Query gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs 121 out of 1521
Neff 8.2
Searched_HMMs 39220
Date Mon May 30 02:18:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764508.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10494 hypothetical protein; 100.0 0 0 363.2 26.0 207 23-241 40-252 (259)
2 pfam02698 DUF218 DUF218 domain 100.0 9.5E-32 2.4E-36 226.3 15.4 147 65-232 1-147 (148)
3 cd06259 YdcF-like YdcF-like. Y 100.0 6.1E-31 1.6E-35 221.1 15.2 148 67-233 1-150 (150)
4 COG1434 Uncharacterized conser 100.0 5.5E-28 1.4E-32 201.8 19.4 187 30-241 32-223 (223)
5 PRK10834 hypothetical protein; 99.9 1.7E-23 4.3E-28 172.6 20.4 155 58-238 37-191 (239)
6 COG2949 SanA Uncharacterized m 99.8 4.1E-19 1.1E-23 144.1 18.8 154 59-236 50-203 (235)
7 cd02509 GDP-M1P_Guanylyltransf 97.0 0.0081 2.1E-07 38.1 9.0 85 114-206 51-146 (274)
8 KOG4533 consensus 95.8 0.0089 2.3E-07 37.8 3.1 95 97-195 122-223 (317)
9 cd05015 SIS_PGI_1 Phosphogluco 89.9 1.6 4E-05 23.2 8.8 79 132-213 61-146 (158)
10 PRK10802 peptidoglycan-associa 88.4 1.6 4.1E-05 23.1 5.8 66 84-154 75-149 (173)
11 PRK00973 glucose-6-phosphate i 88.2 2 5.2E-05 22.5 6.8 123 61-205 67-199 (454)
12 COG0836 {ManC} Mannose-1-phosp 87.8 2 5.2E-05 22.5 6.0 68 114-189 52-121 (333)
13 cd01545 PBP1_SalR Ligand-bindi 86.5 2.6 6.5E-05 21.8 10.6 95 98-198 107-204 (270)
14 cd06285 PBP1_LacI_like_7 Ligan 86.0 2.7 6.9E-05 21.7 7.8 95 99-199 105-201 (265)
15 TIGR00454 TIGR00454 conserved 85.0 0.76 1.9E-05 25.3 2.6 85 97-191 31-116 (204)
16 TIGR02802 Pal_lipo peptidoglyc 84.9 2.9 7.4E-05 21.5 5.6 64 89-157 11-87 (104)
17 PRK00179 pgi glucose-6-phospha 84.8 3.1 7.8E-05 21.3 8.1 97 63-185 127-233 (525)
18 pfam04820 Trp_halogenase Trypt 84.4 3.2 8.1E-05 21.2 6.9 53 98-152 13-67 (457)
19 cd06273 PBP1_GntR_like_1 This 83.4 3.5 9E-05 20.9 8.4 95 100-199 108-204 (268)
20 PRK13609 diacylglycerol glucos 83.0 3.6 9.3E-05 20.8 5.8 21 131-151 155-175 (388)
21 cd06270 PBP1_GalS_like Ligand 82.3 3.9 9.8E-05 20.6 7.9 94 100-199 108-203 (268)
22 cd07185 OmpA_C-like Peptidogly 80.6 4.4 0.00011 20.3 5.5 63 88-155 12-83 (106)
23 PTZ00254 40S ribosomal protein 80.2 4.5 0.00012 20.2 9.4 132 93-241 54-188 (242)
24 COG2885 OmpA Outer membrane pr 80.1 4.5 0.00012 20.2 5.1 64 86-154 91-163 (190)
25 cd06271 PBP1_AglR_RafR_like Li 79.9 4.7 0.00012 20.1 8.4 94 99-199 111-207 (268)
26 COG2240 PdxK Pyridoxal/pyridox 79.7 4.7 0.00012 20.1 6.2 139 94-233 85-250 (281)
27 cd06290 PBP1_LacI_like_9 Ligan 79.3 4.9 0.00012 20.0 7.8 95 100-199 107-202 (265)
28 cd06288 PBP1_sucrose_transcrip 79.3 4.9 0.00012 20.0 9.7 97 98-199 106-203 (269)
29 PRK13608 diacylglycerol glucos 78.9 5 0.00013 19.9 5.7 58 131-188 155-217 (391)
30 TIGR02128 G6PI_arch bifunction 78.3 2.5 6.4E-05 21.9 3.3 116 61-215 22-141 (338)
31 cd06267 PBP1_LacI_sugar_bindin 77.8 5.4 0.00014 19.7 8.3 65 133-198 137-202 (264)
32 cd06284 PBP1_LacI_like_6 Ligan 76.5 5.8 0.00015 19.5 7.9 92 101-198 108-201 (267)
33 TIGR02177 PorB_KorB 2-oxoacid: 76.1 4.7 0.00012 20.1 4.1 80 65-154 27-110 (302)
34 cd06296 PBP1_CatR_like Ligand- 76.0 6 0.00015 19.4 10.9 96 98-199 107-204 (270)
35 cd01575 PBP1_GntR Ligand-bindi 75.2 6.3 0.00016 19.3 7.6 93 99-198 107-202 (268)
36 PRK10401 DNA-binding transcrip 74.8 6.5 0.00016 19.2 8.1 94 100-199 168-263 (346)
37 pfam01650 Peptidase_C13 Peptid 74.7 3.5 8.8E-05 21.0 3.2 14 170-183 147-160 (258)
38 cd06295 PBP1_CelR Ligand bindi 74.1 6.7 0.00017 19.1 7.9 92 102-199 119-212 (275)
39 cd06287 PBP1_LacI_like_8 Ligan 73.3 7 0.00018 19.0 7.4 91 102-199 112-204 (269)
40 cd06274 PBP1_FruR Ligand bindi 72.9 7.2 0.00018 18.9 7.9 96 98-199 106-204 (264)
41 PRK09330 cell division protein 72.9 2.7 6.8E-05 21.7 2.2 67 115-182 99-168 (387)
42 cd01574 PBP1_LacI Ligand-bindi 72.4 7.4 0.00019 18.8 7.2 93 98-198 106-199 (264)
43 cd06294 PBP1_ycjW_transcriptio 72.2 7.4 0.00019 18.8 10.8 95 100-199 114-209 (270)
44 TIGR02201 heptsyl_trn_III lipo 72.0 4.2 0.00011 20.4 3.1 72 127-200 164-243 (347)
45 TIGR01373 soxB sarcosine oxida 71.7 2.1 5.3E-05 22.4 1.5 25 52-76 17-41 (407)
46 PRK03868 glucose-6-phosphate i 71.5 7.7 0.0002 18.7 7.5 73 131-205 98-175 (409)
47 PRK10808 outer membrane protei 70.2 8.2 0.00021 18.5 5.5 85 86-172 232-330 (347)
48 cd06283 PBP1_RegR_EndR_KdgR_li 69.8 8.4 0.00021 18.5 10.3 67 132-199 137-204 (267)
49 PRK13018 cell division protein 69.7 4.2 0.00011 20.4 2.7 66 116-182 115-183 (387)
50 TIGR00065 ftsZ cell division p 68.9 1.8 4.7E-05 22.8 0.7 84 116-229 110-203 (365)
51 TIGR01479 GMP_PMI mannose-1-ph 68.6 5.7 0.00014 19.6 3.1 78 111-195 49-128 (478)
52 COG2102 Predicted ATPases of P 68.4 9 0.00023 18.3 9.7 74 124-200 41-116 (223)
53 cd06280 PBP1_LacI_like_4 Ligan 68.3 9 0.00023 18.3 7.7 64 132-199 134-198 (263)
54 COG0052 RpsB Ribosomal protein 68.2 9 0.00023 18.2 13.1 120 93-219 46-204 (252)
55 PRK10703 DNA-binding transcrip 67.3 9.4 0.00024 18.1 10.9 93 101-199 171-265 (335)
56 cd06289 PBP1_MalI_like Ligand- 67.1 9.5 0.00024 18.1 7.9 96 99-199 108-204 (268)
57 cd06272 PBP1_hexuronate_repres 66.0 10 0.00026 18.0 8.2 95 99-198 102-197 (261)
58 PRK11070 ssDNA exonuclease Rec 65.6 10 0.00026 17.9 6.8 68 128-200 309-383 (574)
59 PRK08674 bifunctional phosphog 65.6 10 0.00026 17.9 7.8 53 149-206 83-135 (328)
60 PRK07232 malic enzyme; Reviewe 64.7 4.6 0.00012 20.2 2.1 68 130-197 390-465 (753)
61 COG2266 GTP:adenosylcobinamide 63.7 11 0.00028 17.7 4.4 43 132-182 53-95 (177)
62 PRK12862 malic enzyme; Reviewe 63.6 4.6 0.00012 20.2 1.9 68 130-197 396-471 (761)
63 PRK09526 lacI lac repressor; R 63.3 11 0.00029 17.6 8.1 93 100-199 173-266 (342)
64 cd06279 PBP1_LacI_like_3 Ligan 62.6 12 0.00029 17.6 5.9 66 133-198 154-220 (283)
65 COG1058 CinA Predicted nucleot 62.6 12 0.00029 17.6 4.4 43 92-139 45-87 (255)
66 PRK10076 pyruvate formate lyas 62.0 12 0.0003 17.5 8.1 39 73-121 39-77 (213)
67 PRK08384 thiamine biosynthesis 61.8 12 0.0003 17.5 6.1 67 132-200 192-259 (310)
68 TIGR02079 THD1 threonine dehyd 61.0 5.2 0.00013 19.8 1.8 75 61-160 296-372 (415)
69 cd06282 PBP1_GntR_like_2 Ligan 59.9 13 0.00033 17.3 8.0 93 99-199 107-202 (266)
70 cd06275 PBP1_PurR Ligand-bindi 59.8 13 0.00033 17.2 9.9 93 99-198 108-203 (269)
71 PRK10727 DNA-binding transcrip 59.7 13 0.00033 17.2 9.8 95 99-199 167-263 (342)
72 pfam10686 DUF2493 Protein of u 59.2 13 0.00034 17.2 6.0 45 93-145 16-60 (71)
73 COG1167 ARO8 Transcriptional r 58.7 13 0.00034 17.1 5.6 69 132-206 139-210 (459)
74 cd06281 PBP1_LacI_like_5 Ligan 58.2 14 0.00035 17.1 7.4 94 100-199 108-202 (269)
75 COG1099 Predicted metal-depend 57.8 14 0.00035 17.0 7.2 95 96-198 115-235 (254)
76 cd06292 PBP1_LacI_like_10 Liga 56.9 14 0.00037 16.9 7.5 93 99-199 113-207 (273)
77 cd06293 PBP1_LacI_like_11 Liga 56.9 14 0.00037 16.9 7.9 94 100-199 108-203 (269)
78 cd02201 FtsZ_type1 FtsZ is a G 56.8 11 0.00027 17.8 2.8 67 116-183 88-157 (304)
79 TIGR00644 recJ single-stranded 56.6 15 0.00037 16.9 6.4 103 92-207 43-147 (705)
80 PRK11145 pflA pyruvate formate 56.6 15 0.00037 16.9 8.9 22 99-120 87-108 (246)
81 TIGR02407 ectoine_ectB diamino 56.3 9.3 0.00024 18.2 2.4 11 174-184 126-136 (413)
82 PRK12653 fructose-6-phosphate 56.1 15 0.00038 16.8 5.1 55 149-207 134-191 (220)
83 COG0329 DapA Dihydrodipicolina 55.7 15 0.00038 16.8 5.6 18 127-144 84-101 (299)
84 cd02191 FtsZ FtsZ is a GTPase 55.6 9.7 0.00025 18.1 2.4 69 116-185 88-159 (303)
85 PRK11041 DNA-binding transcrip 54.7 16 0.0004 16.7 9.6 93 100-199 176-271 (341)
86 pfam08869 XisI XisI protein. T 54.7 7.7 0.0002 18.7 1.8 23 133-155 77-99 (110)
87 pfam02602 HEM4 Uroporphyrinoge 54.4 16 0.0004 16.7 10.0 19 175-193 168-186 (229)
88 KOG0622 consensus 54.3 11 0.00027 17.8 2.4 69 136-204 114-214 (448)
89 cd06298 PBP1_CcpA_like Ligand- 54.3 16 0.0004 16.7 9.2 94 99-199 107-203 (268)
90 pfam07788 DUF1626 Protein of u 54.0 16 0.00041 16.6 4.2 25 173-198 46-70 (70)
91 PRK03767 TrpR binding protein 54.0 16 0.00041 16.6 5.0 75 58-143 62-138 (200)
92 TIGR01361 DAHP_synth_Bsub phos 52.6 10 0.00025 18.0 2.1 133 69-216 53-214 (262)
93 TIGR02197 heptose_epim ADP-L-g 52.2 5.9 0.00015 19.5 0.9 59 128-200 65-127 (353)
94 TIGR00735 hisF imidazoleglycer 52.1 16 0.0004 16.7 3.0 20 112-131 256-275 (312)
95 COG0281 SfcA Malic enzyme [Ene 52.1 5.8 0.00015 19.5 0.8 76 45-153 158-233 (432)
96 TIGR03234 OH-pyruv-isom hydrox 51.7 17 0.00044 16.4 5.8 91 95-196 84-196 (254)
97 pfam00154 RecA recA bacterial 51.5 18 0.00045 16.4 3.8 51 129-181 88-138 (322)
98 cd06299 PBP1_LacI_like_13 Liga 51.0 18 0.00046 16.3 9.9 94 99-199 107-201 (265)
99 cd00983 recA RecA is a bacter 50.5 18 0.00046 16.3 3.9 51 129-181 91-141 (325)
100 PRK09967 putative outer membra 49.7 19 0.00048 16.2 4.6 68 81-153 55-132 (160)
101 PRK12861 malic enzyme; Reviewe 49.4 9 0.00023 18.3 1.4 69 130-198 391-472 (762)
102 COG2117 Predicted subunit of t 47.6 19 0.00048 16.2 2.8 13 98-110 15-27 (198)
103 TIGR02351 thiH thiazole biosyn 47.5 20 0.00052 16.0 3.0 21 185-205 146-166 (378)
104 TIGR01481 ccpA catabolite cont 47.5 20 0.00052 16.0 7.6 124 70-206 142-269 (332)
105 cd06277 PBP1_LacI_like_1 Ligan 47.5 20 0.00052 16.0 10.7 94 99-199 109-203 (268)
106 PRK10510 putative outer membra 47.0 21 0.00052 15.9 10.3 79 67-154 105-192 (219)
107 CHL00181 cbbX CbbX; Provisiona 46.1 21 0.00054 15.8 4.4 24 159-183 145-169 (287)
108 cd01544 PBP1_GalR Ligand-bindi 45.9 21 0.00054 15.8 9.0 93 100-199 104-205 (270)
109 KOG4038 consensus 45.1 8.6 0.00022 18.4 0.8 31 132-168 85-115 (150)
110 COG2022 ThiG Uncharacterized e 44.8 22 0.00057 15.7 5.4 73 131-206 58-140 (262)
111 cd01994 Alpha_ANH_like_IV This 44.8 22 0.00057 15.7 10.5 70 130-200 46-118 (194)
112 PRK11303 DNA-binding transcrip 44.8 22 0.00057 15.7 7.9 92 99-199 170-264 (330)
113 COG1609 PurR Transcriptional r 44.7 22 0.00057 15.7 7.9 91 100-198 167-262 (333)
114 KOG2388 consensus 44.7 22 0.00057 15.7 3.2 96 96-199 85-183 (477)
115 PRK13685 hypothetical protein; 44.2 23 0.00058 15.6 15.5 123 63-204 86-236 (326)
116 TIGR01830 3oxo_ACP_reduc 3-oxo 44.0 23 0.00058 15.6 5.2 53 100-162 15-67 (238)
117 PRK04020 rps2P 30S ribosomal p 43.7 23 0.00059 15.6 9.8 132 92-241 50-184 (204)
118 pfam01936 DUF88 Protein of unk 43.1 24 0.0006 15.5 6.8 74 132-205 47-122 (140)
119 COG1509 KamA Lysine 2,3-aminom 42.7 24 0.00061 15.5 4.2 97 93-199 142-252 (369)
120 PRK09354 recA recombinase A; P 42.6 24 0.00061 15.5 3.6 59 129-189 96-155 (350)
121 PRK00969 hypothetical protein; 42.1 3.5 9E-05 20.9 -1.6 110 89-202 286-407 (508)
122 TIGR02247 HAD-1A3-hyp Epoxide 41.9 12 0.00031 17.4 1.1 58 143-201 88-149 (228)
123 TIGR01941 nqrF NADH:ubiquinone 41.9 25 0.00063 15.4 2.9 14 153-166 116-129 (425)
124 pfam03599 CdhD CO dehydrogenas 41.6 25 0.00063 15.4 7.2 85 94-189 128-223 (384)
125 TIGR03268 methan_mark_3 putati 41.6 3.5 8.9E-05 20.9 -1.7 110 89-202 283-404 (503)
126 TIGR02416 CO_dehy_Mo_lg carbon 41.0 12 0.0003 17.5 0.9 32 121-155 499-530 (775)
127 PRK13529 malate dehydrogenase; 40.5 13 0.00032 17.3 1.1 30 114-145 296-325 (563)
128 cd06291 PBP1_Qymf_like Ligand 40.3 26 0.00066 15.3 8.1 94 100-199 104-199 (265)
129 PRK10423 transcriptional repre 40.1 26 0.00067 15.2 7.8 90 102-199 168-261 (327)
130 PTZ00339 UDP-N-acetylglucosami 40.0 26 0.00067 15.2 4.9 90 97-198 98-196 (499)
131 COG0722 AroG 3-deoxy-D-arabino 39.7 27 0.00068 15.2 3.5 71 111-182 226-305 (351)
132 TIGR02782 TrbB_P P-type conjug 39.7 27 0.00068 15.2 3.9 78 92-191 127-208 (315)
133 cd05017 SIS_PGI_PMI_1 The memb 39.6 27 0.00068 15.2 4.4 57 147-208 46-102 (119)
134 TIGR01846 type_I_sec_HlyB type 39.5 27 0.00068 15.2 5.4 54 2-56 267-320 (703)
135 cd06196 FNR_like_1 Ferredoxin 39.5 22 0.00057 15.7 2.2 47 115-167 102-148 (218)
136 cd02877 GH18_hevamine_XipI_cla 38.7 28 0.0007 15.1 8.8 84 96-184 60-163 (280)
137 TIGR02918 TIGR02918 conserved 38.6 6.3 0.00016 19.3 -0.8 57 128-185 198-254 (511)
138 PRK07535 methyltetrahydrofolat 38.5 22 0.00056 15.7 2.0 105 94-205 102-231 (268)
139 pfam06925 MGDG_synth Monogalac 38.4 28 0.00071 15.1 5.0 62 161-223 78-144 (169)
140 cd01537 PBP1_Repressors_Sugar_ 37.6 29 0.00073 15.0 8.8 91 101-198 111-203 (264)
141 PRK09954 hypothetical protein; 37.3 29 0.00074 15.0 3.3 81 67-158 58-150 (362)
142 cd04255 AAK_UMPK-MosAB AAK_UMP 37.3 29 0.00074 15.0 5.4 88 97-202 54-141 (262)
143 PRK07748 sporulation inhibitor 37.2 20 0.00051 16.0 1.7 26 173-198 92-118 (205)
144 pfam11019 DUF2608 Protein of u 37.1 29 0.00074 14.9 2.6 30 173-202 177-207 (251)
145 pfam00691 OmpA OmpA family. Th 36.6 30 0.00076 14.9 5.2 58 90-151 10-76 (97)
146 PRK09318 bifunctional 3,4-dihy 36.3 27 0.00069 15.1 2.2 103 90-205 251-360 (387)
147 cd06189 flavin_oxioreductase N 36.3 27 0.00069 15.2 2.2 42 116-163 102-143 (224)
148 cd06209 BenDO_FAD_NAD Benzoate 36.2 30 0.00077 14.9 3.8 43 115-163 105-147 (228)
149 cd06211 phenol_2-monooxygenase 36.2 27 0.00068 15.2 2.2 44 116-165 113-156 (238)
150 cd06213 oxygenase_e_transfer_s 36.1 27 0.00068 15.2 2.2 37 115-156 103-139 (227)
151 PRK06096 molybdenum transport 36.0 30 0.00077 14.8 4.4 125 68-210 142-271 (284)
152 PRK12815 carB carbamoyl phosph 35.7 31 0.00078 14.8 5.6 66 133-204 644-712 (1068)
153 PRK13406 bchD magnesium chelat 35.6 31 0.00078 14.8 3.5 48 157-204 522-569 (584)
154 TIGR01816 sdhA_forward succina 35.2 31 0.00079 14.8 2.4 11 183-193 316-326 (615)
155 PRK05756 pyridoxamine kinase; 35.1 31 0.0008 14.7 6.3 83 97-184 90-186 (287)
156 cd01543 PBP1_XylR Ligand-bindi 35.1 31 0.0008 14.7 8.0 94 99-199 100-197 (265)
157 cd05295 MDH_like Malate dehydr 35.0 31 0.0008 14.7 4.5 80 59-148 193-298 (452)
158 pfam04122 CW_binding_2 Putativ 34.8 32 0.00081 14.7 6.5 72 94-179 6-77 (90)
159 cd01424 MGS_CPS_II Methylglyox 34.8 32 0.00081 14.7 5.1 62 113-192 26-94 (110)
160 TIGR01768 GGGP-family geranylg 34.7 32 0.00081 14.7 4.0 17 146-162 195-211 (242)
161 pfam01261 AP_endonuc_2 Xylose 34.4 32 0.00082 14.7 6.5 89 92-188 61-161 (201)
162 TIGR01514 NAPRTase nicotinate 34.4 32 0.00081 14.7 2.3 25 174-204 213-237 (430)
163 pfam09873 DUF2100 Uncharacteri 34.3 32 0.00082 14.7 6.4 76 109-195 125-207 (215)
164 cd06210 MMO_FAD_NAD_binding Me 34.2 30 0.00077 14.8 2.2 46 115-166 111-156 (236)
165 TIGR01125 TIGR01125 MiaB-like 34.2 32 0.00083 14.6 3.5 52 59-124 30-81 (475)
166 COG2604 Uncharacterized protei 33.8 33 0.00083 14.6 7.0 75 97-193 236-310 (594)
167 PRK13289 nitric oxide dioxygen 33.7 31 0.00079 14.8 2.2 39 116-159 265-303 (399)
168 COG3962 Acetolactate synthase 33.7 33 0.00084 14.6 4.0 47 95-153 217-264 (617)
169 cd04743 NPD_PKS 2-Nitropropane 33.3 33 0.00085 14.5 3.8 113 64-188 122-244 (320)
170 COG5493 Uncharacterized conser 33.2 33 0.00085 14.5 3.0 54 148-201 165-227 (231)
171 PRK12655 fructose-6-phosphate 32.3 35 0.00088 14.4 5.2 53 150-206 135-190 (220)
172 cd06185 PDR_like Phthalate dio 31.8 35 0.0009 14.4 2.2 46 115-168 101-146 (211)
173 cd06212 monooxygenase_like The 31.6 36 0.00091 14.4 2.2 45 116-166 107-151 (232)
174 cd06187 O2ase_reductase_like T 31.5 36 0.00091 14.4 3.7 45 116-166 102-146 (224)
175 pfam01902 ATP_bind_4 ATP-bindi 31.4 36 0.00092 14.3 11.4 69 129-200 45-115 (219)
176 PRK12775 putative trifunctiona 31.3 36 0.00092 14.3 6.1 121 55-201 88-209 (993)
177 TIGR03402 FeS_nifS cysteine de 31.2 36 0.00092 14.3 7.6 18 216-233 355-372 (379)
178 TIGR01007 eps_fam capsular exo 30.8 37 0.00094 14.3 4.9 84 113-203 98-189 (207)
179 KOG3814 consensus 30.8 37 0.00094 14.3 5.3 20 2-21 162-181 (531)
180 KOG0430 consensus 30.8 12 0.00032 17.4 -0.3 64 133-201 886-962 (1257)
181 PRK11840 bifunctional sulfur c 30.5 37 0.00095 14.3 5.9 58 149-206 141-208 (327)
182 cd01173 pyridoxal_pyridoxamine 30.5 37 0.00095 14.2 7.5 85 97-183 87-182 (254)
183 cd06194 FNR_N-term_Iron_sulfur 30.1 38 0.00096 14.2 3.8 42 116-163 101-142 (222)
184 cd06167 LabA_like LabA_like pr 30.0 38 0.00096 14.2 6.0 40 166-205 93-132 (149)
185 TIGR02478 6PF1K_euk 6-phosphof 29.8 30 0.00076 14.9 1.5 14 161-174 488-501 (777)
186 pfam05690 ThiG Thiazole biosyn 29.8 38 0.00097 14.2 5.9 71 133-206 52-132 (246)
187 cd06188 NADH_quinone_reductase 29.4 39 0.00099 14.1 2.2 46 115-165 153-198 (283)
188 cd04728 ThiG Thiazole synthase 29.2 39 0.00099 14.1 5.7 72 132-206 52-133 (248)
189 pfam00580 UvrD-helicase UvrD/R 28.8 40 0.001 14.1 3.1 50 153-202 322-379 (494)
190 PRK03612 spermidine synthase; 28.7 40 0.001 14.1 12.6 27 180-206 412-442 (516)
191 PRK01688 histidinol-phosphate 28.6 40 0.001 14.0 8.1 67 133-204 62-128 (355)
192 PRK04165 acetyl-CoA decarbonyl 28.4 40 0.001 14.0 6.4 48 96-155 189-236 (454)
193 TIGR03127 RuMP_HxlB 6-phospho 28.3 40 0.001 14.0 9.5 89 146-240 74-165 (179)
194 COG0313 Predicted methyltransf 28.0 41 0.001 14.0 6.2 82 132-220 40-144 (275)
195 cd05844 GT1_like_7 Glycosyltra 28.0 33 0.00083 14.6 1.5 93 94-204 203-302 (367)
196 PRK12309 transaldolase/EF-hand 28.0 41 0.001 14.0 4.0 61 129-194 114-174 (391)
197 cd01542 PBP1_TreR_like Ligand- 27.4 42 0.0011 13.9 8.2 91 99-198 105-198 (259)
198 pfam07085 DRTGG DRTGG domain. 27.3 42 0.0011 13.9 6.1 39 115-164 64-102 (105)
199 TIGR01466 cobJ_cbiH precorrin- 27.1 42 0.0011 13.9 3.3 88 94-193 57-148 (254)
200 TIGR02109 PQQ_syn_pqqE coenzym 27.1 25 0.00065 15.3 0.8 100 93-203 130-255 (363)
201 COG0084 TatD Mg-dependent DNas 27.0 41 0.001 14.0 1.9 51 128-183 157-207 (256)
202 cd06278 PBP1_LacI_like_2 Ligan 27.0 43 0.0011 13.9 7.4 91 100-198 107-200 (266)
203 PRK13462 acid phosphatase; Pro 26.5 43 0.0011 13.8 4.3 25 165-190 131-155 (203)
204 cd06184 flavohem_like_fad_nad_ 26.3 44 0.0011 13.8 2.1 45 116-166 117-161 (247)
205 TIGR00364 TIGR00364 exsB prote 26.3 44 0.0011 13.8 4.5 56 68-146 1-58 (227)
206 PRK13223 phosphoglycolate phos 26.1 44 0.0011 13.8 3.7 84 94-193 131-214 (272)
207 pfam02230 Abhydrolase_2 Phosph 26.1 44 0.0011 13.8 5.2 20 181-200 167-186 (213)
208 pfam00532 Peripla_BP_1 family. 26.0 44 0.0011 13.7 10.0 95 99-198 111-208 (281)
209 TIGR02995 ectoine_ehuB ectoine 25.8 45 0.0011 13.7 2.4 45 108-162 140-184 (285)
210 pfam10742 DUF2555 Protein of u 25.8 45 0.0011 13.7 2.8 40 154-193 7-46 (57)
211 PRK01581 speE spermidine synth 25.8 44 0.0011 13.8 1.8 76 135-210 206-292 (363)
212 PRK11872 antC anthranilate dio 25.7 45 0.0011 13.7 2.2 45 115-165 212-256 (340)
213 pfam00919 UPF0004 Uncharacteri 25.4 45 0.0012 13.7 4.7 48 61-123 32-79 (98)
214 PRK10411 DNA-binding transcrip 25.2 27 0.00068 15.2 0.6 10 176-185 117-126 (240)
215 COG2943 MdoH Membrane glycosyl 25.1 46 0.0012 13.6 10.9 122 66-205 145-282 (736)
216 cd03115 SRP The signal recogni 25.1 46 0.0012 13.6 6.2 60 146-205 84-150 (173)
217 PRK03501 ppnK inorganic polyph 25.0 46 0.0012 13.6 1.9 14 61-74 35-48 (264)
218 TIGR02915 PEP_resp_reg putativ 24.9 46 0.0012 13.6 2.3 113 68-195 43-161 (451)
219 COG2086 FixA Electron transfer 24.6 47 0.0012 13.6 6.9 106 88-205 34-147 (260)
220 PRK03262 consensus 24.5 47 0.0012 13.6 8.1 19 137-155 66-84 (355)
221 PRK12756 phospho-2-dehydro-3-d 24.4 47 0.0012 13.6 3.7 59 111-170 226-288 (349)
222 cd01571 NAPRTase_B Nicotinate 24.4 48 0.0012 13.6 6.8 70 137-207 204-277 (302)
223 cd02029 PRK_like Phosphoribulo 24.3 48 0.0012 13.5 6.2 13 94-106 70-82 (277)
224 PRK03220 consensus 24.3 48 0.0012 13.5 2.3 67 132-206 65-132 (257)
225 PRK04452 acetyl-CoA decarbonyl 24.3 48 0.0012 13.5 5.3 63 127-190 185-260 (322)
226 cd06217 FNR_iron_sulfur_bindin 24.2 48 0.0012 13.5 3.9 45 116-166 111-155 (235)
227 PRK01215 competence damage-ind 24.1 48 0.0012 13.5 4.6 30 92-126 47-76 (264)
228 PRK02083 imidazole glycerol ph 24.0 48 0.0012 13.5 4.3 13 139-153 93-105 (253)
229 TIGR02817 adh_fam_1 zinc-bindi 23.9 49 0.0012 13.5 7.7 116 39-183 127-252 (338)
230 cd04245 AAK_AKiii-YclM-BS AAK_ 23.8 49 0.0012 13.5 2.6 16 132-147 125-140 (288)
231 TIGR02009 PGMB-YQAB-SF beta-ph 23.7 49 0.0012 13.5 2.5 35 147-182 98-133 (211)
232 PRK00208 thiG thiazole synthas 23.6 49 0.0013 13.5 5.7 71 133-206 54-134 (256)
233 cd01391 Periplasmic_Binding_Pr 23.5 49 0.0013 13.4 10.3 82 115-198 126-207 (269)
234 TIGR02151 IPP_isom_2 isopenten 23.4 26 0.00066 15.3 0.3 54 112-165 55-115 (349)
235 cd06215 FNR_iron_sulfur_bindin 23.1 50 0.0013 13.4 3.9 45 116-166 107-151 (231)
236 cd00885 cinA Competence-damage 23.1 50 0.0013 13.4 5.0 58 92-160 43-100 (170)
237 TIGR01404 FlhB_rel_III type II 23.0 50 0.0013 13.4 2.8 15 130-144 293-307 (346)
238 cd06198 FNR_like_3 NAD(P) bind 22.9 51 0.0013 13.4 2.1 31 116-151 99-129 (216)
239 COG1117 PstB ABC-type phosphat 22.6 24 0.00061 15.5 -0.0 85 94-194 126-217 (253)
240 TIGR02317 prpB methylisocitrat 22.5 52 0.0013 13.3 2.9 78 65-153 33-111 (287)
241 PRK03670 competence damage-ind 22.3 52 0.0013 13.3 4.5 30 93-126 45-74 (252)
242 TIGR02522 pilus_cpaD pilus (Ca 22.2 52 0.0013 13.3 4.4 68 91-160 58-127 (211)
243 PRK03673 competence damage-ind 22.2 52 0.0013 13.3 4.7 27 94-125 47-73 (396)
244 COG1830 FbaB DhnA-type fructos 22.2 52 0.0013 13.3 3.0 16 65-80 77-92 (265)
245 pfam06258 DUF1022 Protein of u 22.1 53 0.0013 13.3 7.7 108 89-204 120-254 (308)
246 pfam08986 DUF1889 Domain of un 22.0 53 0.0013 13.3 2.7 65 95-168 23-87 (119)
247 cd04592 CBS_pair_EriC_assoc_eu 21.8 53 0.0014 13.2 2.7 108 96-208 11-120 (133)
248 COG3142 CutC Uncharacterized p 21.8 43 0.0011 13.8 1.1 43 135-179 134-176 (241)
249 COG1603 RPP1 RNase P/RNase MRP 21.6 54 0.0014 13.2 6.5 65 115-181 100-169 (229)
250 pfam09419 DUF2010 Protein of u 21.6 54 0.0014 13.2 5.2 10 135-144 97-106 (166)
251 PRK12342 putative electron tra 21.5 54 0.0014 13.2 7.4 106 89-205 33-145 (254)
252 COG0621 MiaB 2-methylthioadeni 21.5 54 0.0014 13.2 5.9 49 60-124 35-83 (437)
253 pfam11996 DUF3491 Protein of u 21.3 55 0.0014 13.2 2.4 25 91-123 40-64 (934)
254 cd06214 PA_degradation_oxidore 21.2 55 0.0014 13.2 3.8 46 116-167 112-157 (241)
255 PRK04635 histidinol-phosphate 21.2 55 0.0014 13.2 8.5 11 196-206 283-293 (346)
256 TIGR00114 lumazine-synth 6,7-d 21.1 46 0.0012 13.7 1.2 82 63-164 63-144 (148)
257 TIGR01668 YqeG_hyp_ppase HAD s 20.9 55 0.0014 13.1 3.3 98 94-199 54-156 (196)
258 PRK05442 malate dehydrogenase; 20.9 56 0.0014 13.1 6.0 12 63-74 78-89 (325)
259 TIGR03350 type_VI_ompA type VI 20.9 56 0.0014 13.1 6.8 78 67-154 23-113 (137)
260 PRK09423 gldA glycerol dehydro 20.9 56 0.0014 13.1 8.1 14 64-77 83-96 (366)
261 pfam06057 VirJ Bacterial virul 20.8 56 0.0014 13.1 2.5 11 134-144 21-31 (192)
262 PRK05211 consensus 20.7 56 0.0014 13.1 5.2 53 113-177 65-117 (248)
263 PRK10684 HCP oxidoreductase, N 20.6 56 0.0014 13.1 2.1 22 132-153 217-238 (335)
264 pfam02887 PK_C Pyruvate kinase 20.4 57 0.0015 13.0 7.6 63 112-184 38-103 (117)
265 PRK07609 CDP-6-deoxy-delta-3,4 20.4 57 0.0015 13.0 2.2 59 116-181 208-270 (337)
266 PRK10760 murein hydrolase B; P 20.3 42 0.0011 13.9 0.8 92 96-199 191-298 (357)
267 COG1611 Predicted Rossmann fol 20.3 57 0.0015 13.0 4.1 27 175-201 92-118 (205)
No 1
>PRK10494 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=363.22 Aligned_cols=207 Identities=24% Similarity=0.316 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999989999999999962124544464545687589996252137777655543468205899999999
Q gi|255764508|r 23 IFFMSCFMLLFSFIGWGIIPTILLKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMR 102 (242)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~ 102 (242)
..++.+.+++++++|+.+++++++.+||+.|+.+ +..+++|+|||||||.+.+++.+. ..++.+++.+|+.+|++
T Consensus 40 ~~~~~~~~l~l~~~s~~pv~~~Ll~~LE~~y~~~----~~~~~~d~IVVLGGg~~~~~~~~~-~~~~~~~a~~Rl~~g~~ 114 (259)
T PRK10494 40 KIFISIGWLALLLLSLQPVADRLLRPIESTYPTW----NGSQKVDYIVVLGGGYTWNPQWAP-SSNLINNSLPRLNEGIR 114 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHH
T ss_conf 9999999999999998999999999998645687----777777879992685115887676-44444648999999999
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 99825200575338970688887788827999999997499987811110146657779999999762368640885345
Q gi|255764508|r 103 LYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA 182 (242)
Q Consensus 103 L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa 182 (242)
||++++ .++||+|||.+..++.+||+.|++.+.++|||+++|++|++|+||+|||.++++++++ ++++|||||
T Consensus 115 L~r~~~----~~~li~SGG~~~~~~~sea~~~~~~~~~lGv~~~~I~~e~~srnT~EnA~~~~~ll~~---~~~lLVTSA 187 (259)
T PRK10494 115 LWRANP----GAKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGD---APFLLVTSA 187 (259)
T ss_pred HHHHCC----CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHCC---CCEEEECCH
T ss_conf 998389----9839996887888999899999999998399989915256777889999999998488---978998373
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999769818998426644------311137545788989999999999999998648
Q gi|255764508|r 183 YHLKRSQLYFQHFGINTKASCSDYLN------AYYSIIPLSANFYLTELALKEYIGILIAYYRGN 241 (242)
Q Consensus 183 ~Hm~RA~~~f~~~gi~~~p~~~d~~~------~~~~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~ 241 (242)
+|||||+++|+++|++++|+||||.. .+.+|+|++++|..++.++|||+|++||++||-
T Consensus 188 ~HMpRA~~~F~~~G~~viP~P~d~~~~~~~~~~~~~~lP~~~aL~~s~~aihE~lG~lwy~lrG~ 252 (259)
T PRK10494 188 SHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRAGYETLGRIWQWLKGS 252 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 35389999999879922430465522578887087629987999998999999999999987277
No 2
>pfam02698 DUF218 DUF218 domain. This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis.
