 334132112232210-----122030145234---45553---1267415-78986213279999999852---------
Q gi|255764507|r 90 FYGTLRDPIEETISK-----GKDMLFDIDWQG---AQNLH---KQMGSNV-LSFFILPPTMQELCSRLSLR--------- 148 (222)
Q Consensus 90 ~YGt~~~~i~~~l~~-----g~~~ildid~qG---~~~l~---~~~~~~~-~~IFI~pps~e~L~~RL~~R--------- 148 (222)
-++=++-+...-+. .+-.|||==|-- |..|- ...+..+ .+|.+..|..|+|.+|+..|
T Consensus 66 -~~lv~~rl~~~~~~~~~~~~~GfILDGfPRT~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~gR~~cp~cG~~ 144 (232)
T TIGR01351 66 -NQLVKERLQQNPDCVSLKSENGFILDGFPRTLSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITGRRICPSCGRV 144 (232)
T ss_pred -HHHHHHHHHCCCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCE
T ss_conf -9999999745600011010686266388887899999999998618984178885358799999977327330677855
Q ss_pred ---------C----------------CCCCHHHHHHHHHHHHHHHHHH----HHHH----CC-----E-EEECCCHHHHH
Q ss_conf ---------0----------------1121128999999999999998----7641----89-----7-99949889999
Q gi|255764507|r 149 ---------A----------------KKNQEDKEKVQLRLQNAYSEIK----KWEF----YD-----Y-VLINDDLENSL 189 (222)
Q Consensus 149 ---------~----------------~~~~d~~e~i~~Rl~~a~~E~~----~~~~----fD-----~-vIvNddle~a~ 189 (222)
. .+.-|++|.+..||+.+..+.. |+.. ++ . |=-|..+++-+
T Consensus 145 Yh~~f~pPk~~gG~~~cD~~~~~~l~qR~DD~~evv~~RL~~Y~~~t~Pli~yY~~~g~l~~f~~~y~~id~~~~~~~v~ 224 (232)
T TIGR01351 145 YHIKFNPPKVPGGENLCDDCGGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYRKKGILVTFEGIYQTIDGNGPIDEVW 224 (232)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCEEECCCCCCHHHHH
T ss_conf 61022788678767988644575027706998899999999988852008999984691365686322003788888899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|255764507|r 190 SILKSVI 196 (222)
Q Consensus 190 ~~L~~iI 196 (222)
.++..++
T Consensus 225 ~~~~~~l 231 (232)
T TIGR01351 225 KRILEAL 231 (232)
T ss_pred HHHHHHH
T ss_conf 9999972
No 366
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.39 E-value=0.0034 Score=40.86 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=46.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 97299998889999899999999748980599821107989985--4687522237999866530552445456045733
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNE--VDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE--~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
.|.=|-|+||||+|||||...|..- .+|+.|+ .||++-+=++..+-.+.| -+..-.=|.+
T Consensus 386 ~G~r~Ai~G~SG~GKsTLL~~L~G~------------l~P~~G~vtl~G~~~~~~~~~evrr~v------~~~aQ~aHlF 447 (566)
T TIGR02868 386 PGERVAILGPSGSGKSTLLATLAGL------------LDPLQGEVTLDGVPVSSLSEDEVRRRV------SVFAQDAHLF 447 (566)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH------------CCCCCCCEEECCCCHHHCCCCHHEHHE------EECCCCCCCC
T ss_conf 8860898668876578999999840------------289999178777324325731100000------3127886211
Q ss_pred EEECCHHHHHHHCCC
Q ss_conf 413211223221012
Q gi|255764507|r 92 GTLRDPIEETISKGK 106 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~ 106 (222)
.|+ |.+.+.=|+
T Consensus 448 ~tt---vr~NLrlar 459 (566)
T TIGR02868 448 DTT---VRENLRLAR 459 (566)
T ss_pred CCC---HHHHHHHCC
T ss_conf 054---787887318
No 367
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0036 Score=40.67 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=36.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEE--EECCC----CCCCC---CCCCCCC-CCHHHHHHH
Q ss_conf 47972999988899998999999997-48980599821--10798----99854---6875222-379998665
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISV--TTRVR----RPNEV---DGKDYYF-LSLSRFNEL 74 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~--TTR~~----R~gE~---~G~dY~F-vs~~~F~~~ 74 (222)
..+|.++.|+||.|+|||||.+.++. -.|.-+.+.-. -++.. |-|=+ ...|+-| +|-.+|-.|
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~ 100 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLL 100 (254)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHC
T ss_conf 74896899999988888999999967876774269983666333466776997576102676799679999860
No 368
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.38 E-value=0.0014 Score=43.38 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=29.7
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC
Q ss_conf 9888999989999999974898059982110798998546
Q gi|255764507|r 20 ISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD 59 (222)
Q Consensus 20 l~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~ 59 (222)
|+|+++||||||.++|...........+-|||.+..+..+
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~ 40 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWE 40 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEE
T ss_conf 9197998999999999589961016989986564589999
No 369
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.38 E-value=0.0084 Score=38.34 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998889999899999999748
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~ 39 (222)
|+|.||+|+||+++++.+.+..
T Consensus 2 vll~Gp~G~GKT~la~~la~~l 23 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAAL 23 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHC
T ss_conf 8999899756999999999980
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.37 E-value=0.003 Score=41.19 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 79729999888999989999999
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHL 35 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L 35 (222)
++|.++.|+||||||||||+-.+
T Consensus 19 ~~Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH
T ss_conf 59989999878996098983616
No 371
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=96.36 E-value=0.0045 Score=40.09 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-HCC--CEEEEEEE-EECCCC--CC-CCCCCCCCCCCHHHHHHHHHCCEEEEEE
Q ss_conf 47972999988899998999999997-489--80599821-107989--98-5468752223799986653055244545
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK-CDQ--NFEMSISV-TTRVRR--PN-EVDGKDYYFLSLSRFNELKKANAFIEKA 84 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~-~~~--~~~~~v~~-TTR~~R--~g-E~~G~dY~Fvs~~~F~~~i~~~~FlE~~ 84 (222)
.++|-||=+-||.||||||+++.|.- -.| +-+.+-=| .+|.|+ .= ..=|+-.--+|-++= +-. -|+=
T Consensus 18 V~~G~vfGfLGPNGAGKTTti~mLtTll~P~sG~A~V~GYDvvreP~kl~VRr~IG~v~Q~~s~D~~--LTg----~ENl 91 (343)
T TIGR01188 18 VREGEVFGFLGPNGAGKTTTIRMLTTLLKPTSGTARVAGYDVVREPRKLKVRRRIGIVPQYASVDED--LTG----RENL 91 (343)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHCCCCEEEEEECCCCCCCCC--CCH----HHHH
T ss_conf 3062489976879985133563410255799876899832102363040321132044685555645--774----7544
Q ss_pred ECCCCCEEEECCHHHHHHH
Q ss_conf 6045733413211223221
Q gi|255764507|r 85 EVHGNFYGTLRDPIEETIS 103 (222)
Q Consensus 85 ~~~g~~YGt~~~~i~~~l~ 103 (222)
..+|.+||.|++..++-++
T Consensus 92 ~m~g~LyGlp~~~~~~Ra~ 110 (343)
T TIGR01188 92 VMMGRLYGLPKKEAEERAE 110 (343)
T ss_pred HHHHHHCCCCHHHHHHHHH
T ss_conf 4533334896899998888
No 372
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.35 E-value=0.0028 Score=41.39 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=17.5
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 9729999888999989999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIA 32 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~ 32 (222)
|++++|++|+|||||+||+
T Consensus 25 ~~klvViTGvSGSGKSSLA 43 (944)
T PRK00349 25 RDKLVVITGLSGSGKSSLA 43 (944)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9988999889888689999
No 373
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=96.35 E-value=0.0022 Score=42.03 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
+-|.|=.|+|.||||||||.+.|.++-
T Consensus 851 kPG~lTALMG~SGAGKTTLLn~La~R~ 877 (1466)
T TIGR00956 851 KPGTLTALMGASGAGKTTLLNVLAERV 877 (1466)
T ss_pred ECCEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 778576515788763578886443304
No 374
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0039 Score=40.45 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|.||+||||||+.+.+.-
T Consensus 23 v~~Gei~gllGpNGAGKSTll~~i~G 48 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88983999999998719999999976
No 375
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0055 Score=39.52 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=77.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE-EEECCCC-CCCCCCCCCCCCCHHHHHHHHHCCEEE-EE---EECCCC
Q ss_conf 29999888999989999999974898059982-1107989-985468752223799986653055244-54---560457
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMSIS-VTTRVRR-PNEVDGKDYYFLSLSRFNELKKANAFI-EK---AEVHGN 89 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~-~TTR~~R-~gE~~G~dY~Fvs~~~F~~~i~~~~Fl-E~---~~~~g~ 89 (222)
.+|.|-||||+||+|+++.|.+.. +|.+.-+ .+=|.-- ..=.+|.| +-+.+...++...-.+- .. ..++|.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~L-g~~yldTGamYRa~a~~~l~~~~~--~~d~~~~~~l~~~~~i~f~~~~~v~l~ge 81 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKL-GFHYLDTGAMYRAVALAALKHGVD--LDDEDALVALAKELDISFVNDDRVFLNGE 81 (222)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-CCCEECCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHCCCEECCCCEEEECCC
T ss_conf 499976887568478999999980-986664549999999999980899--75599999999858811046715887782
Q ss_pred CE--EEE-------------CCHHHH--------HHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 33--413-------------211223--------2210122030145234455531267415789862132799999998
Q gi|255764507|r 90 FY--GTL-------------RDPIEE--------TISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLS 146 (222)
Q Consensus 90 ~Y--Gt~-------------~~~i~~--------~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~ 146 (222)
-. .+. ...|+. ....+..||+| |-.-=-.-+++..+-||+.+...+.=++|+.
T Consensus 82 dvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~d----GRDiGTvV~PdA~lKiFLtAS~e~RA~RR~~ 157 (222)
T COG0283 82 DVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVAD----GRDIGTVVFPDAELKIFLTASPEERAERRYK 157 (222)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEE----CCCCCCEECCCCCEEEEEECCHHHHHHHHHH
T ss_conf 003665168999999999725999999999999998438988986----6876656778987578986888999999999
Q ss_pred HHCCCC-CHHHHHHHHHHHHH-HHHHH--HH---HHCCEEEEC-C--CHHHHHHHHHHHHH
Q ss_conf 520112-11289999999999-99998--76---418979994-9--88999999999999
Q gi|255764507|r 147 LRAKKN-QEDKEKVQLRLQNA-YSEIK--KW---EFYDYVLIN-D--DLENSLSILKSVIE 197 (222)
Q Consensus 147 ~R~~~~-~d~~e~i~~Rl~~a-~~E~~--~~---~~fD~vIvN-d--dle~a~~~L~~iI~ 197 (222)
.....+ .+.-+++...+..- ..+.. .. .--|.+++- . .+++.++++..++.
