RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(222 letters)
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 288 bits (739), Expect = 9e-79
Identities = 93/208 (44%), Positives = 136/208 (65%), Gaps = 4/208 (1%)
Query: 12 NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRF 71
RG+++++S PSG GKST+ + LL+ D N ++S+S TTR RP EVDG DY+F+S F
Sbjct: 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEF 61
Query: 72 NELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSF 131
E+ + F+E AEV GN+YGT R P+EE ++ GKD+L +IDWQGA+ + K+M + +S
Sbjct: 62 EEMIENGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMP-DAVSI 120
Query: 132 FILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSI 191
FILPP+++EL RL R + +E + RL A EI YDYV++NDDL+ +L
Sbjct: 121 FILPPSLEELERRLRGRG---TDSEEVIARRLAKAREEIAHASEYDYVIVNDDLDTALEE 177
Query: 192 LKSVIEVERIRRHRLKNGIGGFVGKLLK 219
LK++I ER+RR R + + +LL
Sbjct: 178 LKAIIRAERLRRSRQQQRHAELIEELLA 205
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP.
Length = 180
Score = 246 bits (631), Expect = 3e-66
Identities = 87/182 (47%), Positives = 125/182 (68%), Gaps = 4/182 (2%)
Query: 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74
G++++IS PSGVGKST+ + LL+ D N + SIS TTR RP EVDG DY+F+S F E+
Sbjct: 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEM 60
Query: 75 KKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFIL 134
A F+E AEVHGN+YGT + P+EE ++ GKD+L +ID QGA+ + K+ + +S FIL
Sbjct: 61 IAAGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKF-PDAVSIFIL 119
Query: 135 PPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILKS 194
PP+++EL RL R + +E ++ RL A EI + +DYV++NDDLE ++ LKS
Sbjct: 120 PPSLEELERRLRKR---GTDSEEVIERRLAKAKKEIAHADEFDYVIVNDDLEKAVEELKS 176
Query: 195 VI 196
+I
Sbjct: 177 II 178
>gnl|CDD|128386 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 184
Score = 157 bits (398), Expect = 3e-39
Identities = 73/188 (38%), Positives = 109/188 (57%), Gaps = 5/188 (2%)
Query: 14 RGMMLIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVRRPNEVDGKDYYFLSLSRFN 72
+++S PSGVGK T+ L++ + FE +S TTR RP EV+G DY+F+S F
Sbjct: 1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFE 60
Query: 73 ELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFF 132
+ K+ F+E E GN+YGT ++ I + +GK L DID QG + L K + F
Sbjct: 61 DDIKSGLFLEWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQ-LYPIVIF 119
Query: 133 ILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSIL 192
I PP+ +EL RL R E E++Q RL A E +++ +DYV++NDDLE++ L
Sbjct: 120 IAPPSSEELERRLRGR---GTETAERIQKRLAAAQKEAQEYHLFDYVIVNDDLEDAYEEL 176
Query: 193 KSVIEVER 200
K ++E E+
Sbjct: 177 KEILEAEQ 184
>gnl|CDD|184809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 143 bits (363), Expect = 3e-35
Identities = 65/194 (33%), Positives = 116/194 (59%), Gaps = 6/194 (3%)
Query: 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE 73
+ ++++IS PSGVGK + + + F ++ TTR +RP E+DG DY+F++ F E
Sbjct: 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFRE 71
Query: 74 LKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFI 133
+ N +E AEV+GN+YG + P+ + ++ G+D++ +D QGA ++ + + V F+
Sbjct: 72 MISQNELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVF-IFL 130
Query: 134 LPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLIN--DDLENSLSI 191
PP+M EL RL LR E E+++ RL A E+++ +DYV++N D L+ +++
Sbjct: 131 APPSMDELTRRLELR---RTESPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQ 187
Query: 192 LKSVIEVERIRRHR 205
+ ++I E+ R H
Sbjct: 188 IMAIISAEKSRVHP 201
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 142 bits (359), Expect = 7e-35
Identities = 70/180 (38%), Positives = 112/180 (62%), Gaps = 3/180 (1%)
Query: 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
+ IISS +G GKSTI + LL+ +F SIS TTR RP + +GK Y+FL++ F +
Sbjct: 6 LFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIA 65
Query: 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
F+E AEVH N+YGT + IE+ +G+ + DID QGA+ + ++ +++ FI PP
Sbjct: 66 DGEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPP 125
Query: 137 TMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILKSVI 196
+ +E RL R ++E EK R++N E+ + +DY +INDDLE++++ L+++I
Sbjct: 126 SEEEWEERLIHRGTDSEESIEK---RIENGIIELDEANEFDYKIINDDLEDAIADLEAII 182
>gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 123 bits (309), Expect = 5e-29
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 18 LIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
++IS PSGVGK T+ L+K F S+S TTR R E DG Y+F S + K
Sbjct: 138 IVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIK 197
Query: 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
F+E A VHGN YGT + +E GK + DID QGA+++ + + FI PP
Sbjct: 198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSV-RASSLEAIFIFICPP 256
Query: 137 TMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWE---FYDYVLINDDLENSLSILK 193
+M+EL RL R E +E++Q RL+NA +E+++ + +D++L ND+LE LK
Sbjct: 257 SMEELEKRLRARGT---ETEEQIQKRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLK 313
Query: 194 SVI 196
++
Sbjct: 314 KLL 316
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in E.