Probab=100.00 E-value=9.5e-32 Score=226.31 Aligned_cols=147 Identities=32% Similarity=0.498 Sum_probs=128.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 87589996252137777655543468205899999999998252005753389706888877888279999999974999
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVE 144 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~ 144 (242)
++|+||||||| +....+|+.+|++||++|+++ +|++|||.+..+..+||+.|+++++++|||
T Consensus 1 ~~d~IVVlG~~--------------~~~~~~R~~~a~~l~~~g~~~----~ii~sGg~~~~~~~~ea~~~~~~l~~~gvp 62 (148)
T pfam02698 1 PADAIVVLGGG--------------SPALAARLDAAAELYRAGPAP----RIIVSGGAGGGEPVSEAEVMRRYLVELGVP 62 (148)
T ss_pred CCCEEEECCCC--------------CHHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99889989999--------------877999999999999809998----899848988888878999999999986989
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87811110146657779999999762368640885345889999999997698189984266443111375457889899
Q gi|255764508|r 145 RDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAYYSIIPLSANFYLTE 224 (242)
Q Consensus 145 ~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~~~~~p~~~~l~~~~ 224 (242)
+++|++|++|+||+||+.+++++++++++++++||||+|||+||.++|++.|+++.++++++...... .........
T Consensus 63 ~~~I~~e~~s~nT~ena~~~~~~~~~~~~~~v~lVTs~~H~~Ra~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 139 (148)
T pfam02698 63 AEAILLEPQSRNTYENARFSAELLRERGLRRVLLVTSAFHMRRALLLFRRAGPEVVPVPADYPTPLPP---RALWLRLAR 139 (148)
T ss_pred HHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCC---CHHHHHHHH
T ss_conf 99977455677835519999999997699759998988899999999998099059986798888887---256888889
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|255764508|r 225 LALKEYIG 232 (242)
Q Consensus 225 ~~~~E~ig 232 (242)
.++|||+|
T Consensus 140 ~~~~E~~~ 147 (148)
T pfam02698 140 AALREYLG 147 (148)
T ss_pred HHHHHHHC
T ss_conf 99999957
No 3
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=99.97 E-value=6.1e-31 Score=221.05 Aligned_cols=148 Identities=30% Similarity=0.505 Sum_probs=130.7
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 58999625213777765554346820589999999999825200575338970688887788827999999997499987
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERD 146 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~ 146 (242)
|+|||||||....... ....+|+.+|++||++++++ +|++|||.+.+.+.+|++.|++++++.|||++
T Consensus 1 daIvVLG~~~~~~~~~--------~~~~~R~~~a~~L~~~~~~~----~ii~sGg~~~~~~~~Ea~~~~~~l~~~gv~~~ 68 (150)
T cd06259 1 DAIVVLGGGVNGDGPS--------PILAERLDAAAELYRAGPAP----KLIVSGGQGPGEGYSEAEAMARYLIELGVPAE 68 (150)
T ss_pred CEEEECCCCCCCCCCC--------HHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 9899899987999989--------79999999999999819998----89995887999988999999999998599989
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 811110146657779999999762368640885345889999999997698--189984266443111375457889899
Q gi|255764508|r 147 DIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGI--NTKASCSDYLNAYYSIIPLSANFYLTE 224 (242)
Q Consensus 147 ~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi--~~~p~~~d~~~~~~~~~p~~~~l~~~~ 224 (242)
+|++|++|+||+|||.+++++++++++++++||||+|||+||.++|++++. .++|+|++...... ++....
T Consensus 69 ~i~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVTs~~H~~Ra~~~~~~~~~~~~~~~~p~~~~~~~~-------~~~~~~ 141 (150)
T cd06259 69 AILLEDRSTNTYENARFSAELLRERGIRSVLLVTSAYHMPRALLIFRKAGLDVEVVPAPTDFYSLSS-------ALRLLR 141 (150)
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-------HHHHHH
T ss_conf 9683134777024599999999976998799999888999999999980998459868877613600-------466678
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|255764508|r 225 LALKEYIGI 233 (242)
Q Consensus 225 ~~~~E~ig~ 233 (242)
.++|||+|+
T Consensus 142 ~~~~E~~~~ 150 (150)
T cd06259 142 LALREYLGL 150 (150)
T ss_pred HHHHHHHCC
T ss_conf 999998569
No 4
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=5.5e-28 Score=201.81 Aligned_cols=187 Identities=28% Similarity=0.427 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999899999999999621245444645456875899962521377776555434682058999999999982520
Q gi|255764508|r 30 MLLFSFIGWGIIPTILLKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQ 109 (242)
Q Consensus 30 ~l~~~~~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~ 109 (242)
+....+.+..+++..+..+++..+......+. ..|+||++||+.. ...++.|+.++.++++.++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iv~~Gg~~~------------~~~~~~rl~~~~~~~~~~~~ 96 (223)
T COG1434 32 LIILLLAALLILGGFLLRPLEARSAAALLLPG---LADAIVVLGGGSR------------LTDHLIRLLEAARLAKILPI 96 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCEEEECCCCCC------------CHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999834552112101220334545---6888998488754------------35899999999999997243
Q ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf 05753389706888877888279999999974999878111101466577799999997623686408853458899999
Q gi|255764508|r 110 HSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQ 189 (242)
Q Consensus 110 ~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~ 189 (242)
.+ +..||| ..+....++++...|+|.++|+.|++|+||+|||.++++++++++++++++|||+|||+||.
T Consensus 97 ~~----v~~s~~------~~~~~~~~~~~~~~gv~~~~i~~e~~s~~T~eNa~~s~~~l~~~~~~~~ilVTs~~Hm~Ra~ 166 (223)
T COG1434 97 SG----VLESGG------VIEIQATRRYLENLGVPAERIILEDRSRNTVENARFSRRLLRTQGPESVILVTSPYHMPRAL 166 (223)
T ss_pred CC----CCCCCC------CCHHHHHHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 67----066765------21477888999985998778242077776899999999999973983799988986289999
Q ss_pred HHHHHCCCEEEEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999769818998426644-----311137545788989999999999999998648
Q gi|255764508|r 190 LYFQHFGINTKASCSDYLN-----AYYSIIPLSANFYLTELALKEYIGILIAYYRGN 241 (242)
Q Consensus 190 ~~f~~~gi~~~p~~~d~~~-----~~~~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~ 241 (242)
.+|+++|++++|+|+++.. ....+++....+.......+||++.+.|++.+.
T Consensus 167 ~~~~~~g~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (223)
T COG1434 167 LLFRKLGISVIPYPVGFLDRNILRLPLSLLALAEALLKSLRALREALGLLGYGLKGR 223 (223)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999982898854542345532102055551567999999999999998861045679
No 5
>PRK10834 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-23 Score=172.65 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=126.7
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 46454568758999625213777765554346820589999999999825200575338970688887788827999999
Q gi|255764508|r 58 LSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNK 137 (242)
Q Consensus 58 ~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~ 137 (242)
...++.+..++.+|||.+.... .+.|+..-.+|+++|++||++|+.+ .|++|| +....++.|...|+++
T Consensus 37 ~~i~~vP~~~valVLGtak~~~------~G~pn~~~~~RldaA~~LY~~GKv~----~iLvSG-Dn~~~~YnEp~~Mk~~ 105 (239)
T PRK10834 37 DELQDLPYRQVGVVLGTAKYYR------TGVINQYYRYRIQGAINAYNSGKVN----YLLLSG-DNALQSYNEPMTMRKD 105 (239)
T ss_pred CCHHHCCCCCEEEEECCCCCCC------CCCCCHHHHHHHHHHHHHHHCCCCC----EEEECC-CCCCCCCCCHHHHHHH
T ss_conf 6874779875699945764678------9981989999999999999869974----898668-9998889828999999
Q ss_pred HHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCH
Q ss_conf 99749998781111014665777999999976236864088534588999999999769818998426644311137545
Q gi|255764508|r 138 LLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAYYSIIPLS 217 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~~~~~p~~ 217 (242)
|++.|||+++|.+|..+.+|+++....+++.+ .+++++||+.||++||..++++.|++++++.+......
T Consensus 106 Li~~GVP~e~I~~D~AGfrT~DS~vRAk~VF~---~~~~iIVTQ~FH~~RAlfiAr~~GidA~g~~a~~~~~~------- 175 (239)
T PRK10834 106 LIAAGVDPADIVLDYAGFRTLDSIVRTRKVFD---TNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKNM------- 175 (239)
T ss_pred HHHCCCCHHHEECCCCCCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCC-------
T ss_conf 99859989995056676548999999999809---98289994601389999999974983699716886544-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788989999999999999998
Q gi|255764508|r 218 ANFYLTELALKEYIGILIAYY 238 (242)
Q Consensus 218 ~~l~~~~~~~~E~ig~l~~~~ 238 (242)
...-+||+++.+...+
T Consensus 176 -----~k~r~RE~~AR~ka~~ 191 (239)
T PRK10834 176 -----LSVRVREFAARFGALA 191 (239)
T ss_pred -----CHHHHHHHHHHHHHHH
T ss_conf -----1105999999998885
No 6
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=99.85 E-value=4.1e-19 Score=144.08 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=123.0
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 64545687589996252137777655543468205899999999998252005753389706888877888279999999
Q gi|255764508|r 59 SPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKL 138 (242)
Q Consensus 59 ~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l 138 (242)
.++..+.-.+-||||.+.....+ .++..-..|+++|+.+|++||.+. +++|| +.....+.|...|++.|
T Consensus 50 ~~~~lP~r~vgvVLGtsky~~~g------~~N~yy~~Ri~aA~~ly~~gKV~~----LLlSG-DN~~~sYnEp~tM~kdL 118 (235)
T COG2949 50 DIQDLPARQVGVVLGTSKYLAKG------PPNRYYTYRIDAAIALYKAGKVNY----LLLSG-DNATVSYNEPRTMRKDL 118 (235)
T ss_pred CHHHCCCCCEEEEEECCCCCCCC------CCCHHHHHHHHHHHHHHHCCCEEE----EEEEC-CCCCCCCCCHHHHHHHH
T ss_conf 85458862048997223002479------955768999999999986477049----99816-87753465458999999
Q ss_pred HHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHH
Q ss_conf 97499987811110146657779999999762368640885345889999999997698189984266443111375457
Q gi|255764508|r 139 LESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAYYSIIPLSA 218 (242)
Q Consensus 139 ~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~~~~~p~~~ 218 (242)
.++|||++.|.+|..+..|.|+...++++.+.+ ++.+||+.||..||..+++..|++++++.++.......+
T Consensus 119 ~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~---~ftIItQ~FHceRAlfiA~~~gIdAic~~ap~p~~~~~~----- 190 (235)
T COG2949 119 IAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTN---DFTIITQRFHCERALFIARQMGIDAICFAAPDPEGRSGL----- 190 (235)
T ss_pred HHCCCCHHHEEECCCCCCHHHHHHHHHHHCCCC---CEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCC-----
T ss_conf 983998889032003741789899899870767---279982012348899999982975478658994446770-----
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889899999999999999
Q gi|255764508|r 219 NFYLTELALKEYIGILIA 236 (242)
Q Consensus 219 ~l~~~~~~~~E~ig~l~~ 236 (242)
..-+||.++.+..
T Consensus 191 -----~vrlRE~~ARv~A 203 (235)
T COG2949 191 -----SVRLREFLARVKA 203 (235)
T ss_pred -----EEHHHHHHHHHHH
T ss_conf -----2079999988878
No 7
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.00 E-value=0.0081 Score=38.07 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=61.5
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHH---------
Q ss_conf 33897068888778882799999999749998781111014665777999999976236864088534588---------
Q gi|255764508|r 114 CTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYH--------- 184 (242)
Q Consensus 114 ~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~H--------- 184 (242)
-.+|+|+.+ -...+++.+.+ ++++.+|++|+.++||.--...++..+.+++.+.+++|+.+-|
T Consensus 51 ~i~IvTn~~-------~~~~v~~ql~~-~~~~~~ii~EP~~rnTApAI~laa~~~~~~~~d~~l~v~PsDH~I~d~~~F~ 122 (274)
T cd02509 51 RILVVTNEE-------YRFLVREQLPE-GLPEENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFL 122 (274)
T ss_pred CCEEEECCH-------HHHHHHHHHHH-CCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
T ss_conf 809995721-------79999999884-3986648967688897999999999999759997799984740200889999
Q ss_pred --HHHHHHHHHHCCCEEEEEECCC
Q ss_conf --9999999997698189984266
Q gi|255764508|r 185 --LKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 185 --m~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+.+|...+++-.+-+.++..++
T Consensus 123 ~~i~~a~~~a~~~~ivt~GI~P~~ 146 (274)
T cd02509 123 KAVKKAVEAAEEGYLVTFGIKPTR 146 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 999999999733988997421377
No 8
>KOG4533 consensus
Probab=95.75 E-value=0.0089 Score=37.82 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=67.1
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCC--CCCCHHHHHHHHHHHCCCC--HHHHHCCHHHHHHHHHHHHHHHHHHH--
Q ss_conf 99999999825200575338970688887--7888279999999974999--87811110146657779999999762--
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQK--HGLAESIVYNNKLLESGVE--RDDIKLETQSLDTFQNAQFSSSMIKN-- 170 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~~--~~~~Ea~~m~~~l~~~Gv~--~~~I~~e~~s~nT~ena~~~~~il~~-- 170 (242)
+..++++. ..+....+++|||+... ...+||+....-.++.|-+ ..+-..|+-+++.+||..++.-...+
T Consensus 122 ~~~gid~~----~~DdeslLlfsgg~tr~~agp~seaqsyy~~s~~~~knev~sr~~TEEfarDSfeNllfSv~RF~Evt 197 (317)
T KOG4533 122 SNDGIDVP----NFDDESLLLFSGGKTRLSAGPVSEAQSYYGGSITFGKNEVRSRALTEEFARDSFENLLFSVYRFEEVT 197 (317)
T ss_pred CCCCCCCC----CCCCCEEEEEECCCCCCCCCCCCHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11466666----77862135530763125778851644311124552521565544168786766876666434177575
Q ss_pred -CCCCCEEEECCHHHHHHHHHHHHHC
Q ss_conf -3686408853458899999999976
Q gi|255764508|r 171 -MQGKNIILVSSAYHLKRSQLYFQHF 195 (242)
Q Consensus 171 -~~~~~vilVTsa~Hm~RA~~~f~~~ 195 (242)
+-+++|-+|+=+|.|+|=..+-++.
T Consensus 198 ~~yPQkITvvsfdFK~~RF~~lHrkA 223 (317)
T KOG4533 198 KKYPQKITVVSFDFKMPRFISLHRKA 223 (317)
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 13786138998511654777767865
No 9
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=89.87 E-value=1.6 Score=23.20 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH---HHHHHHCC----CCCEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 999999997499987811110146657779999---99976236----86408853458899999999976981899842
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFS---SSMIKNMQ----GKNIILVSSAYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~---~~il~~~~----~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
..+.+.+.+....+.-++.-.||-+|.|...+. +++++++. .++.+.||++--- +...|++.+.++.+.|.
T Consensus 61 ~~~~~~l~~l~~~~TlfiviSKSg~T~ETl~~~~~~~~~l~~~~~~~~~~~~vaIT~~~s~--l~~~a~~~~~~i~~~~~ 138 (158)
T cd05015 61 DDLAELLKKLDPETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSG--LLKKAGIEGLNTFEIPD 138 (158)
T ss_pred HHHHHHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCHH--HHHHHCCCCCCEEECCC
T ss_conf 9999999727930149999759998689999999999999983203556607898059669--99985758858888999
Q ss_pred CCCCCCCCC
Q ss_conf 664431113
Q gi|255764508|r 205 DYLNAYYSI 213 (242)
Q Consensus 205 d~~~~~~~~ 213 (242)
+ ..+.++.
T Consensus 139 ~-IGGRfSv 146 (158)
T cd05015 139 W-VGGRFSV 146 (158)
T ss_pred C-CCCCCHH
T ss_conf 9-9981176
No 10
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=88.45 E-value=1.6 Score=23.12 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=45.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH---------HHHHHHHHHHCCCCHHHHHCCHHH
Q ss_conf 55434682058999999999982520057533897068888778882---------799999999749998781111014
Q gi|255764508|r 84 AIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE---------SIVYNNKLLESGVERDDIKLETQS 154 (242)
Q Consensus 84 ~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E---------a~~m~~~l~~~Gv~~~~I~~e~~s 154 (242)
.....+..++..-+.+-+++.+++| ..++.+.| .....|..| |+..++||+..||+.++|....-+
T Consensus 75 fd~~~l~~~~~~~L~~~a~~L~~~p----~~~v~i~G-htD~~Gt~eYN~~Ls~rRA~aV~~yL~~~GV~~~ri~~vsyG 149 (173)
T PRK10802 75 LDKYDIRSDFAQMLDAHANFLRSNP----SYKVTVEG-HADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 149 (173)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCC----CEEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEC
T ss_conf 8852169989999999999999889----91799987-469988499999999999999999999849998996898766
No 11
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=88.25 E-value=2 Score=22.47 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHC---CCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 545687589996252137777655543468205899-99999999825---20057533897068888778882799999
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSR-IFETMRLYKSC---KQHSMHCTIIISGGDPQKHGLAESIVYNN 136 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~R-l~~a~~L~~~~---~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~ 136 (242)
+..++.+.|||+|=|-. +...| +.+|+.-+... +..+...++.+-.. + .+..+.+
T Consensus 67 ~~~k~~~~vV~IGIGGS--------------~LG~~a~~~aL~~~~~n~~~~~~~~~~~i~f~~N------v-Dp~~l~~ 125 (454)
T PRK00973 67 EWIKNFENVVVLGIGGS--------------ALGNLALHTALLPLNYNELSKEERNGYRIFVLDN------V-DPEKTAS 125 (454)
T ss_pred HHHCCCCEEEEECCCHH--------------HHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEEC------C-CHHHHHH
T ss_conf 97478987999543536--------------7899999999500112310011168975999808------9-9899999
Q ss_pred HHHHCCCCHHHHHCCHHHHHHHHHHHH---HHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 999749998781111014665777999---9999762368---64088534588999999999769818998426
Q gi|255764508|r 137 KLLESGVERDDIKLETQSLDTFQNAQF---SSSMIKNMQG---KNIILVSSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 137 ~l~~~Gv~~~~I~~e~~s~nT~ena~~---~~~il~~~~~---~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
.+...--.+.-+++-+||-+|.|.+.+ .++++++.+. ++++.||++--- -....+++.|+.+.++|-+
T Consensus 126 ~l~~ld~~~TlfiViSKSgtT~ETl~n~~~~r~~l~~~g~~~~~h~vaiT~~~~~-~l~~~a~~~g~~~f~ipd~ 199 (454)
T PRK00973 126 ILDVIDPKKTLFNVISKSGNTAETLANYLIVRGLLEKYGLDPKKHLVFTTDPEKG-ELKKIAEEEGYKTLEIPEN 199 (454)
T ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCCCC-HHHHHHHHCCEEEECCCCC
T ss_conf 9974793307999984897968999999999999996495676565775267511-5677788749107248999
No 12
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.79 E-value=2 Score=22.45 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=49.5
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHH--CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf 338970688887788827999999997--4999878111101466577799999997623686408853458899999
Q gi|255764508|r 114 CTIIISGGDPQKHGLAESIVYNNKLLE--SGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQ 189 (242)
Q Consensus 114 ~~ii~SGg~~~~~~~~Ea~~m~~~l~~--~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~ 189 (242)
.++++|+-+ .....++.+.+ .+.+.+ |++|+.+|||.--...++..+.++..+.+++|..+-|+-+-.
T Consensus 52 ~~~vVtne~-------~~f~v~eql~e~~~~~~~~-illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~ 121 (333)
T COG0836 52 EPLVVTNEK-------YRFIVKEQLPEIDIENAAG-IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADE 121 (333)
T ss_pred CEEEEECHH-------HHHHHHHHHHHHHHCCCCC-EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEECCH
T ss_conf 609995779-------9999999866410125660-685457877499999999999875898389994475565568
No 13
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=86.48 E-value=2.6 Score=21.82 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHHH-HHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCC
Q ss_conf 99999-9982520057533897068888778882-7999999997499987811110146657779999-9997623686
Q gi|255764508|r 98 FETMR-LYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGK 174 (242)
Q Consensus 98 ~~a~~-L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~ 174 (242)
..+++ |.+.|.. +|.+-+|........| -+..++.+.+.|++.+..+..+. ..|+|.+... +++++.....
T Consensus 107 ~~a~~~L~~~G~~-----~I~~i~g~~~~~~~~~R~~Gf~~a~~~~gi~~~~~~i~~~-~~s~~~~~~~~~~ll~~~~~~ 180 (270)
T cd01545 107 REMTRHLIDLGHR-----RIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQG-DFTFESGLEAAEALLALPDRP 180 (270)
T ss_pred HHHHHHHHHCCCC-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC-CCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999999974996-----5999369977736999999999999983999772122026-531026999999998559998
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 408853458899999999976981
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.++.+++.....++..+++.|++
T Consensus 181 tai~~~nD~~A~g~~~~l~~~g~~ 204 (270)
T cd01545 181 TAIFASNDDMAAGVLAVAHRRGLR 204 (270)
T ss_pred CEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 589978889999999999981899
No 14
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.99 E-value=2.7 Score=21.66 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=57.4
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99999982520057533897068888778882--7999999997499987811110146657779999999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
.+-.|+++|..+ +.+-+|.... ..+. -+..++.+.+.|++....++.....+..+.....++++......+.
T Consensus 105 ~~~~Li~~G~~~-----i~~l~~~~~~-~~~~~R~~Gf~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~a 178 (265)
T cd06285 105 ATRHLLDLGHRR-----IAVLAGPDYA-STARDRLAGFRAALAEAGIEVPPERIVYSGFDIEGGEAAAEKLLRSDSPPTA 178 (265)
T ss_pred HHHHHHHHCCCC-----EEECCCCCCC-CHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999838865-----8754788777-0599999999999998699987566013662155699999999856999881
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++.+++.-...++..+++.|+++
T Consensus 179 i~~~nD~~A~g~~~~l~~~g~~i 201 (265)
T cd06285 179 IFAVNDFAAIGVMGAARDRGLRV 201 (265)
T ss_pred EECCCHHHHHHHHHHHHHCCCCC
T ss_conf 00378899999999999859999
No 15
>TIGR00454 TIGR00454 conserved hypothetical protein TIGR00454; InterPro: IPR005245 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=85.00 E-value=0.76 Score=25.25 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999998252005753389706888877888279999999974999878-1111014665777999999976236864
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDD-IKLETQSLDTFQNAQFSSSMIKNMQGKN 175 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~-I~~e~~s~nT~ena~~~~~il~~~~~~~ 175 (242)
+++.+.-|+... +.+--+++|- |.. ...++|+.+.+..-.+ ++++..+.-=.|-..+.-.-++..--..
T Consensus 31 IDhvl~~l~~~~--GV~~ii~~TS--PhT------P~Te~y~~~~~~~~~~ivvidasGkGYiEDl~E~~~hlE~~~~EP 100 (204)
T TIGR00454 31 IDHVLEALKKAK--GVDNIIVVTS--PHT------PKTEEYVAEKYKEYKRIVVIDASGKGYIEDLREVLSHLELAFSEP 100 (204)
T ss_pred HHHHHHHHHHCC--CCCEEEEEEC--CCC------CCCHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 577778664047--8753799837--779------763788730585045788997699960252789999877663398
Q ss_pred EEEECCHHHHHHHHHH
Q ss_conf 0885345889999999
Q gi|255764508|r 176 IILVSSAYHLKRSQLY 191 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~ 191 (242)
+++|+|+.=.-|...+
T Consensus 101 ~lV~ssDl~~~r~~~i 116 (204)
T TIGR00454 101 LLVVSSDLVLVRDKII 116 (204)
T ss_pred EEEEECCHHHHHHHHH
T ss_conf 5787436024336778
No 16
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein; InterPro: IPR014169 Members in this entry represent the peptidoglycan-associated lipoprotein (Pal or OprL) protein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The entry represents only the conserved C-terminal domain..
Probab=84.92 E-value=2.9 Score=21.46 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH---------HHHHHHHHHHCCCCHHHHHC----CHHHH
Q ss_conf 682058999999999982520057533897068888778882---------79999999974999878111----10146
Q gi|255764508|r 89 PSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE---------SIVYNNKLLESGVERDDIKL----ETQSL 155 (242)
Q Consensus 89 ~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E---------a~~m~~~l~~~Gv~~~~I~~----e~~s~ 155 (242)
+..++.+=+.+=++..+ ++++.+|++-| ....-|.+| |.+.+++|+.+||++++|-+ |+++.