T Consensus 158 q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 158 QLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8774467203999999999862301137678886789748997898829999999999999
No 376
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.33 E-value=0.0043 Score=40.24 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|.++.|.||+|+||+||.+.+.-.
T Consensus 23 v~~Gei~gllG~NGaGKSTLl~~i~Gl 49 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 869819999999999999999999578
No 377
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0041 Score=40.36 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|.||+|+||+|+.+.|.-
T Consensus 28 V~~Gei~gllGpNGAGKTTli~~l~G 53 (304)
T PRK13537 28 VQPGECFGLLGPNGAGKTTTLKMLLG 53 (304)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 86995999999989729999999977
No 378
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.32 E-value=0.0068 Score=38.93 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=42.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC--------CCEEEEEEEEE-CCCCCCCCCCCC-CCCCCHHHHHHHHHC----
Q ss_conf 4797299998889999899999999748--------98059982110-798998546875-222379998665305----
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD--------QNFEMSISVTT-RVRRPNEVDGKD-YYFLSLSRFNELKKA---- 77 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~--------~~~~~~v~~TT-R~~R~gE~~G~d-Y~Fvs~~~F~~~i~~---- 77 (222)
-+.|.+|+|.|+=||||+|+.+.+++.. |-|..+-+|.. |.| .-..| |..-+.++++.+--.
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~----lyH~DlYRl~d~ee~~~lg~~e~~~ 97 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLP----LYHFDLYRLSDPEELDELGLDEYFD 97 (149)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEHHHCCCCCC----EEEEEEECCCCHHHHHHCCHHHHHC
T ss_conf 789988999778768859999999997499975249876101211379987----7998611258867756669889747
Q ss_pred ---CEEEEEEECC
Q ss_conf ---5244545604
Q gi|255764507|r 78 ---NAFIEKAEVH 87 (222)
Q Consensus 78 ---~~FlE~~~~~ 87 (222)
=-.+||++..
T Consensus 98 ~~gv~lIEW~e~~ 110 (149)
T COG0802 98 GDGICLIEWPERL 110 (149)
T ss_pred CCCEEEEECCCHH
T ss_conf 7848999874112
No 379
>KOG1191 consensus
Probab=96.32 E-value=0.0031 Score=41.15 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCC
Q ss_conf 3479729999888999989999999974898059982110798998--54687522237
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLS 67 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs 67 (222)
.-+.|.=|+|.||+.|||++|.+.|.+++--+..++|=|||-.=.- +++|+-.+-++
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~D 322 (531)
T KOG1191 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSD 322 (531)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEECCCEEEEEEE
T ss_conf 76357728997699877889998875077447678999641001227630875899973
No 380
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.31 E-value=0.0034 Score=40.90 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=22.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4797299998889999899999999
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
..||.++.|.||.|||||||...|-
T Consensus 15 ~~~G~~~aLlG~NGaGKsTLl~~Ln 39 (190)
T TIGR01166 15 VERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 2057168987289985789988743
No 381
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.31 E-value=0.0051 Score=39.71 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=52.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEEE-CCCCCE
Q ss_conf 97299998889999899999999748980599821107989985468752223799986653055-2445456-045733
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKAN-AFIEKAE-VHGNFY 91 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~-~FlE~~~-~~g~~Y 91 (222)
||.+|-|+|.|||||+||++.|.+........+-+ .||- ++.+....+ .|-.-.. -+...+
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~---------LDGD--------~~R~~l~~dlgys~~~R~~n~~r~ 63 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYV---------LDGD--------NVRHGLNKDLGFSEEDRTENIRRI 63 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE---------ECCH--------HHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899988989999999999999999975997799---------7688--------775012577798989999999999
Q ss_pred EEECCHHHH-HHHCCCCEEECC-CH-HHHHH-HHHCCCC-CHHHHHHHCCCHHHHHHH
Q ss_conf 413211223-221012203014-52-34455-5312674-157898621327999999
Q gi|255764507|r 92 GTLRDPIEE-TISKGKDMLFDI-DW-QGAQN-LHKQMGS-NVLSFFILPPTMQELCSR 144 (222)
Q Consensus 92 Gt~~~~i~~-~l~~g~~~ildi-d~-qG~~~-l~~~~~~-~~~~IFI~pps~e~L~~R 144 (222)
..+-. ..++|.+||+.. .| ...+. .|+..+. ..+-|||.+| ++++++|
T Consensus 64 ----~~lak~l~~~g~~VIvs~isp~~~~R~~~r~~~~~~~y~EIyv~~~-le~~~~R 116 (157)
T pfam01583 64 ----AEVAKLFADAGLIVITSFISPYRADRDMARELHEDGKFIEVFVDTP-LEVCEQR 116 (157)
T ss_pred ----HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHC
T ss_conf ----9999998428965887215789999999998647885799996386-7887751
No 382
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.31 E-value=0.0043 Score=40.21 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.++-|.||+|+||+|+.+.|.-
T Consensus 25 v~~Gei~gllGpNGAGKTTl~~~l~G 50 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 85981999999999819999999967
No 383
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.30 E-value=0.0052 Score=39.65 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99988899998999999997
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~ 37 (222)
.||+|.+|||||.|...|..
T Consensus 197 piLVGepGVGKTAIvEGLA~ 216 (852)
T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CCEECCCCCCHHHHHHHHHH
T ss_conf 72127999879999999999
No 384
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.30 E-value=0.0041 Score=40.34 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|-++.|.||+|||||||.+.+.--
T Consensus 46 ~~GeivgilG~NGaGKSTLl~~i~Gl 71 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 38989999979998199999999758
No 385
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.27 E-value=0.0061 Score=39.25 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99988899998999999997
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~ 37 (222)
.||+|.+|||||.|...|..
T Consensus 202 piLvGepGVGKTAIvEGLA~ 221 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CEEECCCCCCHHHHHHHHHH
T ss_conf 75878999889999999999
No 386
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.26 E-value=0.0037 Score=40.63 Aligned_cols=85 Identities=15% Similarity=0.344 Sum_probs=47.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE--EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHC-CEEEEEEECCCCCEEEE
Q ss_conf 999888999989999999974898059--982110798998546875222379998665305-52445456045733413
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEM--SISVTTRVRRPNEVDGKDYYFLSLSRFNELKKA-NAFIEKAEVHGNFYGTL 94 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~--~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~-~~FlE~~~~~g~~YGt~ 94 (222)
+.++|++|+||+||++.|....-.+.- +|.|-.+ .+|+- |+|+||-. ||
T Consensus 3 ~~f~G~~gCGKTTL~q~L~g~~~~YKKTQAvE~~~k---------------------~~IDTPGEY~enr~----~Y--- 54 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEIKYKKTQAVEYKDK---------------------EAIDTPGEYVENRR----YY--- 54 (144)
T ss_pred EEEEECCCCCHHHHHHHCCCCCCCEEEEEEEEECCC---------------------CCCCCCCCCCCCCC----HH---
T ss_conf 788715888744354311687321023344542588---------------------86559850015752----37---
Q ss_pred CCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 2112232210122030145234455531267415789862
Q gi|255764507|r 95 RDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFIL 134 (222)
Q Consensus 95 ~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~ 134 (222)
.++--.+..-.++++. +++..=...++.....+|.+
T Consensus 55 -~AL~vtaaDAd~i~lV---~~a~~~~~~f~PgF~~~f~k 90 (144)
T TIGR02528 55 -SALIVTAADADVIALV---QSATDEESRFSPGFASIFVK 90 (144)
T ss_pred -HHHHHHHHCCEEEEEE---ECCCCCCCCCCCCCCCCCCC
T ss_conf -8888887210236677---35776422378500023678
No 387
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0043 Score=40.18 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 97299998889999899999999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
+..+..|+||||+||+|+.+.|-
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 78069988898867888999987
No 388
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.0083 Score=38.36 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=21.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
-++|.+|.++||.||||+|-+-+|..
T Consensus 203 l~~g~VIaLVGvnGvGKTTTiAKLA~ 228 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 03690899989998978999999999
No 389
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.24 E-value=0.0062 Score=39.18 Aligned_cols=30 Identities=37% Similarity=0.614 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9729999888999989999999974898059
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEM 44 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~ 44 (222)
+.+|++|.||+|+||+|.++.|.+.. +|..
T Consensus 44 ~~~iLlLtGPaG~GKTTTI~lLAkeL-G~ei 73 (490)
T pfam03215 44 KQLILLLTGPSGCGKSTTVKVLSKEL-GIEI 73 (490)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-CCEE
T ss_conf 73189987989988999999999975-9689
No 390
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0051 Score=39.71 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=20.9
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7972-99998889999899999999748
Q gi|255764507|r 13 HRGM-MLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~-iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.||. .|++.|||||||+.|++.|.+..
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9873578866788656999999999996
No 391
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.21 E-value=0.0048 Score=39.90 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
++|-.+.|+||||+|||||.+.|.-
T Consensus 31 ~~Ge~vgLvG~NGaGKSTLlriLaG 55 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 6898999999999719999999847
No 392
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.21 E-value=0.0045 Score=40.07 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
+|-.+.|+||||+|||||.+.|..
T Consensus 28 ~Ge~vgLVG~NGsGKSTLl~iL~G 51 (632)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILSG 51 (632)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 998999999999879999999838
No 393
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.21 E-value=0.0041 Score=40.35 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=27.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECC
Q ss_conf 972999988899998999999997489805998211079
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRV 52 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~ 52 (222)
++.-+.++|.++|||+||.+.|+...--.....|.|||-
T Consensus 100 ~~~~v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr~ 138 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKG 138 (156)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEECC
T ss_conf 662899981478459899999748813777599980705
No 394
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.21 E-value=0.005 Score=39.77 Aligned_cols=26 Identities=42% Similarity=0.568 Sum_probs=22.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++-|.||+|+||+|+.+.|.-
T Consensus 30 v~~Gei~gllGpNGAGKSTli~~l~G 55 (306)
T PRK13536 30 VASGECFGLLGPNGAGKSTIARMILG 55 (306)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 85996999999989809999999967
No 395
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.20 E-value=0.0054 Score=39.58 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|-++.|.||+|||||||.+.+...
T Consensus 29 ~~Gei~gllG~NGaGKSTllk~i~Gl 54 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 59829999999998499999999779
No 396
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.17 E-value=0.006 Score=39.28 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97299998889999899999999748
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.+.-++|.||+|+||+++++.+.+..
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99808998999988659999999971
No 397
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.17 E-value=0.0058 Score=39.38 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9729999888999989999999974898
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN 41 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~ 41 (222)
.+..|+++||.||||+|+.+.|+...|.
T Consensus 138 ~~~~ilIsG~TGSGKTT~l~all~~i~~ 165 (283)
T pfam00437 138 ARGNILVSGGTGSGKTTLLYALLNEINT 165 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 1975999889999889999999984087
No 398
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.17 E-value=0.0051 Score=39.71 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|-.|.|+||+|+|||||.+.|+...