coli shows considerable homology to guanylate kinases
(EC 2.7.4.8), and has actually been shown to act as a
ribose 1,5-bisphosphokinase (PRPP forming). This
suggests an analogous kinase reaction for phosphonate
metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 37.7 bits (88), Expect = 0.002
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 15 GMMLIISSPSGVGKSTI---ARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRF 71
G ++ + PSG GK T+ AR L D V TR P G+++ LS F
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITR---PASAGGENHIALSTEEF 57
Query: 72 NELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDML 109
+ + AF + HG YG + I++ + G ++
Sbjct: 58 DHREDGGAFALSWQAHGLSYGIPAE-IDQWLEAGDVVV 94
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 32.3 bits (73), Expect = 0.10
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 18 LIISSPSGVGKSTIAR---HLLKCDQNFEMSISVTT---RVRRPNEVDGKDYYFLSLSRF 71
++I P G GK+T+AR L + I V + S S
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGE 64
Query: 72 NELKKANAFIEK 83
L+ A A K
Sbjct: 65 LRLRLALALARK 76
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 31.6 bits (72), Expect = 0.15
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 13 HRGMMLIISSPSGVGKSTIARHLLKC 38
+ ++I SG GK+T+A L
Sbjct: 13 GGMITVLIDGRSGSGKTTLAGALAAR 38
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 31.8 bits (73), Expect = 0.16
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 23 PSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGK 61
SGVGKST+ LL + T VR E D K
Sbjct: 203 SSGVGKSTLVNALLGEE---VQK---TGAVR---EDDSK 232
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 31.1 bits (71), Expect = 0.22
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 1 MNRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHL 35
L L R + +++ PSGVGKS++ L
Sbjct: 158 ETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRL 192
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 30.8 bits (69), Expect = 0.32
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
H G M+ + PSG GKST+ RHL
Sbjct: 28 HHGEMVALLGPSGSGKSTLLRHL 50
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 30.5 bits (70), Expect = 0.36
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 16 MMLIISSPSGVGKSTIARHL 35
M++ IS P G GK+T+AR L
Sbjct: 1 MIITISGPPGSGKTTVARLL 20
>gnl|CDD|181191 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 30.2 bits (69), Expect = 0.42
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 25 GVGKSTIARHLLKC 38
GVGK+TIAR L K
Sbjct: 48 GVGKTTIARLLAKG 61
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number
of bacterial species have operons, typically about 14
genes in size, with genes for ATP-dependent transport
of phosphonates, degradation, and regulation of the
expression of the system. Members of this protein
family are the ATP-binding cassette component of
tripartite ABC transporters of phosphonates.
Length = 243
Score = 30.0 bits (68), Expect = 0.49
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
+ G + I PSG GKST+ R +
Sbjct: 26 NPGEFVAIIGPSGAGKSTLLRCI 48
>gnl|CDD|180177 PRK05636, PRK05636, replicative DNA helicase; Provisional.