T Consensus 11 l~~e~~~~l~~hA~~L~----~~p~~~V~iEG-H~DERGTrEYNlALGeRRA~AV~~yL~~~GV~~~q~~~vSYGkErP~ 85 (104)
T TIGR02802 11 LKSEAQAILDAHAQYLK----KNPSVRVTIEG-HTDERGTREYNLALGERRANAVKDYLQAKGVSASQIETVSYGKERPA 85 (104)
T ss_pred CCHHHHHHHHHHHHHHH----HCCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 17799999999899998----67993788863-07888887777778899999999999973896110046302665687
Q ss_pred HH
Q ss_conf 65
Q gi|255764508|r 156 DT 157 (242)
Q Consensus 156 nT 157 (242)
.+
T Consensus 86 ~~ 87 (104)
T TIGR02802 86 AL 87 (104)
T ss_pred CC
T ss_conf 78
No 17
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=84.78 E-value=3.1 Score=21.29 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=55.3
Q ss_pred CCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 56875899962-52137777655543468205899999999998252005753389706888877888279999999974
Q gi|255764508|r 63 KKDGNIIVLLG-NGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLES 141 (242)
Q Consensus 63 ~~~~d~IVVLG-gG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~ 141 (242)
.++.+.||..| ||.... ..=+.+|++=|..... . --++|..++ ..+.+.+.+.
T Consensus 127 gk~i~~VV~IGIGGS~LG--------------p~~~~~AL~~~~~~~~---~-i~FvsNvD~--------~~l~~~l~~l 180 (525)
T PRK00179 127 GKDITDVVNIGIGGSDLG--------------PRAVIEALRPYFDNLL---R-VHFVSNVDP--------TYIAEVLKKL 180 (525)
T ss_pred CCCCCEEEEECCCCCCHH--------------HHHHHHHHHHHCCCCC---E-EEEECCCCH--------HHHHHHHHHC
T ss_conf 983343899665660176--------------9999999986466984---1-799678886--------8999999728
Q ss_pred CCCHHHHHCCHHHHHHHH---HHHHHHHHHHHCCC------CCEEEECCHHHH
Q ss_conf 999878111101466577---79999999762368------640885345889
Q gi|255764508|r 142 GVERDDIKLETQSLDTFQ---NAQFSSSMIKNMQG------KNIILVSSAYHL 185 (242)
Q Consensus 142 Gv~~~~I~~e~~s~nT~e---na~~~~~il~~~~~------~~vilVTsa~Hm 185 (242)
--.+.-+++-+||.+|.| |+...++++.+++. ++++.||++---
T Consensus 181 dpe~TLfiv~SKSftT~ETl~N~~~a~~wl~~~~g~~~~~~~h~vavT~~~~~ 233 (525)
T PRK00179 181 DPKTTLFIVISKSGTTTETATNFRIARDWLLKKGGKELEAAKHFVAVTDNAKG 233 (525)
T ss_pred CHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCHHH
T ss_conf 92233899966987828899999999999998379834365525564288578
No 18
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=84.42 E-value=3.2 Score=21.19 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH--HHHHHHHHHCCCCHHHHHCCH
Q ss_conf 9999999825200575338970688887788827--999999997499987811110
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES--IVYNNKLLESGVERDDIKLET 152 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea--~~m~~~l~~~Gv~~~~I~~e~ 152 (242)
..|+-|.+..+. .....+|=|. +....|+-|+ ..++.++..+||++++-+.+.
T Consensus 13 mtA~~L~~~~~~-~~~ItlIES~-~i~~iGVGE~T~p~~~~~l~~lGI~e~~fm~~~ 67 (457)
T pfam04820 13 MAAAALARALKG-GLDVTLVESE-EIGTVGVGEATIPSIRTFNRMLGIDEAEFMRAT 67 (457)
T ss_pred HHHHHHHHHCCC-CCEEEEEECC-CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 999999986599-9879999679-999878457637999999998399989999973
No 19
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=83.36 E-value=3.5 Score=20.91 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=56.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882--79999999974999878111101466577799999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
+-.|.++|.. +|.+-+|........+ -...++.+.+.|++.........+.+..+-....+++++.......+
T Consensus 108 ~~~L~~~G~~-----~i~~i~~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 182 (268)
T cd06273 108 ARHLIALGHR-----RIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAV 182 (268)
T ss_pred HHHHHHCCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9999872987-----47999468777778999999999999980999871420315789899999999998479998489
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+..++.....++..+++.|+++
T Consensus 183 ~~~nd~~A~g~i~~l~~~g~~i 204 (268)
T cd06273 183 ICGNDVLALGALYEARRLGLSV 204 (268)
T ss_pred EECCHHHHHHHHHHHHHCCCCC
T ss_conf 9778799999999999639999
No 20
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=83.02 E-value=3.6 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCHHHHHCC
Q ss_conf 799999999749998781111
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLE 151 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e 151 (242)
.+.+++.+.+.|||+++|..-
T Consensus 155 se~~k~~l~~~Gv~~~kI~vt 175 (388)
T PRK13609 155 TDHVKEVMVDIGVPAEQIVET 175 (388)
T ss_pred CHHHHHHHHHHCCCHHHEEEE
T ss_conf 899999999809988899988
No 21
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=82.31 E-value=3.9 Score=20.65 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=53.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH-HHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999-99997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQF-SSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~-~~~il~~~~~~~vi 177 (242)
+-.|+++|.. +|.+-+|........| -+..++.+.+.|++.+..++.. +..+.+.+.. .++++++....+.+
T Consensus 108 ~~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~Gf~~al~~~gl~~~~~~i~~-~~~~~~~g~~~~~~ll~~~~~~~ai 181 (268)
T cd06270 108 TEHLIELGHR-----KIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIE-GDFTEEGGYAAMQELLARGAPFTAV 181 (268)
T ss_pred HHHHHHCCCC-----CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE-CCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9999983998-----389845988883199999999999998599978004761-6776788999889999569998745
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+++..-..++..+++.|+++
T Consensus 182 ~~~nD~~A~g~~~~l~~~g~~v 203 (268)
T cd06270 182 FCANDEMAAGAISALREHGISV 203 (268)
T ss_pred EECCHHHHHHHHHHHHHCCCCC
T ss_conf 5337799999999999829999
No 22
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=80.58 E-value=4.4 Score=20.26 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH---------HHHHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 4682058999999999982520057533897068888778882---------7999999997499987811110146
Q gi|255764508|r 88 EPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE---------SIVYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 88 ~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E---------a~~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
.+...+...+.+-++..++.+. .+|.+.|= ....|..+ |+..+++|++.|++.++|.....+.
T Consensus 12 ~l~~~~~~~L~~ia~~l~~~~~----~~v~v~Gh-tD~~G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~G~ 83 (106)
T cd07185 12 ELTPEAKPLLDKLAEVLKKNPD----AKIRIEGH-TDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83 (106)
T ss_pred EECHHHHHHHHHHHHHHHHCCC----CEEEEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECC
T ss_conf 6198899999999999985899----37999998-489999899899999999999999998499989989999755
No 23
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=80.24 E-value=4.5 Score=20.19 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 589999999999825200575338970688887788827999999997499987-8111101466577799999997623
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERD-DIKLETQSLDTFQNAQFSSSMIKNM 171 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~-~I~~e~~s~nT~ena~~~~~il~~~ 171 (242)
+.+++..|++...+...+. .|++-|.+..+ ..+..+++...|.+.= .=++-.. ..| ++.+..
T Consensus 54 T~e~L~~Aa~~i~~i~~~~---~Il~V~tr~~~-----q~aV~kfA~~tG~~~i~~Rw~pGt----lTN-----~i~~~f 116 (242)
T PTZ00254 54 TWEKIKLAARVIAAVENPA---DVVVVSSRPYG-----QRAILKFSQYTGASFIAGRFTPGT----FTN-----QIQKKF 116 (242)
T ss_pred HHHHHHHHHHHHHHHCCCC---CEEEEECCHHH-----HHHHHHHHHHHCCCEEECCCCCCC----CCC-----HHHHCC
T ss_conf 9999999999999864799---77999838898-----799999999979942405127866----468-----766524
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 68640885345889999999997698189984-26644311-137545788989999999999999998648
Q gi|255764508|r 172 QGKNIILVSSAYHLKRSQLYFQHFGINTKASC-SDYLNAYY-SIIPLSANFYLTELALKEYIGILIAYYRGN 241 (242)
Q Consensus 172 ~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~-~d~~~~~~-~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~ 241 (242)
.-.++++||++-.-.-|...+.+.||.+++.. ||-..... .-+|..+.-..+-..+.-.++.-+.++||.
T Consensus 117 ~eP~lliV~DP~~d~~AV~EA~~~nIPvIal~DTds~p~~VD~~IP~Ndds~~SI~Li~~lLArevl~~rG~ 188 (242)
T PTZ00254 117 QEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDAPLEYVDIAIPCNNRGKKSIAMMYWLLAREVLRLRGT 188 (242)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 688889996675440899999985998898616999953265676568830768999999999999983688
No 24
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=80.12 E-value=4.5 Score=20.19 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC-------CCCH--HHHHHHHHHHCCCCHHHHHCCHHH
Q ss_conf 43468205899999999998252005753389706888877-------8882--799999999749998781111014
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKH-------GLAE--SIVYNNKLLESGVERDDIKLETQS 154 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~-------~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s 154 (242)
...+...+.+.+..-++..++++. .+|++.| ..... ..|| |++.++||+..||++++|.....+
T Consensus 91 s~~l~p~~~~~L~~~a~~L~~~p~----~~i~V~G-HTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~~i~~~G~G 163 (190)
T COG2885 91 SSVLKPKAQATLDELAKYLKKNPI----TRILVEG-HTDSTGSDEYNQALSERRAEAVADYLVSQGVVADRISTVGYG 163 (190)
T ss_pred CHHHCHHHHHHHHHHHHHHHHCCC----CEEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 344398999999999999987899----7799975-578879867876888999999999999849970117898616
No 25
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=79.93 E-value=4.7 Score=20.12 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH--HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCC
Q ss_conf 999999825200575338970688887788827--9999999974999878111101466577799-9999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES--IVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea--~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~ 175 (242)
.+-.|+++|.. +|.+-||.... ...+. +..++.+.+.|++.+..+..... .+.+++. ..+++++..+..+
T Consensus 111 a~~~L~~~G~~-----~I~~i~~~~~~-~~~~~R~~Gf~~al~~~gl~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~p~ 183 (268)
T cd06271 111 AVRRLIALGHR-----RIALLNPPEDL-TFAQHRRAGYRRALAEAGLPLDPALIVSGD-MTEEGGYAAAAELLALPDRPT 183 (268)
T ss_pred HHHHHHHHCCC-----EEEECCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999985987-----48754887546-079999999999999839997711365068-757779999999996599986
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 088534588999999999769818
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.++.+|+....-++..+++.|+++
T Consensus 184 Ai~~~nD~~A~g~l~~l~~~g~~v 207 (268)
T cd06271 184 AIVCSSELMALGVLAALAEAGLRP 207 (268)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 899777799999999999829998
No 26
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=79.67 E-value=4.7 Score=20.07 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCC-CCC-CHHHHHHHHHHHC--CCCHHHH---HCCHHHHHHHHHHHHH
Q ss_conf 899999999998252005753389706--88887-788-8279999999974--9998781---1110146657779999
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISG--GDPQK-HGL-AESIVYNNKLLES--GVERDDI---KLETQSLDTFQNAQFS 164 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SG--g~~~~-~~~-~Ea~~m~~~l~~~--Gv~~~~I---~~e~~s~nT~ena~~~ 164 (242)
++.+..-+++.++-++++++..+++-- |+..+ .-. .-++.+++.++.. .+.++.- ++-..+-||.+++...
T Consensus 85 ~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~~a 164 (281)
T COG2240 85 AEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAVKA 164 (281)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHCCHHHEECCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 89999999999998624987389967743679963526431899998642130074887999999849887888999999
Q ss_pred HHHHHHCCCCCEEEECCHHH-H---------HHHHHHHHHC--CCEEEEEECCCC------CCCCCCCCCHHHHHHHHHH
Q ss_conf 99976236864088534588-9---------9999999976--981899842664------4311137545788989999
Q gi|255764508|r 165 SSMIKNMQGKNIILVSSAYH-L---------KRSQLYFQHF--GINTKASCSDYL------NAYYSIIPLSANFYLTELA 226 (242)
Q Consensus 165 ~~il~~~~~~~vilVTsa~H-m---------~RA~~~f~~~--gi~~~p~~~d~~------~~~~~~~p~~~~l~~~~~~ 226 (242)
++.+.+.++ ++++|||..- + ......+.+. .++..|..|... .....=.+...++..+..+
T Consensus 165 a~~L~~~gp-~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~GtGDL~sallla~lL~g~~~~~al~~~~~~ 243 (281)
T COG2240 165 ARKLGADGP-KIVLVTSLSRAGMSTGNFEMLGKSAELAWHISPLVPFIPNGTGDLFSALLLARLLEGLSLTQALERATAA 243 (281)
T ss_pred HHHHHHCCC-CEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999751489-8899953453678773499961312233234322788999824999999999997599789999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|255764508|r 227 LKEYIGI 233 (242)
Q Consensus 227 ~~E~ig~ 233 (242)
++|-+..
T Consensus 244 V~evl~~ 250 (281)
T COG2240 244 VYEVLQE 250 (281)
T ss_pred HHHHHHH
T ss_conf 9999999
No 27
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.29 E-value=4.9 Score=19.99 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=54.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|+++|..+ -.+++|.... ....+ -+..++.+.+.|++.+.-++.....++.+......+++++++..+.++
T Consensus 107 ~~~L~~~G~~~----i~~i~~~~~~-~~~~~R~~Gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 181 (265)
T cd06290 107 TQHLIDLGHRR----IAHITGPRGH-IDARDRLAGYRKALEEAGLEVQPDLIVQGDFEEESGLEAVEELLQRGPDFTAIF 181 (265)
T ss_pred HHHHHHHCCCC----EEEECCCCCC-HHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99999829986----5560488787-019999999999999869999888834166771789999999997199988421
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.+|+.--.-++..++..|+++
T Consensus 182 ~~nD~~A~g~~~~~~~~g~~v 202 (265)
T cd06290 182 AANDQTAYGARLALYRRGLRV 202 (265)
T ss_pred ECCHHHHHHHHHHHHHHCCCC
T ss_conf 057899999999999809999
No 28
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.28 E-value=4.9 Score=19.99 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=56.3
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 999999982520057533897068888778882-7999999997499987811110146657779999999762368640
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
..+-.|.++|..+ +.+-+|........| -+..++.+.+.|++.+..+......+..+-....+++++.......
T Consensus 106 ~a~~~L~~~G~~~-----i~~i~~~~~~~~~~~R~~gf~~a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~da 180 (269)
T cd06288 106 DATRHLLAAGHRR-----IAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTA 180 (269)
T ss_pred HHHHHHHHHCCCC-----EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 9999999848875-----57874898875799999999999997699866422412677667777777999855899861
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++.+|+.-...++..+++.|+++
T Consensus 181 i~~~~d~~A~g~~~~l~~~gi~v 203 (269)
T cd06288 181 IFCGNDRMAMGAYQALLERGLRI 203 (269)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 01477899999999999859999
No 29
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=78.92 E-value=5 Score=19.92 Aligned_cols=58 Identities=14% Similarity=0.343 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHH-HHHHHHHHHHHHHHHCC---CCCEEEECC-HHHHHHH
Q ss_conf 7999999997499987811110146-65777999999976236---864088534-5889999
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSL-DTFQNAQFSSSMIKNMQ---GKNIILVSS-AYHLKRS 188 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~-nT~ena~~~~~il~~~~---~~~vilVTs-a~Hm~RA 188 (242)
.+-+++.+++.|||+++|..-.-.- ..+.....-.+..++.+ .+..+||+. ++.+.+.
T Consensus 155 ~~~~~~~l~~~Gi~~~kI~vtGIPV~~~F~~~~~~~~~~~~~~l~~~~~~iLv~gG~~G~~~~ 217 (391)
T PRK13608 155 TKETKQDFIDVGIDPSTVKVTGIPIDNKFETPINQKQWLIDNNLDPDKQTILMSAGAFGVSKG 217 (391)
T ss_pred CHHHHHHHHHCCCCHHHEEEEEEECCHHHCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHH
T ss_conf 999999999849997688998343586773755678999971899777689996886310246
No 30
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=78.27 E-value=2.5 Score=21.88 Aligned_cols=116 Identities=18% Similarity=0.146 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 54568758999625213777765554346820589999999999825200575338970688887788827999999997
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
....+.|-||..|-|-. ..+.|+...+.+-+++.. |+++- ++|-..
T Consensus 22 ~~~e~~~~iv~~GmGGS--------------Gi~G~~~~~~~~~~~~~~-----Pvfvv---------------~DY~~p 67 (338)
T TIGR02128 22 LKIEAYDEIVISGMGGS--------------GIAGRILSELLLEKSFEV-----PVFVV---------------KDYRLP 67 (338)
T ss_pred CCCCCCCCEEEECCCHH--------------HHHHHHHHHHHHHHCCCC-----CEEEE---------------CCCCCC
T ss_conf 13465562278725657--------------899999999865324788-----88887---------------077896
Q ss_pred CCCC-HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCCC
Q ss_conf 4999-8781111014665777999999976236864088534588999999999769818998426644---3111375
Q gi|255764508|r 141 SGVE-RDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLN---AYYSIIP 215 (242)
Q Consensus 141 ~Gv~-~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~---~~~~~~p 215 (242)
.-++ +..++.-.-|=||.|.......-.++. .+++.|||. -|-.-++++.|++++-.|..+++ .+++|+|
T Consensus 68 ~~v~~~~~lIAvSYSGNT~ETl~~~e~A~~~~--~~~~aITSG---G~L~e~A~e~g~~~i~iP~G~qPR~a~pysfiP 141 (338)
T TIGR02128 68 AFVDGKTLLIAVSYSGNTEETLSAVEEAKKKG--AKVIAITSG---GKLEEMAKEEGLDVIKIPKGLQPRAALPYSFIP 141 (338)
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECC---CHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 98898517999861786689999999998657--955999448---538863011487568828861132104056899
No 31
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=77.82 E-value=5.4 Score=19.71 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 999999974999878111101466577799-999997623686408853458899999999976981
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
..++.+.+.|++......... ..+.+++. ..+++++++...+.++.+++..-..++..+++.|++
T Consensus 137 gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~~D~~A~g~~~~l~~~g~~ 202 (264)
T cd06267 137 GYREALEEAGIPLDEELIVEG-DFSEESGYEAARELLASGERPTAIFAANDLMAIGALRALRELGLR 202 (264)
T ss_pred HHHHHHHHCCCCCCHHEEECC-CCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 999999986999885307527-897799999999999659999899878879999999999982999
No 32
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=76.55 E-value=5.8 Score=19.48 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=54.5
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEEE
Q ss_conf 999982520057533897068888778882-7999999997499987811110146657779-99999976236864088
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vil 178 (242)
-.|.++|.. ++.+-+|+.......| -+...+.+.+.|++.+........ .|++++ ...+++++..+..+.++
T Consensus 108 ~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ai~ 181 (267)
T cd06284 108 DHLISLGHR-----RIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEGD-FSLESGYAAARRLLALPDRPTAIF 181 (267)
T ss_pred HHHHHHCCC-----EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-CCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 999970997-----69996288887259999999999999839985512773278-767778899999996599998026
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
.+++.....++..++..|++
T Consensus 182 ~~nD~~A~g~~~~l~~~g~~ 201 (267)
T cd06284 182 CFSDEMAIGAISALKELGLR 201 (267)
T ss_pred ECCCHHHHHHHHHHHHCCCC
T ss_conf 57868899999999983999
No 33
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=76.12 E-value=4.7 Score=20.12 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=44.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHH-H---HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8758999625213777765554346820589-9---99999999825200575338970688887788827999999997
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYS-R---IFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~-R---l~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
+.+++||=|=| ...-.|++-..-+.++.- | +=.|+.|. ++++++|+.||||..-|+-=+...+.--.
T Consensus 27 P~qvvVVSGIG--CS~ktPhY~n~~g~h~LHGRA~P~A~G~KlA------NP~L~Viv~GGDGD~~GIG~~Hfva~gRR- 97 (302)
T TIGR02177 27 PEQVVVVSGIG--CSAKTPHYVNVNGFHGLHGRALPVATGIKLA------NPKLKVIVVGGDGDLYGIGGNHFVAAGRR- 97 (302)
T ss_pred CCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC------CCCCEEEEEECCCCCHHHHHHHHHHHHCC-
T ss_conf 85279981313--1134773001366452335631011012010------89846898606864101105778754114-
Q ss_pred CCCCHHHHHCCHHH
Q ss_conf 49998781111014
Q gi|255764508|r 141 SGVERDDIKLETQS 154 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s 154 (242)
.++-.-|+-+|+.
T Consensus 98 -N~dIt~l~~DN~V 110 (302)
T TIGR02177 98 -NVDITVLVHDNQV 110 (302)
T ss_pred -CCCCEEEEECCEE
T ss_conf -7882488424705
No 34
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.99 E-value=6 Score=19.39 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf 999999982520057533897068888778882-7999999997499987811110146657779-99999976236864
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKN 175 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~ 175 (242)
..+-.|.++|.. +|.+-+|........+ -+..++.+.+.|++.+..++.... .+.|.+ ...++++++.+...
T Consensus 107 ~a~~~L~~~G~~-----~I~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~ll~~~~~~~ 180 (270)
T cd06296 107 AATEHLLELGHR-----RIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGD-FSTESGFRAAAELLALPERPT 180 (270)
T ss_pred HHHHHHHHHCCC-----CEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHEEECC-CHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999985897-----28884599886559999999999999869998855533065-017899999999995499886
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 088534588999999999769818
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.++.+|+.....++..+++.|+++
T Consensus 181 aii~~~D~~A~g~~~~l~~~gi~v 204 (270)
T cd06296 181 AIFAGNDLMALGVYEAARERGLRI 204 (270)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 203478689999999999869999
No 35
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=75.18 E-value=6.3 Score=19.25 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH--HHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf 999999825200575338970688887788827--999999997499987811110146657779-99999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES--IVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea--~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~ 175 (242)
.+-.|.++|.. +|.+=+|..... .++. +..++.+.+.|++...++..+.. +|.++. ....++++.++..+
T Consensus 107 a~~~L~~~G~~-----~i~~i~~~~~~~-~~~~R~~G~~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~d 179 (268)
T cd01575 107 MARHLLARGYR-----RIGFLGARMDDT-RAQQRLEGFRAALRAAGLDPPLVVTTPEP-SSFALGRELLAELLARWPDLD 179 (268)
T ss_pred HHHHHHHCCCC-----EEEEECCCCCCH-HHHHHHHHHHHHHHHCCCCCCEEEEECCC-CCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999974997-----699984898873-69999999999999769898808995489-988999999999995699983
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++.+|+.-..-++..++..|+.
T Consensus 180 ai~~~nD~~A~g~~~~l~~~g~~ 202 (268)
T cd01575 180 AVFCSNDDLALGALFECQRRGIS 202 (268)
T ss_pred EEEECCHHHHHHHHHHHHHHCCC
T ss_conf 79987889999999999983899
No 36
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=74.83 E-value=6.5 Score=19.20 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=55.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882-79999999974999878111101466577799-999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vi 177 (242)
+-.|++.|.. +|.+-||........+ -+..++.+.+.|++.+.-++.... .+.+... ...+++.+....+.+
T Consensus 168 ~~~L~~~Ghr-----rI~~i~~~~~~~~~~~R~~G~~~al~~~gl~~~~~~v~~~~-~~~~~~~~~~~~ll~~~~~~tAi 241 (346)
T PRK10401 168 TRMLLNNGHQ-----RIGYLSSSHGIEDDAMRKAGWLSALKEQGIIPPESWIGTGT-PDMQGGEAAMVELLGRNLQLTAV 241 (346)
T ss_pred HHHHHHCCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECC-CCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999962998-----28999479887168999999999999849998701487268-75788999999998159998861
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+|+.--.-++..++..|+.+
T Consensus 242 ~~~nD~~A~g~l~al~~~Gl~V 263 (346)
T PRK10401 242 FAYNDNMAAGALTALKDNGIAI 263 (346)
T ss_pred EECCHHHHHHHHHHHHHCCCCC
T ss_conf 4448899999999999859989
No 37
>pfam01650 Peptidase_C13 Peptidase C13 family. Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed.
Probab=74.74 E-value=3.5 Score=20.95 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=6.0
Q ss_pred HCCCCCEEEECCHH
Q ss_conf 23686408853458
Q gi|255764508|r 170 NMQGKNIILVSSAY 183 (242)
Q Consensus 170 ~~~~~~vilVTsa~ 183 (242)
++..++++++-++-
T Consensus 147 ~~ry~~lvf~veaC 160 (258)
T pfam01650 147 RGKYKKLVFYVEAC 160 (258)
T ss_pred HCCHHEEEEEEECC
T ss_conf 36501688764100
No 38
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=74.11 E-value=6.7 Score=19.08 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=54.9
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEEEE
Q ss_conf 99982520057533897068888778882-79999999974999878111101466577799-99999762368640885
Q gi|255764508|r 102 RLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNIILV 179 (242)
Q Consensus 102 ~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vilV 179 (242)
.|++.|.. +|.+-|+........| -+..++.+.+.|++.+......... +.+.+. ..++++++++..+.++.
T Consensus 119 ~L~~~G~~-----~I~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ai~~ 192 (275)
T cd06295 119 HLLARGRR-----RIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDF-TEESGRAAMRALLERGPDFDAVFA 192 (275)
T ss_pred HHHHHCCC-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCC-CHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99980998-----798705886672699999999999998699999417996577-668799998889854999870341
Q ss_pred CCHHHHHHHHHHHHHCCCEE
Q ss_conf 34588999999999769818
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~~ 199 (242)
+++.-.--++..+++.|+++
T Consensus 193 ~nD~~A~g~~~~~~~~g~~i 212 (275)
T cd06295 193 ASDLMALGALRALREAGRRV 212 (275)
T ss_pred CCCHHHHHHHHHHHHCCCCC
T ss_conf 47587899999999749998
No 39
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=73.35 E-value=7 Score=18.96 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHCCCCCCCCEEE-ECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9998252005753389-7068888778882-7999999997499987811110146657779999999762368640885
Q gi|255764508|r 102 RLYKSCKQHSMHCTII-ISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILV 179 (242)
Q Consensus 102 ~L~~~~~~~~~~~~ii-~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilV 179 (242)
.|...|-. +|- ++| ........+ .+..++.+.+.|++...+..++. .+..+-....+++++++.....+++
T Consensus 112 hLi~~Ghr-----rIa~i~g-~~~~~~~~~R~~gy~~a~~~~gl~~~~~~~~~~-~~~~~g~~a~~~ll~~~~~~~AI~~ 184 (269)
T cd06287 112 HLRAQGAR-----QIALIVG-SARRNSYLEAEAAYRAFAAEHGMPPVVLRVDEA-GGEEAGYAACAQLLAQHPDLDALCV 184 (269)
T ss_pred HHHHCCCC-----EEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99987998-----7999968-986758999999999999877999847997688-9859999999999717999977998
Q ss_pred CCHHHHHHHHHHHHHCCCEE
Q ss_conf 34588999999999769818
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~~ 199 (242)
+++..-.-++..++..|+.+
T Consensus 185 ~nD~~A~g~l~al~~~Gl~V 204 (269)
T cd06287 185 PVDAFAVGAVRAATELGRAV 204 (269)
T ss_pred ECHHHHHHHHHHHHHHCCCC
T ss_conf 27999999999999858877
No 40
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=72.88 E-value=7.2 Score=18.89 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH-HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCC-C
Q ss_conf 9999999825200575338970688887788827-9999999974999878111101466577799-99999762368-6
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES-IVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQG-K 174 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea-~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~-~ 174 (242)
..+-.|++.|.. +|.+-||........|- +..++.+.+.|++.+..++..... +.|... ..++++.+++. .
T Consensus 106 ~a~~~L~~~Ghr-----~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~i~~~~~-~~~~g~~~~~~~l~~~~~~p 179 (264)
T cd06274 106 ELTRELLAAPPE-----EVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGY-SPESGYQLMAELLARLGRLP 179 (264)
T ss_pred HHHHHHHHCCCC-----EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHCCCCC
T ss_conf 999999985996-----699976898773099999999999997799877407982688-87899999999998656887
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 4088534588999999999769818
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.++.+++....-++..++..|+.+
T Consensus 180 ~ai~~~nd~~a~g~l~~l~~~g~~v 204 (264)
T cd06274 180 RALFTTSYTLLEGVLRFLRERPGLA 204 (264)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 4220176999999999999859999
No 41
>PRK09330 cell division protein FtsZ; Validated
Probab=72.86 E-value=2.7 Score=21.68 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=43.6
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 38970688887788827999999997499987811---110146657779999999762368640885345
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA 182 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa 182 (242)
.++++.|.|.+.|.--|.+.++.+.++|+-.=.|+ +.-+++...++|..--+-|+++ .+.+|+|-+.
T Consensus 99 mvFItAGmGGGTGTGAaPviA~iAke~g~LtV~vVT~PF~fEG~~R~~~A~~Gi~~L~~~-vDtlIvIpNd 168 (387)
T PRK09330 99 MVFITAGMGGGTGTGAAPVVAEIAKEMGILTVGVVTKPFSFEGKKRMKQAEEGIEELRKH-VDTLIVIPND 168 (387)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHH-CCEEEEECCH
T ss_conf 799962667887776048999988557984999995895101787999999999999986-8879997608
No 42
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=72.35 E-value=7.4 Score=18.82 Aligned_cols=93 Identities=9% Similarity=0.041 Sum_probs=51.7
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 999999982520057533897068888778882-7999999997499987811110146657779999999762368640
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
..+-.|.++|.. ++.+-||........+ -+..++.+.+.|++...++..+ .+.+++....+.+.+++..+.
T Consensus 106 ~a~~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~G~~~al~~~~i~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~a 177 (264)
T cd01574 106 LATEHLLELGHR-----TIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPVLEGD---WSAESGYRAGRELLREGDPTA 177 (264)
T ss_pred HHHHHHHHCCCC-----CEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC---CCHHHHHHHHHHHHHCCCCCE
T ss_conf 999999984998-----273258997775799999999999998698974488668---997999999999983799968
Q ss_pred EEECCHHHHHHHHHHHHHCCCE
Q ss_conf 8853458899999999976981
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
++++++.---.++..+++.|++
T Consensus 178 ii~~~D~~A~g~i~~l~~~g~~ 199 (264)
T cd01574 178 VFAANDQMALGVLRALHELGLR 199 (264)
T ss_pred EEECCHHHHHHHHHHHHHHCCC
T ss_conf 9636429999999999982998
No 43
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.22 E-value=7.4 Score=18.80 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=56.6
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|+..|.. +|.+-||........| -+..++.+.+.|++.+.........+..+-....+++++.+...+.++
T Consensus 114 ~~~L~~~Ghr-----~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~tai~ 188 (270)
T cd06294 114 TEYLIKLGHK-----KIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIV 188 (270)
T ss_pred HHHHHHCCCC-----EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999976995-----69998189986589999999999999869997733331377667889999999984699984899
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
..|+....-++..++..|+++
T Consensus 189 ~~nD~~A~g~~~al~~~g~~i 209 (270)
T cd06294 189 ATDDLLALGVLKVLNELGLKV 209 (270)
T ss_pred ECCHHHHHHHHHHHHHCCCCC
T ss_conf 877499999999999839999
No 44
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative; InterPro: IPR011916 This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II..