T Consensus 348 ~~Ge~iaivG~NGsGKSTLlk~l~G~~ 374 (556)
T PRK11819 348 PPGGIVGIIGPNGAGKSTLFKMITGQE 374 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 788247898898775889999983865
No 399
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.16 E-value=0.0038 Score=40.54 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=36.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC--CCCCCCCCCHHH
Q ss_conf 99988899998999999997489805998211079899854--687522237999
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV--DGKDYYFLSLSR 70 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~--~G~dY~Fvs~~~ 70 (222)
|.|+|++.|||+||.++|+.... .....|-|||-+..+.. +|..+.|++-.-
T Consensus 2 VaIvG~PNvGKSTLlN~L~g~~~-~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpG 55 (188)
T pfam02421 2 IALVGNPNVGKTTLFNALTGARQ-HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPG 55 (188)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCEEEEEEEECCEEEEEEECCC
T ss_conf 89988999899999999959996-5638999723335768752516799996888
No 400
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.16 E-value=0.0045 Score=40.08 Aligned_cols=48 Identities=29% Similarity=0.400 Sum_probs=36.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCC
Q ss_conf 9729999888999989999999974898059982110798998--54687
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGK 61 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~ 61 (222)
.|.=++|+|++.|||+||.+.|+..+--+..-++=|||--=+. ..+|+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~ 265 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI 265 (454)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCE
T ss_conf 58649998799886799999886678667428999741037899998988
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.16 E-value=0.0041 Score=40.37 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=17.1
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 9729999888999989999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIA 32 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~ 32 (222)
|.+++||+|+|||||+||+
T Consensus 960 rnkLvViTGvSGSGKSSLA 978 (1809)
T PRK00635 960 RNALTAITGPSASGKHSLV 978 (1809)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9866999789888689999
No 402
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.15 E-value=0.0024 Score=41.82 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9999888999989999999974898059982110798998546875222
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYF 65 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~F 65 (222)
+|+|+|.+-|||+||.++|......+....+-|||-...+...-.++.|
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~ 49 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGGREF 49 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCEEE
T ss_conf 9899999998789999998788617615989988773379999999079
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.15 E-value=0.0048 Score=39.89 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=21.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 347972999988899998999999997
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
...+|.++.++||.||||||-.-+|..
T Consensus 172 ~~~~ggV~alVGPTGVGKTTTiAKLAA 198 (404)
T PRK06995 172 LMERGGVFALVGPTGVGKTTTTAKLAA 198 (404)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 011475589866888763758999999
No 404
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.0054 Score=39.58 Aligned_cols=165 Identities=22% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 79729999888999989999999974-89805998211079899854687522237999866530552445456045733
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC-DQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~-~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
.+|-.+-|+||||+||+||.+.|+-- .|..+-+. .--.+.-+.- -++ .|-..+ .-++-+.|
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~-~~G~~~~~~~--------~~~-~~~~~V--------QmVFQDp~ 92 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL-LDGKPLAPKK--------RAK-AFYRPV--------QMVFQDPY 92 (252)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCCCCCCCC--------CCH-HHCCCE--------EEEECCCC
T ss_conf 48978999848989888999999565678886289-8884057665--------303-330450--------69951872
Q ss_pred EE--ECCHHHHHHHCCCCEE-ECCCHHHHHHHHHCCCCCHHHHHHHCC--CHHHHHHHHHHHCCCCC------H-----H
Q ss_conf 41--3211223221012203-014523445553126741578986213--27999999985201121------1-----2
Q gi|255764507|r 92 GT--LRDPIEETISKGKDML-FDIDWQGAQNLHKQMGSNVLSFFILPP--TMQELCSRLSLRAKKNQ------E-----D 155 (222)
Q Consensus 92 Gt--~~~~i~~~l~~g~~~i-ldid~qG~~~l~~~~~~~~~~IFI~pp--s~e~L~~RL~~R~~~~~------d-----~ 155 (222)
++ ++.+|..++.+.-..- ++-..+-+..+.+..+..+-+-+-.|. |.-++.+--..|+.... | -
T Consensus 93 ~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaL 172 (252)
T COG1124 93 SSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172 (252)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHHHHCCCCCEEEECCCHHHH
T ss_conf 24684101989974243037753789999999998499989985394212816899999999863688879953823441
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHH
Q ss_conf 8999999999999998764189799949889999999999
Q gi|255764507|r 156 KEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILKSV 195 (222)
Q Consensus 156 ~e~i~~Rl~~a~~E~~~~~~fD~vIvNddle~a~~~L~~i 195 (222)
+-.++.-+-+...++...-..-|++|.+|+.....-...|
T Consensus 173 D~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 173 DVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRI 212 (252)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHE
T ss_conf 5889999999999999861945999967299999885352
No 405
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0047 Score=39.98 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=17.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7972999988899998999999997
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+|-.|.|+||+|+|||||.+.|+.
T Consensus 336 ~~GeriaIvG~NGsGKSTLlk~L~G 360 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 3784799974787138899999728
No 406
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.12 E-value=0.0052 Score=39.69 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=24.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC-CC
Q ss_conf 4797299998889999899999999748-98
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD-QN 41 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~-~~ 41 (222)
..+|-.|.|+||+|+|||||.+.|+... |.
T Consensus 342 i~~Ge~ialvG~NGsGKSTLlk~l~G~l~p~ 372 (632)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372 (632)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 5788779998898842779999860666899
No 407
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.12 E-value=0.0058 Score=39.35 Aligned_cols=92 Identities=25% Similarity=0.342 Sum_probs=62.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCE
Q ss_conf 9729999888999989999999974898059982110798998--54687522237999866530552445456045733
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFY 91 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~Y 91 (222)
.+.=|+|+|-+-+||+||.++|+.+.--+...++=|||-+=.. |.+|..|.|++-.-+....+-.+=+|+ |
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~-------~ 249 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEK-------Y 249 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEE-------E
T ss_conf 750899992787870588877506825984599986220331258998818999987787746641242688-------7
Q ss_pred EEECCHHHHHHHCCCCEEECCCH
Q ss_conf 41321122322101220301452
Q gi|255764507|r 92 GTLRDPIEETISKGKDMLFDIDW 114 (222)
Q Consensus 92 Gt~~~~i~~~l~~g~~~ildid~ 114 (222)
...+. + .+++.-.+|++.+|.
T Consensus 250 Sv~rt-~-~aI~~a~vvllviDa 270 (444)
T COG1160 250 SVART-L-KAIERADVVLLVIDA 270 (444)
T ss_pred EEHHH-H-HHHHHCCEEEEEEEC
T ss_conf 50546-7-678656889999988
No 408
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.005 Score=39.79 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.+|-.+.|+||+|+|||||.+.|...
T Consensus 25 ~~Ge~vgLVG~NGsGKSTLlklL~G~ 50 (638)
T PRK10636 25 NPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 89989999889998899999998089
No 409
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.11 E-value=0.0056 Score=39.49 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7299998889999899999999
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.-||+|+||.|||||||.++++
T Consensus 30 ~gLFlI~G~TGAGKSTIlDAIt 51 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAIC 51 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8878888999998899999999
No 410
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.10 E-value=0.0078 Score=38.55 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCEEEE-EEEEECCCCCCCCCCCC
Q ss_conf 99998889999899999999748--980599-82110798998546875
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCD--QNFEMS-ISVTTRVRRPNEVDGKD 62 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~--~~~~~~-v~~TTR~~R~gE~~G~d 62 (222)
+|.++|.||||||||+.+|+... .++..+ +-|+-..-.. +..|.|
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H~f~~-D~pGkD 51 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDV-DKPGKD 51 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCC
T ss_conf 799994699999999999999999879849999457778889-999841
No 411
>KOG0055 consensus
Probab=96.09 E-value=0.0081 Score=38.43 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=17.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97299998889999899999999748
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.|..+.|+||||+||+|+.+-|...+
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~Rfy 403 (1228)
T KOG0055 378 SGQTVALVGPSGSGKSTLIQLLARFY 403 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99889998899987999999999726
No 412
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.08 E-value=0.033 Score=34.55 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHC--CCEEEEE-EEEECCCCCC-CCCCCCCCCCCHHHHHHHH-HCCEEEEEE
Q ss_conf 834797299998889999899999999748--9805998-2110798998-5468752223799986653-055244545
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCD--QNFEMSI-SVTTRVRRPN-EVDGKDYYFLSLSRFNELK-KANAFIEKA 84 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~--~~~~~~v-~~TTR~~R~g-E~~G~dY~Fvs~~~F~~~i-~~~~FlE~~ 84 (222)
|...++.+|=|.|++|+||+||..+|.... .+...+| +.---.|+.| -.= =++-.|+.+- +.|-|+---
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL------GDRiRM~~~~~~~~vFiRs~ 119 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL------GDRIRMQRLAVDPGVFIRSS 119 (323)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC------CCHHHHHHHCCCCCEEEEEC
T ss_conf 117998378731799886688999999999977967899998899998785301------20766776446998178426
Q ss_pred ECCCCCEEEECCHHHHH--H-HCCCCEEECCCHHHHHH
Q ss_conf 60457334132112232--2-10122030145234455
Q gi|255764507|r 85 EVHGNFYGTLRDPIEET--I-SKGKDMLFDIDWQGAQN 119 (222)
Q Consensus 85 ~~~g~~YGt~~~~i~~~--l-~~g~~~ildid~qG~~~ 119 (222)
-..|.+=|.|+++-+.+ + +.|.++|+ |+.-|+-+
T Consensus 120 ~srG~lGGlS~at~~~i~~ldAaG~DvII-VETVGvGQ 156 (323)
T COG1703 120 PSRGTLGGLSRATREAIKLLDAAGYDVII-VETVGVGQ 156 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEE-EEECCCCC
T ss_conf 87765101668899999999861898899-98147884
No 413
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.08 E-value=0.0081 Score=38.43 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=9.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999988899998999999997
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~ 37 (222)
.|++.|||||||+.|++.|.+
T Consensus 541 sFlf~GPTGvGKTElAK~LA~ 561 (823)
T CHL00095 541 SFIFCGPTGVGKTELTKALAS 561 (823)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899878998877999999999
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.08 E-value=0.007 Score=38.86 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 79729999888999989999999974898
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQN 41 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~ 41 (222)
+.+.-|+++||.|+||+|+.+.|+...|.
T Consensus 23 ~~~~nIlIsG~tGSGKTTll~al~~~i~~ 51 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 85998999899999899999999961334
No 415
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.08 E-value=0.0074 Score=38.71 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEE--EEEEEEECCC
Q ss_conf 8347972999988899998999999997489805--9982110798
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFE--MSISVTTRVR 53 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~--~~v~~TTR~~ 53 (222)
|.+..| -|+|+|-+.|||+||.++|+... .+. ...|-|||..