Length = 505
Score = 29.8 bits (67), Expect = 0.53
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 23/92 (25%)
Query: 13 HRGMMLIISSPSGVGKSTIARHLLKCDQ----------NFEMS--------ISVTTRVR- 53
G M+I+++ GVGKST+A ++ + EMS +S VR
Sbjct: 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRL 322
Query: 54 ---RPNEVDGKDYYFLSLSRFNELKKANAFIE 82
R ++D + L R ++ +A FI+
Sbjct: 323 SDMRGGKMDEDAWEKLV-QRLGKIAQAPIFID 353
>gnl|CDD|161848 TIGR00381, cdhD, CO dehydrogenase/acetyl-CoA synthase, delta
subunit. This is the small subunit of a heterodimer
which catalyzes the reaction CO + H2O + Acceptor = CO2 +
Reduced acceptor and is involved in the synthesis of
acetyl-CoA from CO2 and H2.
Length = 389
Score = 29.5 bits (66), Expect = 0.62
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 111 DIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQED 155
D+D++ N K+ G VLS+ I+ MQ+ +R L+ D
Sbjct: 226 DLDYEKIANAAKKYGHVVLSWTIMDINMQKTLNRYLLKRGLMPRD 270
>gnl|CDD|183453 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 29.7 bits (67), Expect = 0.62
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 17 MLIISSPSGVGKSTIARHLLK 37
+++I S SG+GKSTIA L +
Sbjct: 6 VILIGSASGIGKSTIASELAR 26
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 29.5 bits (67), Expect = 0.72
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 7 FPLTVNHRGMMLIISSPSGVGKSTIAR 33
LT+N+ G L + PSG GK+T+ R
Sbjct: 33 LDLTINN-GEFLTLLGPSGCGKTTVLR 58
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 28.5 bits (64), Expect = 1.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 16 MMLIISSPSGVGKSTIARHL 35
M++ IS P G GK+T+A+ L
Sbjct: 1 MIITISGPPGSGKTTVAKIL 20
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important
residue (active site in E.coli) is residue 100 of the
seed alignment.
Length = 184
Score = 28.2 bits (63), Expect = 1.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 13 HRGMMLIISSPSGVGKSTIARHLLK 37
HRG+++ ++ SG GKSTIA L K
Sbjct: 16 HRGVVIWLTGLSGSGKSTIANALEK 40
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors.
Length = 217
Score = 28.2 bits (63), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 14 RGMMLIISSPSGVGKSTIARHL 35
M++ I PSG GKST+A+ +
Sbjct: 1 MAMIIAIDGPSGAGKSTVAKAV 22
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 27.8 bits (63), Expect = 2.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 14 RGMMLIISSPSGVGKSTIARHL 35
+G +++ G GKSTI R L
Sbjct: 3 KGPNIVLIGFMGAGKSTIGRLL 24
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 139
Score = 28.0 bits (63), Expect = 2.2
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 18 LIISSPSGVGKSTIARHLLK--CDQNFEM 44
+++ P G GKS +A L ++
Sbjct: 2 VLLVGPPGTGKSELAERLAAALSNRPVFY 30
>gnl|CDD|183730 PRK12765, PRK12765, flagellar capping protein; Provisional.
Length = 595
Score = 27.9 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 154 EDKEKVQLRLQNAYSEI-KKWEFYDYVLINDDLENSLSILKSVIEVE 199
KE Q + Y + KW YD ++ LE S LK++I
Sbjct: 546 TSKESTQELIDTKYETMANKWLQYDSIIAK--LEQQFSTLKNMINAA 590
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 27.9 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 2 NRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHL 35
N +L+ L + G + I P+G+GK+T + L
Sbjct: 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKIL 119
>gnl|CDD|179218 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 451
Score = 27.8 bits (63), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 14 RGMM-LIISSP-SGVGKSTIA 32
M L+I++P SG GK+T+
Sbjct: 1 MRMPALVIAAPASGSGKTTVT 21
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein
PhnL. Members of this family are the PhnL protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a
transporter per se.