Probab=72.03 E-value=4.2 Score=20.41 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCCHH--HHHHHHHHHCCCCHHHHHCCHHHH---HHHHHHHHHH--HHHHHCCCCCEEEECCHHHHHHHHHHHH-HCCCE
Q ss_conf 88827--999999997499987811110146---6577799999--9976236864088534588999999999-76981
Q gi|255764508|r 127 GLAES--IVYNNKLLESGVERDDIKLETQSL---DTFQNAQFSS--SMIKNMQGKNIILVSSAYHLKRSQLYFQ-HFGIN 198 (242)
Q Consensus 127 ~~~Ea--~~m~~~l~~~Gv~~~~I~~e~~s~---nT~ena~~~~--~il~~~~~~~vilVTsa~Hm~RA~~~f~-~~gi~ 198 (242)
+++|| +.|+..|-+.||.+.=|++.+.|| -=|||.++|+ +=|...|+. ++.||+.=-.--.+..+ .+|+.
T Consensus 164 ~y~~adw~a~ralL~eaGv~~~YiVIqPtsRwfFKCW~~drfsali~AL~a~Gy~--vVLTsgPD~~e~~mV~~I~~g~~ 241 (347)
T TIGR02201 164 SYSEADWKAVRALLDEAGVSENYIVIQPTSRWFFKCWEDDRFSALIDALAAEGYE--VVLTSGPDKDELKMVDEIAAGCR 241 (347)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCE--EEECCCCCHHHHHHHHHHHHCCC
T ss_conf 7886459999985232579998178736736310166213589999988518956--98828989867999999971168
Q ss_pred EE
Q ss_conf 89
Q gi|255764508|r 199 TK 200 (242)
Q Consensus 199 ~~ 200 (242)
..
T Consensus 242 ~~ 243 (347)
T TIGR02201 242 SD 243 (347)
T ss_pred CC
T ss_conf 98
No 45
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=71.74 E-value=2.1 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=18.5
Q ss_pred HCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 1245444645456875899962521
Q gi|255764508|r 52 SYQRPLLSPQWKKDGNIIVLLGNGT 76 (242)
Q Consensus 52 ~~~~~~~~~~~~~~~d~IVVLGgG~ 76 (242)
.+.+.-..|++++.+|+|||-|||.
T Consensus 17 ~W~~~Wr~P~PK~~YDviIvGgGGH 41 (407)
T TIGR01373 17 GWKPAWRSPEPKPEYDVIIVGGGGH 41 (407)
T ss_pred CHHHHCCCCCCCCCCCEEEECCCCC
T ss_conf 3077177733688546788868860
No 46
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=71.54 E-value=7.7 Score=18.70 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=51.9
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCC-----CCCEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 799999999749998781111014665777999999976236-----864088534588999999999769818998426
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQ-----GKNIILVSSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~-----~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
+..+.+.+......+.-+++-+||-+|.|.....+.+++..+ .++++.||++-- -....+...|+.+.+.|-+
T Consensus 98 p~~~~~~l~~l~~~~TlfiViSKSgtT~ET~~~~~~~~~~~~~~~~~~~~~i~iTd~~s--~L~~~a~~~~~~~f~ip~~ 175 (409)
T PRK03868 98 PISINKTLKKINLEETLFIVISKSGTTIETISIFKYILEHFKLDKLELKNFLVITDPDS--PLEQFAKENGIKSFNIPKN 175 (409)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH--HHHHHHHHCCCEEEECCCC
T ss_conf 89999999608935179999859998389999999999972455330025799936841--6665444258608726777
No 47
>PRK10808 outer membrane protein A; Reviewed
Probab=70.21 E-value=8.2 Score=18.51 Aligned_cols=85 Identities=12% Similarity=0.152 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC---CCC---CCCCCH--HHHHHHHHHHCCCCHHHHHCCHHH---
Q ss_conf 434682058999999999982520057533897068---888---778882--799999999749998781111014---
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGG---DPQ---KHGLAE--SIVYNNKLLESGVERDDIKLETQS--- 154 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg---~~~---~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s--- 154 (242)
...+...+.+.++.-+.-.++...+ ...|.+.|= .|+ ....|| |+..++||++.||++++|..+..+
T Consensus 232 ss~l~p~~~~~L~~~~~~l~~~~~~--~~~i~v~GhtD~~G~~~yN~~LS~~RA~~V~~~l~~~Gi~~~~i~~~g~Ge~~ 309 (347)
T PRK10808 232 KATLKPEGQQALDQLYSQLSNLDPK--DGSVVVLGYTDRIGSDAYNQALSERRAQSVVDYLISKGIPADKISARGMGESN 309 (347)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCC
T ss_conf 0205866899999999999745877--65189998369988878879999999999999999869984518999864668
Q ss_pred ---HHHHHHHHHHHHHHHHCC
Q ss_conf ---665777999999976236
Q gi|255764508|r 155 ---LDTFQNAQFSSSMIKNMQ 172 (242)
Q Consensus 155 ---~nT~ena~~~~~il~~~~ 172 (242)
.|+.++.+.-..++...-
T Consensus 310 pva~n~~~~~~~~~~li~c~a 330 (347)
T PRK10808 310 PVTGNTCDNVKPRAALIDCLA 330 (347)
T ss_pred CCCCCCCCCCCCCCCHHHCCC
T ss_conf 888897702244300010247
No 48
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=69.85 E-value=8.4 Score=18.46 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 999999997499987811110146657779-99999976236864088534588999999999769818
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+++.+.+.|.+....+.+... ++.+.+ ...+++++.++....++.+|+.-..-++..++..|+++
T Consensus 137 ~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~aii~~~D~~A~g~~~~l~~~g~~v 204 (267)
T cd06283 137 EGFKEALAEHGIGVNEELIEIDD-EDADELDERLRQLLNKPKKKTAIFAANGLILLEVLKALKELGIRI 204 (267)
T ss_pred HHHHHHHHHCCCCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99999999759976514898335-426779999999984799986420377099999999999829988
No 49
>PRK13018 cell division protein FtsZ; Provisional
Probab=69.72 E-value=4.2 Score=20.42 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=35.5
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 8970688887788827999999997499987811---110146657779999999762368640885345
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA 182 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa 182 (242)
++++.|.|.+.|.--|.+.++.+.++|+-.=.|+ +.-+++...++|..--+-|+++ .+.+++|.+.
T Consensus 115 VFItAGmGGGTGTGAAPVIA~iAke~GaLtVavVT~PF~fEG~~R~~~A~~Gl~~L~~~-vDtlIvIpNd 183 (387)
T PRK13018 115 VFVTAGMGGGTGTGAAPVVAEIAKEQGALVIGVVTKPFKFEGRARMQKAEEGIERLREA-ADTVIVIDNN 183 (387)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH-CCEEEEECHH
T ss_conf 99995347851377789999999981993999944895777689999999999999986-9969997328
No 50
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=68.90 E-value=1.8 Score=22.75 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=48.5
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH-H
Q ss_conf 897068888778882799999999749998781111014665777999999976236864088534588999999999-7
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ-H 194 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~-~ 194 (242)
+++|-|-|.+.|+--|.+.++.+-++| .=+|-+||-||-+=+.+..-+ .
T Consensus 110 VFitAGmGGGTGTGAAPVvA~~AK~~G------------------------------aLTvavVT~PF~~EG~kr~~~A~ 159 (365)
T TIGR00065 110 VFITAGMGGGTGTGAAPVVAKIAKELG------------------------------ALTVAVVTKPFKFEGKKRRKKAE 159 (365)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCC------------------------------EEEEEEECCCCCCHHHHHHHHHH
T ss_conf 899725866866663578999997579------------------------------06999842874101589999999
Q ss_pred CCCEEEEEECCC--------CCCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf 698189984266--------44311-137545788989999999
Q gi|255764508|r 195 FGINTKASCSDY--------LNAYY-SIIPLSANFYLTELALKE 229 (242)
Q Consensus 195 ~gi~~~p~~~d~--------~~~~~-~~~p~~~~l~~~~~~~~E 229 (242)
.||+----.||- .-... .-.|..+.|...+..+++
T Consensus 160 ~Gl~~L~~~~Dt~ivIPNdkLL~v~p~~~p~~~AF~~AD~vL~~ 203 (365)
T TIGR00065 160 EGLERLKQAVDTLIVIPNDKLLEVVPNNLPLNDAFKVADDVLRR 203 (365)
T ss_pred HHHHHHHHHCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 87898765568478826646888606898889999999999997
No 51
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; InterPro: IPR006375 This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (5.3.1.8 from EC) (PMI) and mannose-1-phosphate guanylyltransferase (2.7.7.22 from EC) in Pseudomonas aeruginosa, Xanthomonas campestris, and Acetobacter xylinus. The literature on the enzyme from Escherichia coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain lies at the C-terminal. ; GO: 0008928 mannose-1-phosphate guanylyltransferase (GDP) activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=68.56 E-value=5.7 Score=19.56 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHC--CCCCEEEECCHHHHHHH
Q ss_conf 5753389706888877888279999999974999878111101466577799999997623--68640885345889999
Q gi|255764508|r 111 SMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNM--QGKNIILVSSAYHLKRS 188 (242)
Q Consensus 111 ~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~--~~~~vilVTsa~Hm~RA 188 (242)
....|++++... ..-..++.+.+.|.+...|++|+.++||..-....+....+. +.+.+++|-.+-|.-+-
T Consensus 49 ~~~~p~~~~n~~-------~~f~~~~~~~~~~~~~~~~~l~p~g~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~ 121 (478)
T TIGR01479 49 DCSSPLVICNEE-------HRFLVAEQLRELGLLASNILLEPVGRNTAPAIALAALLALRRAPGEDPLLLVLAADHVITD 121 (478)
T ss_pred CCCCCEEEECCH-------HHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 223652552420-------3468888898606522221430266641578999999876405787747898615511100
Q ss_pred HHHHHHC
Q ss_conf 9999976
Q gi|255764508|r 189 QLYFQHF 195 (242)
Q Consensus 189 ~~~f~~~ 195 (242)
...|...
T Consensus 122 ~~~~~~~ 128 (478)
T TIGR01479 122 EDAFRAA 128 (478)
T ss_pred HHHHHHH
T ss_conf 3678999
No 52
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=68.38 E-value=9 Score=18.26 Aligned_cols=74 Identities=9% Similarity=0.120 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE--EECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 877888279999999974999878111101466577799999997623686408--85345889999999997698189
Q gi|255764508|r 124 QKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII--LVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 124 ~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi--lVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
.....+..+....++..+|+| ++....+..-..+....++.++..+.+-++ =|-|.||-.|-..+++..|+++.
T Consensus 41 ~m~H~~n~~~~~~~Ae~~gi~---l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~ 116 (223)
T COG2102 41 YMFHTPNLELAELQAEAMGIP---LVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKVY 116 (223)
T ss_pred EEEECCCHHHHHHHHHHCCCC---EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 442222567999998744883---5998347630556999999997376337997343309999999999997297885
No 53
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.29 E-value=9 Score=18.25 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=44.9
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 999999997499987811110146657779-99999976236864088534588999999999769818
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+..++.+.+.|++.+....+. |.|.+ ...+++++.....+.++.+++.....++..++..|+++
T Consensus 134 ~Gf~~al~~~gi~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~l~~l~~~g~~v 198 (263)
T cd06280 134 AGYEDAMRRHGLAPDARFVAP----TAEAAEAALAAWLAAPERPEALVASNGLLLLGALRAVRAAGLRI 198 (263)
T ss_pred HHHHHHHHHCCCCCCEEEECC----CHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 999999997699976378248----76789999999982799997899678899999999999848999
No 54
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=68.21 E-value=9 Score=18.24 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCH-HHHHCCHHHHH--HHHH---------
Q ss_conf 58999999999982520057533897068888778882799999999749998-78111101466--5777---------
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVER-DDIKLETQSLD--TFQN--------- 160 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~-~~I~~e~~s~n--T~en--------- 160 (242)
+..++..|....+...++ .-+|+|-|-+-+. .+..++++...|.+- ..=|+-..=+| |..+
T Consensus 46 T~~~l~~A~~~v~~~~~~--~g~ILfVgTK~~a-----~~~V~~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE 118 (252)
T COG0052 46 TLERLREAYKFLRRIAAN--GGKILFVGTKKQA-----QEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELE 118 (252)
T ss_pred HHHHHHHHHHHHHHHHCC--CCEEEEEECHHHH-----HHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 899999999999999728--9979999520887-----899999999959951327643742447405888999999999
Q ss_pred ---------------HHHHHH---HHHHC-------CCCCEEEECCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCC-C
Q ss_conf ---------------999999---97623-------6864088534588999999999769818998-4266443111-3
Q gi|255764508|r 161 ---------------AQFSSS---MIKNM-------QGKNIILVSSAYHLKRSQLYFQHFGINTKAS-CSDYLNAYYS-I 213 (242)
Q Consensus 161 ---------------a~~~~~---il~~~-------~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~-~~d~~~~~~~-~ 213 (242)
+...++ +.+.. +...+++|+++-|-.=|...+++.||.++.. -||..+...+ -
T Consensus 119 ~~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~ 198 (252)
T COG0052 119 KMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYV 198 (252)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
T ss_conf 87641432100788887777899998740141112679998999688176899999997599989984189997657655
Q ss_pred CCCHHH
Q ss_conf 754578
Q gi|255764508|r 214 IPLSAN 219 (242)
Q Consensus 214 ~p~~~~ 219 (242)
+|..+.
T Consensus 199 IP~Ndd 204 (252)
T COG0052 199 IPGNDD 204 (252)
T ss_pred ECCCCH
T ss_conf 228870
No 55
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=67.33 E-value=9.4 Score=18.13 Aligned_cols=93 Identities=6% Similarity=0.056 Sum_probs=53.2
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEEE
Q ss_conf 999982520057533897068888778882-7999999997499987811110146657779-99999976236864088
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vil 178 (242)
-.|+..|.. +|.+-+|........+ -+..++.+.+.|++.+.-++.+... +.|+. ....++++.....+.++
T Consensus 171 ~~L~~~Ghr-----~Ia~i~~~~~~~~~~~R~~gf~~al~~~gl~~~~~~i~~~~~-~~~~g~~~~~~ll~~~~~ptAi~ 244 (335)
T PRK10703 171 RYLIERGHR-----DIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGDF-EPESGYEAMQQILSQEHRPTAVF 244 (335)
T ss_pred HHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCC-CHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 999975998-----699995887652178999999999998599988132896578-85889999999995699986689
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
..|+....-++..++..|+.+
T Consensus 245 ~~nD~~A~g~~~~l~~~g~~V 265 (335)
T PRK10703 245 CGGDIMAMGAICAADEMGLRV 265 (335)
T ss_pred ECCHHHHHHHHHHHHHCCCCC
T ss_conf 687599999999999719999
No 56
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.09 E-value=9.5 Score=18.10 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=54.1
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|++.|.. ++.+-||........+ -+..++.+.+.|++.+..+..+...+........+++++++...+.+
T Consensus 108 a~~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 182 (268)
T cd06289 108 ATEHLISLGHR-----RIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAI 182 (268)
T ss_pred HHHHHHHHCCC-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999973987-----0999528988706999999999999976998664345316886556999999998469998620
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+-+++.....++..+++.|+++
T Consensus 183 i~~~D~~A~g~l~~l~~~gi~v 204 (268)
T cd06289 183 VCFNDLVAFGAMSGLRRAGLTP 204 (268)
T ss_pred CCCCHHHHHHHHHHHHHCCCCC
T ss_conf 3576899999999999849999
No 57
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=65.97 E-value=10 Score=17.96 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|.+.|.. +|.+-|+........| .+...+.+.+.|++.+.-++.....+..+-....++++++....+.+
T Consensus 102 a~~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~p~Ai 176 (261)
T cd06272 102 AVLYLAEKGHK-----KIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSAEGGDNAAKKLLKESDLPTAI 176 (261)
T ss_pred HHHHHHHCCCC-----CEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99999986998-----2899669888735999999999999985998551389830310367999999998527898610
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+|+.-..-++..+++.|+.
T Consensus 177 ~~~nD~~A~g~~~~l~~~g~~ 197 (261)
T cd06272 177 ICGSYDIALGVLSALNKQGIS 197 (261)
T ss_pred EECCHHHHHHHHHHHHHHCCC
T ss_conf 127689999999999980999
No 58
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=65.59 E-value=10 Score=17.91 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC---CCEEEECCHHHHHH----HHHHHHHCCCEEE
Q ss_conf 8827999999997499987811110146657779999999762368---64088534588999----9999997698189
Q gi|255764508|r 128 LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG---KNIILVSSAYHLKR----SQLYFQHFGINTK 200 (242)
Q Consensus 128 ~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~---~~vilVTsa~Hm~R----A~~~f~~~gi~~~ 200 (242)
..||+.+++.+.++. .+|=-+|.+ .+++|....+-+...+. ..+++..+.||--= |..+.++.+-.++
T Consensus 309 ~~~A~~la~~L~~~N--~~Rk~ie~~---i~~eA~~~~e~~~~~~~~~~~~ivl~~~~WH~GViGIVAsRL~e~y~rP~i 383 (574)
T PRK11070 309 IGEARVLANELDALN--QTRKEIEQG---MQVEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVI 383 (574)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 999999999999989--999999999---999999999987634676771699964886750699999999999799889
No 59
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=65.58 E-value=10 Score=17.91 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=20.6
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 1110146657779999999762368640885345889999999997698189984266
Q gi|255764508|r 149 KLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 149 ~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+.-+.|=||.|.....++-.+. | -+++.|||.=-+.+ ++++.+...+.+|..+
T Consensus 83 IavSySGnTeETL~a~~~A~~r-g-a~vi~ItsGG~L~~---~a~~~~~~~i~vp~g~ 135 (328)
T PRK08674 83 IAVSYSGNTEETLSAVEQAKKR-G-AKIIAITSGGKLAE---MAKEKGVPVIKIPGGY 135 (328)
T ss_pred EEECCCCCCHHHHHHHHHHHHC-C-CCEEEEECCCCHHH---HHHHCCCCEEEECCCC
T ss_conf 9982899977999999999975-9-95899948970678---9987799889426986
No 60
>PRK07232 malic enzyme; Reviewed
Probab=64.72 E-value=4.6 Score=20.16 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCHH-----HHHHHHHHHHHHHHHHH--CCCCCEEEEC-CHHHHHHHHHHHHHCCC
Q ss_conf 279999999974999878111101-----46657779999999762--3686408853-45889999999997698
Q gi|255764508|r 130 ESIVYNNKLLESGVERDDIKLETQ-----SLDTFQNAQFSSSMIKN--MQGKNIILVS-SAYHLKRSQLYFQHFGI 197 (242)
Q Consensus 130 Ea~~m~~~l~~~Gv~~~~I~~e~~-----s~nT~ena~~~~~il~~--~~~~~vilVT-sa~Hm~RA~~~f~~~gi 197 (242)
.+.+.++-+++-||....|.=-+. +.--..+....+.+.++ .+.+||++-- ..--+.||...+...|+
T Consensus 390 v~~ava~aa~~~gva~~~i~d~~~Y~~~L~~rl~~s~~~mr~I~erAK~~pKRIVFpEGEDeRVLrAA~~~~~EGI 465 (753)
T PRK07232 390 IAPAVAKAAMDSGVATRPIADMDAYREKLEAFVYRTGLVMKPIFAKAKKDPKRVVFAEGEEERVLRAAQEVVDEGL 465 (753)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 4299999999748887885559999999998767408899999999974886698258877789999999997698
No 61
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=63.73 E-value=11 Score=17.69 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 999999997499987811110146657779999999762368640885345
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA 182 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa 182 (242)
...+.++.+.||+ +++.....=.+...++-+-+.. .+++|+++
T Consensus 53 p~t~~~~~~~gv~----vi~tpG~GYv~Dl~~al~~l~~----P~lvvsaD 95 (177)
T COG2266 53 PKTKEYLESVGVK----VIETPGEGYVEDLRFALESLGT----PILVVSAD 95 (177)
T ss_pred HHHHHHHHHCCCE----EEECCCCCHHHHHHHHHHHCCC----CEEEEECC
T ss_conf 7699999735936----9975998708999999974499----45998655
No 62
>PRK12862 malic enzyme; Reviewed
Probab=63.64 E-value=4.6 Score=20.18 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCCHHHHH-----CCHHHHHHHHHHHHHHHHHHH--CCCCCEEEEC-CHHHHHHHHHHHHHCCC
Q ss_conf 27999999997499987811-----110146657779999999762--3686408853-45889999999997698
Q gi|255764508|r 130 ESIVYNNKLLESGVERDDIK-----LETQSLDTFQNAQFSSSMIKN--MQGKNIILVS-SAYHLKRSQLYFQHFGI 197 (242)
Q Consensus 130 Ea~~m~~~l~~~Gv~~~~I~-----~e~~s~nT~ena~~~~~il~~--~~~~~vilVT-sa~Hm~RA~~~f~~~gi 197 (242)
.+.+.++-+++-||....|. .|.-..--......-+.+.++ .+.+||++-- ..--+.||...+...|+
T Consensus 396 v~~ava~aa~~sgva~~~i~d~~~y~~~L~~~~~~s~~~mr~I~erAK~~PKRIVFaEGEDeRVLrAA~~~~~EGI 471 (761)
T PRK12862 396 IAPAVAQAAMDSGVATRPIEDMDAYREQLNQFVYHSGLIMKPVFAAAKAAPKRVVFAEGEDERVLRAAQVVVDEGL 471 (761)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 5399999998628876885679999999998867308899999999974886698358877789999999997599
No 63
>PRK09526 lacI lac repressor; Reviewed
Probab=63.29 E-value=11 Score=17.64 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=55.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|+..|.. +|.+-||........+ .+..++.+.+.|+....++..+. +..+......+++.+....+.++
T Consensus 173 ~~~L~~~Ghr-----~I~~i~~~~~~~~~~~R~~Gf~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~ptai~ 245 (342)
T PRK09526 173 VEHLVELGHQ-----QIALLAGPLSSVSARLRLAGWLEYLTRNQLSPIAVREGDW--SAMSGYQQTLQMLNEGPVFTAVL 245 (342)
T ss_pred HHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC--CHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999975997-----5999958976600999999999999977989616995689--87899999999983699997587
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++++..-..++..+++.|+.+
T Consensus 246 ~~~D~~A~g~i~~l~~~g~~v 266 (342)
T PRK09526 246 VANDQMALGVLRALHESGLRV 266 (342)
T ss_pred ECCHHHHHHHHHHHHHHCCCC
T ss_conf 567799999999999809999
No 64
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.63 E-value=12 Score=17.56 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 99999997499987811110146657779999-9997623686408853458899999999976981
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
..++.+.+.|++.+...+-..+.+|.|..... +++++.+...+.++.+++.--.-++..++..|++
T Consensus 154 G~~~al~~~gl~~~~~~i~~~~~~~~~~g~~~~~~ll~~~~~ptai~~~nD~~A~g~~~~l~~~Gi~ 220 (283)
T cd06279 154 GYLEALEEAGIDISDVPIWEIPENDRASGEEAARELLDASPRPTAILCMSDVLALGALQVARELGLR 220 (283)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 9999999859997720578459999999999999999559999669857729999999999981899
No 65
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=62.60 E-value=12 Score=17.56 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 058999999999982520057533897068888778882799999999
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLL 139 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~ 139 (242)
+..+|+.++++...+- .+ -+|+|||-|+.++---++++++++-
T Consensus 45 D~~~~I~~~l~~a~~r-~D----~vI~tGGLGPT~DDiT~e~vAka~g 87 (255)
T COG1058 45 DNPDRIVEALREASER-AD----VVITTGGLGPTHDDLTAEAVAKALG 87 (255)
T ss_pred CCHHHHHHHHHHHHHC-CC----EEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999718-99----8998798589962768999999829
No 66
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=61.96 E-value=12 Score=17.48 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 2521377776555434682058999999999982520057533897068
Q gi|255764508|r 73 GNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGG 121 (242)
Q Consensus 73 GgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg 121 (242)
|||++.+...|..| -.-..+|.+.++..+.+.-|-.||-
T Consensus 39 gGGVT~SGGEpl~Q----------~~F~~ellk~~k~~gihtaieTsG~ 77 (213)
T PRK10076 39 GGGVTLSGGEVLMQ----------AEFATRFLQRLRLWGVSCAIETAGD 77 (213)
T ss_pred CCEEEEECCHHHCC----------HHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 98078607526359----------9999999999986699889976888
No 67
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=61.82 E-value=12 Score=17.47 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-CCEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999997499987811110146657779999999762368-640885345889999999997698189
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG-KNIILVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~-~~vilVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
.+..=.+++.|+.-.-+.+ +.+..|.|-+....+.+..... .++-+|. .-++.||..++++.|...+
T Consensus 192 PVAa~~mmKRG~~v~~vhf-~~~~~~~~kv~~l~~~L~~y~~~~~~~~~~-~~~~~~a~~ia~~~~~~al 259 (310)
T PRK08384 192 AVAIFLMMKRGVEVIPVHI-GMGEKNLEKVRKLWNQLKKYSYGSKGRLVV-VKNFERVNKIIRDFGAKGV 259 (310)
T ss_pred HHHHHHHHHCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECHHHHHHHHHHHHCCCEE
T ss_conf 9999999856987999985-688789999999999999867998469999-6659999999998599899
No 68
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=61.04 E-value=5.2 Score=19.82 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=40.0
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 54568758999625213777765554346820589999999999825200575338970688887788827999999997
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
+..++.++|.|+|||.|.....+ =+.+...+| +|..+. .|+-=.+ ++=+.|+|+-+
T Consensus 296 ~ei~gKTVVC~vSGGNNDi~R~~------------Ei~eRsl~y-~GLKhY----Fiv~FPQ-------RpGALreFln~ 351 (415)
T TIGR02079 296 EEIKGKTVVCVVSGGNNDIERTE------------EIRERSLLY-EGLKHY----FIVRFPQ-------RPGALREFLND 351 (415)
T ss_pred HCCCCCEEEEEEECCCCCCCCCH------------HHHHHHHHH-CCCCEE----EEECCCC-------CCCHHHHHHHH
T ss_conf 00469727999527757533136------------789888873-177036----8752789-------88636887654
Q ss_pred -CCCCHHHHH-CCHHHHHHHHH
Q ss_conf -499987811-11014665777
Q gi|255764508|r 141 -SGVERDDIK-LETQSLDTFQN 160 (242)
Q Consensus 141 -~Gv~~~~I~-~e~~s~nT~en 160 (242)
+| |.++|. +|..=++..|+
T Consensus 352 vLG-P~DDIT~FEY~KK~nRe~ 372 (415)
T TIGR02079 352 VLG-PNDDITKFEYTKKSNRET 372 (415)
T ss_pred HCC-CCCCCCCCEEEECCCCCC
T ss_conf 067-887523310002014787
No 69
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=59.95 E-value=13 Score=17.26 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=56.0
Q ss_pred HHHHHHHHCCCCCCCCEEE-ECCCCCCCCCCCHH--HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999998252005753389-70688887788827--99999999749998781111014665777999999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTII-ISGGDPQKHGLAES--IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii-~SGg~~~~~~~~Ea--~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~ 175 (242)
.+-.|++.|.. +|. ++| .......+.. +..++.+.+.|++...++..+ .+..+.....++++.++...+
T Consensus 107 ~~~~L~~~G~~-----~i~~i~~-~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 178 (266)
T cd06282 107 VAQALAALGHR-----RIAMLAG-RLAASDRARQRYAGYRAAMRAAGLAPLPPVEIP--FNTAALPSALLALLTAHPAPT 178 (266)
T ss_pred HHHHHHHCCCC-----EEEEEEC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEC--CCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999973995-----6999977-788886899999999999998699976179934--872689999999983799984
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 088534588999999999769818
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.++.+++..-..++..++..|+++
T Consensus 179 ai~~~nD~~A~g~l~al~~~g~~v 202 (266)
T cd06282 179 AIFCSNDLLALAVIRALRRLGLRV 202 (266)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 798538889999999999849999
No 70
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=59.83 E-value=13 Score=17.24 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=51.9
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf 99999982520057533897068888778882--7999999997499987811110146657779-99999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~ 175 (242)
.+-.|.++|..+ +.+-+|.... ..+. -+..++.+.+.|++-...+..+. ..+.+.+ ...++++..+...+
T Consensus 108 a~~~Li~~G~~~-----i~~i~~~~~~-~~~~~R~~Gf~~al~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ 180 (269)
T cd06275 108 ATRHLIELGHRR-----IGCITGPLEK-APAQQRLAGFRRAMAEAGLPVNPGWIVEG-DFECEGGYEAMQRLLAQPKRPT 180 (269)
T ss_pred HHHHHHHHCCCE-----EEECCCCCCC-HHHHHHHHHHHHHHHHCCCCCCHHHHCCC-CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999999829971-----7755699777-16999999999999985999765550367-7776889999999997089966
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++.+++.--..++...+..|++
T Consensus 181 aii~~~d~~A~g~~~~l~~~gi~ 203 (269)
T cd06275 181 AVFCGNDLMAMGALCAAQEAGLR 203 (269)
T ss_pred EEECCCHHHHHHHHHHHHHCCCC
T ss_conf 12318749999999999980887
No 71
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=59.70 E-value=13 Score=17.23 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=53.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCE
Q ss_conf 99999982520057533897068888778882-7999999997499987811110146657779-999999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~v 176 (242)
.+-.|+..|.. +|.+-+|........+ -+..++.+.+.|++.+.-++.... .+.+.. ....+++......+.
T Consensus 167 a~~~L~~~Ghr-----~Ia~i~~~~~~~~~~~R~~g~~~al~~~gl~~~~~~i~~~~-~~~~~~~~~~~~ll~~~~~~tA 240 (342)
T PRK10727 167 ATRHLIQQGHT-----RIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGE-PDESGGEQAMTELLGRGRNFTA 240 (342)
T ss_pred HHHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999974997-----59999689888359999999999999769999820588157-8778899999999855999774
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++..|+.--.-++..++..|+++
T Consensus 241 i~~~nD~~A~g~l~al~~~Gl~V 263 (342)
T PRK10727 241 VACYNDSMAAGAMGVLNDNGIDV 263 (342)
T ss_pred CEECCHHHHHHHHHHHHHCCCCC
T ss_conf 15546999999999999829999
No 72
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=59.15 E-value=13 Score=17.17 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 58999999999982520057533897068888778882799999999749998
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVER 145 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~ 145 (242)
..+++..+++-+++-. .-.++++||...+ .| .+..+++.+.|||.
T Consensus 16 D~~~i~~~Ld~~~~~~----pd~vlihGG~~kG---ad-~lA~~WA~~~gv~~ 60 (71)
T pfam10686 16 DHRLIWDALDKVHARH----PDMVLLHGGAPKG---AE-RIAARWARRRGVPQ 60 (71)
T ss_pred HHHHHHHHHHHHHHHC----CCEEEEECCCCCC---HH-HHHHHHHHHCCCCE
T ss_conf 0999999999999868----9879997798633---79-99999999869976
No 73
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=58.70 E-value=13 Score=17.12 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=46.3
Q ss_pred HHHHHHHH-HCCC--CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 99999999-7499--987811110146657779999999762368640885345889999999997698189984266
Q gi|255764508|r 132 IVYNNKLL-ESGV--ERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 132 ~~m~~~l~-~~Gv--~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+..++++. +.|+ .+++|++.+-+.+-.+ ...+.+-+.| ..++|.++-+ +++...|+..|++++|+|+|.
