BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(222 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 222
Score = 458 bits (1179), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MNRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDG 60
MNRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDG
Sbjct: 1 MNRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDG 60
Query: 61 KDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL 120
KDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL
Sbjct: 61 KDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL 120
Query: 121 HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVL 180
HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVL
Sbjct: 121 HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVL 180
Query: 181 INDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEEL 222
INDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEEL
Sbjct: 181 INDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEEL 222
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 82.0 bits (201), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%)
Query: 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
+ ++ SGVGK+TIA+ ++ + M + VTTR R +E DY F+S S+F K
Sbjct: 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63
Query: 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
FIE +V +YG L++ I + G D+L + QG L K V S FI PP
Sbjct: 64 TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123
Query: 137 TMQELCSR 144
+ EL R
Sbjct: 124 SEAELIQR 131
>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 185
Score = 80.9 bits (198), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 11/190 (5%)
Query: 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
+ ++ SGVG++TIA+ ++ + M + VTTR R +E DY F+S S+F K
Sbjct: 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63
Query: 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
FIE +V +YG L++ I + G D+L + QG L K V S FI PP
Sbjct: 64 TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123
Query: 137 TMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILKSVI 196
+ EL R R K+ ++ + L K Y + ++N+ L + + +
Sbjct: 124 SEAELIQR---RIKRREDTPFNLDPDL------FGKNHSYSFTIVNNHLPTACRQVGFIR 174
Query: 197 EVERIRRHRL 206
E +++HR+
Sbjct: 175 EF--VKQHRI 182
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 257
Score = 28.1 bits (61), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 14 RGMMLIISSPSGVGKSTIAR 33
RG +II+ PSG GKST+ R
Sbjct: 42 RGERVIIAGPSGSGKSTLIR 61
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 27.7 bits (60), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 10 TVNHRGMMLIISSPSGVGKSTIARHLLKC 38
+ ++G++L P GVGK+++A+ + K
Sbjct: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA 389
>gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 185
Score = 26.6 bits (57), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 163 LQNAYSEIKKWEFYDYVLINDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEE 221
L+N +S +W Y Y +N L SLS+ +V +E +R +G+ F+ L KEE
Sbjct: 39 LRNQFS---RWSVYVYPDLNKKLCFSLSVPVTVEPLEGVR-----HGVNFFIISLKKEE 89
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 437
Score = 25.8 bits (55), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 3 RDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKC 38
RD L P + ++L+ P+GVGK+ I+R L +
Sbjct: 48 RDELMP-----KNILLV--GPTGVGKTAISRRLARL 76
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 25.4 bits (54), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 7 FPLTVN-----HRGMMLIISSPSGVGKSTI 31
FP+ N +G ++ + SPSG GKSTI
Sbjct: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTI 52
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 24.6 bits (52), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 20 ISSPSGVGKSTIARHLLKCDQNFEMSISVTT----------------RVRRPNEVDGKDY 63
I P+G GKSTI R + D+ + + T + + N ++G +
Sbjct: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
Query: 64 YFLSLSRFNEL 74
L R+NEL
Sbjct: 97 KQAILDRYNEL 107
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 19 IISSPSGVGKSTIARHL 35
+ S P+GVGK+ I++ L
Sbjct: 511 VFSGPTGVGKTEISKQL 527
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 23.5 bits (49), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 15 GMMLIISSPSGVGKSTIARHLLK 37
G M + PSG GKSTI L++
Sbjct: 379 GKMTALVGPSGSGKSTIINLLMR 401
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 23.1 bits (48), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 23 PSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYY 64
PSG GKST R L + ++ + + + +DGK+ Y
Sbjct: 40 PSGCGKSTFLRCLNRMNETIDNCVFTGEII-----LDGKNIY 76
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 23.1 bits (48), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 15 GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74
G ++I S GKS++ L K D I TTR ++D + Y + +S +
Sbjct: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGI 277
Query: 75 KKANAFIEKAEVHGNF 90
++ + +EK + F
Sbjct: 278 RETDDIVEKEGIKRTF 293
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 22.7 bits (47), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 18 LIISSPSGVGKSTI 31
++I PSG GKST+
Sbjct: 28 IVILGPSGAGKSTL 41
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 22.3 bits (46), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 14 RGMMLIISSPSGVGKSTIARHL 35
+G +L++ SG GKST+ R +
Sbjct: 54 KGEILVLMGLSGAGKSTLLRSI 75
>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 837
Score = 22.3 bits (46), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 44 MSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETIS 103
MS VRR D+Y R K NA + N + L +++ +
Sbjct: 311 MSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLD 370
Query: 104 KGKDMLFDIDWQGAQNLHKQMGS--------NVLSFF-----ILPPTMQELCSRLSLRAK 150
+ L+++ W+ +++ QM S N+++ + L T LC L+
Sbjct: 371 SDQFQLYNLIWK--RSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVW 428
Query: 151 KNQEDKEK 158
+NQ D+EK
Sbjct: 429 ENQYDQEK 436
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 22.3 bits (46), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 24 SGVGKSTIARHLLK 37
SGVGKST+A+ L +
Sbjct: 392 SGVGKSTVAKLLYR 405
>gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 356
Score = 21.9 bits (45), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 19 IISSPSGVGKSTIARHLLKC 38
I+S+ +G+G T AR+L KC
Sbjct: 82 ILSAWAGLGYYTRARNLKKC 101
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 21.9 bits (45), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 12 NHRGMMLIISSPSGVGKSTIARHLLK 37
+HR ++++ +GVGK+T+ L K
Sbjct: 108 SHRPHVILVVGVNGVGKTTVIGKLSK 133
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,115
Number of Sequences: 1233
Number of extensions: 5743
Number of successful extensions: 42
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 22
length of query: 222
length of database: 328,796
effective HSP length: 71
effective length of query: 151
effective length of database: 241,253
effective search space: 36429203
effective search space used: 36429203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)