Length = 224
Score = 27.7 bits (62), Expect = 2.3
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 9 LTVNHRGMMLIISSPSGVGKSTIARHL 35
LTVN G + +S PSG GKST+ + L
Sbjct: 29 LTVN-AGECVALSGPSGAGKSTLLKSL 54
>gnl|CDD|184924 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 27.7 bits (61), Expect = 2.6
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 25 GVGKSTIARHLLKCDQNFEMSISVT 49
GVGK+TIAR L KC N E ++ T
Sbjct: 47 GVGKTTIARILAKC-LNCETGVTST 70
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 27.6 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
RG L + SG GKST+AR L
Sbjct: 39 ERGKTLAVVGESGCGKSTLARLL 61
>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 367
Score = 27.5 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 12 NHRGMMLIISSPSGVGKSTIARHLLK 37
NH L+ P GVGK+T AR L +
Sbjct: 36 NHLAQALLFCGPRGVGKTTCARILAR 61
>gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed.
Length = 172
Score = 27.4 bits (61), Expect = 3.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 14 RGMMLIISSPSGVGKSTIARHLLK 37
R + L+ P G GKSTI R L +
Sbjct: 5 RNIFLV--GPMGAGKSTIGRQLAQ 26
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 27.2 bits (61), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 7 FPLTVNHRGMMLIISSPSGVGKSTI 31
F LTV RG + I PSG GKST+
Sbjct: 18 FDLTVE-RGERVAILGPSGAGKSTL 41
>gnl|CDD|177855 PLN02205, PLN02205, alpha,alpha-trehalose-phosphate synthase
[UDP-forming].
Length = 854
Score = 27.3 bits (60), Expect = 3.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 8 PLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMS 45
P+TV G ++ P GV K +A+ LL Q M
Sbjct: 744 PVTVK-SGQNIVEVKPQGVSKGLVAKRLLSIMQERGML 780
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 27.2 bits (60), Expect = 3.9
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 23 PSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIE 82
P+G GKSTIAR LL I+V P+ + +F+ L E
Sbjct: 38 PNGAGKSTIARMLLGMISPDRGKITVLGE-PVPSRARLARVAIGVVPQFDNLDPEFTVRE 96
Query: 83 KAEVHGNFYGTLRDPIEETI 102
V G ++G IE I
Sbjct: 97 NLLVFGRYFGMSTREIEAVI 116
>gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 27.1 bits (60), Expect = 3.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 12 NHRGMMLIISSPSGVGKSTIARHLLK 37
+ +++IS P+G GKS +A L K
Sbjct: 18 TKKEKVIVISGPTGAGKSRLALELAK 43
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 27.1 bits (60), Expect = 3.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 15 GMMLIISSPSGVGKSTIARHLLK 37
+++ I P+GVGKS+++R L +
Sbjct: 1 MIIVAIDGPAGVGKSSVSRALAQ 23
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 26.9 bits (60), Expect = 4.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 15 GMMLIISSPSGVGKSTIARHLL 36
G L I PSG GKST+AR ++
Sbjct: 344 GEALAIIGPSGSGKSTLARLIV 365
>gnl|CDD|150077 pfam09287, CEP1-DNA_bind, CEP-1, DNA binding. Members of this
family of DNA-binding domains are found the
transcription factor CEP-1. They adopt a beta sandwich
structure, with nine strands in two beta-sheets, in a
Greek-key topology.
Length = 196
Score = 27.0 bits (59), Expect = 4.1
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 96 DPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQED 155
D +++ ++K DM F I + + L +MG V + S LSLR + + D
Sbjct: 7 DVLKQKVAKSSDMAFAISSEHEKYLWTKMGCLVPIQVKWKLDKRHFNSNLSLRIRFVKYD 66
Query: 156 -KEKVQLRLQNAYSEIKK 172
KE V+ ++N S++ K
Sbjct: 67 KKENVEYAIRNPRSDVMK 84
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 27.0 bits (61), Expect = 4.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 23 PSGVGKSTIAR 33
P+G GK T+A+
Sbjct: 12 PAGSGKGTVAK 22
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 26.8 bits (60), Expect = 4.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 7 FPLTVNHRGMMLIISSPSGVGKSTIAR 33
F LT+ G + + SG GKSTIA+
Sbjct: 498 FSLTLQP-GQRVALVGGSGSGKSTIAK 523
>gnl|CDD|161993 TIGR00678, holB, DNA polymerase III, delta' subunit. At position
126-127 of the seed alignment, this family lacks the HM
motif of gamma/tau; at 132 it has a near-invariant A
vs. an invariant F in gamma/tau.