T Consensus 139 ~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~---l~~~~l~~pG--d~v~vE~PtY-~~~~~~~~~~g~~~~~vp~d~ 210 (459)
T COG1167 139 EAIAAYLLARRGISCEPEQIVITSGAQQALD---LLLRLLLDPG--DTVLVEDPTY-PGALQALEALGARVIPVPVDE 210 (459)
T ss_pred HHHHHHHHHHCCCCCCHHHEEECCCHHHHHH---HHHHHHCCCC--CEEEECCCCH-HHHHHHHHHCCCCEEEECCCC
T ss_conf 9999999997499888303898064999999---9999847999--9999899982-899999998699478606788
No 74
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.21 E-value=14 Score=17.07 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=52.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|.+.|.. +|.+-+|........+ -+..++.+.+.|++.+..+..... ++........++++..+..+.++
T Consensus 108 ~~~L~~~G~~-----~I~~i~~~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~p~ai~ 181 (269)
T cd06281 108 VEYLISLGHR-----RIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLST-PAASGFDATRALLALPDRPTAII 181 (269)
T ss_pred HHHHHHCCCC-----CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-CHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999975998-----66898078877679999999999999779999943997799-74899999999980799996565
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
..|+.-...++..+++.|+++
T Consensus 182 ~~~d~~A~g~l~~l~~~g~~V 202 (269)
T cd06281 182 AGGTQVLVGVLRALREAGLRI 202 (269)
T ss_pred ECCHHHHHHHHHHHHHCCCCC
T ss_conf 123388999999999819999
No 75
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=57.81 E-value=14 Score=17.02 Aligned_cols=95 Identities=18% Similarity=0.337 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH-HHHHHHHHHCCCCHHHHHCCHHHHHHHH---------------
Q ss_conf 999999999825200575338970688887788827-9999999974999878111101466577---------------
Q gi|255764508|r 96 RIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES-IVYNNKLLESGVERDDIKLETQSLDTFQ--------------- 159 (242)
Q Consensus 96 Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea-~~m~~~l~~~Gv~~~~I~~e~~s~nT~e--------------- 159 (242)
=+.+-++|.+ ..+.|+|+-- +..+. .|+ ...-+.+.+.|++++.+++|-....|..
T Consensus 115 vf~~QL~LA~-----e~dvPviVHT--Pr~nK-~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~vld~e~~vGlTvqP 186 (254)
T COG1099 115 VFREQLELAR-----ELDVPVIVHT--PRRNK-KEATSKILDILIESGLKPSLVVIDHVNEETVDEVLDEEFYVGLTVQP 186 (254)
T ss_pred HHHHHHHHHH-----HCCCCEEEEC--CCCCC-HHHHHHHHHHHHHCCCCHHHEEHHCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 9999999998-----7499679967--87760-56789999999874998012101206587799997255357788537
Q ss_pred ---HHHHHHHHHHHCCCCCEEEE-------CCHHHHHHHHHHHHHCCCE
Q ss_conf ---79999999762368640885-------3458899999999976981
Q gi|255764508|r 160 ---NAQFSSSMIKNMQGKNIILV-------SSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 160 ---na~~~~~il~~~~~~~vilV-------Tsa~Hm~RA~~~f~~~gi~ 198 (242)
...+..+|+++++.+++++= ++..-.||+....+..|+.
T Consensus 187 gKlt~~eAveIV~ey~~~r~ilnSD~~s~~sd~lavprtal~m~~~gv~ 235 (254)
T COG1099 187 GKLTVEEAVEIVREYGAERIILNSDAGSAASDPLAVPRTALEMEERGVG 235 (254)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 7688899999999818662998366554436620215999999980577
No 76
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.93 E-value=14 Score=16.93 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=54.7
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH-HHHHHCCCCCE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999-99762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS-SMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~-~il~~~~~~~v 176 (242)
.+-.|++.|..+ -.+++|. .......+ -+..++.+.+.|++.+...+.... .+.+...... ++++ ++. +.
T Consensus 113 a~~~L~~~G~~~----i~~i~~~-~~~~~~~~R~~G~~~a~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~l~-~~~-~a 184 (273)
T cd06292 113 AVRHLVALGHRR----IGFASGP-GRTVPRRRKIAGFRAALEEAGLEPPEALVARGM-FSVEGGQAAAVELLG-SGP-TA 184 (273)
T ss_pred HHHHHHHHCCCE----EEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCHHHHHHHHHHHHH-CCC-CE
T ss_conf 999999859980----8995178-777159999999999999849997714897167-777889999999974-799-65
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++.+++....+++..++..|+++
T Consensus 185 i~~~nD~~A~g~~~~l~~~g~~i 207 (273)
T cd06292 185 IVAASDLMALGAIRAARRRGLRV 207 (273)
T ss_pred EEECCCHHHHHHHHHHHHCCCCC
T ss_conf 77458599999999999839989
No 77
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.89 E-value=14 Score=16.93 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=53.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882-79999999974999878111101466577799-999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vi 177 (242)
+-.|.+.|..+ |.+=+|........+ -+..++.+.+.|++.+..+..... .+.+.+. ..++++.+....+.+
T Consensus 108 ~~~L~~~G~~~-----I~~i~~~~~~~~~~~R~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~av 181 (269)
T cd06293 108 TRHLARAGHRR-----IAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGD-YTREFGRAAAAQLLARGDPPTAI 181 (269)
T ss_pred HHHHHHHCCCE-----EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999829983-----8995488776339999999999999769999934899556-31135999999998479998589
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+++.-..-++..++..|+++
T Consensus 182 ~~~nD~~A~g~l~~l~~~gi~v 203 (269)
T cd06293 182 FAASDEIAIGLLEVLRERGLSI 203 (269)
T ss_pred EECCHHHHHHHHHHHHHCCCCC
T ss_conf 9688599999999999849999
No 78
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=56.84 E-value=11 Score=17.76 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=43.6
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
Q ss_conf 8970688887788827999999997499987811---1101466577799999997623686408853458
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAY 183 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~ 183 (242)
++++.|.|.+.|.--|...++.+.++|+-.=.|. +..++....++|...-+-|++. .+.++++.++-
T Consensus 88 vfi~AGmGGGTGTGaaPviA~~Ake~g~LtvavVT~PF~~EG~~R~~~A~~gl~~L~~~-~D~~Ivi~Ndk 157 (304)
T cd02201 88 VFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKH-VDTLIVIPNDK 157 (304)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEHHH
T ss_conf 99994257986631789999988667985999996785775289999999999999985-89459963599
No 79
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=56.62 E-value=15 Score=16.90 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC--CCHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 058999999999982520057533897068888778882799999999749--998781111014665777999999976
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESG--VERDDIKLETQSLDTFQNAQFSSSMIK 169 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~G--v~~~~I~~e~~s~nT~ena~~~~~il~ 169 (242)
.+++|+.+|++= +-+|++=| |..-+|++=+.+|.++|.++| +. -++.+=++-..-|.--...-..+.
T Consensus 43 kAv~ri~~A~~~---------~eki~i~G-DyDvDGiTSt~~l~~~L~~lGp~~~-~~~~IPnR~~egYG~~~~~~~~~~ 111 (705)
T TIGR00644 43 KAVERIIEAIEN---------NEKILIFG-DYDVDGITSTAILVEFLRELGPYVQ-VDYYIPNRFTEGYGLSPEALRELK 111 (705)
T ss_pred HHHHHHHHHHHC---------CCCEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 999999999972---------89389996-1752268999999999995099732-466626635777788989999998
Q ss_pred HCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 23686408853458899999999976981899842664
Q gi|255764508|r 170 NMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYL 207 (242)
Q Consensus 170 ~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~ 207 (242)
+.|.+=+|-|=+.---..+..++++.|++|+ -|||+
T Consensus 112 ~~G~~LiiTVD~Gi~a~~e~~~a~~~G~dVI--VtDHH 147 (705)
T TIGR00644 112 ENGVSLIITVDNGISAHEEIEYAKELGIDVI--VTDHH 147 (705)
T ss_pred HCCCEEEEECCCCHHHHHHHHHHHHCCCEEE--EECCC
T ss_conf 6698399982687426999999986698199--97256
No 80
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=56.59 E-value=15 Score=16.89 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=10.9
Q ss_pred HHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999998252005753389706
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISG 120 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SG 120 (242)
...++.+..+..+...-+..+|
T Consensus 87 f~~~l~~~~k~~gi~taidTnG 108 (246)
T PRK11145 87 FVRDWFRACKKEGIHTCLDTNG 108 (246)
T ss_pred HHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999998879989998999
No 81
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=56.25 E-value=9.3 Score=18.15 Aligned_cols=11 Identities=27% Similarity=0.754 Sum_probs=5.5
Q ss_pred CCEEEECCHHH
Q ss_conf 64088534588
Q gi|255764508|r 174 KNIILVSSAYH 184 (242)
Q Consensus 174 ~~vilVTsa~H 184 (242)
.+|+==|++||
T Consensus 126 ~nvvaFTNaFH 136 (413)
T TIGR02407 126 SNVVAFTNAFH 136 (413)
T ss_pred CCEEEECCCCH
T ss_conf 40688517730
No 82
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=56.06 E-value=15 Score=16.84 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=44.1
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC---HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 111014665777999999976236864088534---58899999999976981899842664
Q gi|255764508|r 149 KLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS---AYHLKRSQLYFQHFGINTKASCSDYL 207 (242)
Q Consensus 149 ~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs---a~Hm~RA~~~f~~~gi~~~p~~~d~~ 207 (242)
.+++.+.|-.+.....+++++.++.+.-+|+-| ..|..++. ..|.+.+..|.|-.
T Consensus 134 R~~d~g~Dg~~~i~~i~~~~~~~~~~tkILaASiR~~~~v~~a~----~~Gad~iTip~~v~ 191 (220)
T PRK12653 134 RIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCL----LAGCESITLPLDVA 191 (220)
T ss_pred EHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH----HCCCCEEECCHHHH
T ss_conf 06433898266899999999976999889998389999999999----86999998399999
No 83
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=55.74 E-value=15 Score=16.81 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHHHCCCC
Q ss_conf 888279999999974999
Q gi|255764508|r 127 GLAESIVYNNKLLESGVE 144 (242)
Q Consensus 127 ~~~Ea~~m~~~l~~~Gv~ 144 (242)
.+.|+-...+.+.+.|++
T Consensus 84 ~t~eai~lak~a~~~Gad 101 (299)
T COG0329 84 STAEAIELAKHAEKLGAD 101 (299)
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 799999999999970999
No 84
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=55.64 E-value=9.7 Score=18.05 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=47.2
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
Q ss_conf 8970688887788827999999997499987811---110146657779999999762368640885345889
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHL 185 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm 185 (242)
++++.|.|.+.|.--+...++.+.++|+..=.|. ++.++....+||...-+-|++. .+.++++-+.--+
T Consensus 88 vfi~AGmGGGTGtGaaPviA~~Ake~g~ltvavVt~PF~~EG~~r~~~A~~gl~~L~~~-~D~~Ivi~Nd~L~ 159 (303)
T cd02191 88 VFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVRE-VDNLMVIPNEKLR 159 (303)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH-CCEEEEECHHHHH
T ss_conf 99998418970042899999999975993899997872551199999999999999986-9979996068998
No 85
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=54.74 E-value=16 Score=16.70 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=52.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCE
Q ss_conf 9999982520057533897068888778882--79999999974999878111101466577799-99999762368640
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNI 176 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~v 176 (242)
+-.|++.|.. +|.+-+|.... ...+ -+..++.+.+.|++.+.-++.. +..+.|... ...++++.....+.
T Consensus 176 ~~~L~~~Ghr-----~I~~i~~~~~~-~~~~~R~~G~~~al~~~gl~~~~~~i~~-~~~~~~~g~~~~~~ll~~~~~ptA 248 (341)
T PRK11041 176 VNYLYELGHK-----RIACIAGPEEM-PLCHYRLQGYVQALRRCGITVDPQYIAR-GDFTFEAGAKAMQQLLELPQPPTA 248 (341)
T ss_pred HHHHHHCCCC-----EEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEE-CCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 9999974997-----69999689877-6899999999999998699999104895-467679999999999955999857
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++..|+..-..++..++..|+.+
T Consensus 249 i~~~nD~~A~g~l~al~~~Gl~V 271 (341)
T PRK11041 249 VFCHSDVMALGALSQAKRQGLKV 271 (341)
T ss_pred EEECCHHHHHHHHHHHHHHCCCC
T ss_conf 98767799999999999718989
No 86
>pfam08869 XisI XisI protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.
Probab=54.67 E-value=7.7 Score=18.70 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=18.9
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 99999997499987811110146
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
..++.|++.|||+++|++--.+-
T Consensus 77 gIa~eLv~~GVPk~dIVLgFh~P 99 (110)
T pfam08869 77 GIANELVEAGVPKEDIVLGFHPP 99 (110)
T ss_pred CHHHHHHHCCCCHHHEEEECCCC
T ss_conf 08999998599889989922682
No 87
>pfam02602 HEM4 Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyses the reaction: Hydroxymethylbilane <= uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.
Probab=54.41 E-value=16 Score=16.67 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=9.0
Q ss_pred CEEEECCHHHHHHHHHHHH
Q ss_conf 4088534588999999999
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~ 193 (242)
.++++||+.-..+-..++.
T Consensus 168 d~i~ftS~~~v~~f~~~~~ 186 (229)
T pfam02602 168 DAVVFTSPSTVRSFLELLP 186 (229)
T ss_pred CEEEECCHHHHHHHHHHHH
T ss_conf 8999879999999999877
No 88
>KOG0622 consensus
Probab=54.33 E-value=11 Score=17.79 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=47.0
Q ss_pred HHHHHCCCCHHHHHCCH---------------HHHHHHHHHHHHHHHHHHCCCCCEEE--ECCHH---------------
Q ss_conf 99997499987811110---------------14665777999999976236864088--53458---------------
Q gi|255764508|r 136 NKLLESGVERDDIKLET---------------QSLDTFQNAQFSSSMIKNMQGKNIIL--VSSAY--------------- 183 (242)
Q Consensus 136 ~~l~~~Gv~~~~I~~e~---------------~s~nT~ena~~~~~il~~~~~~~vil--VTsa~--------------- 183 (242)
+....+||++++|+.-+ -+.+|++|..+..++.+.++-.+++| =|++-
T Consensus 114 ~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~~~ 193 (448)
T KOG0622 114 DLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDSTATCRLNLKFGCSLD 193 (448)
T ss_pred HHHHHCCCCHHHEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHH
T ss_conf 99986698856668627875199999999759707862589999999974997338999736887455556675687778
Q ss_pred HHHHHHHHHHHCCCEEEEEEC
Q ss_conf 899999999976981899842
Q gi|255764508|r 184 HLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 184 Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
-.+--+-.++..|++++++.-
T Consensus 194 ~~~~lLd~ak~l~lnvvGvsf 214 (448)
T KOG0622 194 NCRHLLDMAKELELNVVGVSF 214 (448)
T ss_pred HHHHHHHHHHHCCCEEEEEEE
T ss_conf 999999999871865888998
No 89
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=54.25 E-value=16 Score=16.65 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH-HHHHHHHCCCCC
Q ss_conf 99999982520057533897068888778882--799999999749998781111014665777999-999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQF-SSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~-~~~il~~~~~~~ 175 (242)
.+-.|+.+|.. +|.+=+|........+ -+..++.+.+.|++.+..+..... .+.+.... .++++++ +..+
T Consensus 107 a~~~L~~~G~~-----~I~~i~~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~~~-~~~~~~~~~~~~l~~~-~~~~ 179 (268)
T cd06298 107 ATELLIKNGHK-----KIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGD-YTYESGYELAEELLED-GKPT 179 (268)
T ss_pred HHHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCC-HHHHHHHHHHHHHHHC-CCCC
T ss_conf 99999972996-----699996787776259999999999999849997601200354-0377899999999836-9997
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 088534588999999999769818
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.++.+++.....++..++..|+++
T Consensus 180 ai~~~nD~~A~g~l~~l~~~g~~v 203 (268)
T cd06298 180 AAFVTDDELAIGILNAAQDAGLKV 203 (268)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 899668799999999999749999
No 90
>pfam07788 DUF1626 Protein of unknown function (DUF1626). This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaebacteria. One member is thought to be similar to tropomyosin.
Probab=54.02 E-value=16 Score=16.63 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=13.9
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 86408853458899999999976981
Q gi|255764508|r 173 GKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 173 ~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++.++||..-| +||+..+++.|++
T Consensus 46 ~~rlivItP~id-~ra~~~A~~LGIe 70 (70)
T pfam07788 46 VDRLIVVTPFID-DRARAMAKDLGIE 70 (70)
T ss_pred CCEEEEECCCCC-HHHHHHHHHHCCC
T ss_conf 762899846659-7899999982989
No 91
>PRK03767 TrpR binding protein WrbA; Provisional
Probab=54.00 E-value=16 Score=16.62 Aligned_cols=75 Identities=23% Similarity=0.159 Sum_probs=41.0
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH--HHHH
Q ss_conf 46454568758999625213777765554346820589999999999825200575338970688887788827--9999
Q gi|255764508|r 58 LSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES--IVYN 135 (242)
Q Consensus 58 ~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea--~~m~ 135 (242)
..+++...+|+||. |. |...+.+......=++..-.+|.+++-.+...-.+.|.|...+. -|. ..|.
T Consensus 62 a~~~dL~~aDgiif-Gs--------PT~~G~~aaq~K~F~D~t~~~W~~g~l~gK~a~~FTssgs~~Gg--qe~TL~~~~ 130 (200)
T PRK03767 62 ATPQELADYDAIIF-GT--------PTRFGNMAGQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGG--QESTITSTW 130 (200)
T ss_pred CCHHHHHHCCEEEE-CC--------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--HHHHHHHHH
T ss_conf 78999973772263-27--------75567754999999997568886191147457999627999887--899999999
Q ss_pred HHHHHCCC
Q ss_conf 99997499
Q gi|255764508|r 136 NKLLESGV 143 (242)
Q Consensus 136 ~~l~~~Gv 143 (242)
.++.+.|.
T Consensus 131 ~~~~hhGM 138 (200)
T PRK03767 131 TTLLHHGM 138 (200)
T ss_pred HHHHHCCE
T ss_conf 99997787
No 92
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=52.57 E-value=10 Score=17.96 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=70.8
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC-CCCCH-H-------HHHHHH--
Q ss_conf 999625213777765554346820589999999999825200575338970688887-78882-7-------999999--
Q gi|255764508|r 69 IVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQK-HGLAE-S-------IVYNNK-- 137 (242)
Q Consensus 69 IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~-~~~~E-a-------~~m~~~-- 137 (242)
+=+|=||...-.+.|....-+. .+|+.+.++- ++..+++++.===+..+ +-++| + .-|++|
T Consensus 53 a~~LRGGAfKPRTSPYsFQGlg-------~~gl~~l~~A-~~~~GL~~vTEvmd~~d~e~~~~y~D~lQiGARNmQNF~L 124 (262)
T TIGR01361 53 AKILRGGAFKPRTSPYSFQGLG-------EEGLKLLRRA-ADETGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFEL 124 (262)
T ss_pred CCEEECCCCCCCCCCCCCCCCH-------HHHHHHHHHH-HHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 4043066348888884124741-------8999999999-9860994898863625677787651134222541225699
Q ss_pred HHHCCCCHHHHHCCHHHH-HHHHHHHHHHHHHHHCC-CCCEEEECCHHHHHHHHHHHHHC---CCE-----------EEE
Q ss_conf 997499987811110146-65777999999976236-86408853458899999999976---981-----------899
Q gi|255764508|r 138 LLESGVERDDIKLETQSL-DTFQNAQFSSSMIKNMQ-GKNIILVSSAYHLKRSQLYFQHF---GIN-----------TKA 201 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s~-nT~ena~~~~~il~~~~-~~~vilVTsa~Hm~RA~~~f~~~---gi~-----------~~p 201 (242)
|.+.|= .++=++-.++. ||.||-.++++.+-+.| ..+|||+ -|=.++|++. .+| .-|
T Consensus 125 L~~vG~-~~KPVLLKRG~~aTi~EwL~AAEYIl~~GsN~~ViLC------ERGIRTfE~~TR~TLD~saV~~~K~~tHLP 197 (262)
T TIGR01361 125 LKEVGK-QGKPVLLKRGMGATIEEWLEAAEYILSEGSNGNVILC------ERGIRTFEKSTRNTLDLSAVPLLKKETHLP 197 (262)
T ss_pred HHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEE------ECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999722-3797553077215899999999999846889954899------758567630024533378999998605898
Q ss_pred EECC--CCCCCCCCCCC
Q ss_conf 8426--64431113754
Q gi|255764508|r 202 SCSD--YLNAYYSIIPL 216 (242)
Q Consensus 202 ~~~d--~~~~~~~~~p~ 216 (242)
+-+| |-++.+++.++
T Consensus 198 i~VDPSH~~GrRdLV~p 214 (262)
T TIGR01361 198 IIVDPSHAAGRRDLVLP 214 (262)
T ss_pred EEECCCCCCCHHHHHHH
T ss_conf 78718798762457889
No 93
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=52.23 E-value=5.9 Score=19.46 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHH---CCCCHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 8827999999997---4999878-11110146657779999999762368640885345889999999997698189
Q gi|255764508|r 128 LAESIVYNNKLLE---SGVERDD-IKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 128 ~~Ea~~m~~~l~~---~Gv~~~~-I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
+...+........ .+ .-+. ++.--.|.||..|..+ +++ |+--=.+|-+-++...+++.+
T Consensus 65 i~k~~~~~~l~~~~~~~~-~~~avfH~GAcS~TTe~D~~~---~m~----------nN~~ys~~Ll~~c~~~~~~~I 127 (353)
T TIGR02197 65 IDKDDLLDRLEKGSEALG-KIEAVFHQGACSDTTETDGEY---MME----------NNYQYSKRLLDWCAEKGVPFI 127 (353)
T ss_pred CCCHHHHHHHHHCCCCCC-CCCEEEECCHHHHHHHHHHHH---HHH----------HHHHHHHHHHHHHHHCCCCEE
T ss_conf 588546999983020138-833799733125358862799---998----------899999999999996489868
No 94
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=52.09 E-value=16 Score=16.65 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=13.0
Q ss_pred CCCEEEECCCCCCCCCCCHH
Q ss_conf 75338970688887788827
Q gi|255764508|r 112 MHCTIIISGGDPQKHGLAES 131 (242)
Q Consensus 112 ~~~~ii~SGg~~~~~~~~Ea 131 (242)
...|+|-|||-|..+...||
T Consensus 256 v~iPVIASGGAG~~eHf~EA 275 (312)
T TIGR00735 256 VKIPVIASGGAGKPEHFYEA 275 (312)
T ss_pred CCCCEEEECCCCCCCCHHHH
T ss_conf 66565750787985300322
No 95
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=52.07 E-value=5.8 Score=19.52 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=38.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 99999621245444645456875899962521377776555434682058999999999982520057533897068888
Q gi|255764508|r 45 LLKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQ 124 (242)
Q Consensus 45 l~~~le~~~~~~~~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~ 124 (242)
+...+..+...|....+ ...++||+|+| +..|+++-.+- -.+.+++++|....
T Consensus 158 ie~~lr~~~~IPvFhDD--qqGTaiv~lA~----------------------llnalk~~gk~---l~d~kiv~~GAGAA 210 (432)
T COG0281 158 IEERLRYRMNIPVFHDD--QQGTAIVTLAA----------------------LLNALKLTGKK---LKDQKIVINGAGAA 210 (432)
T ss_pred HHHHHHHCCCCCCCCCC--CCHHHHHHHHH----------------------HHHHHHHHCCC---CCCEEEEEECCCHH
T ss_conf 99998634789834545--32799999999----------------------99999984997---22038999677588
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHCCHH
Q ss_conf 77888279999999974999878111101
Q gi|255764508|r 125 KHGLAESIVYNNKLLESGVERDDIKLETQ 153 (242)
Q Consensus 125 ~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~ 153 (242)
+-...+.+...|+.+++|++-++
T Consensus 211 ------giaia~~l~~~g~~~~~i~~~D~ 233 (432)
T COG0281 211 ------GIAIADLLVAAGVKEENIFVVDR 233 (432)
T ss_pred ------HHHHHHHHHHHCCCCCCEEEECC
T ss_conf ------99999999982898445899816
No 96
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=51.71 E-value=17 Score=16.39 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCEE--EECCCCCCCCCCCHH--------HHHHHHHHHCCCCHHHHHCCHH--------HHH
Q ss_conf 9999999999825200575338--970688887788827--------9999999974999878111101--------466
Q gi|255764508|r 95 SRIFETMRLYKSCKQHSMHCTI--IISGGDPQKHGLAES--------IVYNNKLLESGVERDDIKLETQ--------SLD 156 (242)
Q Consensus 95 ~Rl~~a~~L~~~~~~~~~~~~i--i~SGg~~~~~~~~Ea--------~~m~~~l~~~Gv~~~~I~~e~~--------s~n 156 (242)
+.+..++++.+.- +++. +++|..+.+....++ ....+++.+.|| ++.+|+- -.|
T Consensus 84 ~~~~~ai~~a~~l-----g~~~i~~~~G~~~~~~~~e~~~~~~~e~l~~~a~~a~~~Gv---~l~iEpln~~e~~g~~i~ 155 (254)
T TIGR03234 84 EGVALAIAYARAL-----GCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL---TLLIEPINSFDMPGFFLT 155 (254)
T ss_pred HHHHHHHHHHHHH-----CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEEEECCHHCCCCCHHC
T ss_conf 7389999999996-----89868867568888999899999999999999999996598---898863562116986107
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCHHHHHHH----HHHHHHCC
Q ss_conf 57779999999762368640885345889999----99999769
Q gi|255764508|r 157 TFQNAQFSSSMIKNMQGKNIILVSSAYHLKRS----QLYFQHFG 196 (242)
Q Consensus 157 T~ena~~~~~il~~~~~~~vilVTsa~Hm~RA----~~~f~~~g 196 (242)
|.+.+. ++++.-+.+++-+.=+.|||.+. ...+++.+
T Consensus 156 t~~~a~---~lv~~v~~p~v~l~~D~~H~~~~~~d~~~~i~~~~ 196 (254)
T TIGR03234 156 TTEQAL---AVIDDVGRENLKLQYDLYHMQRMGGDLARTLAAYA 196 (254)
T ss_pred CHHHHH---HHHHHHCCCCEEEEEECHHHHHCCCCHHHHHHHCC
T ss_conf 999999---99998087765688870565744889999999703
No 97
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=51.54 E-value=18 Score=16.37 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 82799999999749998781111014665777999999976236864088534
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS 181 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs 181 (242)
+|...-.+|+..+||+.+++++-.- +|.|++....+.+-+.+...+++|-|
T Consensus 88 ~E~a~d~~~a~~lGVD~~~l~~~qp--d~~Eqal~i~~~li~~~~~~liViDS 138 (322)
T pfam00154 88 AEHALDPVYAKKLGVDIDNLLVSQP--DTGEQALEIADMLVRSGAVDLIVVDS 138 (322)
T ss_pred HHHHCCHHHHHHCCCCHHHEEEECC--CHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 3660598899980988025389778--83999999999985379976599825
No 98
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=50.95 E-value=18 Score=16.32 Aligned_cols=94 Identities=9% Similarity=0.020 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|.+.|.. +|.+-||........+ -+..++.+.+.|++.+.........+..+.....++++++ ++ +.+
T Consensus 107 a~~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-~p-~ai 179 (265)
T cd06299 107 AVSLLVALGHK-----KIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQ-GA-TAI 179 (265)
T ss_pred HHHHHHHCCCC-----EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-CC-CEE
T ss_conf 99999974998-----388604898875699999999999997699999305998403557899999999963-99-854
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+++..-.-++..++..|+.+
T Consensus 180 ~~~nD~~A~g~~~~l~~~g~~v 201 (265)
T cd06299 180 IAGDSMMTIGAIRAIHDAGLVI 201 (265)
T ss_pred ECCCCHHHHHHHHHHHHHCCCC
T ss_conf 5068588999999999838999
No 99
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=50.48 E-value=18 Score=16.27 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 82799999999749998781111014665777999999976236864088534
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS 181 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs 181 (242)
+|...-.+++..+||+.++++.-.- +|.|++....+-+-+.+...+++|-|
T Consensus 91 aE~a~d~~~a~~lGVD~~~l~~~qp--~~~Eq~l~i~~~li~s~~~dliViDS 141 (325)
T cd00983 91 AEHALDPVYAKKLGVDLDNLLISQP--DTGEQALEIADSLVRSGAVDLIVVDS 141 (325)
T ss_pred HHHCCCHHHHHHCCCCHHHEEEECC--CHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 2542598999980998467589666--38999999999975158876799815
No 100
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=49.67 E-value=19 Score=16.19 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC-------CCH--HHHHHHHHHHCC-CCHHHHHC
Q ss_conf 76555434682058999999999982520057533897068888778-------882--799999999749-99878111
Q gi|255764508|r 81 TIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHG-------LAE--SIVYNNKLLESG-VERDDIKL 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~-------~~E--a~~m~~~l~~~G-v~~~~I~~ 150 (242)
-.+.....+..++...+.+-+...++.+. .++.+.| .....| .+| |++.++++.+.| ||+++|..
T Consensus 55 ~Fd~d~~~L~~~s~~~L~~~A~~L~~~p~----~~v~I~G-HTD~~G~~~yN~~LS~rRA~aV~~~l~~~g~i~~~ri~~ 129 (160)
T PRK09967 55 LFAKNDYKLLPESQQQIQTMAAKLASTGL----THARMDG-HTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTT 129 (160)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCC----CEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 92699501199899999999999997899----6299987-479989989999999999999999998537854435899
Q ss_pred CHH
Q ss_conf 101
Q gi|255764508|r 151 ETQ 153 (242)
Q Consensus 151 e~~ 153 (242)
...