T Consensus 14 p~~~~p-~IaivGrpNvGKSTL~N~L~g~k-~~a~vs~~pGtTr~i 57 (179)
T TIGR03598 14 PPDDGP-EIAFAGRSNVGKSSLINALTNRK-KLARTSKTPGRTQLI 57 (179)
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHCCC-CEEEECCCCCEEEEC
T ss_conf 998897-89998699988899999986898-558970899736602
No 416
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.06 E-value=0.0066 Score=39.01 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCC
Q ss_conf 347972999988899998999999997489--805998211079899854687522237999866530552445456045
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQ--NFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHG 88 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~--~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g 88 (222)
..++|.+|.++|+||+||+||++.|-+.-- +....+ ---...|.|= +.|.=|-..+.-+...+-
T Consensus 439 ~g~~~~~iw~tGlsgsGKstiA~~le~~L~~~g~~~~~-LDGd~lR~gl--~~dlgf~~~dR~enirR~----------- 504 (613)
T PRK05506 439 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYV-LDGDNVRHGL--NRDLGFTDADRVENIRRV----------- 504 (613)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-ECCHHHHHHH--CCCCCCCHHHHHHHHHHH-----------
T ss_conf 48997699997789897479999999999977998799-8808987410--457797989999999999-----------
Q ss_pred CCEEEECCHHHHH-HHCCCCEEEC-CCHHHH--HHHHHCCC-CCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 7334132112232-2101220301-452344--55531267-41578986213279999999852011211289999999
Q gi|255764507|r 89 NFYGTLRDPIEET-ISKGKDMLFD-IDWQGA--QNLHKQMG-SNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRL 163 (222)
Q Consensus 89 ~~YGt~~~~i~~~-l~~g~~~ild-id~qG~--~~l~~~~~-~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl 163 (222)
..|-.. .++|.+||.- |.|--. ...|..++ .+.+-|||.+| +++.++| +++-+.++.
T Consensus 505 -------~eva~l~~~aG~i~i~a~iSp~~~~R~~~r~~~~~~~f~Ev~v~~~-le~c~~R----------DpKglY~ka 566 (613)
T PRK05506 505 -------AEVARLMADAGLIVLVSFISPFREERELARALIGEGEFVEVFVDTP-LEVCEAR----------DPKGLYAKA 566 (613)
T ss_pred -------HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECC-HHHHHHC----------CCHHHHHHH
T ss_conf -------9999999868988999758899899999997578887899999089-9999762----------955678998
Q ss_pred HHHHHHHHHH----------HHCCEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 9999999876----------418979994--988999999999999
Q gi|255764507|r 164 QNAYSEIKKW----------EFYDYVLIN--DDLENSLSILKSVIE 197 (222)
Q Consensus 164 ~~a~~E~~~~----------~~fD~vIvN--ddle~a~~~L~~iI~ 197 (222)
.+ .|++.. ..-|.+|-- .++++++.+|...++
T Consensus 567 r~--gei~~~tGi~~pYe~P~~p~l~i~t~~~~~~~~~~~i~~~l~ 610 (613)
T PRK05506 567 RA--GEIKNFTGIDSPYEAPENPELRLDTDGRSPEELAEQVLELLR 610 (613)
T ss_pred HC--CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 77--997887136878899999847975899999999999999998
No 417
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=96.06 E-value=0.02 Score=35.94 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC--------CCEEEEEEEEECCCCCCCCCCCC-CCCCCHHHHHHHH-----HC
Q ss_conf 4797299998889999899999999748--------98059982110798998546875-2223799986653-----05
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD--------QNFEMSISVTTRVRRPNEVDGKD-YYFLSLSRFNELK-----KA 77 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~--------~~~~~~v~~TTR~~R~gE~~G~d-Y~Fvs~~~F~~~i-----~~ 77 (222)
-+.|.+|+|.|+=||||+|+++.+++.. |-|..+-.|.+- ...+...| |..-+.+++..+- ..
T Consensus 12 l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~~~V~SPTF~lv~~Y~~~---~~~i~H~DlYRl~~~~e~~~lg~~e~~~~ 88 (123)
T pfam02367 12 LKAGDVVLLSGDLGAGKTTFVRGLAKGLGITGNVTSPTFTLVNVYEPG---KLPLYHYDLYRLEDPEELELLGILDYALE 88 (123)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCC---CCEEEEEEEECCCCHHHHHHCCCHHHHCC
T ss_conf 899979999888778899999999998599887379955889997089---96399998332699778987786566269
Q ss_pred --CEEEEEEEC
Q ss_conf --524454560
Q gi|255764507|r 78 --NAFIEKAEV 86 (222)
Q Consensus 78 --~~FlE~~~~ 86 (222)
=-|+||.+-
T Consensus 89 ~~i~~IEWpe~ 99 (123)
T pfam02367 89 DGIILVEWPER 99 (123)
T ss_pred CCEEEEECCHH
T ss_conf 98999999233
No 418
>PRK13764 ATPase; Provisional
Probab=96.05 E-value=0.0072 Score=38.79 Aligned_cols=69 Identities=28% Similarity=0.415 Sum_probs=41.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC----------C-----CCCCCCCHHH---HHH
Q ss_conf 479729999888999989999999974898059982110798998546----------8-----7522237999---866
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD----------G-----KDYYFLSLSR---FNE 73 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~----------G-----~dY~Fvs~~~---F~~ 73 (222)
..+| |+|+||+|+||+|+++.|.+.+.+-..+| -|--.||.--+. | -|-.+.++.. |++
T Consensus 258 ~a~G--ilIaG~PGaGKsTfaqalA~~~~~~g~iV-KTmEsPRDl~v~~~iTQy~~l~g~~e~t~diLlLvRPDytifDE 334 (605)
T PRK13764 258 RAEG--ILIAGAPGAGKSTFAQALAEFYADMGKIV-KTMESPRDLQVPPEITQYTPLEGSMEETADILLLVRPDYTIFDE 334 (605)
T ss_pred CCCE--EEEECCCCCCHHHHHHHHHHHHHHCCCEE-EECCCCCCCCCCCCCCEECCCCCCHHHHEEEEEEECCCCEEEEE
T ss_conf 3664--99977999977899999999998479789-83248623668954205243568877730067885488266400
Q ss_pred HHHCCEEEEE
Q ss_conf 5305524454
Q gi|255764507|r 74 LKKANAFIEK 83 (222)
Q Consensus 74 ~i~~~~FlE~ 83 (222)
|.+...|--|
T Consensus 335 ~R~~~Df~if 344 (605)
T PRK13764 335 MRKTEDFEVF 344 (605)
T ss_pred HHCCCCCCCE
T ss_conf 2043330000
No 419
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.05 E-value=0.01 Score=37.75 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 47972999988899998999999997489
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
.++|-++.|+||+|+||+||.+.|.-..|
T Consensus 283 v~~GE~~~i~G~nGsGKSTLl~~l~G~~p 311 (490)
T PRK10938 283 VNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 83898899986788879999999808897
No 420
>PRK10646 putative ATPase; Provisional
Probab=96.05 E-value=0.017 Score=36.41 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=43.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC--------CCEEEEEEEEECCCCCCCCCCCC-CCCCCHHHHHHH-----HHC-
Q ss_conf 797299998889999899999999748--------98059982110798998546875-222379998665-----305-
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD--------QNFEMSISVTTRVRRPNEVDGKD-YYFLSLSRFNEL-----KKA- 77 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~--------~~~~~~v~~TTR~~R~gE~~G~d-Y~Fvs~~~F~~~-----i~~- 77 (222)
+.|.+|+|.|+=||||+|+++.+++.. |-|..+-.|.+.+ ..+...| |..-+.++++.+ ...
T Consensus 26 ~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~~V~SPTf~lv~~Y~~~~---~~~~H~DlYRl~~~~e~~~lg~~e~~~~~ 102 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDN---LMVYHFDLYRLADPEELEFMGIRDYFAND 102 (153)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC---CEEEEEEEECCCCHHHHHHCCCHHHHCCC
T ss_conf 999799998888789999999999984997862699764799732899---33899985346998899877878885799
Q ss_pred C-EEEEEEEC
Q ss_conf 5-24454560
Q gi|255764507|r 78 N-AFIEKAEV 86 (222)
Q Consensus 78 ~-~FlE~~~~ 86 (222)
+ -++||.+-
T Consensus 103 ~i~lIEWpe~ 112 (153)
T PRK10646 103 AICLVEWPQQ 112 (153)
T ss_pred CEEEEECCCC
T ss_conf 6999989765
No 421
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=96.05 E-value=0.0066 Score=39.03 Aligned_cols=121 Identities=26% Similarity=0.398 Sum_probs=70.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEE-EEEEECCCCCEEEECC
Q ss_conf 999888999989999999974898059982110798998546875222379998665305524-4545604573341321
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAF-IEKAEVHGNFYGTLRD 96 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~F-lE~~~~~g~~YGt~~~ 96 (222)
|.|+||.|||||=|++.|.+.. +..|+++=-|---=+|=+ |+| | +.=..+++++-.+ ++-++ .|--| .+
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L-~VPfAiADATtLTEAGYV-GED---V-ENIL~~Llq~ad~DV~kA~-kGIiY---ID 224 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGYV-GED---V-ENILLKLLQAADYDVEKAQ-KGIIY---ID 224 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHHHHCCCCC-CCC---H-HHHHHHHHHHCCCCHHHHC-CCEEE---EE
T ss_conf 2454688852689999999873-887421111102006642-422---8-8999999874145524527-85089---84
Q ss_pred HHHHHHHC--CCCEEECCCHHHHHH-HHH----------------CCCCCHH------HHHHHCCCHHHHHHHHHHH
Q ss_conf 12232210--122030145234455-531----------------2674157------8986213279999999852
Q gi|255764507|r 97 PIEETISK--GKDMLFDIDWQGAQN-LHK----------------QMGSNVL------SFFILPPTMQELCSRLSLR 148 (222)
Q Consensus 97 ~i~~~l~~--g~~~ildid~qG~~~-l~~----------------~~~~~~~------~IFI~pps~e~L~~RL~~R 148 (222)
+|+++... |.++==|+.=+|+++ |.+ +-..+.+ ..||..=.+.=|++-...|
T Consensus 225 EIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R 301 (452)
T TIGR00382 225 EIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKR 301 (452)
T ss_pred CCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHH
T ss_conf 22310121577801122175549999998760323431754488688657688647640011054344489999887
No 422
>PRK09183 transposase/IS protein; Provisional
Probab=96.04 E-value=0.0047 Score=39.93 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 3479729999888999989999999974898059982110
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT 50 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT 50 (222)
+..++.-|+|.||+|+||+.|+..|-..-=.-++.|.|+|
T Consensus 97 fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~ 136 (258)
T PRK09183 97 FIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 136 (258)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 6655886799899998689999999999998799399978
No 423
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.04 E-value=0.005 Score=39.76 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCE--EEEEEEEECCC
Q ss_conf 9998889999899999999748980--59982110798
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNF--EMSISVTTRVR 53 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~--~~~v~~TTR~~ 53 (222)
|.|+|++.|||+||.++|+... .. ....|-|||.+
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~-~~~~vs~~~gtTr~i 38 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK-KLARTSKTPGKTQLI 38 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CEEEEECCCCEEEEE
T ss_conf 8999899999999999996899-627860789778520
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.0087 Score=38.24 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=20.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
..++++|.++||.||||+|-.-+|..