Length = 188
Score = 26.8 bits (60), Expect = 4.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 18 LIISSPSGVGKSTIARHLLK 37
+ + P GVGK +A L K
Sbjct: 17 YLFAGPEGVGKELLALALAK 36
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 27.0 bits (60), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 7 FPLTVNHRGMMLIISSPSGVGKSTIARHLLK 37
LTV G + + PSG GKST+ + LL+
Sbjct: 359 LNLTVR-PGETVALVGPSGAGKSTLFQLLLR 388
>gnl|CDD|161784 TIGR00238, TIGR00238, KamA family protein. Note that the E. coli
homolog was expressed in E. coli and purified and found
not to display display lysine 2,3-aminomutase activity.
Active site residues are found in 100 residue extension
in B. subtilis. Name changed to KamA family protein.
Length = 331
Score = 26.7 bits (59), Expect = 4.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 142 CSRLSLRAKKNQEDKEKVQLRLQ--NAYSEIKKWEFY--DYVLIND-DLENSLSILKSVI 196
C R K+N +K+K Q L + EI + D ++ D +LE L L+ +
Sbjct: 130 CFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIP 189
Query: 197 EVERIRRH 204
+ R+R
Sbjct: 190 HLVRLRIG 197
>gnl|CDD|162188 TIGR01070, mutS1, DNA mismatch repair protein MutS.
Length = 840
Score = 26.7 bits (59), Expect = 4.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 8 PLTVNHRGMMLIISSPSGVGKSTIARHL 35
L + H ML+I+ P+ GKST R
Sbjct: 585 DLEMAHNRRMLLITGPNMGGKSTYMRQT 612
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only
if the ThiB and ThiP subunits are also found.
Length = 213
Score = 26.7 bits (59), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 7 FPLTVNHRGMMLIISSPSGVGKSTI 31
F L V G ++ I PSG GKST+
Sbjct: 17 FDLNVA-DGEIVAIMGPSGAGKSTL 40
>gnl|CDD|180644 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau;
Validated.
Length = 563
Score = 26.7 bits (59), Expect = 4.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 19 IISSPSGVGKSTIARHLLKC 38
I S P GVGK++ AR +C
Sbjct: 42 IFSGPRGVGKTSSARAFARC 61
>gnl|CDD|131458 TIGR02405, trehalos_R_Ecol, trehalose operon repressor,
proteobacterial. This family consists of repressors of
the LacI family typically associated with trehalose
utilization operons. Trehalose is imported as
trehalose-6-phosphate and then hydrolyzed by
alpha,alpha-phosphotrehalase to glucose and
glucose-6-P. This family includes repressors mostly
from Gammaproteobacteria and does not include the GntR
family TreR of Bacillus subtilis.
Length = 311
Score = 26.8 bits (59), Expect = 4.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 20 ISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVR 53
I+ +GVGKST++R L N E +S+ TR R
Sbjct: 7 IARLAGVGKSTVSRVL-----NNEPKVSIETRER 35
>gnl|CDD|178749 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 26.8 bits (59), Expect = 4.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 17 MLIISSPSGVGKSTIARHL 35
M+ I SG+GK+TIAR L
Sbjct: 209 MVGIWGSSGIGKTTIARAL 227
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 26.6 bits (60), Expect = 4.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 23 PSGVGKSTIAR 33
P G GK+T+AR
Sbjct: 44 PPGTGKTTLAR 54
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728).