T Consensus 130 ~g~ 132 (160)
T PRK09967 130 QGL 132 (160)
T ss_pred EEC
T ss_conf 964
No 101
>PRK12861 malic enzyme; Reviewed
Probab=49.43 E-value=9 Score=18.25 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCHHHHHHHH-----HHHHHHHHHHHC-------CCCCEEEEC-CHHHHHHHHHHHHHCC
Q ss_conf 279999999974999878111101466577-----799999997623-------686408853-4588999999999769
Q gi|255764508|r 130 ESIVYNNKLLESGVERDDIKLETQSLDTFQ-----NAQFSSSMIKNM-------QGKNIILVS-SAYHLKRSQLYFQHFG 196 (242)
Q Consensus 130 Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~e-----na~~~~~il~~~-------~~~~vilVT-sa~Hm~RA~~~f~~~g 196 (242)
.+.+.++-+++-||....|.=-+.=+...+ .....+.+...- +.+||++-- ..--+.||-..+..+|
T Consensus 391 v~~ava~aa~~sgva~~~i~d~~~Y~~~L~~rl~~s~~~mr~i~~~ak~~~r~~~pKRIVFaEGEdeRVLRAAq~~~dEG 470 (762)
T PRK12861 391 IAPAVAKAAMEGGVATRPLADLDAYVEQLQQFVYHSGAFMKPLFATARQLVRDGGKARIVFTEGEDERVLRAVQVIVDEK 470 (762)
T ss_pred HCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 05999999986287668824699999999977672388999999999754235687469924887768999999999749
Q ss_pred CE
Q ss_conf 81
Q gi|255764508|r 197 IN 198 (242)
Q Consensus 197 i~ 198 (242)
+-
T Consensus 471 ia 472 (762)
T PRK12861 471 LA 472 (762)
T ss_pred CC
T ss_conf 84
No 102
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=47.60 E-value=19 Score=16.16 Aligned_cols=13 Identities=15% Similarity=0.026 Sum_probs=7.3
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999825200
Q gi|255764508|r 98 FETMRLYKSCKQH 110 (242)
Q Consensus 98 ~~a~~L~~~~~~~ 110 (242)
.+|+-|-+-|...
T Consensus 15 LaA~iL~klgyev 27 (198)
T COG2117 15 LAALILDKLGYEV 27 (198)
T ss_pred HHHHHHHHHCCCC
T ss_conf 8999998717871
No 103
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=47.49 E-value=20 Score=15.97 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=10.3
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999769818998426
Q gi|255764508|r 185 LKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 185 m~RA~~~f~~~gi~~~p~~~d 205 (242)
.++++-.|...+|+|+|.-+|
T Consensus 146 ~~l~k~~F~~l~iEv~Pl~~e 166 (378)
T TIGR02351 146 IKLAKEYFSSLAIEVQPLTEE 166 (378)
T ss_pred HHHHHHHCCCCEEEEEECCHH
T ss_conf 999875278544887307704
No 104
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=47.48 E-value=20 Score=15.97 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=73.7
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE-EECCCCCCC-CCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 99625213777765554346820589999999999825200575338-970688887-7888279999999974999878
Q gi|255764508|r 70 VLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTI-IISGGDPQK-HGLAESIVYNNKLLESGVERDD 147 (242)
Q Consensus 70 VVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~i-i~SGg~~~~-~~~~Ea~~m~~~l~~~Gv~~~~ 147 (242)
|||.|-...+...|+... |+..++-+.-...-+++. -+| ++||..... ++..--.-.++-|.+.||+=+.
T Consensus 142 VVLAGt~D~~~~~pSVNI-------Dy~~A~kEav~~l~~~Gh-K~iAfv~G~L~~~~N~~~~l~GykE~L~~~gI~~~e 213 (332)
T TIGR01481 142 VVLAGTVDKENELPSVNI-------DYKQATKEAVKELIAKGH-KKIAFVSGSLSDSVNGEVRLEGYKEALKKAGIAYEE 213 (332)
T ss_pred EEEECCCCCCCCCCCCCC-------CHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCEECCCHHHHHHHHCCCCCCC
T ss_conf 899535486546773101-------678999999999863358-268887367571104520133046788736874142
Q ss_pred -HHCCHHHHHHHHHHHHHHHHHHHCCC-CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf -11110146657779999999762368-640885345889999999997698189984266
Q gi|255764508|r 148 -IKLETQSLDTFQNAQFSSSMIKNMQG-KNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 148 -I~~e~~s~nT~ena~~~~~il~~~~~-~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
.+.| |.=.|..-.-..+-|...+. .+.++|+|+=---=.+--+-..|++ +|-|+
T Consensus 214 ~L~~~--~~YsY~~G~K~~~~l~~s~p~~tAv~v~~DE~A~G~lnaa~D~Gi~---VPeDL 269 (332)
T TIGR01481 214 DLVIE--AKYSYDAGVKLAAELLESSPKITAVVVADDELAIGILNAALDAGIK---VPEDL 269 (332)
T ss_pred CEEEE--CCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCC---CCCCC
T ss_conf 21330--4555044699999998538996589981828899999999857898---87645
No 105
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.47 E-value=20 Score=15.97 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|.+.|.. +|.+-||........| -+..++.+.+.|++.+.-+......+..+.+....+.++ +..+.+
T Consensus 109 a~~~L~~~Ghr-----~I~~i~~~~~~~~~~~R~~Gf~~al~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ptAi 181 (268)
T cd06277 109 ATEYLIEKGHR-----KIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEKEEDEEDIGKFIDELK--PLPTAF 181 (268)
T ss_pred HHHHHHHCCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCC--CCCCEE
T ss_conf 99999970998-----36997278888129999999999999859999822466258777999999998478--899879
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+++....-++..++..|+++
T Consensus 182 ~~~nD~~A~g~~~~l~~~g~~v 203 (268)
T cd06277 182 FCSNDGVAFLLIKVLKEMGIRV 203 (268)
T ss_pred EECCHHHHHHHHHHHHHCCCCC
T ss_conf 9688599999999999859999
No 106
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=46.99 E-value=21 Score=15.92 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=52.3
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC-------CCH--HHHHHHH
Q ss_conf 5899962521377776555434682058999999999982520057533897068888778-------882--7999999
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHG-------LAE--SIVYNNK 137 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~-------~~E--a~~m~~~ 137 (242)
..++.+-+.+..+.+ .......+...+..-++..+++|. ..|-+.| .....| .|| |+..++|
T Consensus 105 ~l~l~mp~~I~F~~d----sa~l~p~~~~~L~~vA~~L~~yp~----~~V~I~G-HTD~~G~~~yN~~LS~~RA~aV~~y 175 (219)
T PRK10510 105 NIILNMPNNVTFDSS----SATLKPAGANTLTGVAMVLKEYPK----TAVNVVG-YTDSTGSHDLNMRLSQQRADSVASA 175 (219)
T ss_pred EEEEECCCCCEEECC----CHHCCHHHHHHHHHHHHHHHHCCC----CEEEEEE-EECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 789967888566188----521296789999999999998899----2799998-7689671999999999999999999
Q ss_pred HHHCCCCHHHHHCCHHH
Q ss_conf 99749998781111014
Q gi|255764508|r 138 LLESGVERDDIKLETQS 154 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s 154 (242)
|.+.||++++|.....+
T Consensus 176 L~~~GV~~~Ri~~~G~G 192 (219)
T PRK10510 176 LITQGVDASRIRTQGLG 192 (219)
T ss_pred HHHCCCCHHHEEEEEEC
T ss_conf 99859995648999876
No 107
>CHL00181 cbbX CbbX; Provisional
Probab=46.12 E-value=21 Score=15.83 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=10.6
Q ss_pred HHHHH-HHHHHHHCCCCCEEEECCHH
Q ss_conf 77999-99997623686408853458
Q gi|255764508|r 159 QNAQF-SSSMIKNMQGKNIILVSSAY 183 (242)
Q Consensus 159 ena~~-~~~il~~~~~~~vilVTsa~ 183 (242)
.+|.. ..+.++.+.. ++++|=..|
T Consensus 145 ~eaidtLl~~me~~~~-~lvvI~AGY 169 (287)
T CHL00181 145 AEAIEILLQVMENQRD-DLVVIFAGY 169 (287)
T ss_pred HHHHHHHHHHHHHCCC-CEEEEEECC
T ss_conf 9999999999870799-889998467
No 108
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=45.95 E-value=21 Score=15.82 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=53.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH------HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCC
Q ss_conf 9999982520057533897068888778882------7999999997499987811110146657779-99999976236
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE------SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQ 172 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E------a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~ 172 (242)
+-.|++.|.. +|.+-||........+ -+..++.+.+.|+..+..+.+. . .|.++. ....+++++..
T Consensus 104 ~~~Li~~Ghr-----~I~~i~g~~~~~~~~~~~~~~R~~Gy~~al~~~g~~~~~~~~~~-~-~~~~~g~~~~~~~l~~~~ 176 (270)
T cd01544 104 LDYLLELGHT-----RIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGLYDPELIYIG-D-FTVESGYQLMKEALKSLG 176 (270)
T ss_pred HHHHHHCCCC-----EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-C-CCHHHHHHHHHHHHHCCC
T ss_conf 9999977998-----69999577667751225689999999999998599996449966-8-997999999999997288
Q ss_pred C--CCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8--64088534588999999999769818
Q gi|255764508|r 173 G--KNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 173 ~--~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
. .+.++.+++.--.-++..++..|+++
T Consensus 177 ~~~ptAi~~~nD~~A~g~l~~l~~~gl~V 205 (270)
T cd01544 177 DNLPTAFFIASDPMAIGALRALQEAGIKV 205 (270)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 78997899823188999999999879988
No 109
>KOG4038 consensus
Probab=45.13 E-value=8.6 Score=18.38 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999974999878111101466577799999997
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMI 168 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il 168 (242)
.+|.++..++|. ..++|+|||||..+.++--
T Consensus 85 ~i~eewffefgf------vipnstntwqs~ieaapes 115 (150)
T KOG4038 85 RIMEEWFFEFGF------VIPNSTNTWQSTIEAAPES 115 (150)
T ss_pred EEHHHHHHHHCE------ECCCCCCHHHHHHHHCCHH
T ss_conf 567876444123------4368760689998619143
No 110
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=44.84 E-value=22 Score=15.71 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE----------EECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 79999999974999878111101466577799999997623686408----------85345889999999997698189
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII----------LVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi----------lVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
.+..-+.+...|+. ++--+.+-.|.|+|+.++++.++-...+++ |--+.+-..+|--..-+.|+.|-
T Consensus 58 ~~~~l~~l~~~~~~---~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl 134 (262)
T COG2022 58 GDGILDLLIPLGVT---LLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL 134 (262)
T ss_pred CCHHHHHHHHCCCE---ECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 53088774113867---678764558899999999999997069848999936876548875789999999986798885
Q ss_pred EEECCC
Q ss_conf 984266
Q gi|255764508|r 201 ASCSDY 206 (242)
Q Consensus 201 p~~~d~ 206 (242)
||-+|.
T Consensus 135 PY~~dD 140 (262)
T COG2022 135 PYTTDD 140 (262)
T ss_pred ECCCCC
T ss_conf 036887
No 111
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=44.83 E-value=22 Score=15.71 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCHHHHHHH-HHHHHHHHHHHHCCCCCEE--EECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 27999999997499987811110146657-7799999997623686408--85345889999999997698189
Q gi|255764508|r 130 ESIVYNNKLLESGVERDDIKLETQSLDTF-QNAQFSSSMIKNMQGKNII--LVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 130 Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~-ena~~~~~il~~~~~~~vi--lVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
-.+.++.++..+|+|--.+.... +.+.+ |.....-+-+++++.+.++ =|-|.+|..|-...+++.|+++.
T Consensus 46 ~~~l~~~qAealgiPl~~~~~~~-~~~~~~~~l~~~L~~~k~~gi~~vv~GdI~s~~qr~~~e~~c~~lgl~~~ 118 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISG-EEEDEVEDLKELLRKLKEEGVDAVVFGAILSEYQRTRVERVCERLGLEPL 118 (194)
T ss_pred CHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 78999999998599669996689-87179999999999999759959999963328899999999997398887
No 112
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=44.76 E-value=22 Score=15.70 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf 99999982520057533897068888778882--7999999997499987811110146657779-99999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~ 175 (242)
.+-.|.+.|.. +|.+-||.... ..+. -+..++.+.+.|++.+- ...... +.|.+ ...++++++....+
T Consensus 170 a~~~L~~~Ghr-----rI~~i~~~~~~-~~~~~R~~Gf~~al~~~g~~~~~--~~~~~~-~~~~g~~~~~~ll~~~~~p~ 240 (330)
T PRK11303 170 LAESLLKFPAE-----SILLLGALPEL-SVSFLREQGFRQALKDDPREVHF--LYAESF-SREAGAQLFEKWLETHGMPD 240 (330)
T ss_pred HHHHHHHCCCC-----EEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCEEE--EECCCC-CHHHHHHHHHHHHHCCCCCC
T ss_conf 99999986999-----79999689756-37999999999999967998059--964889-98999999999983799997
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 088534588999999999769818
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.++..|+.-..-++..++..|+++
T Consensus 241 Ai~~~nD~~A~g~l~al~~~g~~V 264 (330)
T PRK11303 241 ALFTTSYTLLQGVLDVLLERPGKL 264 (330)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 799748999999999999859999
No 113
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=44.74 E-value=22 Score=15.70 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=52.9
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCH-HHHHCCHHHHHHHHHHHH-HHHHHHHCCC-C
Q ss_conf 9999982520057533897068888778882--799999999749998-781111014665777999-9999762368-6
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVER-DDIKLETQSLDTFQNAQF-SSSMIKNMQG-K 174 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~-~~I~~e~~s~nT~ena~~-~~~il~~~~~-~ 174 (242)
+-.|.++|.. +|.+-||.. ....++ -+..++.+.+.|++. +..+.+... |.+.... ..+++..... .
T Consensus 167 ~~~L~~~G~~-----~i~~i~~~~-~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~--~~~~g~~~~~~ll~~~~~~p 238 (333)
T COG1609 167 TEHLIELGHR-----RIAFIGGPL-DSSASRERLEGYRAALREAGLPINPEWIVEGDF--SEESGYEAAERLLARGEPRP 238 (333)
T ss_pred HHHHHHCCCC-----EEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC--CHHHHHHHHHHHHHCCCCCC
T ss_conf 9999987998-----599996798-772189999999999997599977423661678--87899999999985489999
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 408853458899999999976981
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.++.+|+.-..-++..++..|+.
T Consensus 239 tAif~~nD~~Alg~l~~~~~~g~~ 262 (333)
T COG1609 239 TAIFCANDLMALGALRALRELGLR 262 (333)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 789987809999999999980899
No 114
>KOG2388 consensus
Probab=44.70 E-value=22 Score=15.70 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999982520057533897068888778882799999999749998781111014665777999999976236864
Q gi|255764508|r 96 RIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175 (242)
Q Consensus 96 Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~ 175 (242)
+-..+.++..++. .+.++.+||++.--+.+ +.+-+...|++..+=+++..+..+..-..-+.+...+.+.=.
T Consensus 85 ~~~~G~~~i~~~~----~a~~llaGgqgtRLg~~----~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~ 156 (477)
T KOG2388 85 WWKEGLRLIAEGK----VAVVLLAGGQGTRLGSS----GPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIP 156 (477)
T ss_pred HHHCCHHHHHCCC----EEEEEECCCCEEEECCC----CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 8761746663586----03899516740311357----875336647756540655349999999997665404688648
Q ss_pred EEEECCHHHHHHHHHHHHH---CCCEE
Q ss_conf 0885345889999999997---69818
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQH---FGINT 199 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~---~gi~~ 199 (242)
+++-||++-+-+..-.|+. .|++.
T Consensus 157 w~ImtS~~T~e~T~~~f~~~~~FGl~~ 183 (477)
T KOG2388 157 WYIMTSAFTHEATLEYFESHKYFGLKP 183 (477)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCH
T ss_conf 999536886177776775358877774
No 115
>PRK13685 hypothetical protein; Provisional
Probab=44.15 E-value=23 Score=15.64 Aligned_cols=123 Identities=12% Similarity=0.172 Sum_probs=59.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCCCE-EEECCCCCCC--CCCCHHHHHHH
Q ss_conf 568758999625213777765554346820589999999999825200---57533-8970688887--78882799999
Q gi|255764508|r 63 KKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQH---SMHCT-IIISGGDPQK--HGLAESIVYNN 136 (242)
Q Consensus 63 ~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~---~~~~~-ii~SGg~~~~--~~~~Ea~~m~~ 136 (242)
....+.++++- ....+...+..| +|+..+-+..+....+ +...- ++++| .... .-+..-+..++
T Consensus 86 ~~~~~i~l~lD----~S~SM~a~D~~p-----~Rl~~ak~~~~~fi~~~~~~driGlv~Fa~-~a~~~~plT~D~~~~~~ 155 (326)
T PRK13685 86 RNRAVVMLVID----VSQSMRATDVEP-----NRLAAAQEAAKQFADQLTPGINLGLIAFAG-TATVLVSPTTNREATKN 155 (326)
T ss_pred CCCCCEEEEEE----CCCCCCCCCCCC-----CHHHHHHHHHHHHHHHCCCCCEEEEEEECC-CCEECCCCCCCHHHHHH
T ss_conf 57886799998----975655878895-----689999999999997379888289999658-72014898753999999
Q ss_pred HHHHCCCCHHHHHCCHHHHHHHHHHHHHH-HHHH----------HCCCCCEEEECCHHHH-------H----HHHHHHHH
Q ss_conf 99974999878111101466577799999-9976----------2368640885345889-------9----99999997
Q gi|255764508|r 137 KLLESGVERDDIKLETQSLDTFQNAQFSS-SMIK----------NMQGKNIILVSSAYHL-------K----RSQLYFQH 194 (242)
Q Consensus 137 ~l~~~Gv~~~~I~~e~~s~nT~ena~~~~-~il~----------~~~~~~vilVTsa~Hm-------~----RA~~~f~~ 194 (242)
.+.+..+. + .+-.+++..++ +-++ +...+.++|+|+.-+. | -|-.++++
T Consensus 156 ~l~~l~~~-------~--~taiG~ai~~Al~~l~~~~~~~~~~~~~~~~~IILLTDG~~n~g~~~~~p~~~~~AA~~A~~ 226 (326)
T PRK13685 156 ALDKLQLA-------D--RTATGEGIFTALQAIATVGAVIGGGDTPPPARIVLFSDGKETVPTNPDNPKGAYTAARTAKD 226 (326)
T ss_pred HHHHCCCC-------C--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99846878-------8--88640689999999986332014567778867999748997778898873029999999998
Q ss_pred CCCEEEEEEC
Q ss_conf 6981899842
Q gi|255764508|r 195 FGINTKASCS 204 (242)
Q Consensus 195 ~gi~~~p~~~ 204 (242)
.|++++.+..
T Consensus 227 ~gi~IyTIgv 236 (326)
T PRK13685 227 QGVPISTISF 236 (326)
T ss_pred CCCCEEEEEE
T ss_conf 5994899997
No 116
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=43.98 E-value=23 Score=15.62 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 999998252005753389706888877888279999999974999878111101466577799
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQ 162 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~ 162 (242)
|.+|.++| ++++++++.. ..+++.+.+.+.+.|+...-+..+=..++-.+++.
T Consensus 15 A~~LA~~G------a~V~i~y~~~----e~~~~~~~~e~~~~G~~a~~~~~dvs~~~~~~~~~ 67 (238)
T TIGR01830 15 ALKLAKEG------AKVIITYRTS----EEGAEEVVEEIKELGVKAAGVVLDVSDREDVKALV 67 (238)
T ss_pred HHHHHHCC------CEEEEECCCC----HHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH
T ss_conf 99998679------9599965982----57888999999856975999960388889999999
No 117
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=43.66 E-value=23 Score=15.59 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0589999999999825200575338970688887788827999999997499987-811110146657779999999762
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERD-DIKLETQSLDTFQNAQFSSSMIKN 170 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~-~I~~e~~s~nT~ena~~~~~il~~ 170 (242)
.+.+++..|++..+.... ..|++-|.+... .+..++++...|.+-= .=|+-. |..| +.++.
T Consensus 50 kT~~~L~~A~~~l~~~~~----~~ILfVgtk~qa-----~~~v~~~A~~~g~~yv~~RWlgG----~LTN-----~~l~~ 111 (204)
T PRK04020 50 KTDERIRIAAKFLSRYEP----EKILVVSSRQYG-----QKPVKKFAEVVGAKAITGRFIPG----TLTN-----PSLKG 111 (204)
T ss_pred HHHHHHHHHHHHHHHCCC----CEEEEEECCHHH-----HHHHHHHHHHHCCEEECCCCCCC----CCCC-----HHHCC
T ss_conf 999999999999996079----849999798999-----99999999996990682622798----6568-----31302
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 368640885345889999999997698189984-2664431-1137545788989999999999999998648
Q gi|255764508|r 171 MQGKNIILVSSAYHLKRSQLYFQHFGINTKASC-SDYLNAY-YSIIPLSANFYLTELALKEYIGILIAYYRGN 241 (242)
Q Consensus 171 ~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~-~d~~~~~-~~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~ 241 (242)
..-..+++|+++-.-.-|...+.+.|+.+++.. ||..+.. ..-+|..+.-..+-..+.-.++--+.+.||.
T Consensus 112 ~~ePdlliV~Dp~~e~~AV~EA~~l~IPvIaivDTn~dp~~Vdy~IP~NDds~~SI~Li~~lLa~ail~~kg~ 184 (204)
T PRK04020 112 YIEPDVLVVTDPRGDAQAVKEAIEIGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALIYWLLAREILRERGE 184 (204)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5689989997886304899999876999899827998911157365168830738999999999999997397
No 118
>pfam01936 DUF88 Protein of unknown function DUF88. This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs).
Probab=43.14 E-value=24 Score=15.54 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=49.4
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH--HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999974999878111101466577799999--9976236864088534588999999999769818998426
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS--SMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~--~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
....+.|.+.|+.....-.-...+|+.+.....- +++.+++.+.++|||++--..++....+..|..+..+...
T Consensus 47 ~~~~~~L~~~Gi~v~~~~~~~~~Kn~~D~~l~vD~~~~~~~~~~d~~ilvsgD~Df~~~~~~lr~~g~~v~~~~~~ 122 (140)
T pfam01936 47 RKFPDALSSTGIPVQHKPLTKSGKNAVDVGLAVDALELAYDNNPDTFVLVSGDGDFAPLLERLRERGKRVEVLGAE 122 (140)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7799999986971899455158765034999999999973389998999926740799999999889999999658
No 119
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=42.66 E-value=24 Score=15.49 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH-CCHH------HHHHHHHHHHHH
Q ss_conf 589999999999825200575338970688887788827999999997499987811-1101------466577799999
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIK-LETQ------SLDTFQNAQFSS 165 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~-~e~~------s~nT~ena~~~~ 165 (242)
..+++.+|++..++.++-. -+|+|||++-.-...+-+.+-+-|.+ ||--+|+ +-++ .+=| -...
T Consensus 142 ~~~~~~~al~YIa~hPeI~---eVllSGGDPL~ls~~~L~~ll~~L~~--IpHv~iiRi~TR~pvv~P~RIt----~~L~ 212 (369)
T COG1509 142 NKEEWDKALDYIAAHPEIR---EVLLSGGDPLSLSDKKLEWLLKRLRA--IPHVKIIRIGTRLPVVLPQRIT----DELC 212 (369)
T ss_pred CHHHHHHHHHHHHCCCHHH---EEEECCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCEECHHHHC----HHHH
T ss_conf 8899999999997395165---17740787563688999999998754--8964699862467431544406----9999
Q ss_pred HHHHHCCCCCEEEECCHHHHH-------HHHHHHHHCCCEE
Q ss_conf 997623686408853458899-------9999999769818
Q gi|255764508|r 166 SMIKNMQGKNIILVSSAYHLK-------RSQLYFQHFGINT 199 (242)
Q Consensus 166 ~il~~~~~~~vilVTsa~Hm~-------RA~~~f~~~gi~~ 199 (242)
+++++. .+.+.++|..-|-. -|+...++.|+..
T Consensus 213 ~~l~~~-~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l 252 (369)
T COG1509 213 EILGKS-RKPVWLVTHFNHPNEITPEAREACAKLRDAGVPL 252 (369)
T ss_pred HHHHCC-CCEEEEECCCCCHHHCCHHHHHHHHHHHHCCCEE
T ss_conf 987235-8607998035883546899999999999759565
No 120
>PRK09354 recA recombinase A; Provisional
Probab=42.63 E-value=24 Score=15.49 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC-HHHHHHHH
Q ss_conf 82799999999749998781111014665777999999976236864088534-58899999
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS-AYHLKRSQ 189 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs-a~Hm~RA~ 189 (242)
+|...-..|+..+||+.+++++-.- +|.|++....+-+-..+.-.+++|-| +--.||+.
T Consensus 96 aE~ald~~~a~~lGVd~d~llv~qp--d~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~E 155 (350)
T PRK09354 96 AEHALDPVYAKKLGVDIDNLLVSQP--DTGEQALEIADALVRSGAVDLIVVDSVAALVPKAE 155 (350)
T ss_pred ECCCCCHHHHHHCCCCHHHEEEECC--CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 0002798899984977157178568--67999999999998548841899825334576888
No 121
>PRK00969 hypothetical protein; Provisional
Probab=42.08 E-value=3.5 Score=20.90 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--CCHHHHHHHHHHHC-------C-CCHHHHHCCHHHHHHH
Q ss_conf 682058999999999982520057533897068888778--88279999999974-------9-9987811110146657
Q gi|255764508|r 89 PSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHG--LAESIVYNNKLLES-------G-VERDDIKLETQSLDTF 158 (242)
Q Consensus 89 ~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~--~~Ea~~m~~~l~~~-------G-v~~~~I~~e~~s~nT~ 158 (242)
++.....|+.+|++|.+--..-+ ...+-..-.+-..-| ..||+ ..+.+. | ...++|+.++...+|.
T Consensus 286 ~sHtvVG~V~~GiELid~a~~G~-~itv~t~Peri~llG~t~~eA~---~~~~~~gIe~~~dg~~~~daVVV~Q~P~~Tl 361 (508)
T PRK00969 286 LSHTVVGRVTHGIELVDFAEEGD-RLTVKTVPERLDLLGLTLKEAE---ELLEKLGIELEKDGYTGEDAVVVEQDPPTTL 361 (508)
T ss_pred CCCCEEEEEECCEEEEECCCCCC-EEEEEECCHHHEECCCCHHHHH---HHHHHCCCEEEECCCCCCCCEEEECCCCHHH
T ss_conf 66204678803523320305787-7999957467142289899999---9998669689844777898389965895178
Q ss_pred HHHHHHHHHHHHCCCCCEEEEC-CHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf 7799999997623686408853-458899999999976-9818998
Q gi|255764508|r 159 QNAQFSSSMIKNMQGKNIILVS-SAYHLKRSQLYFQHF-GINTKAS 202 (242)
Q Consensus 159 ena~~~~~il~~~~~~~vilVT-sa~Hm~RA~~~f~~~-gi~~~p~ 202 (242)
|=...-+--+..-..++++=|+ -+-+-||+.++||+. |+...|+
T Consensus 362 dIL~~~kV~~~~i~~~~li~IeLydd~AP~s~~yFR~~tGL~~~~V 407 (508)
T PRK00969 362 DILKEGKVTTKGIPPDKLIEIELYDDKAPRSVWYFRKVTGLKTKPV 407 (508)
T ss_pred HHHHCCCEEEEEECHHHEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7751581799961868779999746578357899988508752436
No 122
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945 This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=41.94 E-value=12 Score=17.42 Aligned_cols=58 Identities=9% Similarity=-0.053 Sum_probs=39.1
Q ss_pred CCHHHHHCCHHHH----HHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9987811110146----6577799999997623686408853458899999999976981899
Q gi|255764508|r 143 VERDDIKLETQSL----DTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 143 v~~~~I~~e~~s~----nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p 201 (242)
|+-..+.-+=.|. --+-|+..+-+.++.+|. +..++|+++|+-|--.+++..+-...|
T Consensus 88 v~~~~~~~~l~s~~q~tkl~p~m~~~i~~~~~~Gf-kt~~lTNN~~l~~GPGmaq~~~~~~~p 149 (228)
T TIGR02247 88 VRIKPVFELLSSEIQVTKLLPEMVKAIKSLRAKGF-KTALLTNNFYLDKGPGMAQEAEEALLP 149 (228)
T ss_pred CCCCEEEEEEECCEECCCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCHHHHCCCCCCH
T ss_conf 34310233430640002568789999999975777-588861673056776401220466113
No 123
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=41.89 E-value=25 Score=15.42 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 14665777999999
Q gi|255764508|r 153 QSLDTFQNAQFSSS 166 (242)
Q Consensus 153 ~s~nT~ena~~~~~ 166 (242)
-+-.--|+...+++
T Consensus 116 m~i~~~Ee~fgvk~ 129 (425)
T TIGR01941 116 MSIEIPEEVFGVKK 129 (425)
T ss_pred CEEEECEEEECCCC
T ss_conf 77873203423110
No 124
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=41.64 E-value=25 Score=15.39 Aligned_cols=85 Identities=21% Similarity=0.151 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHH-------HHHHHHHHHHHH
Q ss_conf 8999999999982520057533897068888778882799999999749998781111014-------665777999999
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQS-------LDTFQNAQFSSS 166 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s-------~nT~ena~~~~~ 166 (242)
.+-..+-++|.+++ +|++.+++. .+..+-..+.+.+.+.|+ ++|++|+.+ ..|++|....++
T Consensus 128 ~~N~~~m~~lA~~~-----~~Pv~v~a~----~dl~~l~~L~~~l~~~Gi--kdlVLDPgT~~~g~~l~~t~~n~~~IRR 196 (384)
T pfam03599 128 LDNYKEIAELALEY-----KHPVLLWSI----NDLNELKNLNRKLLKAGV--KDIVLDPTTEALGYGIKDTIDNFVRIRR 196 (384)
T ss_pred HHHHHHHHHHHHHC-----CCCEEEECC----CCHHHHHHHHHHHHHCCC--CCEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98999999999974-----982899748----889999999999997698--5489889886667468999999999999
Q ss_pred HHHH----CCCCCEEEECCHHHHHHHH
Q ss_conf 9762----3686408853458899999
Q gi|255764508|r 167 MIKN----MQGKNIILVSSAYHLKRSQ 189 (242)
Q Consensus 167 il~~----~~~~~vilVTsa~Hm~RA~ 189 (242)
..-+ .+..-+-+.|+++.+.-+.
T Consensus 197 aAlkgdr~lgyPi~~~~~~a~~~~~~~ 223 (384)
T pfam03599 197 AAIKGDKDLGFPISSGTTNAWGARESW 223 (384)
T ss_pred HHHCCCCCCCCCEEECCCCCCHHHHHH
T ss_conf 986579778885551456664036889
No 125
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=41.61 E-value=3.5 Score=20.93 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--CCHHHHHHHHHHHC-------C-CCHHHHHCCHHHHHHH
Q ss_conf 682058999999999982520057533897068888778--88279999999974-------9-9987811110146657
Q gi|255764508|r 89 PSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHG--LAESIVYNNKLLES-------G-VERDDIKLETQSLDTF 158 (242)
Q Consensus 89 ~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~--~~Ea~~m~~~l~~~-------G-v~~~~I~~e~~s~nT~ 158 (242)
++.....|+.+|++|.+--..- ....+-..-.+-..-| ..||+ ..+.+. | ...++|+.++...+|.
