HHsearch alignment for GI: 255764508 and conserved domain: cd06259
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=99.97 E-value=6.1e-31 Score=221.05 Aligned_cols=148 Identities=30% Similarity=0.505 Sum_probs=130.7
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 58999625213777765554346820589999999999825200575338970688887788827999999997499987
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERD 146 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~ 146 (242)
T Consensus 1 daIvVLG~~~~~~~~~--------~~~~~R~~~a~~L~~~~~~~----~ii~sGg~~~~~~~~Ea~~~~~~l~~~gv~~~ 68 (150)
T cd06259 1 DAIVVLGGGVNGDGPS--------PILAERLDAAAELYRAGPAP----KLIVSGGQGPGEGYSEAEAMARYLIELGVPAE 68 (150)
T ss_pred CEEEECCCCCCCCCCC--------HHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 9899899987999989--------79999999999999819998----89995887999988999999999998599989
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 811110146657779999999762368640885345889999999997698--189984266443111375457889899
Q gi|255764508|r 147 DIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGI--NTKASCSDYLNAYYSIIPLSANFYLTE 224 (242)
Q Consensus 147 ~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi--~~~p~~~d~~~~~~~~~p~~~~l~~~~ 224 (242)
T Consensus 69 ~i~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVTs~~H~~Ra~~~~~~~~~~~~~~~~p~~~~~~~~-------~~~~~~ 141 (150)
T cd06259 69 AILLEDRSTNTYENARFSAELLRERGIRSVLLVTSAYHMPRALLIFRKAGLDVEVVPAPTDFYSLSS-------ALRLLR 141 (150)
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-------HHHHHH
T ss_conf 9683134777024599999999976998799999888999999999980998459868877613600-------466678
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|255764508|r 225 LALKEYIGI 233 (242)
Q Consensus 225 ~~~~E~ig~ 233 (242)
T Consensus 142 ~~~~E~~~~ 150 (150)
T cd06259 142 LALREYLGL 150 (150)
T ss_pred HHHHHHHCC
T ss_conf 999998569