T Consensus 220 ~~~~kvi~lVGPTGVGKTTTiAKLAA 245 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77762999989999888999999999
No 425
>PRK06761 hypothetical protein; Provisional
Probab=96.01 E-value=0.011 Score=37.57 Aligned_cols=58 Identities=22% Similarity=0.227 Sum_probs=36.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCC-CCCCC---CCHHHHHHHHHC
Q ss_conf 7299998889999899999999748-980599821107989985468-75222---379998665305
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDG-KDYYF---LSLSRFNELKKA 77 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G-~dY~F---vs~~~F~~~i~~ 77 (222)
++||+|=|-+|+||||.++.|.+.- +...-+..|.- |+.|. .||.. .|+++|+.+..+
T Consensus 2 ~kLIiIEGlPGsGKSTta~~l~d~L~~~g~~v~~~~E-----gd~~hP~D~~~~A~~t~~e~~~ll~~ 64 (281)
T PRK06761 2 TKLIIIEGLPGFGKSTTAHLLNDKLSQLKIEVELFVE-----GDLNHPADYDWVACFTKFEYDRLLSN 64 (281)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE-----CCCCCCCHHHHHHCCCHHHHHHHHHH
T ss_conf 6179996689998014999999999866985389950-----78999611122210478889999885
No 426
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.01 E-value=0.0037 Score=40.60 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=37.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC--CCCCCCCCC
Q ss_conf 999988899998999999997489805998211079899854--687522237
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEV--DGKDYYFLS 67 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~--~G~dY~Fvs 67 (222)
+|+|+|.+-|||+||-++|+...-.+..-.+.|||-...+.. +|..+.+|+
T Consensus 3 ~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lvD 55 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVID 55 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 89998999987899999986886187159899984715899999992899998
No 427
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.99 E-value=0.009 Score=38.16 Aligned_cols=33 Identities=33% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 972999988899998999999997489805998
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSI 46 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v 46 (222)
.++=|||+|-.||||||+.|.|++.-|.=...|
T Consensus 157 ~~knIii~GGTgSGKTTf~kal~~~IP~~ER~i 189 (328)
T TIGR02788 157 SRKNIIISGGTGSGKTTFLKALVKEIPKDERLI 189 (328)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 389199990689718999999973276225278
No 428
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.013 Score=37.12 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=21.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
..++++|+++||.||||+|-+-+|..
T Consensus 171 ~~k~~vi~lVGPTGvGKTTTiAKLAa 196 (388)
T PRK12723 171 NLKKRIFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 55762899989988757879999999
No 429
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.98 E-value=0.0098 Score=37.91 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99988899998999999997
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~ 37 (222)
.||+|.+|||||.|...|.+
T Consensus 211 PiLVGepGVGKTAIvEGLA~ 230 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CEEECCCCCCHHHHHHHHHH
T ss_conf 74657999879999999999
No 430
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.011 Score=37.70 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEE
Q ss_conf 7972999988899998999999997-4898059
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK-CDQNFEM 44 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~ 44 (222)
+.|.++.|.||||+||+||.+.+.- ..|.-+.
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~ 58 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58 (345)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 688689997789876788999985757788756
No 431
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.96 E-value=0.0077 Score=38.57 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 729999888999989999999974898
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQN 41 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~ 41 (222)
+..++|.||+|+||+|+++.++.....
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 978999999970299999999987266
No 432
>KOG0744 consensus
Probab=95.96 E-value=0.0072 Score=38.79 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 299998889999899999999748
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|++-||+|.||++|+++|.++-
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744 178 RLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489985799988227999998751
No 433
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.92 E-value=0.011 Score=37.68 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999988899998999999997
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~ 37 (222)
.|++.||+||||+.|++.|.+
T Consensus 490 sFlf~GPTGVGKTElak~LA~ 510 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899978998777999999999
No 434
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.92 E-value=0.01 Score=37.81 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=35.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 78986213279999999852011211289999999999999987641897999498
Q gi|255764507|r 129 LSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDD 184 (222)
Q Consensus 129 ~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl~~a~~E~~~~~~fD~vIvNdd 184 (222)
..|+|.+| .+.-.+|+..|.. =+.+.+..++..-..+.......|++|.|+.
T Consensus 124 ~ii~V~a~-~~~r~~R~~~R~~---~s~~~~~~~~~~Q~~~~~k~~~aD~iI~N~~ 175 (179)
T cd02022 124 RVIVVDAP-PEIQIERLMKRDG---LSEEEAEARIASQMPLEEKRARADFVIDNSG 175 (179)
T ss_pred EEEEEECC-HHHHHHHHHHHCC---CCHHHHHHHHHHCCCHHHHHHHCCEEEECCC
T ss_conf 58999868-6889999998029---9899999999968998999985999998999
No 435
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.92 E-value=0.0084 Score=38.33 Aligned_cols=26 Identities=42% Similarity=0.468 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79729999888999989999999974
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
++|-.+-|+|+|||||+||.+.|+.-
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 38878999889999989999999487
No 436
>PRK13768 GTPase; Provisional
Probab=95.91 E-value=0.0095 Score=38.01 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998889999899999999748
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++++||+||||+|+++.+.+..
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l 26 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWL 26 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999999
No 437
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.90 E-value=0.0072 Score=38.76 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=34.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC---CCCCCCCCHHHH
Q ss_conf 999888999989999999974898059982110798998546---875222379998
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD---GKDYYFLSLSRF 71 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~---G~dY~Fvs~~~F 71 (222)
|.|+|++.|||+||.++|....+.. ...+-|||-|-.|.+. +..+.|++-.-|
T Consensus 3 VAiiG~pNvGKSTLlN~l~~~~~~V-~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi 58 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKI-ADYPFTTLVPNLGVVRVDDGRSFVVADIPGL 58 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEE-ECCCCCCCCCEEEEEEECCCCEEEEECCCCC
T ss_conf 8998999998999999996787603-2566652374477999369856999648864
No 438
>PRK03918 chromosome segregation protein; Provisional
Probab=95.90 E-value=0.0072 Score=38.78 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7299998889999899999999
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~ 36 (222)
+-+++|+||.|||||||..+++
T Consensus 23 ~Gi~~I~G~nGsGKStIlDAI~ 44 (882)
T PRK03918 23 SGINLIIGQNGSGKSSLLDAIL 44 (882)
T ss_pred CCCEEEECCCCCCHHHHHHHHH
T ss_conf 9927988999998899999999
No 439
>PRK13409 putative ATPase RIL; Provisional
Probab=95.87 E-value=0.0083 Score=38.38 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=36.9
Q ss_pred CCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEEEECCCCCCC
Q ss_conf 87300048347972999988899998999999997-48980599821107989985
Q gi|255764507|r 3 RDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNE 57 (222)
Q Consensus 3 ~~~~~~~~~~~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~TTR~~R~gE 57 (222)
-=++|-.|.-+.|.++=|+||.|+||||+.+-|.- -.|+.+-+ +.+|...|
T Consensus 87 ~f~l~~lp~p~~G~v~GLiG~NGaGKST~lkILsG~l~Pn~G~v----~~~p~~~e 138 (590)
T PRK13409 87 GFKLYGLPIPKEGKVTGILGPNGIGKSTAVKILSGELIPNLGNY----EEEPSWDE 138 (590)
T ss_pred CEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC----CCCCCHHH
T ss_conf 43560789899987899889999989999999958714888977----88877889
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.86 E-value=0.019 Score=36.02 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|.+|.++||.||||+|-+-+|..
T Consensus 72 ~~~~~vI~lvG~~G~GKTTT~AKLA~ 97 (270)
T PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79981899988898988999999999
No 441
>PRK06851 hypothetical protein; Provisional
Probab=95.85 E-value=0.011 Score=37.66 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7299998889999899999999748
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
-+++||-|++|+||+|+++++-+..
T Consensus 31 ~ri~ilKGGpGtGKStlmK~ig~~~ 55 (368)
T PRK06851 31 NRIFILKGGPGTGKSTLMKKIGEEF 55 (368)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2799996899977899999999999
No 442
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.85 E-value=0.0089 Score=38.18 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 97299998889999899999999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.|.+++|+||+|+||+|+.+.+.
T Consensus 20 ~g~~~iItGpN~sGKSt~Lr~i~ 42 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 98689998998775799999999
No 443
>PRK04213 GTP-binding protein; Provisional
Probab=95.84 E-value=0.0063 Score=39.13 Aligned_cols=36 Identities=28% Similarity=0.149 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCC
Q ss_conf 9999888999989999999974898059982110798
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVR 53 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~ 53 (222)
.|+|+|-+.||||||.++|...... ....|-|||-+
T Consensus 3 ~VaivGRpNVGKSTL~N~L~g~k~~-vs~~pg~Tr~~ 38 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALTGKKVR-VGKRPGVTLKP 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEE
T ss_conf 7999769998899999999689851-34899648734
No 444
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.84 E-value=0.0093 Score=38.07 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.++|-++-|+||||+||+||++.|.--
T Consensus 307 v~~GEi~gi~G~nGsGKsTL~k~l~Gl 333 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 728968999878888789999999488
No 445
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.84 E-value=0.0044 Score=40.12 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEE-EEEEE---ECCCCCCCCCCCC
Q ss_conf 999988899998999999997489--8059-98211---0798998546875
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQ--NFEM-SISVT---TRVRRPNEVDGKD 62 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~--~~~~-~v~~T---TR~~R~gE~~G~d 62 (222)
|+.|+|+|+||||||..+|.+... ++.. +|=|. +=.++-. .+|.|
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d-~~GkD 51 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDID-KEGKD 51 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEC-CCCCC
T ss_conf 9378962588678999999999970799508986089888756527-99873
No 446
>pfam01202 SKI Shikimate kinase.
Probab=95.83 E-value=0.026 Score=35.17 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=36.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCC---CHH-HHHHHHHHHHHHHHHHHHHHCCEEEECC--CHHHHHHHHHHHH
Q ss_conf 5789862132799999998520112---112-8999999999999998764189799949--8899999999999
Q gi|255764507|r 128 VLSFFILPPTMQELCSRLSLRAKKN---QED-KEKVQLRLQNAYSEIKKWEFYDYVLIND--DLENSLSILKSVI 196 (222)
Q Consensus 128 ~~~IFI~pps~e~L~~RL~~R~~~~---~d~-~e~i~~Rl~~a~~E~~~~~~fD~vIvNd--dle~a~~~L~~iI 196 (222)
.++||+..| .+.+.+|+..+..+. .++ .+.+..-+. ..+-.|...-|++|..+ +.++.++++.+.|
T Consensus 86 g~vi~L~~~-~~~i~~Rl~~~~~RPll~~~~~~~~~~~l~~--~R~~~Y~~~a~~~i~~~~~~~~ei~~~Ii~~l 157 (158)
T pfam01202 86 GIVVYLDAD-PEVLLERLKADKTRPLLQDKDPEEELLELLF--ERCPLYEEAADIVVDTDESSPEEVAEEILEAL 157 (158)
T ss_pred CEEEEEECC-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 927998499-9999999717999998989987999999999--99999998699998799999999999999975
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.81 E-value=0.012 Score=37.39 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998889999899999999748
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
+|.|.||||+||+|+++.|.+..