T Consensus 283 ~sHtvVG~V~~GiELid~a~~G-~~ltv~t~Peri~llGlt~~eA~---~~~~~~gIe~~~dG~~~~daVVV~Q~P~~Tl 358 (503)
T TIGR03268 283 LSHNVVGHVTRGIELIDIAQEG-DRLSVETEPPRIDLVGLTQEEAE---ELLEELGIELEKEGVDGDDAVVVKQEPPYTL 358 (503)
T ss_pred CCCCEEEEEECCEEEEEHHCCC-CEEEEEECCHHHEECCCCHHHHH---HHHHHCCCEEEECCCCCCCCEEEECCCCHHH
T ss_conf 6630467880351321031479-77999847457042388899999---9998669689844777898489965894278
Q ss_pred HHHHHHHHHHHHCCCCCEEEEC-CHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf 7799999997623686408853-458899999999976-9818998
Q gi|255764508|r 159 QNAQFSSSMIKNMQGKNIILVS-SAYHLKRSQLYFQHF-GINTKAS 202 (242)
Q Consensus 159 ena~~~~~il~~~~~~~vilVT-sa~Hm~RA~~~f~~~-gi~~~p~ 202 (242)
|=...-+--+..-..++++=|+ -+-+-||+.++||+. |+...|+
T Consensus 359 eIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFR~~tGL~~~~V 404 (503)
T TIGR03268 359 DVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFTGLKTKPV 404 (503)
T ss_pred HHHHCCCEEEEEECHHHEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7752581799961868779999746578357899988518752436
No 126
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit; InterPro: IPR012780 Carbon monoxide dehydrogenases catalyse the reversible oxidation of carbon monoxide to carbon dioxide as shown below , : CO + H(2)O + A == CO(2) + AH(2) A variety of electron acceptors can be used by these enzymes including ferredoxin, methyl viologen and benzyl viologen. Under anaerobic conditions, carbon monoxide is utilised by a number of methanogenic archaea and acetogenic, sulphate-reducing or phototrophic bacteria. Under aerobic conditions carbon monoxide can be used as sole carbon and energy source by the carboxidotrophic bacteria, a taxonomically diverse group of obligate or facultative chemolithoautotrophic species. The anaerobic dehydrogenases are mostly nickel-containing iron-sulphur enzymes, while the The aerobic enzymes categorised so far are molybdenum-containing iron-sulphur proteins. This entry represents the large subunit of the molybdenum-containing carbon monoxide dehydrogenase found in aerobic bacteria. This enzyme is a dimer of heterotrimers, where each heterotrimer consists of a small iron-sulphur subunit, a medium FAD-containing flavoprotein subunit and a large molybdopterin-containign subunit which contains the active site , . The large subunit is divided into two domains. The N-terminal domain is composed of mainly of a five-and four-stranded mixed beta-sheet and interacts with the small and medium subunits. The C-terminal domain contains a region which interacts with its counterpart in the overall dimer, providing the main dimer contact, and a beta-sheet surrounded by alpha helices. The active site located in this subunit contains a novel dinuclear heterometal [CuSMo(=O)OH] cluster.; GO: 0005507 copper ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0030151 molybdenum ion binding.
Probab=40.98 E-value=12 Score=17.52 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 88887788827999999997499987811110146
Q gi|255764508|r 121 GDPQKHGLAESIVYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 121 g~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
.+|+++.++=|++++ .++|||+++|.+|+--+
T Consensus 499 sQGQGH~TTyAQIiA---~ELGIP~e~I~v~~GdT 530 (775)
T TIGR02416 499 SQGQGHETTYAQIIA---TELGIPAEDIDVEEGDT 530 (775)
T ss_pred CCCCCCCCHHHHHHH---HHCCCCCCCEEEECCCC
T ss_conf 369864304666655---55278801106720787
No 127
>PRK13529 malate dehydrogenase; Provisional
Probab=40.45 E-value=13 Score=17.28 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=12.3
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 33897068888778882799999999749998
Q gi|255764508|r 114 CTIIISGGDPQKHGLAESIVYNNKLLESGVER 145 (242)
Q Consensus 114 ~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~ 145 (242)
.++++.|.... ++.-|+...+.+.+.|++.
T Consensus 296 ~riv~~GAGsA--g~GIA~~l~~~~~~~Gls~ 325 (563)
T PRK13529 296 QRVVFLGAGSA--GCGIAEQIVAAMVREGLSE 325 (563)
T ss_pred CEEEEECCCHH--HHHHHHHHHHHHHHCCCCH
T ss_conf 47999657748--7899999999998769998
No 128
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=40.33 E-value=26 Score=15.26 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=54.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCC-H-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 999998252005753389706888877888-2-79999999974999878111101466577799999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLA-E-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~-E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
+-.|++.|.. +|.+-+|........ + -+..++.+.+.|++.+.+..+. ..+..+.....++++++.+..+.+
T Consensus 104 ~~~L~~~Ghr-----~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~Ai 177 (265)
T cd06291 104 AEELIERGCK-----HIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQE-NFDDAEKKEEIKELLEEYPDIDGI 177 (265)
T ss_pred HHHHHHCCCC-----EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9999973996-----4999966888874899999999999997699960899768-898699999999998559998843
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+|+.--..++..++..|+++
T Consensus 178 ~~~nD~~A~g~~~al~~~g~~v 199 (265)
T cd06291 178 FASNDLTAILVLKEAQQRGIRV 199 (265)
T ss_pred ECCCHHHHHHHHHHHHHCCCCC
T ss_conf 2166899999999999819999
No 129
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=40.06 E-value=26 Score=15.24 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=50.8
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHH--HHCCHHHHHHHHHHH-HHHHHHHHCCCCCEE
Q ss_conf 99982520057533897068888778882-79999999974999878--111101466577799-999997623686408
Q gi|255764508|r 102 RLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDD--IKLETQSLDTFQNAQ-FSSSMIKNMQGKNII 177 (242)
Q Consensus 102 ~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~--I~~e~~s~nT~ena~-~~~~il~~~~~~~vi 177 (242)
.|+..|.. +|.+-||........| -+..++.+.+.|++... ++.. ..+.++.. ..++++......+.+
T Consensus 168 ~L~~~Ghr-----~I~~i~~~~~~~~~~~R~~gf~~al~~~gl~~~~~~~~~~---~~~~~~g~~~~~~ll~~~~~ptAi 239 (327)
T PRK10423 168 YLIDKGHT-----RIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG---DFEFNGGFDAMQQLLAHPLRPQAV 239 (327)
T ss_pred HHHHCCCC-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC---CCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99975997-----4999668876617999999999999985999884369960---467378999999998479999845
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+..|+..-.-++..++..|+.+
T Consensus 240 ~~~nD~~A~g~~~al~~~g~~i 261 (327)
T PRK10423 240 FTGNDAMAVGVYQALYQAGLQV 261 (327)
T ss_pred EECCCHHHHHHHHHHHHCCCCC
T ss_conf 5178099999999999869999
No 130
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=40.03 E-value=26 Score=15.23 Aligned_cols=90 Identities=12% Similarity=0.164 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH------
Q ss_conf 99999999825200575338970688887788827999999997499987811110146657779999999762------
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKN------ 170 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~------ 170 (242)
-..|+++.++|+.- -+++.||+|.--|.+....|- .-|.|..+-+++-.+.. .....++...
T Consensus 98 ~~~Gl~~I~~gkVa----vlllAGGqGTRLG~~~PKG~~----~igl~s~ksLfql~aer----i~~lq~la~~~~~~~~ 165 (499)
T PTZ00339 98 KEVGLEIIKKGEVA----VLILAGGLGTRLGSDKPKGLL----ECTPLKKKSLFQFHCEK----IRRLEEMAAAASGGGD 165 (499)
T ss_pred HHHHHHHHHCCCEE----EEEECCCCCCCCCCCCCCEEE----ECCCCCCCCHHHHHHHH----HHHHHHHHHHHCCCCC
T ss_conf 99889999739889----999507874667999997111----15899987199999999----9999999887506788
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHC---CCE
Q ss_conf 3686408853458899999999976---981
Q gi|255764508|r 171 MQGKNIILVSSAYHLKRSQLYFQHF---GIN 198 (242)
Q Consensus 171 ~~~~~vilVTsa~Hm~RA~~~f~~~---gi~ 198 (242)
...-.+++.||..-..-....|+.. |++
T Consensus 166 ~~~ip~yIMTS~~t~~~T~~ff~~~~~FGl~ 196 (499)
T PTZ00339 166 DPTIYILVLTSSFNHDQTRQFLQENNFFGLD 196 (499)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
T ss_conf 8860399977850469999999867777887
No 131
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=39.70 E-value=27 Score=15.20 Aligned_cols=71 Identities=11% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHH----HHHHHHHHHHC--CCCCEE--EECC
Q ss_conf 575338970688-88778882799999999749998781111014665777----99999997623--686408--8534
Q gi|255764508|r 111 SMHCTIIISGGD-PQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQN----AQFSSSMIKNM--QGKNII--LVSS 181 (242)
Q Consensus 111 ~~~~~ii~SGg~-~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~en----a~~~~~il~~~--~~~~vi--lVTs 181 (242)
++++.+|.-||+ ++......-....+.+.+.|.+ .+|.++-.--|+-.+ ..-.+.++.+. |.+.+. +|-|
T Consensus 226 Np~~HvILRGG~~~PNYda~~v~~~~~~l~~~gl~-~~lmID~SH~NS~K~~~~Q~~V~~~v~~Qi~~G~~~I~GvMiES 304 (351)
T COG0722 226 NPDGHVILRGGKKGPNYDAASVAAACEQLEKAGLP-PRLMIDCSHANSGKDYRRQPKVARDVCQQIAAGERAIRGVMIES 304 (351)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEH
T ss_conf 98735993179889998989999999999976999-74898646775664766738999999999866876058998701
Q ss_pred H
Q ss_conf 5
Q gi|255764508|r 182 A 182 (242)
Q Consensus 182 a 182 (242)
.
T Consensus 305 ~ 305 (351)
T COG0722 305 H 305 (351)
T ss_pred H
T ss_conf 2
No 132
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=39.69 E-value=27 Score=15.20 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHH-HCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 058999999999982520057533897068888778882799999999749998781-1110146657779999999762
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDI-KLETQSLDTFQNAQFSSSMIKN 170 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I-~~e~~s~nT~ena~~~~~il~~ 170 (242)
...+-+.+|+.= ++ -|+++||-|++. ++=+.+.=+....+..|.+|| ++||. .-++.
T Consensus 127 aQ~d~l~~Av~a------r~---NIlv~GGTGSGK-TTLaNAlla~I~~l~~P~dR~vIiEDT------------~ElQC 184 (315)
T TIGR02782 127 AQRDVLREAVAA------RK---NILVVGGTGSGK-TTLANALLAEIAKLNDPDDRVVIIEDT------------AELQC 184 (315)
T ss_pred HHHHHHHHHHHH------CC---CEEEECCCCCCH-HHHHHHHHHHHHHCCCCCCEEEEEECC------------HHHHH
T ss_conf 899999999971------29---889981458857-999999999885216999618998547------------13201
Q ss_pred CCCCCEEEECCHHH---HHHHHHH
Q ss_conf 36864088534588---9999999
Q gi|255764508|r 171 MQGKNIILVSSAYH---LKRSQLY 191 (242)
Q Consensus 171 ~~~~~vilVTsa~H---m~RA~~~ 191 (242)
.=.+.|.+=|++-= |-|-...
T Consensus 185 ~A~N~V~lrT~d~~Gi~M~~LLk~ 208 (315)
T TIGR02782 185 AAENLVALRTSDDVGISMTRLLKA 208 (315)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 378706874489866147888887
No 133
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.57 E-value=27 Score=15.19 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=42.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 81111014665777999999976236864088534588999999999769818998426644
Q gi|255764508|r 147 DIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLN 208 (242)
Q Consensus 147 ~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~ 208 (242)
-++.-..|=||.|.....++-.+. + -+++.|||.=.|.+ ++++.++..+..|..+.+
T Consensus 46 lvi~~S~SGnTeEtl~~~~~a~~~-g-a~vi~itsGG~L~~---~a~~~~~p~v~iP~g~~P 102 (119)
T cd05017 46 LVIAVSYSGNTEETLSAVEQAKER-G-AKIVAITSGGKLLE---MAREHGVPVIIIPKGLQP 102 (119)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-C-CEEEEECCCCHHHH---HHHHCCCCEEECCCCCCC
T ss_conf 899992897968999999999985-9-90999849955999---998879998987999995
No 134
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=39.50 E-value=27 Score=15.18 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3999999999999830114899999999999999998999999999996212454
Q gi|255764508|r 2 LLSWIFLIVSYWHLLCQSIRKIFFMSCFMLLFSFIGWGIIPTILLKHLQFSYQRP 56 (242)
Q Consensus 2 ~l~li~lii~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~le~~~~~~ 56 (242)
.+=++|.++.+..+|..+-... ++.++.++.++..+..++-.|-+.+|+.|++.
T Consensus 267 ~lDl~F~~vF~AVMf~YSp~LT-~vV~~SL~~Y~~~s~~v~p~LRkRVe~kfe~~ 320 (703)
T TIGR01846 267 VLDLLFVVVFLAVMFFYSPTLT-GVVIGSLVCYALLSVFVSPILRKRVEDKFERS 320 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9877788867878876401688-78999999999999985001102357764134
No 135
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=39.49 E-value=22 Score=15.70 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=21.9
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 38970688887788827999999997499987811110146657779999999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSM 167 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~i 167 (242)
.++++||.|- +=--.|-+.+...|-.. ++.+-. +..|.+.+.+-.++
T Consensus 102 ~lliagG~GI----tP~~sml~~l~~~~~~~-~~~l~~-~~r~~~d~~~~~el 148 (218)
T cd06196 102 GVFIAGGAGI----TPFIAILRDLAAKGKLE-GNTLIF-ANKTEKDIILKDEL 148 (218)
T ss_pred EEEEECCCCC----HHHHHHHHHHHHCCCCC-CEEEEE-ECCCHHHHHHHHHH
T ss_conf 0999657560----26999999999729989-989999-68988898899999
No 136
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=38.66 E-value=28 Score=15.10 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEC-CCCCCCCCC---CHHHHHHHHHHHC-C---------------CCHHHHHCCHHHH
Q ss_conf 999999999825200575338970-688887788---8279999999974-9---------------9987811110146
Q gi|255764508|r 96 RIFETMRLYKSCKQHSMHCTIIIS-GGDPQKHGL---AESIVYNNKLLES-G---------------VERDDIKLETQSL 155 (242)
Q Consensus 96 Rl~~a~~L~~~~~~~~~~~~ii~S-Gg~~~~~~~---~Ea~~m~~~l~~~-G---------------v~~~~I~~e~~s~ 155 (242)
.+.+.+..-+ ++ ..||++| ||.....+. .+|+..++++-.+ | ++-=++-+|..+.
T Consensus 60 ~i~~dI~~CQ---~~--GkkVlLSlGG~~g~~~l~s~~~A~~fA~~lw~~fg~g~~~~~~RPfG~avlDG~D~DiE~g~~ 134 (280)
T cd02877 60 QLGADIKHCQ---SK--GKKVLLSIGGAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP 134 (280)
T ss_pred HHHHHHHHHH---HC--CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEECCCCCC
T ss_conf 6899999999---87--998999736888861558989999999999997378876677577775133031011127884
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCHHH
Q ss_conf 65777999999976236864088534588
Q gi|255764508|r 156 DTFQNAQFSSSMIKNMQGKNIILVSSAYH 184 (242)
Q Consensus 156 nT~ena~~~~~il~~~~~~~vilVTsa~H 184 (242)
.-+.++...-+-+......+-+++|.|.-
T Consensus 135 ~~y~~l~~~Lr~l~~~~~~k~~~LTaAPq 163 (280)
T cd02877 135 ENYDALAKRLRSLFASDPSKKYYLTAAPQ 163 (280)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 03999999999986147885389985788
No 137
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=38.60 E-value=6.3 Score=19.28 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
Q ss_conf 8827999999997499987811110146657779999999762368640885345889
Q gi|255764508|r 128 LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHL 185 (242)
Q Consensus 128 ~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm 185 (242)
.+--+..+.+|.+++...++|++-|+|++- .|..-=+.+++++|..|+.+|=.|=|=
T Consensus 198 YsK~eliayFl~~L~LT~~Di~IlDR~~~d-knliiGQ~Vl~Nkg~AklgVVvHAEHf 254 (511)
T TIGR02918 198 YSKQELIAYFLKQLNLTKKDIIILDRSTGD-KNLIIGQAVLENKGPAKLGVVVHAEHF 254 (511)
T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCC-CEEEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf 186999999999606985668999736899-305871388875087028999974636
No 138
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=38.46 E-value=22 Score=15.73 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC-CCCCH-----HHHHHHHHHHCCCCHHHHHCCHHH----------HHH
Q ss_conf 89999999999825200575338970688887-78882-----799999999749998781111014----------665
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQK-HGLAE-----SIVYNNKLLESGVERDDIKLETQS----------LDT 157 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~-~~~~E-----a~~m~~~l~~~Gv~~~~I~~e~~s----------~nT 157 (242)
.+|+.+-+.|.|++-+ .+|.---+..+ ....| ++-+-+.+.+.|+|+++|++|+-. ..|
T Consensus 102 ~er~~~i~pLakkyga-----~vI~L~~de~Gip~tae~R~~ia~~i~~~a~~~Gi~~edi~~DpLv~~i~t~~~~~~~~ 176 (268)
T PRK07535 102 EERLEAVLPLVKKYNA-----PVVALTMDDTGIPKDAEVRLAVAKKLVEKAADFGIPPDDIYIDPLVLPLSAAQTAGVEV 176 (268)
T ss_pred HHHHHHHHHHHHHHCC-----EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCEEECCCHHHHHH
T ss_conf 0569999999998499-----79999428999999999999999999999998599889988845512100680789999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECC-HHHHHHH-------HHHHHHCCCEE-EEEECC
Q ss_conf 777999999976236864088534-5889999-------99999769818-998426
Q gi|255764508|r 158 FQNAQFSSSMIKNMQGKNIILVSS-AYHLKRS-------QLYFQHFGINT-KASCSD 205 (242)
Q Consensus 158 ~ena~~~~~il~~~~~~~vilVTs-a~Hm~RA-------~~~f~~~gi~~-~p~~~d 205 (242)
.|-.+..++.+. +.+.++=+++ .|-+|.= ..++-..|++. +-=|.|
T Consensus 177 leair~ik~~~P--~v~t~~GlSNiSFGlP~R~~lNs~FL~~a~~~GLd~aI~nP~~ 231 (268)
T PRK07535 177 LETIRRIKELYP--KVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILDPTD 231 (268)
T ss_pred HHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 999999998787--7775245400114753389999999999998699846459998
No 139
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=38.43 E-value=28 Score=15.07 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCC----EEEEEECCCCC-CCCCCCCCHHHHHHH
Q ss_conf 9999999762368640885345889999999997698----18998426644-311137545788989
Q gi|255764508|r 161 AQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGI----NTKASCSDYLN-AYYSIIPLSANFYLT 223 (242)
Q Consensus 161 a~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi----~~~p~~~d~~~-~~~~~~p~~~~l~~~ 223 (242)
....++++++.+++ +++-|.++=..=+....++.|. ..+.+-|||.+ ...|+.|..+.+...
T Consensus 78 ~~~l~~~i~~~~PD-~IV~Thp~~~~~~l~~lk~~~~~~~~p~~tViTD~~~~H~~W~~~~~D~y~Va 144 (169)
T pfam06925 78 ARELAALLKEFQPD-IIISTHPLPAAVPLSVLKSKGLLKRVLVVTVVTDFRTCHPFWLHPEIDRYYVP 144 (169)
T ss_pred HHHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEC
T ss_conf 99999999984939-99999762667899999983878899789998988666578168999989979
No 140
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=37.58 E-value=29 Score=14.99 Aligned_cols=91 Identities=10% Similarity=0.071 Sum_probs=49.9
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEEE
Q ss_conf 999982520057533897068888778882-79999999974999878111101466577799-9999976236864088
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNIIL 178 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vil 178 (242)
-.|.++|.. ++.+-++........+ .+.+++.+.+.|...... ... ...+.+++. ..++++.+++..+.++
T Consensus 111 ~~l~~~g~~-----~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~dai~ 183 (264)
T cd01537 111 EHLAEKGHR-----RIALLAGPLGSSTARERVAGFKDALKEAGPIEIVL-VQE-GDWDAEKGYQAAEELLTAHPDPTAIF 183 (264)
T ss_pred HHHHHCCCC-----CEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE-EEE-CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999862986-----24530488777069999999999999779998537-995-79998999999999985089976999
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
.+++.....++..+++.|++
T Consensus 184 ~~~d~~A~gv~~al~~~g~~ 203 (264)
T cd01537 184 AANDDMALGALRALREAGLR 203 (264)
T ss_pred ECCHHHHHHHHHHHHHCCCC
T ss_conf 89869999999999974999
No 141
>PRK09954 hypothetical protein; Provisional
Probab=37.33 E-value=29 Score=14.96 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=42.2
Q ss_pred CEEEEECCCCCCCCCCCCCCCCC----------CCCHHHHHHHHHHHHHHCCCCCCCCEEEEC-CCCCCCCCCCHHHHHH
Q ss_conf 58999625213777765554346----------820589999999999825200575338970-6888877888279999
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEP----------SFQSYSRIFETMRLYKSCKQHSMHCTIIIS-GGDPQKHGLAESIVYN 135 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~----------~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~S-Gg~~~~~~~~Ea~~m~ 135 (242)
..|||.||-.-.....+.....+ +... ---+.|..|.|.|... .+|-. |.| .+++.+.
T Consensus 58 ~~vvvIGganiD~~g~~~~~l~~~~SNpg~i~~s~GG-vGrNiA~nLarLG~~v----~lIs~VG~D------~~G~~ll 126 (362)
T PRK09954 58 EYCVVVGAINMDIRGMADIRYPQAASHPGTIHCSAGG-VGRNIAHNLALLGRDV----HLLSAIGDD------FYGETLL 126 (362)
T ss_pred CCEEEECCCEEEEEECCCCCCCCCCCCCCEEEECCCC-HHHHHHHHHHHCCCCE----EEEEEECCC------HHHHHHH
T ss_conf 7189988707864304477665699999636888884-8999999999769976----999996385------8799999
Q ss_pred HHHHHCCCCHHHHHC-CHHHHHHH
Q ss_conf 999974999878111-10146657
Q gi|255764508|r 136 NKLLESGVERDDIKL-ETQSLDTF 158 (242)
Q Consensus 136 ~~l~~~Gv~~~~I~~-e~~s~nT~ 158 (242)
+.+.+.||+.+.+.. ++.++.||
T Consensus 127 ~~l~~~GVd~~~v~~~~~~~T~ty 150 (362)
T PRK09954 127 EETRRAGVNVSGCIRLHGQSTSTY 150 (362)
T ss_pred HHHHHCCCCCCEEEECCCCCCCEE
T ss_conf 999985997330798489997189
No 142
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=37.32 E-value=29 Score=14.96 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99999999825200575338970688887788827999999997499987811110146657779999999762368640
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
+++=.++-++++ -+|.|||..+ |.-....-.++|.|.. ++-+=.+.-..|||.-...++.++|..
T Consensus 54 v~Ei~~~~~~hk------~li~TGgG~R------aRHiy~igldLgmPtG-vLa~L~~~vs~QNa~ml~~LLa~~G~~-- 118 (262)
T cd04255 54 VEEIVALRPEHK------LLILTGGGTR------ARHVYSIGLDLGMPTG-VLAKLGASVSEQNAEMLATLLAKHGGS-- 118 (262)
T ss_pred HHHHHHHHHHCC------EEEEECCCHH------HHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCE--
T ss_conf 999997513152------8998367500------3343123414799611-567764224464799999984313870--
Q ss_pred EEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 88534588999999999769818998
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
.+-++.+- ..-+|-++|.-++..
T Consensus 119 ~i~~~~~~---~l~~~l~~~~~~v~~ 141 (262)
T cd04255 119 KVGHGDLL---QLPTFLKAGRAPVIS 141 (262)
T ss_pred EECCCCHH---HHHHHHHCCCEEEEE
T ss_conf 25787789---999998658710442
No 143
>PRK07748 sporulation inhibitor KapD; Provisional
Probab=37.20 E-value=20 Score=15.99 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=12.7
Q ss_pred CCCEEEECC-HHHHHHHHHHHHHCCCE
Q ss_conf 864088534-58899999999976981
Q gi|255764508|r 173 GKNIILVSS-AYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 173 ~~~vilVTs-a~Hm~RA~~~f~~~gi~ 198 (242)
.++.+++|- .+-+..-...++..|++
T Consensus 92 ~~~~~~~tWG~~D~~~L~~~c~~~~i~ 118 (205)
T PRK07748 92 RCKPTIVTWGNMDMKVLKHNCEKAGVP 118 (205)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCC
T ss_conf 787289871788999999999993899
No 144
>pfam11019 DUF2608 Protein of unknown function (DUF2608). This family is conserved in Bacteria. The function is not known.
Probab=37.08 E-value=29 Score=14.94 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=19.4
Q ss_pred CCCEEEECC-HHHHHHHHHHHHHCCCEEEEE
Q ss_conf 864088534-588999999999769818998
Q gi|255764508|r 173 GKNIILVSS-AYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 173 ~~~vilVTs-a~Hm~RA~~~f~~~gi~~~p~ 202 (242)
+++|+.|.+ .-|..+....+++.|+..+++
T Consensus 177 P~~IIfIDd~~enl~s~~~~ck~~~I~f~G~ 207 (251)
T pfam11019 177 PKKIIFVDDNKENLESMGEACKKANILFLGI 207 (251)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8659997598899999999996589947999
No 145
>pfam00691 OmpA OmpA family. The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Probab=36.56 E-value=30 Score=14.89 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC-------CC--HHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 82058999999999982520057533897068888778-------88--2799999999749998781111
Q gi|255764508|r 90 SFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHG-------LA--ESIVYNNKLLESGVERDDIKLE 151 (242)
Q Consensus 90 ~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~-------~~--Ea~~m~~~l~~~Gv~~~~I~~e 151 (242)
...+...+.+-++..+... ...+|.+.|- ....+ .+ =|+..+++|++.||++++|...
T Consensus 10 ~~~~~~~L~~~a~~l~~~~---~~~~v~I~Gh-tD~~g~~~~N~~LS~~RA~~V~~~L~~~Gv~~~ri~~~ 76 (97)
T pfam00691 10 TAEARETLDRLAEVLKAPE---LKIAIKIEGH-TDSRGSAKYNWELSARRAQAVANYLVNHGIPPSRISVE 76 (97)
T ss_pred CHHHHHHHHHHHHHHHHCC---CCEEEEEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
T ss_conf 9899999999999997189---9728999999-89999888999999999999999999859997898998
No 146
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.28 E-value=27 Score=15.15 Aligned_cols=103 Identities=13% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH-HHHCCCCH--HHHHCC-HHHHHHHHHHHHHH
Q ss_conf 820589999999999825200575338970688887788827999999-99749998--781111-01466577799999
Q gi|255764508|r 90 SFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNK-LLESGVER--DDIKLE-TQSLDTFQNAQFSS 165 (242)
Q Consensus 90 ~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~-l~~~Gv~~--~~I~~e-~~s~nT~ena~~~~ 165 (242)
.++....+..+++...+. + +.-+++- ..+.+.+. ..-++.| +.+.|.+. .+.-+. ..-.-+|.- -+
T Consensus 251 ~~d~g~qL~~Al~~I~~e---g-GvlVyLr-~egrgigl--~~ki~ay~lqd~g~dt~ean~~lg~~~D~R~YGi---GA 320 (387)
T PRK09318 251 RCDCGSQLENALRMISKE---G-GILIYLR-QEGRGIGL--SNKIKAYELQDKGLDTVEANLALGFKEDERDYAA---AF 320 (387)
T ss_pred CCCCHHHHHHHHHHHHHC---C-CEEEEEE-CCCCCCCH--HHHHHHHHHHHCCCCCHHCHHCCCCCCCCCCCHH---HH
T ss_conf 888557999999999855---9-8899992-58865106--7777766644427873000000477666651339---99
Q ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEE---EEECC
Q ss_conf 99762368640885345889999999997698189---98426
Q gi|255764508|r 166 SMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTK---ASCSD 205 (242)
Q Consensus 166 ~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~---p~~~d 205 (242)
|||+..|.+++.|.|+... -..-.+..|++++ |.++.
T Consensus 321 QIL~dLGV~kmrLLTnnP~---K~~gL~GfGLeIve~vPl~~~ 360 (387)
T PRK09318 321 QILKALGIEKVRLLTNNPR---KTKALEKYGIEVVETVPLYGE 360 (387)
T ss_pred HHHHHCCCCCEEEECCCCC---CHHHHHHCCCEEEEEEECCCC
T ss_conf 9999869993799689950---455574279789888715899
No 147
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=36.26 E-value=27 Score=15.15 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=18.8
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 897068888778882799999999749998781111014665777999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQF 163 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~ 163 (242)
++++||.| ++=--.|-+.+.+.+-. ..+.+-.-.+ |.+++.+
T Consensus 102 vlIAgG~G----ItP~~s~l~~~~~~~~~-~~v~l~~g~r-~~~~~~~ 143 (224)
T cd06189 102 ILIAGGTG----FAPIKSILEHLLAQGSK-RPIHLYWGAR-TEEDLYL 143 (224)
T ss_pred EEEECCCC----CCHHHHHHHHHHHCCCC-CCCEEEECCC-CHHHHHH
T ss_conf 99936877----55399999999975999-9816774269-9799868
No 148
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=36.22 E-value=30 Score=14.85 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=20.7
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 3897068888778882799999999749998781111014665777999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQF 163 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~ 163 (242)
-++++||.|-. =-..|.+.+.+.+-+ .++.+-..+++. +...+
T Consensus 105 ~vlIagG~GIt----P~~s~l~~l~~~~~~-~~v~l~yg~r~~-~d~~~ 147 (228)
T cd06209 105 LLMLAGGTGLA----PFLSMLDVLAEDGSA-HPVHLVYGVTRD-ADLVE 147 (228)
T ss_pred EEEEECCCCCC----HHHHHHHHHHHCCCC-CCEEEEEECCCH-HHHHH
T ss_conf 89996687734----299999999975999-838999824978-99878
No 149
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=36.19 E-value=27 Score=15.19 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 89706888877888279999999974999878111101466577799999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS 165 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~ 165 (242)
++++||.|-. =--.|-+.+.+.|.+. ++.+-..++ +.+.+.+..