Length = 262
Score = 26.7 bits (59), Expect = 5.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 23 PSGVGKSTIARHLLKC 38
P+G GK+T+A H+ +
Sbjct: 29 PAGTGKTTLAMHVARK 44
>gnl|CDD|184917 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 26.7 bits (59), Expect = 5.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 19 IISSPSGVGKSTIARHLLK 37
I + P G GK+TIAR L K
Sbjct: 42 IFAGPRGTGKTTIARILAK 60
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 26.5 bits (59), Expect = 5.1
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 15 GMMLIISSPSGVGKSTIAR--HLLKCDQNFEMSI 46
G L++ PSG GKS++ R +LL+ ++ ++I
Sbjct: 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
>gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1034
Score = 26.5 bits (59), Expect = 5.3
Identities = 17/50 (34%), Positives = 20/50 (40%)
Query: 136 PTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDL 185
P ++EL L K+ Q RL S I F DY LI DL
Sbjct: 237 PAVEELRELAELGLKEKGLWSSPYQERLDKELSVIHDMGFDDYFLIVWDL 286
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 26.7 bits (60), Expect = 5.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 19 IISSPSGVGKSTI 31
+++ SGVGKST+
Sbjct: 168 VLAGQSGVGKSTL 180
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 26.4 bits (58), Expect = 5.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 15 GMMLIISSPSGVGKSTIARHLLK 37
G I P GVGK+TIAR L K
Sbjct: 40 GHAYIFFGPRGVGKTTIARILAK 62
>gnl|CDD|182699 PRK10751, PRK10751, molybdopterin-guanine dinucleotide
biosynthesis protein B; Provisional.
Length = 173
Score = 26.6 bits (59), Expect = 5.8
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD--GKDYYFLSLSRFNEL 74
+L I++ SG GK+T+ + L+ + + +VD GKD Y EL
Sbjct: 8 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSY--------EL 59
Query: 75 KKANA 79
+KA A
Sbjct: 60 RKAGA 64
>gnl|CDD|162839 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau.
This model represents the well-conserved first ~ 365
amino acids of the translation of the dnaX gene. The
full-length product of the dnaX gene in the model
bacterium E. coli is the DNA polymerase III tau
subunit. A translational frameshift leads to early
termination and a truncated protein subunit gamma,
about 1/3 shorter than tau and present in roughly equal
amounts. This frameshift mechanism is not necessarily
universal for species with DNA polymerase III but
appears conserved in the exterme thermophile Thermus
thermophilis.
Length = 355
Score = 26.4 bits (59), Expect = 6.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 21 SSPSGVGKSTIARHLLKC 38
S P G GK++IAR K
Sbjct: 42 SGPRGTGKTSIARIFAKA 59
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 26.3 bits (59), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 15 GMMLIISSPSGVGKSTIAR 33
G +++ PSG GKST+ R
Sbjct: 30 GEFIVLVGPSGCGKSTLLR 48
>gnl|CDD|163076 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6
family in eukaryotes. Several members may be found in
genome and interact with each other.
Length = 365
Score = 26.4 bits (59), Expect = 6.4
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 18 LIISSPSGVGKSTIARHLLK 37
+ I +G GK+ + ++++K
Sbjct: 43 VFIYGKTGTGKTAVTKYVMK 62
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA;
Provisional.
Length = 318
Score = 26.2 bits (58), Expect = 6.6
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 25 GVGKSTIARHLLKCDQNFEMSI 46
G GK+T+ RH+L +++++
Sbjct: 14 GAGKTTLLRHILNEQHGYKIAV 35
>gnl|CDD|181905 PRK09492, treR, trehalose repressor; Provisional.
Length = 315
Score = 26.4 bits (59), Expect = 6.6
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 24 SGVGKSTIARHLLKCDQNFEMSISVTTRVR 53
SGVGKST++R L N E +S TR R
Sbjct: 14 SGVGKSTVSRVL-----NNESGVSEETRER 38
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 26.2 bits (58), Expect = 6.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 14 RGMMLIISSPSGVGKSTIAR 33
+G M+ + PSG GK+T+ R
Sbjct: 31 QGTMVTLLGPSGCGKTTVLR 50
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 26.2 bits (58), Expect = 6.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 2 NRDRLFPLTVNH------RGMMLIISSPSGVGKSTIARHL 35
N + L ++ +G L+I +G GKSTIA+H+
Sbjct: 17 NEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHM 56
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 26.3 bits (58), Expect = 6.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 23 PSGVGKSTIARHLL 36
P+G GKSTIAR +L
Sbjct: 75 PNGAGKSTIARMIL 88
>gnl|CDD|177379 PHA02544, 44, clamp loader, small subunit; Provisional.