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97883688887258999999995
No 448
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=95.80 E-value=0.0079 Score=38.52 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=38.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 7972999988899998999999997-4898059982110798998546875222379998665305
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKA 77 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~ 77 (222)
.+|-++-|+|.|||||+||..-|-- +.|--+-+. .+|++-.=.|..+.-++...
T Consensus 29 ~~GE~~~IvG~SGSGKSTLLHlLGGLD~PT~G~v~-----------f~G~~l~~lS~~~~~~LRN~ 83 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL-----------FNGQSLSKLSSNERAKLRNK 83 (221)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-----------ECCCCHHHCCHHHHHHHHHH
T ss_conf 06633798736787168999987306899631589-----------70632344044678875122
No 449
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=95.80 E-value=0.015 Score=36.78 Aligned_cols=168 Identities=20% Similarity=0.268 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEECCCCCCH----HHHHHHHHHHCCC--EEEEE-EE----EECCCCCCCC-CCCCCCCCCHHHHHHH---
Q ss_conf 8347972999988899998----9999999974898--05998-21----1079899854-6875222379998665---
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGK----STIARHLLKCDQN--FEMSI-SV----TTRVRRPNEV-DGKDYYFLSLSRFNEL--- 74 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK----~tl~~~L~~~~~~--~~~~v-~~----TTR~~R~gE~-~G~dY~Fvs~~~F~~~--- 74 (222)
|...++.+|-|+|.||||| ||+.+.+.+.... -..++ +- -.-.|..-+. .-..+-|=-.+.|+..
T Consensus 5 P~~~~c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~Ll~ 84 (220)
T TIGR00235 5 PPKGTCIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDLLY 84 (220)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHHHH
T ss_conf 89886179970176610156789999999999831400145775032445889887312464312588980030379999
Q ss_pred -----HHCCE--------EEEEEECCCCCEEEECCHHHHHHHCCC-CEEECCCHHHHHHH-----HHCCCCCHHHHHHHC
Q ss_conf -----30552--------445456045733413211223221012-20301452344555-----312674157898621
Q gi|255764507|r 75 -----KKANA--------FIEKAEVHGNFYGTLRDPIEETISKGK-DMLFDIDWQGAQNL-----HKQMGSNVLSFFILP 135 (222)
Q Consensus 75 -----i~~~~--------FlE~~~~~g~~YGt~~~~i~~~l~~g~-~~ildid~qG~~~l-----~~~~~~~~~~IFI~p 135 (222)
.++|. |++|+.+ .-+.+.=.++ +|||+ |..-+ +... + +.|||-+
T Consensus 85 ~Hl~nLk~g~~~~~P~Ydyv~HtRv----------~~eT~~~~P~~VvIlE----Gi~~l~D~Rl~~L~--d-lkifvDt 147 (220)
T TIGR00235 85 EHLKNLKNGSAIDVPVYDYVNHTRV----------KKETVHVEPKDVVILE----GILLLTDERLRDLM--D-LKIFVDT 147 (220)
T ss_pred HHHHHHHCCCEECCCCCCCCCEECC----------CCCCEEECCEEEEEEE----CCHHHHHHHHHHHH--C-CEEEEEC
T ss_conf 9999984688022454254100202----------5562687350689970----61888879998871--8-2367746
Q ss_pred CCHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHHHH-----HHHHCCEEEEC-CCHHHHHHHHHHHHH
Q ss_conf 32799999998----5201121128999999999999998-----76418979994-988999999999999
Q gi|255764507|r 136 PTMQELCSRLS----LRAKKNQEDKEKVQLRLQNAYSEIK-----KWEFYDYVLIN-DDLENSLSILKSVIE 197 (222)
Q Consensus 136 ps~e~L~~RL~----~R~~~~~d~~e~i~~Rl~~a~~E~~-----~~~~fD~vIvN-ddle~a~~~L~~iI~ 197 (222)
|.-..|.+||. +||+ +=+-.|++-.+...=... -..+-|.+|-. .+=+.|..-|..-|.
T Consensus 148 ~~D~rliRRl~RD~~~RGR---~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I~ 216 (220)
T TIGR00235 148 PLDIRLIRRLERDIEERGR---SLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKIK 216 (220)
T ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 8303256565655754289---78899999998534621014550101466762589881688999999999
No 450
>KOG3580 consensus
Probab=95.80 E-value=0.021 Score=35.75 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=64.2
Q ss_pred EECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHHH-HH
Q ss_conf 13211223221012203014523445553126741578986213279999999852011211289999999-99999-99
Q gi|255764507|r 93 TLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRL-QNAYS-EI 170 (222)
Q Consensus 93 t~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl-~~a~~-E~ 170 (222)
+...+|+.++++.|..+||+.|.++..|. +...-+++||..|.|..-++. ++.|.. ..+-. -.++| ..|.. --
T Consensus 675 irL~TvrqiieqDKHALLDVTP~AvdrLN-Y~QwypIVvff~PdSrqgvkt-mRqrL~--P~Sr~-SsRkLy~~a~KL~K 749 (1027)
T KOG3580 675 IRLNTVRQIIEQDKHALLDVTPKAVDRLN-YTQWYPIVVFFNPDSRQGVKT-MRQRLA--PTSRK-SSRKLYDQANKLKK 749 (1027)
T ss_pred EEEHHHHHHHHCCCCHHHCCCHHHHHHHC-CCEEEEEEEEECCCCHHHHHH-HHHHHC--CCCCH-HHHHHHHHHHHHHH
T ss_conf 87324577775153143306877875523-000235899967762578999-998738--42211-57999999988865
Q ss_pred HHHHHCCEEEE-CCCHHHHHHHHHHHHHHH
Q ss_conf 87641897999-498899999999999998
Q gi|255764507|r 171 KKWEFYDYVLI-NDDLENSLSILKSVIEVE 199 (222)
Q Consensus 171 ~~~~~fD~vIv-Nddle~a~~~L~~iI~~e 199 (222)
.+.|.|...|. |.--+.-|..|+.+|..+
T Consensus 750 ~~~HLFTaTInLNs~nD~Wyg~LK~~iq~Q 779 (1027)
T KOG3580 750 TCAHLFTATINLNSANDSWYGSLKDTIQHQ 779 (1027)
T ss_pred HCHHHEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 121015766515777706789999999976
No 451
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.80 E-value=0.011 Score=37.69 Aligned_cols=50 Identities=34% Similarity=0.369 Sum_probs=32.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 729999888999989999999974898059982110798998546875222379998665
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~ 74 (222)
|-.+-|+||||+||+||.+.|.---+-.+- +-| .||-|..==++++|-+.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G----~VR------LDga~l~qWd~e~lG~h 411 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSG----SVR------LDGADLRQWDREQLGRH 411 (580)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC----CEE------ECCHHHHCCCHHHHCCC
T ss_conf 866788788876577899999811356787----377------56264512798885113
No 452
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.016 Score=36.61 Aligned_cols=92 Identities=28% Similarity=0.479 Sum_probs=51.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEE-EEEEECCCCCEEEECC
Q ss_conf 999888999989999999974898059982110798998546875222379998665305524-4545604573341321
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAF-IEKAEVHGNFYGTLRD 96 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i~~~~F-lE~~~~~g~~YGt~~~ 96 (222)
|+++||+|+||+-|++.|.+.. +..|++.-.|----+|=+ |.| | +.-..+++++-.| +|-++ .|-.| .+
T Consensus 100 ILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYV-GED---V-ENillkLlqaadydV~rAe-rGIIy---ID 169 (408)
T COG1219 100 ILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYV-GED---V-ENILLKLLQAADYDVERAE-RGIIY---ID 169 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEECCCCCHHHCCCC-CHH---H-HHHHHHHHHHCCCCHHHHH-CCEEE---EE
T ss_conf 7998889975779999999984-898475144412106635-500---8-9999999987645888882-88599---85
Q ss_pred HHHHHHHCCCC--EEECCCHHHHHH
Q ss_conf 12232210122--030145234455
Q gi|255764507|r 97 PIEETISKGKD--MLFDIDWQGAQN 119 (222)
Q Consensus 97 ~i~~~l~~g~~--~ildid~qG~~~ 119 (222)
+|+++....-. +--|+.-+|+++
T Consensus 170 EIDKIarkSen~SITRDVSGEGVQQ 194 (408)
T COG1219 170 EIDKIARKSENPSITRDVSGEGVQQ 194 (408)
T ss_pred CHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 1025420578987234367358999
No 453
>PRK00454 engB GTPase EngB; Reviewed
Probab=95.79 E-value=0.0072 Score=38.76 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEE--EEEEEEECC
Q ss_conf 8347972999988899998999999997489805--998211079
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFE--MSISVTTRV 52 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~--~~v~~TTR~ 52 (222)
|.+..|. |+|+|.+.|||+||.++|+... .+. ...|.|||.