Length = 316
Score = 26.1 bits (58), Expect = 6.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 17 MLIISSPSGVGKSTIARHL 35
ML+ S G GK+T+A+ L
Sbjct: 45 MLLHSPSPGTGKTTVAKAL 63
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 26.2 bits (58), Expect = 7.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 9 LTVNHRGMMLIISSPSGVGKST----IARH 34
LTV +G + I + SGVGKST IAR+
Sbjct: 158 LTVG-KGQRIGIFAGSGVGKSTLLGMIARN 186
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 26.1 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 15 GMMLIISSPSGVGKSTIARHLL 36
G + + PSG GKST+ LL
Sbjct: 348 GERVALVGPSGAGKSTLLNLLL 369
>gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason.
Length = 210
Score = 26.0 bits (58), Expect = 7.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 17 MLIISSPSGVGKSTIARHL 35
L++ P G GK T A+ +
Sbjct: 1 RLVLLGPPGSGKGTQAKRI 19
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 26.1 bits (58), Expect = 7.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 20 ISSPSGVGKSTIARHLL 36
I PSG GKST+ R LL
Sbjct: 484 IVGPSGSGKSTLLRLLL 500
>gnl|CDD|151555 pfam11111, CENP-M, Centromere protein M (CENP-M). The prime
candidate for specifying centromere identity is the
array of nucleosomes assembles with CENP-A. CENP-A
recruits a nucleosome associated complex (NAC)
comprised of CENP-M along with two other proteins.
Assembly of the CENP-A NAC at centromeres is partly
dependant on CENP-M. The CENP-A NAC is essential, as
disruption of the complex causes errors of chromosome
alignment and segregation that preclude cell survival.
Length = 176
Score = 26.3 bits (58), Expect = 7.4
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 10 TVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD 59
+N ++L+ G + +A +LK D++FE++I + T + P+E +
Sbjct: 12 ELNTATVLLV--GTEGALQQQLAEAMLKEDKDFELNIHLATSLPLPSERN 59
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 26.0 bits (57), Expect = 7.5
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRP 55
+G +L + P+G GK+T+ R +L + ++ V
Sbjct: 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK 46
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 25.9 bits (57), Expect = 7.9
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 9 LTVNHRGMMLIISSPSGVGKSTIAR 33
LTV RG + I PSG+GK+T+ R
Sbjct: 28 LTVP-RGKITAIMGPSGIGKTTLLR 51
>gnl|CDD|179793 PRK04220, PRK04220, 2-phosphoglycerate kinase; Provisional.
Length = 301
Score = 26.1 bits (58), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 16 MMLIISSPSGVGKSTIA 32
++++I SGVG STIA
Sbjct: 93 IIILIGGASGVGTSTIA 109
>gnl|CDD|185483 PTZ00154, PTZ00154, 40S ribosomal protein S17; Provisional.
Length = 134
Score = 25.8 bits (57), Expect = 8.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 193 KSVIEVERIRRHRLKNGIGGFVGKLLK 219
K V EV I RL+N I GFV L+K
Sbjct: 33 KIVEEVAIIPSKRLRNKIAGFVTHLMK 59
>gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit. A number of
genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other
genes involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 25.8 bits (57), Expect = 9.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 18 LIISSPSGVGKSTIARHL 35
++I G KST AR L
Sbjct: 28 VLIRGEKGTAKSTAARGL 45
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 26.0 bits (58), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 178 YVLINDDLENSLSILKSVIEV 198
YVL +DL+ ++ ILK +E
Sbjct: 372 YVLNEEDLKRAMEILKEALEK 392
>gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 25.8 bits (58), Expect = 9.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 17 MLIISSPSGVGKSTIAR 33
++I++ SG GKS R
Sbjct: 8 LVIVTGLSGAGKSVALR 24
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 25.8 bits (57), Expect = 9.6
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 15 GMMLIISSPSGVGKST----IARH 34
G ML I P+G GKST I RH
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRH 364
>gnl|CDD|181111 PRK07773, PRK07773, replicative DNA helicase; Validated.
Length = 886
Score = 25.9 bits (57), Expect = 9.8
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 13 HRGMMLIISSPSGVGKSTIA 32
H G ++I+++ +GK+T
Sbjct: 215 HPGQLIIVAARPSMGKTTFG 234
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.137 0.392
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,648,504
Number of extensions: 225743
Number of successful extensions: 875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 125
Length of query: 222
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,049,753
Effective search space: 534567396
Effective search space used: 534567396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)