T Consensus 20 p~~~~p~-VaivGrpNvGKSTL~N~L~g~k-~~a~vs~~pgtTr~ 62 (196)
T PRK00454 20 PPDDGPE-IAFAGRSNVGKSSLINALTNRK-NLARTSKTPGRTQL 62 (196)
T ss_pred CCCCCCE-EEEECCCCCCHHHHHHHHHCCC-CEEEEECCCCCEEE
T ss_conf 9988968-9998489888999999986897-36997478886079
No 454
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.0098 Score=37.90 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=21.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
..+|..++|.||+||||+||.+.|.-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 87898999988999889999999537
No 455
>PRK08181 transposase; Validated
Probab=95.77 E-value=0.0077 Score=38.60 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=25.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 3479729999888999989999999974898059982110
Q gi|255764507|r 11 VNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT 50 (222)
Q Consensus 11 ~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT 50 (222)
+..++.-++|.||+|+||+.|+..|-..--.-++.|.|+|
T Consensus 102 fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~ 141 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8864870899899998788999999999998799399978
No 456
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.76 E-value=0.0078 Score=38.53 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=17.3
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 9729999888999989999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIA 32 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~ 32 (222)
|.+++|++|+|||||+||+
T Consensus 25 ~~~lvViTGvSGSGKSSLA 43 (1809)
T PRK00635 25 PREIVLLTGVSGSGKSSLA 43 (1809)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9988999799889789999
No 457
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.76 E-value=0.016 Score=36.48 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 9999888999989999999974898059982110
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT 50 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT 50 (222)
=+|+-||+|+|||||++-+.+....--...+.||
T Consensus 54 S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~ 87 (726)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (726)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 2788897999999999999887488679985620
No 458
>KOG0055 consensus
Probab=95.76 E-value=0.017 Score=36.45 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=30.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 97299998889999899999999748-9805998211079899854687522237999866
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE 73 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~ 73 (222)
.|.=+.|+||||+||+|++..|-..+ |.-+.+. +||.|-.=++-..-.+
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~-----------IDg~di~~~nl~~LR~ 1064 (1228)
T KOG0055 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK-----------IDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE-----------ECCCCCCCCCHHHHHH
T ss_conf 9988999889988799899999984388887599-----------8783145488799997
No 459
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=95.74 E-value=0.0068 Score=38.92 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCC
Q ss_conf 9999888999989999999974898059982110798998--54687522237
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLS 67 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs 67 (222)
+|.|+|.+.|||+||-++|......+..-.|-|||-...+ +.+|..+.+++
T Consensus 40 iVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~~~f~lvD 92 (474)
T PRK03003 40 VVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNGRRFVVQD 92 (474)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf 89998999988899999986886388059899880863689999992899997
No 460
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.73 E-value=0.01 Score=37.83 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=28.7
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 834797299998889999899999999748-98059982110798998546875222379
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSL 68 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~ 68 (222)
...++| ||+++||.||||||=.-.++..- .....-| -|= .|=++|-|-++
T Consensus 123 a~~~~G-LiLVTGPTGSGKSTTlAsmIDyIN~~~~~HI-iTI-------EDPIEyvh~~~ 173 (350)
T TIGR01420 123 AERPRG-LILVTGPTGSGKSTTLASMIDYINKNKAGHI-ITI-------EDPIEYVHKNK 173 (350)
T ss_pred HHCCCC-CEEEECCCCCCHHHHHHHHHHHHHCCCCCCC-EEE-------ECCEEEEECCC
T ss_conf 836699-3898768898678999999978740388882-563-------17731410477
No 461
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.01 Score=37.87 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH-HHC
Q ss_conf 97299998889999899999999-748
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLL-KCD 39 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~-~~~ 39 (222)
.+-+++|+||.|||||||..++. .-+
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~ALy 50 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFALY 50 (908)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 888379989999978899999999982
No 462
>pfam03976 PPK2 Polyphosphate kinase 2 (PPK2). Inorganic polyphosphate (polyP) plays a role in metabolism and regulation and has been proposed to serve as a energy source in a pre-ATP world. In prokaryotes, the synthesis and utilisation of polyP are catalysed by PPK1, PPK2 and polyphosphatases. Proteins with a single PPK2 domain catalyse polyP-dependent phosphorylation of ADP to ATP, whereas proteins containing 2 fused PPK2 domains phosphorylate AMP to ADP. The structure of PPK2 from Pseudomonas aeruginosa has revealed a a 3-layer alpha/beta/alpha sandwich fold with an alpha-helical lid similar to the structures of microbial thymidylate kinases.
Probab=95.71 E-value=0.019 Score=36.09 Aligned_cols=128 Identities=11% Similarity=0.165 Sum_probs=65.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH-HHCCEEEEEEECCCC
Q ss_conf 47972999988899998999999997-4898059982110798998546875222379998665-305524454560457
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL-KKANAFIEKAEVHGN 89 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~-~~~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~-i~~~~FlE~~~~~g~ 89 (222)
.++|.+||+-|..||||+.++++|.. -+|..-.+ |+.-+|-.-|.. .+ |. -.|... =..|.+ +-+++-
T Consensus 28 ~~~~viIv~eG~daaGKg~~I~~l~~~lDPrg~~v--~~~~~pt~eE~~-~p--~l--wRfw~~lP~~G~I---~iFdrS 97 (229)
T pfam03976 28 EGKKLVVIFEGRDAAGKGGAIKRITEALNPRGARI--VALPAPTEEERS-QW--YF--QRYVQHLPAGGEI---VLFDRS 97 (229)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--EECCCCCHHHHC-CC--HH--HHHHHHCCCCCEE---EEECCC
T ss_conf 59948999966577873699999986259885699--868999978847-86--19--9998637777818---997462
Q ss_pred CEEEE-CCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 33413-21122322101220301452344555312674157898621327999999985201
Q gi|255764507|r 90 FYGTL-RDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAK 150 (222)
Q Consensus 90 ~YGt~-~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~ 150 (222)
+|+-. .+-+...+......-.--++....+....-+.-++-+|+.- |.++..+||..|-.
T Consensus 98 WY~~~l~~rv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~lhI-sk~eQ~~Rl~~r~~ 158 (229)
T pfam03976 98 WYNRAGVERVMGFCTPKQYERFLREIPEFERMLTDSGIRVVKFWLSI-SDEEQLERFKERRN 158 (229)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHHC
T ss_conf 55668999983449999999999999999999996794599998854-98999999998742
No 463
>PTZ00243 ABC transporter; Provisional
Probab=95.68 E-value=0.012 Score=37.32 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 479729999888999989999999974898
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQN 41 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~ 41 (222)
..+|.+++|+||.|+||+||...|+.+.+.
T Consensus 683 v~~G~L~~IvG~vGSGKSSLL~aiLGE~~~ 712 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 659978999899998799999999688843
No 464
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.68 E-value=0.018 Score=36.26 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=30.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCC--CEEE-EEEEEECCCCCCCCCCCCCC
Q ss_conf 2999988899998999999997489--8059-98211079899854687522
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQ--NFEM-SISVTTRVRRPNEVDGKDYY 64 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~--~~~~-~v~~TTR~~R~gE~~G~dY~ 64 (222)
+++-++|+|+|||+||+.+|+.... ++.. ++-|+-..++.. ..|.|-+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D-~~GkDs~ 53 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLD-KPGKDTY 53 (161)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-CCCCCCC
T ss_conf 28999962799734289999999975793799998658777778-8987661
No 465
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.67 E-value=0.009 Score=38.15 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCC
Q ss_conf 79729999888999989999999974898059982110798
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVR 53 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~ 53 (222)
.++.-+.++|-+.|||+||.+.|+...--....+|-|||-.
T Consensus 98 ~~~~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~ 138 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECE
T ss_conf 56608999877774477899998478506266999838355
No 466
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.67 E-value=0.0092 Score=38.08 Aligned_cols=21 Identities=43% Similarity=0.487 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999988899998999999997
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~ 37 (222)
+|-|+|+|||||||+++.|.+
T Consensus 1 IIGIaG~sgSGKST~a~~l~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 989788998779999999999
No 467
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.67 E-value=0.012 Score=37.36 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 72999988899998999999997
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
|.+|.++||+||||+|-.-+|..
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa 23 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAA 23 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 96999989999988999999999
No 468
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.66 E-value=0.0098 Score=37.91 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=24.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 47972999988899998999999997489
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
..+|.+++|.||.|+||||+.+.++-..+
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 76898899989998888999999858987
No 469
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.012 Score=37.44 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|-++.|+||||+||+||.+.|+...
T Consensus 285 v~~GEi~gi~G~nGsGKsTLl~~L~Gl~ 312 (513)
T PRK13549 285 LRRGEILGIAGLVGAGRTELVQCLFGAY 312 (513)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8688489974798865899999983898
No 470
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=95.64 E-value=0.066 Score=32.59 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 999988899998999999997489
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
-|+|.||..+|||||++.|.+.+.
T Consensus 233 kVvIlG~ESTGKTTL~~~LA~~yn 256 (411)
T PRK08099 233 TVAILGGESSGKSTLVNKLANIFN 256 (411)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989998888999999999978
No 471
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.012 Score=37.37 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 72999988899998999999997489
Q gi|255764507|r 15 GMMLIISSPSGVGKSTIARHLLKCDQ 40 (222)
Q Consensus 15 ~~iivl~GpsG~GK~tl~~~L~~~~~ 40 (222)
-.+|+|.||=|+|||||++.|.++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 60899844644687899999998838
No 472
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.63 E-value=0.012 Score=37.45 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998889999899999999748
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~ 39 (222)
+++.||+|+||+|++..|++..
T Consensus 40 lLf~GppG~GKTt~a~~la~~l 61 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALAREL 61 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9888959988999999999997
No 473
>PRK06217 hypothetical protein; Validated
Probab=95.61 E-value=0.012 Score=37.37 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999888999989999999974
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~ 38 (222)
|+|+|.||+||+||.++|.+.
T Consensus 4 I~i~G~sGsGkSTla~~La~~ 24 (185)
T PRK06217 4 IHITGASGSGTTTLGAALAEA 24 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789988789999999997
No 474
>PRK06526 transposase; Provisional
Probab=95.61 E-value=0.0077 Score=38.57 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=21.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8347972999988899998999999997
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.+.+++.-++|+||+|+||+.|+..|..
T Consensus 93 ~fi~~~~Nvil~G~~GtGKThLA~Alg~ 120 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 1776588789989999868999999999
No 475
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.61 E-value=0.0091 Score=38.13 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 4797299998889999899999999748980
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNF 42 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~ 42 (222)
..+.++++|.||.|+||+||+..|......+
T Consensus 75 ~~~k~IllL~GPvGsGKStl~~~Lk~~lE~y 105 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 7125699998899887799999999999986
No 476
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.012 Score=37.42 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 4797299998889999899999999748
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++|-++.|.||+|+||+||.+.|.--.
T Consensus 286 v~~GEi~gl~G~nGsGKsTL~~~l~Gl~ 313 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7488189997688862889999981988
No 477
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.59 E-value=0.015 Score=36.66 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEEEECCCCC
Q ss_conf 79729999888999989999999974898-05998211079899
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVRRP 55 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~v~~TTR~~R~ 55 (222)
+.++=|+++|+.|+||+|+.++|+...|. -+.++-=.|+.-..
T Consensus 160 ~~r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l 203 (343)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVI 203 (343)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf 76988999888986199999999962896552799611500258
No 478
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.57 E-value=0.017 Score=36.35 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEEEECCC
Q ss_conf 9729999888999989999999974898-059982110798
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVR 53 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~v~~TTR~~ 53 (222)
.++-|+++|+.|+||+|+.+.|+...|. -+.++-=.|+.-
T Consensus 159 ~r~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHH
T ss_conf 48719998888988999999998358953535663140663
No 479
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=95.57 E-value=0.011 Score=37.65 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 299998889999899999999
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~ 36 (222)
.+++|+||.||||+||.+++.
T Consensus 31 ~~f~i~G~tGAGKtsLldAI~ 51 (1063)
T TIGR00618 31 KLFVICGKTGAGKTSLLDAIT 51 (1063)
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 736777889983545999999
No 480
>PRK01156 chromosome segregation protein; Provisional
Probab=95.56 E-value=0.011 Score=37.48 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 97299998889999899999999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
.+-+++|+||.|||||||..++.
T Consensus 22 ~~Gi~~I~G~NGaGKStIldAI~ 44 (895)
T PRK01156 22 DTGINIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
T ss_conf 99927888999998789999999
No 481
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=95.55 E-value=0.095 Score=31.60 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998889999899999999748
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~ 39 (222)
|+|+|++||||+++++-+....
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~ 23 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNY 23 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7875689998777699986799
No 482
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.53 E-value=0.014 Score=36.98 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+||||+||+||.+.|..
T Consensus 275 v~~GEi~gi~G~nGsGKsTL~~~l~G 300 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 66881899667888768899999818
No 483
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=95.52 E-value=0.012 Score=37.42 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=26.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 83479729999888999989999999974898059982110
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT 50 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TT 50 (222)
.+.+++.-+++.||+|+||+.|+.++...--.-++.+.|+|
T Consensus 42 ~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~ 82 (178)
T pfam01695 42 DWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTR 82 (178)
T ss_pred CCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 74215876899899998789999999999998698599996
No 484
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.50 E-value=0.012 Score=37.24 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
.++|-++.|+|+||+||+||.+.|.-
T Consensus 276 v~~GEivgivG~nGsGKSTL~k~L~G 301 (501)
T PRK11288 276 VRRGEIVGFFGLVGAGRSELMKLLYG 301 (501)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHCC
T ss_conf 70883999756888648799998438
No 485
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.47 E-value=0.015 Score=36.79 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 797299998889999899999999748
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.++++|.|+||.||||+|-..+|...+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 468579998998875887999999999
No 486
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=95.43 E-value=0.012 Score=37.29 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999888999989999999974
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~ 38 (222)
|.|+|+++||||||.++|...
T Consensus 4 VaivGrpNvGKSTLlN~L~g~ 24 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALNGE 24 (143)
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899999999999997599
No 487
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=95.43 E-value=0.0057 Score=39.40 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=33.6
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC---CCCCCCCCHHH
Q ss_conf 9888999989999999974898059982110798998546---87522237999
Q gi|255764507|r 20 ISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD---GKDYYFLSLSR 70 (222)
Q Consensus 20 l~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~---G~dY~Fvs~~~ 70 (222)
|+|++.|||+||.++|....+.. -..|-|||.+-.|-.. |..+.|++-.-
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v-~~~pgTTr~~~~g~~~~~~~~~i~~~DtpG 53 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-ANYPFTTLEPNLGVVEVPDGARIQVADIPG 53 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEE-ECCCCCEEEEEEEEEEECCCCEEEEEECCC
T ss_conf 96999888999999996899603-078996761246799947996699995787
No 488
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.43 E-value=0.019 Score=36.12 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 299998889999899999999748980599
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQNFEMS 45 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 45 (222)
-+|.|-|||||||+|+++.|.+.. +|.+.
T Consensus 443 pIIaIDGpagsGKsT~ak~lA~~l-~~~yl 471 (662)
T PRK11860 443 PVICIDGPTASGKGTLAAAVAQAL-GYHYL 471 (662)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCCEE
T ss_conf 789965787568689999999995-99676
No 489
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.39 E-value=0.023 Score=35.49 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=29.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEEEECCCCCCCCCCCC
Q ss_conf 2999988899998999999997489--80599-82110798998546875
Q gi|255764507|r 16 MMLIISSPSGVGKSTIARHLLKCDQ--NFEMS-ISVTTRVRRPNEVDGKD 62 (222)
Q Consensus 16 ~iivl~GpsG~GK~tl~~~L~~~~~--~~~~~-v~~TTR~~R~gE~~G~d 62 (222)
++|-++|.||||||||+.+|+.... ++..+ +=|+--.- +=+..|.|
T Consensus 2 kii~ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H~f-~~D~~GkD 50 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDF-DIDTPGKD 50 (159)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCCCCCCH
T ss_conf 29999967999999999999999997798598997347677-77789844
No 490
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.38 E-value=0.015 Score=36.78 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998889999899999999748
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~ 39 (222)
|+++|++||||+||.+++...+
T Consensus 2 ivilG~~~~GKTsll~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999988889999887503
No 491
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.025 Score=35.25 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=39.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCC-CCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 797299998889999899999999748-98059982110798-9985468752223799986653055244545604573
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVR-RPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNF 90 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~-R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~ 90 (222)
..|-.+|+.||||+||+||.+-+.-.. |.-+. +.---|+. -||-.-|+ .| ++...+-|-.+-+|.
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~-i~l~~r~i~gPgaergv--VF----------Q~~~LlPWl~~~dNv 95 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGPGAERGV--VF----------QNEALLPWLNVIDNV 95 (259)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCCCCEE--EE----------CCCCCCHHHHHHHHH
T ss_conf 589789997688865788999986275856664-88899865688743234--73----------267633046778888
Q ss_pred -EEEECCHHHH
Q ss_conf -3413211223
Q gi|255764507|r 91 -YGTLRDPIEE 100 (222)
Q Consensus 91 -YGt~~~~i~~ 100 (222)
||.....|.+
T Consensus 96 afgL~l~Gi~k 106 (259)
T COG4525 96 AFGLQLRGIEK 106 (259)
T ss_pred HHHHHHCCCCH
T ss_conf 87777648878
No 492
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.37 E-value=0.022 Score=35.67 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEEEE-CCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECC
Q ss_conf 83479729999888999989999999974898-059982110-7989985468752223799986653055244545604
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQN-FEMSISVTT-RVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVH 87 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~v~~TT-R~~R~gE~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~ 87 (222)
|-.+||..|-++|=||||||||++.|....-. -...+..-- -..|.| =+.|-=| |++.=...++.-.
T Consensus 387 Pr~~~G~tiwlTGLsgsGKsTiA~al~~~L~~~~~~~v~lLDGD~~R~~--l~~dLgf-s~~dR~enirR~~-------- 455 (568)
T PRK05537 387 PRHKQGFTVFFTGLSGAGKSTIAKALMAKLMEMRGRPVTLLDGDVVRKH--LSSELGF-SKEDRDLNILRIG-------- 455 (568)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH--HCCCCCC-CHHHHHHHHHHHH--------
T ss_conf 7445864999845788877699999999999718927999546888742--1557898-9889999999999--------
Q ss_pred CCCEEEECCHHHH-HHHCCCCEEEC-CCHHHH-H-HHHHCCC--CCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 5733413211223-22101220301-452344-5-5531267--415789862132799999998520112112899999
Q gi|255764507|r 88 GNFYGTLRDPIEE-TISKGKDMLFD-IDWQGA-Q-NLHKQMG--SNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQL 161 (222)
Q Consensus 88 g~~YGt~~~~i~~-~l~~g~~~ild-id~qG~-~-~l~~~~~--~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~ 161 (222)
.|-+ ..++|-+||.. |.|... + ..|+..+ ...+-|||.+| +++.++|= .+-+-+
T Consensus 456 ---------~va~~~~~~g~i~i~a~isP~~~~R~~~r~~~~~~~~f~ev~v~~p-le~c~~RD----------~KGlY~ 515 (568)
T PRK05537 456 ---------FVASEITKNGGIAICAPIAPYRATRREVREMIEAFGAFIEVYVATP-IEVCEQRD----------RKGLYK 515 (568)
T ss_pred ---------HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHCC----------CCHHHH
T ss_conf ---------9999998589789995069997999999998523797799997898-99997728----------611778
Q ss_pred HHHHHHHHHHHH----------HHCCEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf 999999999876----------418979994--9889999999999999
Q gi|255764507|r 162 RLQNAYSEIKKW----------EFYDYVLIN--DDLENSLSILKSVIEV 198 (222)
Q Consensus 162 Rl~~a~~E~~~~----------~~fD~vIvN--ddle~a~~~L~~iI~~ 198 (222)
+.. ..|++.. ..-|.+|.. .+++++++++...++.
T Consensus 516 ka~--~G~i~~ftGi~~pye~P~~pdl~idt~~~~~~~~v~~ii~~L~~ 562 (568)
T PRK05537 516 KAR--EGKIKEFTGISDPYEPPANPELVIDTTNITPDECAHKILLYLEE 562 (568)
T ss_pred HHH--CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 985--79978986689999999998079878999999999999999997
No 493
>PRK13695 putative NTPase; Provisional
Probab=95.36 E-value=0.033 Score=34.51 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCEEEEEEEEECCCCC-CCCCC
Q ss_conf 99998889999899999999748--9805998211079899-85468
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCD--QNFEMSISVTTRVRRP-NEVDG 60 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~--~~~~~~v~~TTR~~R~-gE~~G 60 (222)
-|.|+||+|+|||||.+++++.- +++...= .-|.+.|. |+.-|
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~G-F~T~Evre~G~R~G 50 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKVGG-FITEEVREGGKRIG 50 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE-EEEEEEECCCEEEE
T ss_conf 99987899988999999999998636961746-99525603882850
No 494
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=95.36 E-value=0.019 Score=36.04 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998889999899999999748
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~ 39 (222)
++|.||+|+||+++++.+.+..
T Consensus 1 iLl~GppGtGKT~~a~~la~~~ 22 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL 22 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 9878999999999999999997
No 495
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.35 E-value=0.029 Score=34.93 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999988899998999999997
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~ 37 (222)
+|.++||.||||+|-.-+|..
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999988999999999
No 496
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA; InterPro: IPR005895 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the cytochrome c biogenesis protein encoded by ccmA in bacteria and one arabidopsis protein, possibly encoded by an organelle. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The post-translational pathway includes the transport of a heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which functions as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.; GO: 0005215 transporter activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=95.31 E-value=0.015 Score=36.77 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 97299998889999899999999
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLL 36 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~ 36 (222)
-|-.++|.||.|+|||||-+-|.
T Consensus 25 aGe~l~v~GpNG~GKTtLLR~LA 47 (204)
T TIGR01189 25 AGEALQVEGPNGIGKTTLLRILA 47 (204)
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 78278986069873578999998
No 497
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.016 Score=36.51 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9729999888999989999999974
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
.|.+..|.||.|+||+||.+.|.-.
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8727999888986588899986176
No 498
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.30 E-value=0.016 Score=36.47 Aligned_cols=48 Identities=23% Similarity=0.501 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCC--CCCCCCC-------CCCCCCCH
Q ss_conf 999888999989999999974898059982110798--9985468-------75222379
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVR--RPNEVDG-------KDYYFLSL 68 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~--R~gE~~G-------~dY~Fvs~ 68 (222)
+.|.||+|.|||||++-+.+.. +..+.-|+=|. |||..-| .|=.||++
T Consensus 33 ~LL~GPPGLGKTTLA~IiA~Em---g~~l~iTsGP~L~kPgDlaaiLt~L~~gDVLFIDE 89 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDE 89 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEECCH
T ss_conf 6631756874678999999983---89326740675547578999997056896310125
No 499
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.048 Score=33.52 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=20.1
Q ss_pred CCCEE---EEEECCCCCCHHHHHHHHHH
Q ss_conf 79729---99988899998999999997
Q gi|255764507|r 13 HRGMM---LIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 13 ~r~~i---ivl~GpsG~GK~tl~~~L~~ 37 (222)
.++++ ++++||.|+||++++..+.+
T Consensus 17 ~~~rl~HA~Lf~G~~G~GK~~lA~~~A~ 44 (328)
T PRK05707 17 GRGRHAHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7798220464479998679999999999
No 500
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.27 E-value=0.018 Score=36.24 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998889999899999999748
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCD 39 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~ 39 (222)
.+++.||||+||+.|++.|.+..
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l 27 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELL 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988989989999999999996
Done!