T Consensus 113 vlIAgG~GIt----P~~s~l~~l~~~~~~~-~v~l~~~~r-~~~d~~~~~ 156 (238)
T cd06211 113 IFIAGGSGLS----SPRSMILDLLERGDTR-KITLFFGAR-TRAELYYLD 156 (238)
T ss_pred EEEECCCCCC----HHHHHHHHHHHCCCCC-EEEEEECCC-CHHHHHHHH
T ss_conf 9997487724----5999999999759996-499994268-879989999
No 150
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=36.09 E-value=27 Score=15.17 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=18.5
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHH
Q ss_conf 389706888877888279999999974999878111101466
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLD 156 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~n 156 (242)
-++++||.|-. =-..|-+.+.+.+- ..++.+-..+++
T Consensus 103 ivliAgG~GIt----P~~s~l~~~~~~~~-~~~v~l~~g~r~ 139 (227)
T cd06213 103 ILCIAGGSGLA----PILAILEQARAAGT-KRDVTLLFGART 139 (227)
T ss_pred EEEEECCCCCC----HHHHHHHHHHHCCC-CCCCEEEECCCC
T ss_conf 89997684644----09999999997399-877478751599
No 151
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=35.98 E-value=30 Score=14.83 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=61.5
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 8999625213777765554346820-----58999999999982520057533897068888778882799999999749
Q gi|255764508|r 68 IIVLLGNGTTIIPTIPAIRIEPSFQ-----SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESG 142 (242)
Q Consensus 68 ~IVVLGgG~~~~~~~~~~~~~~~~~-----~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~G 142 (242)
.-|..|||.+..-++...-.--.++ ..+-+.++++-.++.. +..+|.+-= +.. .-...+.+.|
T Consensus 142 ~AV~~GGg~nHR~gLsD~vLIKdNH~~~~~~~~~~~~ai~~~r~~~---p~~kIeVEv-----~tl----~~~~ea~~~g 209 (284)
T PRK06096 142 QAILAAGGLIHRAGCAETILLFANHRHFLHDNQDWSGAINQLRRHA---PEKKIVVEA-----DTP----KEAIAALRAQ 209 (284)
T ss_pred HHHHHCCCCCCCCCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHC---CCCCEEEEE-----CCH----HHHHHHHHCC
T ss_conf 9999759304468876358870024988725357999999999758---999889980-----999----9999998579
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 99878111101466577799999997623686408853458899999999976981899842664431
Q gi|255764508|r 143 VERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAY 210 (242)
Q Consensus 143 v~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~ 210 (242)
+ +.|.+|+-+-....++. ++++..+.+-.+-++-.-..-....+ .+.|++++-..+-|...+
T Consensus 210 a--D~IlLDnmsp~~l~~av---~~~~~~~~~~~lEaSGGI~~~ni~~y-A~tGVD~i~tsa~~~a~p 271 (284)
T PRK06096 210 P--DVLQLDKFSPQQATEIA---QIAPSLAPHCTLALTGGINLTTLKNY-LDCGIRLFITSAPYYAAP 271 (284)
T ss_pred C--CEEEECCCCHHHHHHHH---HHHHHHCCCEEEEEECCCCHHHHHHH-HHCCCCEEEECCCCCCCH
T ss_conf 9--99996898999999999---99872179779999899999999999-980999998282106783
No 152
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=35.67 E-value=31 Score=14.80 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCC--CEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99999997499987811-1101466577799999997623686--408853458899999999976981899842
Q gi|255764508|r 133 VYNNKLLESGVERDDIK-LETQSLDTFQNAQFSSSMIKNMQGK--NIILVSSAYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~-~e~~s~nT~ena~~~~~il~~~~~~--~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
-++..|.+.|++ |+ ....+-+..|+=....+++.+.+.+ +...+|| ..-|...+++.|..+.--|+
T Consensus 644 nla~~L~~~gv~---IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~---~~ea~~~a~~iGyPvlvRPS 712 (1068)
T PRK12815 644 NLAKPLEEAGLP---ILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATS---EEEALAFAKRIGYPVLIRPS 712 (1068)
T ss_pred HHHHHHHHCCCE---EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC---HHHHHHHHHHCCCCEEECCC
T ss_conf 999999976994---9827868864241399999999973899999635456---67999999864997784244
No 153
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=35.63 E-value=31 Score=14.79 Aligned_cols=48 Identities=6% Similarity=0.026 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 577799999997623686408853458899999999976981899842
Q gi|255764508|r 157 TFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 157 T~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
..|.+...++.++..+.+.+++=|+...+.+|.-+++..|=..++.|-
T Consensus 522 a~~da~~~A~~l~~~g~~~vVIDT~~~~~~~a~~LA~~l~a~Y~~Lp~ 569 (584)
T PRK13406 522 AEEDALAAARALRAAGLPALVIDTSPRPQPQARALAEAMGARYLPLPR 569 (584)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCC
T ss_conf 899999999999976997899948988862699999983991897897
No 154
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=35.24 E-value=31 Score=14.75 Aligned_cols=11 Identities=27% Similarity=0.126 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 88999999999
Q gi|255764508|r 183 YHLKRSQLYFQ 193 (242)
Q Consensus 183 ~Hm~RA~~~f~ 193 (242)
-|+++=.+.-|
T Consensus 316 ~HLg~E~l~~k 326 (615)
T TIGR01816 316 DHLGEEVLEEK 326 (615)
T ss_pred CCCCHHHHHHH
T ss_conf 34885788652
No 155
>PRK05756 pyridoxamine kinase; Validated
Probab=35.11 E-value=31 Score=14.74 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEC---CCCCCCCCCCH--HHHHHHHHHHCCCCHHHHH---------CCHHHHHHHHHHH
Q ss_conf 99999999825200575338970---68888778882--7999999997499987811---------1101466577799
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIIS---GGDPQKHGLAE--SIVYNNKLLESGVERDDIK---------LETQSLDTFQNAQ 162 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~S---Gg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~---------~e~~s~nT~ena~ 162 (242)
+..-++..++.++++++..+++- |..+.+--.++ .+.+++.++ |.-+|+ +-...-+|.|++.
T Consensus 90 ~~~i~~~i~~~k~~np~~~~v~DPVmGD~g~g~yv~~~~~~~~~~~ll----p~AdiiTPN~fEle~LtG~~i~~~~~~~ 165 (287)
T PRK05756 90 GEAILGAVRRVKAANPQALYLCDPVMGHPEKGCIVAPGVAEFLRDRAL----PAADIITPNLFELEWLSGHPVETLEDAV 165 (287)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCEEECCCCCEECCHHHHHHHHHHCC----CCCCEEECCHHHHHHHCCCCCCCHHHHH
T ss_conf 999999999998529982799665250489855328769999998522----5357983888999997699659999999
Q ss_pred HHHHHHHHCCCCCEEEECCHHH
Q ss_conf 9999976236864088534588
Q gi|255764508|r 163 FSSSMIKNMQGKNIILVSSAYH 184 (242)
Q Consensus 163 ~~~~il~~~~~~~vilVTsa~H 184 (242)
...+.+.+.+. +.++|||..+
T Consensus 166 ~A~~~l~~~g~-~~VvvtS~~~ 186 (287)
T PRK05756 166 AAARALIARGP-KIVLVTSLAR 186 (287)
T ss_pred HHHHHHHHHCC-CEEEEECCCC
T ss_conf 99999997199-8899916877
No 156
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.10 E-value=31 Score=14.74 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=51.9
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-H-HHHHHHHHHHCCCCHHHHHC-CHHHHHHHHHHH-HHHHHHHHCCCC
Q ss_conf 9999998252005753389706888877888-2-79999999974999878111-101466577799-999997623686
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLA-E-SIVYNNKLLESGVERDDIKL-ETQSLDTFQNAQ-FSSSMIKNMQGK 174 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~-E-a~~m~~~l~~~Gv~~~~I~~-e~~s~nT~ena~-~~~~il~~~~~~ 174 (242)
.+-.|++.|.. +|.+-|.... ..+ | -+..++.+.+.|++...+.. ......+++.+. ...+++++.+..
T Consensus 100 a~~~L~~~Ghr-----~I~~ig~~~~--~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p 172 (265)
T cd01543 100 AAEHFLERGFR-----HFAFYGLPGA--RWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKP 172 (265)
T ss_pred HHHHHHHCCCC-----EEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999986997-----4999899988--0699999999999997799976341245446753999999999998359998
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 4088534588999999999769818
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
..++.+++..-.-++..++..|+++
T Consensus 173 tAi~~~nD~~A~g~l~~l~~~Gi~V 197 (265)
T cd01543 173 VGIFACTDARARQLLEACRRAGIAV 197 (265)
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 3999883699999999999832257
No 157
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.02 E-value=31 Score=14.73 Aligned_cols=80 Identities=19% Similarity=0.090 Sum_probs=42.4
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-C----CCCCCCCEEEECCCCCCC--------
Q ss_conf 645456875899962521377776555434682058999999999982-5----200575338970688887--------
Q gi|255764508|r 59 SPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKS-C----KQHSMHCTIIISGGDPQK-------- 125 (242)
Q Consensus 59 ~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~-~----~~~~~~~~ii~SGg~~~~-------- 125 (242)
..+-.+++|+++++|+.-. ..+. +-.+-+..-..+++. | +.-..++|+++.|..+..
T Consensus 193 ~~~AF~dad~ailvga~pr-------~~gm---er~dlL~~n~~IF~~qG~aln~~Ak~~vKVLVvG~nPaNtNalI~~~ 262 (452)
T cd05295 193 LDVAFKDAHVIVLLDDFLI-------KEGE---DLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIK 262 (452)
T ss_pred HHHHHCCCCEEEEECCCCC-------CCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 9998557988999588478-------8887---18899998779999999999854456866999678865168899997
Q ss_pred --CC-----------CCHHHHHHHHHHHCCCCHHHH
Q ss_conf --78-----------882799999999749998781
Q gi|255764508|r 126 --HG-----------LAESIVYNNKLLESGVERDDI 148 (242)
Q Consensus 126 --~~-----------~~Ea~~m~~~l~~~Gv~~~~I 148 (242)
.. ..|-++..+.+.+.||+.++|
T Consensus 263 ~Ap~Ip~~Nf~AmtrLD~NRA~aqlA~Klgv~~~~V 298 (452)
T cd05295 263 YAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGI 298 (452)
T ss_pred HCCCCCHHHEEEEHHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 589997576351027666689999998839987773
No 158
>pfam04122 CW_binding_2 Putative cell wall binding repeat 2. This repeat is found in multiple tandem copies in proteins including amidase enhancers and adhesins.
Probab=34.79 E-value=32 Score=14.70 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999825200575338970688887788827999999997499987811110146657779999999762368
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG 173 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~ 173 (242)
.+|...++.+.+..... .+.-++++| . ..+.|-....++.+.+.| |++-+.+ .. ..+++.++..+.
T Consensus 6 ~dRyeTa~~va~~~~~~-~~~v~la~G-~----~~~DaLsa~~lAa~~~~P---Illt~~~---~~--~~~~~~l~~~~~ 71 (90)
T pfam04122 6 KDRYETAAKIAKEFGGK-ADTVYVANG-E----DFADALSAAPLAAKNGAP---ILLTGDS---LP--SSTKDYLKSKKI 71 (90)
T ss_pred CCHHHHHHHHHHHHCCC-CCEEEEEEC-C----CCCCHHHHHHHHHHCCCE---EEEECCC---CC--HHHHHHHHHCCC
T ss_conf 68999999999985779-998999958-8----643168789999856981---9998999---99--999999997699
Q ss_pred CCEEEE
Q ss_conf 640885
Q gi|255764508|r 174 KNIILV 179 (242)
Q Consensus 174 ~~vilV 179 (242)
+++++|
T Consensus 72 ~~v~ii 77 (90)
T pfam04122 72 KKVYII 77 (90)
T ss_pred CEEEEE
T ss_conf 879998
No 159
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.76 E-value=32 Score=14.70 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=37.1
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-------ECCHHHH
Q ss_conf 533897068888778882799999999749998781111014665777999999976236864088-------5345889
Q gi|255764508|r 113 HCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL-------VSSAYHL 185 (242)
Q Consensus 113 ~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil-------VTsa~Hm 185 (242)
+..|+.|.| .+++|.+.||+.+.+.-..... .|+ .+.+++...+=++= .++.|++
T Consensus 26 Gf~i~AT~G------------Ta~~L~~~Gi~~~~v~k~~e~~---p~i---~d~i~~~~i~lVINt~~~~~~~~dg~~I 87 (110)
T cd01424 26 GFKLVATEG------------TAKYLQEAGIPVEVVNKVSEGR---PNI---VDLIKNGEIQLVINTPSGKRAIRDGFSI 87 (110)
T ss_pred CCEEEECCH------------HHHHHHHCCCCCEEEECCCCCC---CCH---HHHHHCCCEEEEEECCCCCCCCCCHHHH
T ss_conf 999998716------------9999986498640330056799---768---9999779358999778898657429999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|255764508|r 186 KRSQLYF 192 (242)
Q Consensus 186 ~RA~~~f 192 (242)
+|+...+
T Consensus 88 Rr~Av~~ 94 (110)
T cd01424 88 RRAALEY 94 (110)
T ss_pred HHHHHHC
T ss_conf 9999976
No 160
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=34.67 E-value=32 Score=14.69 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=6.2
Q ss_pred HHHHCCHHHHHHHHHHH
Q ss_conf 78111101466577799
Q gi|255764508|r 146 DDIKLETQSLDTFQNAQ 162 (242)
Q Consensus 146 ~~I~~e~~s~nT~ena~ 162 (242)
+..++=--+-.|.|.|.
T Consensus 195 e~~L~vGGGIRs~E~A~ 211 (242)
T TIGR01768 195 EVKLIVGGGIRSVEKAR 211 (242)
T ss_pred CEEEEEECCCCCHHHHH
T ss_conf 32578407647889999
No 161
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=34.40 E-value=32 Score=14.67 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCCCCCCCCHH-H-------HHHHHHHHCCCCHHHHHCCHHHHHHH--H
Q ss_conf 0589999999999825200575338970--688887788827-9-------99999997499987811110146657--7
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIIS--GGDPQKHGLAES-I-------VYNNKLLESGVERDDIKLETQSLDTF--Q 159 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~S--Gg~~~~~~~~Ea-~-------~m~~~l~~~Gv~~~~I~~e~~s~nT~--e 159 (242)
.+.+++...+++.+.- +++.++. |.........|. + .+.+++.+.||. +.+|+...... .
T Consensus 61 ~~~~~~~~~l~~a~~l-----G~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~---i~iE~~~~~~~~~~ 132 (201)
T pfam01261 61 AALEALKRAIELAAAL-----GAKVVVVHPGGALPGEDREEALDRLAESLNELAELAEEYGVK---LALENHPGTGVELG 132 (201)
T ss_pred HHHHHHHHHHHHHHHC-----CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEE---EEEEECCCCCCCCC
T ss_conf 9999999999999973-----995899826887889999999999999999999988755738---99998799886789
Q ss_pred HHHHHHHHHHHCCCCCEEEECCHHHHHHH
Q ss_conf 79999999762368640885345889999
Q gi|255764508|r 160 NAQFSSSMIKNMQGKNIILVSSAYHLKRS 188 (242)
Q Consensus 160 na~~~~~il~~~~~~~vilVTsa~Hm~RA 188 (242)
+.....+++++-+.+++-++=+.+||.++
T Consensus 133 ~~~~~~~l~~~v~~~~~~~~~D~~h~~~~ 161 (201)
T pfam01261 133 YFEEALRLIEEVDSPNVGLCLDTGHAFAA 161 (201)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHC
T ss_conf 99999999986499865511056899981
No 162
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase; InterPro: IPR006406 This family represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primarily proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is IPR006405 from INTERPRO. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase. ; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0019357 nicotinate nucleotide biosynthetic process.
Probab=34.39 E-value=32 Score=14.68 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 6408853458899999999976981899842
Q gi|255764508|r 174 KNIILVSSAYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 174 ~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
+.+++=||++|+ +++.|+++++--+
T Consensus 213 ks~~~GTSN~~l------A~k~gl~PiGT~A 237 (430)
T TIGR01514 213 KSWLLGTSNVHL------AKKLGLKPIGTVA 237 (430)
T ss_pred CEEEEECCHHHH------HHHCCCCCCCCCC
T ss_conf 357860617899------9781884106776
No 163
>pfam09873 DUF2100 Uncharacterized protein conserved in archaea (DUF2100). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=34.33 E-value=32 Score=14.66 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=46.9
Q ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC------
Q ss_conf 00575338970688887788827999999997499987811-11014665777999999976236864088534------
Q gi|255764508|r 109 QHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIK-LETQSLDTFQNAQFSSSMIKNMQGKNIILVSS------ 181 (242)
Q Consensus 109 ~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~-~e~~s~nT~ena~~~~~il~~~~~~~vilVTs------ 181 (242)
...++++|+.|||. -+.+-|+.. .--+|+.... +|.+-.-+.+|.. +++.+.++.++++|-.
T Consensus 125 ~~~p~lnIv~TeG~------L~~EDmk~I--nPkiPEkal~GieKk~ei~r~~ie---~~I~k~~p~kivvVv~e~D~~d 193 (215)
T pfam09873 125 EIVPDLNIVSTEGP------LEIEDMRII--NPKIPEKALEGIEKKCEIARNQIE---RVIRKINPSKIVVVVEEGDRAD 193 (215)
T ss_pred CCCCCCCEEECCCC------CCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHCCCCEEEEEECCCCCHH
T ss_conf 34986435634887------778999873--878888999889999999999999---9998469651799972798332
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 58899999999976
Q gi|255764508|r 182 AYHLKRSQLYFQHF 195 (242)
Q Consensus 182 a~Hm~RA~~~f~~~ 195 (242)
-.--.||.-+..+.
T Consensus 194 ELl~~rAkeLy~ae 207 (215)
T pfam09873 194 ELLYKRAKELYNAE 207 (215)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999970842
No 164
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=34.23 E-value=30 Score=14.84 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=20.8
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 3897068888778882799999999749998781111014665777999999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS 166 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~ 166 (242)
.++++||.|- +=--.|-+.+.+.|-+. ++.+-. +..+.+.+.+..+
T Consensus 111 ~~liAgG~GI----tP~~s~l~~l~~~~~~~-~~~l~~-g~r~~~d~~~~~e 156 (236)
T cd06210 111 RWFVAGGTGL----APLLSMLRRMAEWGEPQ-EARLFF-GVNTEAELFYLDE 156 (236)
T ss_pred EEEEECCCCC----CHHHHHHHHHHHCCCCC-EEEEEE-ECCCHHHHHHHHH
T ss_conf 8999468652----07999999999729997-289997-4287777899999
No 165
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=34.15 E-value=32 Score=14.64 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=35.5
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 645456875899962521377776555434682058999999999982520057533897068888
Q gi|255764508|r 59 SPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQ 124 (242)
Q Consensus 59 ~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~ 124 (242)
.....++||+|||=.||.-.++. .+|.+-+.+.++-=+++ +.+|||+|=.+.
T Consensus 30 ~~~~~e~AD~vIvNTC~FI~~A~---------~ES~~~i~e~~d~K~~y-----~~KviV~GCL~~ 81 (475)
T TIGR01125 30 VTPNYEDADVVIVNTCGFIEDAK---------QESIDTIGELLDAKDEY-----GKKVIVTGCLVE 81 (475)
T ss_pred EECCCCCCCEEEECCCCCHHHHH---------HHHHHHHHHHHHHHHHC-----CCEEEEECCCCC
T ss_conf 30684547778980442304789---------99999999998758652-----975999655665
No 166
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.83 E-value=33 Score=14.61 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99999999825200575338970688887788827999999997499987811110146657779999999762368640
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
+..-+++.|++..+ -+|++||.. -..|.+.||-++=+..-+.-.=+ .+.+++...+++
T Consensus 236 L~Kql~lLK~y~~k----~~IFcadsa-----------l~~L~k~GIkPDyVc~ld~~di~-------~e~~~n~~~k~i 293 (594)
T COG2604 236 LEKQLPLLKKYQDK----ATIFCADSA-----------LPILAKHGIKPDYVCSLDPDDIA-------YEFFQNDFNKDI 293 (594)
T ss_pred HHHCCHHHHHHCCC----EEEEECCCC-----------CHHHHHCCCCCCEEEEECCHHHH-------HHHHHCCCCCCC
T ss_conf 44436888860555----399988975-----------45798679997769985641889-------999843467786
Q ss_pred EEECCHHHHHHHHHHHH
Q ss_conf 88534588999999999
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~ 193 (242)
.++=+.+--||+....+
T Consensus 294 p~~~~~~~h~~vv~~~k 310 (594)
T COG2604 294 PLILASITHPRVVEYLK 310 (594)
T ss_pred CEEEECCCCHHHHHHHC
T ss_conf 05543116699998633
No 167
>PRK13289 nitric oxide dioxygenase; Provisional
Probab=33.71 E-value=31 Score=14.78 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=20.5
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHH
Q ss_conf 89706888877888279999999974999878111101466577
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQ 159 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~e 159 (242)
++++||.| ++=--.|-+.+.+.|- ...|.+-..++|..+
T Consensus 265 VLIAgGiG----ITPmlSML~~l~~~~~-~r~V~liygaR~~~~ 303 (399)
T PRK13289 265 VLISGGVG----ITPMLSMLETLAKQQP-TRPVHFIHAAENGDV 303 (399)
T ss_pred EEEECCCC----CCHHHHHHHHHHHHCC-CCCEEEEEECCCHHH
T ss_conf 99953767----3359999999997099-985799995698798
No 168
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=33.65 E-value=33 Score=14.59 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH-HHHHHHHHHCCCCHHHHHCCHH
Q ss_conf 9999999999825200575338970688887788827-9999999974999878111101
Q gi|255764508|r 95 SRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES-IVYNNKLLESGVERDDIKLETQ 153 (242)
Q Consensus 95 ~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea-~~m~~~l~~~Gv~~~~I~~e~~ 153 (242)
..+..|+.+.|.-+. |+|+.||... +|+| +..+.+.+..||| +.|.+
T Consensus 217 ~eL~~A~~lik~ak~-----PlIvaGGGv~---YS~A~~~L~af~E~~~iP----v~ETQ 264 (617)
T COG3962 217 RELADAAALIKSAKK-----PLIVAGGGVL---YSGAREALRAFAETHGIP----VVETQ 264 (617)
T ss_pred HHHHHHHHHHHHCCC-----CEEEECCCEE---ECHHHHHHHHHHHHCCCC----EEECC
T ss_conf 999999999983579-----7799668654---430799999999864996----57635
No 169
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.26 E-value=33 Score=14.55 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCCCEEEEECC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 68758999625---213777765554346820589999999999825200575338970688887788827999999997
Q gi|255764508|r 64 KDGNIIVLLGN---GTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 64 ~~~d~IVVLGg---G~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
..+|+||+=|. |.... ..+......+..++..+. .+.+..+.|+|..||...+.+..-+-++..-+.+
T Consensus 122 ~GaDavIaEG~EaGGHiG~--------~~Tm~Lvpqvvdav~~~~-~~~~~~~IPViaAGGI~DGRg~aaa~aLgA~~a~ 192 (320)
T cd04743 122 NGARKFIFEGRECGGHVGP--------RSSFVLWESAIDALLAAN-GPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAE 192 (320)
T ss_pred CCCCEEEEECCCCCCCCCC--------CCHHHHHHHHHHHHHCCC-CCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHH
T ss_conf 4999999957457677675--------301340598988986035-6655678748997674561899999983884223
Q ss_pred CCCCHHHHHCCHHHHHHHHH-------HHHHHHHHHHCCCCCEEEECCHHHHHHH
Q ss_conf 49998781111014665777-------9999999762368640885345889999
Q gi|255764508|r 141 SGVERDDIKLETQSLDTFQN-------AQFSSSMIKNMQGKNIILVSSAYHLKRS 188 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s~nT~en-------a~~~~~il~~~~~~~vilVTsa~Hm~RA 188 (242)
.|+. --+.+.++=.-|.|- -.|=.++++.+ ++..++|..=|--|.
T Consensus 193 ~g~~-~GVqmGTrfl~t~E~v~~gai~~~~k~~~~~a~--~~~~~~tg~Gh~~R~ 244 (320)
T cd04743 193 RGAK-VGVLMGTAYLFTEEAVSAGAILPTFQDQAIAAT--RTALLETGPGHATRC 244 (320)
T ss_pred CCCC-CEEEEECHHHCCHHHHCCCHHHHHHHHHHHHCC--CCCEEEECCCCCEEE
T ss_conf 1562-227860441101554223314289999997256--753586559963255
No 170
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=33.25 E-value=33 Score=14.55 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHCCHHHHHHHHHHHHHHHH------HHHCCCCCEEEECCHHHHH---HHHHHHHHCCCEEEE
Q ss_conf 11110146657779999999------7623686408853458899---999999976981899
Q gi|255764508|r 148 IKLETQSLDTFQNAQFSSSM------IKNMQGKNIILVSSAYHLK---RSQLYFQHFGINTKA 201 (242)
Q Consensus 148 I~~e~~s~nT~ena~~~~~i------l~~~~~~~vilVTsa~Hm~---RA~~~f~~~gi~~~p 201 (242)
|..|-+|.=+.......++. .+...++++++||.--|-+ |+..++++.|+.++|
T Consensus 165 vlVEItS~ikrgDl~~i~rk~elYer~~gvki~~vivitpFihdr~p~~~kAmAe~mGIeii~ 227 (231)
T COG5493 165 VLVEITSAIKRGDLPVIRRKKELYERAKGVKINKVIVITPFIHDRYPDRVKAMAERMGIEIIP 227 (231)
T ss_pred EEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEECC
T ss_conf 999736334135629999989999985187632599971432454768999999984926218
No 171
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=32.28 E-value=35 Score=14.44 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC---HHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 11014665777999999976236864088534---5889999999997698189984266
Q gi|255764508|r 150 LETQSLDTFQNAQFSSSMIKNMQGKNIILVSS---AYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 150 ~e~~s~nT~ena~~~~~il~~~~~~~vilVTs---a~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+++.+.|-.+.....+++++.++.+.-+|+-| ..|+.++. +.|.+.+.+|.+-
T Consensus 135 ~~d~G~Dg~~~i~~i~~~~~~~~~~tkILaASiR~~~~v~~a~----~~Gad~vTipp~v 190 (220)
T PRK12655 135 VDAQGGDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCL----LAGCQSITLPLDV 190 (220)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH----HCCCCEEEECHHH
T ss_conf 7555898489999999999975999689998389999999999----8699999819999
No 172
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=31.80 E-value=35 Score=14.41 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=21.1
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 389706888877888279999999974999878111101466577799999997
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMI 168 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il 168 (242)
.++++||.| ++=-..|-+.+...|-+ +.+-.-+ .|.++..+..++-
T Consensus 101 ~vliAgG~G----ItP~~sml~~l~~~~~~---~~L~y~~-r~~~d~~f~~eL~ 146 (211)
T cd06185 101 HLLIAGGIG----ITPILSMARALAARGAD---FELHYAG-RSREDAAFLDELA 146 (211)
T ss_pred EEEEECCCC----CCHHHHHHHHHHHCCCC---EEEEEEE-CCHHHHHHHHHHH
T ss_conf 799963776----37599999999976997---9999983-8879925799997
No 173
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=31.63 E-value=36 Score=14.38 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=19.6
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 897068888778882799999999749998781111014665777999999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS 166 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~ 166 (242)
++++||.|-.. --.|-+.+.+.+- ...|.+-..+++. +.+.+..+
T Consensus 107 vliAgG~GitP----~~sml~~~~~~~~-~~~v~l~~g~r~~-~d~~~~~e 151 (232)
T cd06212 107 VLIGGGSGMAP----LLSLLRDMAASGS-DRPVRFFYGARTA-RDLFYLEE 151 (232)
T ss_pred EEEECCCCCCH----HHHHHHHHHHCCC-CCEEEEEEECCCH-HHHHHHHH
T ss_conf 99956877025----9999999997499-9748999844887-88788999
No 174
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=31.53 E-value=36 Score=14.36 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=20.8
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 897068888778882799999999749998781111014665777999999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS 166 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~ 166 (242)
++++||.| ++=--.|.+.+.+.+-+ .++.+-..++ +.+++.+..+
T Consensus 102 vliAgG~G----ItP~~s~l~~~~~~~~~-~~v~l~~g~r-~~~d~~~~~e 146 (224)
T cd06187 102 LCIAGGTG----LAPLRAIVEDALRRGEP-RPVHLFFGAR-TERDLYDLEG 146 (224)
T ss_pred EEEECCCC----CCHHHHHHHHHHHCCCC-CEEEEEEECC-CHHHHHHHHH
T ss_conf 99965756----23599999999975999-8289997158-8799888999
No 175
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=31.36 E-value=36 Score=14.35 Aligned_cols=69 Identities=7% Similarity=0.058 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE--EECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 8279999999974999878111101466577799999997623686408--85345889999999997698189
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII--LVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi--lVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
...++.+.++..+|+|- +....+....++....++.+++.+.+.++ =|-|.+|..|-...+++.|+++.
T Consensus 45 ~~~~l~~~qA~algiPl---~~~~~~~~~e~~~~~L~~~l~~~~i~~vv~GdI~s~~qr~~~e~~c~~lgl~~~ 115 (219)
T pfam01902 45 PNLHLTKLLAEALGIPI---IKLYTKGEEEKEVEDLAGFLESLDVDALVAGAIYSEYQKSRIESVCRELGLKPF 115 (219)
T ss_pred CCHHHHHHHHHHCCCCE---EEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 78899999999759968---999679861799999999998759869999860368899999999997298897
No 176
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=31.29 E-value=36 Score=14.34 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 54446454568758999625213777765554346820589999999999825200575338970688887788827999
Q gi|255764508|r 55 RPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVY 134 (242)
Q Consensus 55 ~~~~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m 134 (242)
-|.-.|.+.++..-+++.|||+-..+.. -+.+ .|.++| .. -+.+.|+...+.-+-|-+ |
T Consensus 88 GPLG~Ps~Ie~~G~Vv~VgGGvGiApv~-------------Piak--aLke~G----N~-V~~IiGaR~kdlvilede-~ 146 (993)
T PRK12775 88 GPLGLPQHIDKAGHVVFVGGGLGVAPIF-------------PQLR--AFKEAG----AR-TTAIMGFRNKDLVFWEDK-F 146 (993)
T ss_pred CCCCCCCCCCCCCEEEEEECCEEHHHHH-------------HHHH--HHHHCC----CE-EEEEEECCCCCCEEHHHH-H
T ss_conf 6799964102577399990877430238-------------9999--999859----90-899984266002334999-9
Q ss_pred HHHHHHCCCCHHHHHCCHHHHHHHHHHHH-HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 99999749998781111014665777999-99997623686408853458899999999976981899
Q gi|255764508|r 135 NNKLLESGVERDDIKLETQSLDTFQNAQF-SSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e~~s~nT~ena~~-~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p 201 (242)
+++.-+ =-|..++-|.--...... .++++++.+.+.++.|-..-.|+.....-+..|++++.
T Consensus 147 ~~~sde-----l~i~TDDGS~G~kG~VTd~L~elle~~k~D~V~aIGP~~MMK~vs~~Tk~ygIpT~V 209 (993)
T PRK12775 147 REYADD-----LIICTDDGSYGEPGFVTAALKRVCEKQKPDKVVAIGPMPMMHACVETTRPFGVKTMV 209 (993)
T ss_pred HHHCCC-----EEEECCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEE
T ss_conf 864683-----899768999875642069999998668988899989889999999872525997589
No 177
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=31.17 E-value=36 Score=14.33 Aligned_cols=18 Identities=11% Similarity=-0.033 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 457889899999999999
Q gi|255764508|r 216 LSANFYLTELALKEYIGI 233 (242)
Q Consensus 216 ~~~~l~~~~~~~~E~ig~ 233 (242)
+.+-.+..-.+++|-+..
T Consensus 355 T~edId~li~aL~~iv~~ 372 (379)
T TIGR03402 355 TEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 178
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=30.80 E-value=37 Score=14.29 Aligned_cols=84 Identities=21% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCEEEECCCCCCCCCCCH---HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH--
Q ss_conf 533897068888778882---799999999749998781111014665777999999976236864088534588999--
Q gi|255764508|r 113 HCTIIISGGDPQKHGLAE---SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKR-- 187 (242)
Q Consensus 113 ~~~ii~SGg~~~~~~~~E---a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~R-- 187 (242)
++.+|.||--++ .++| ++.|++.+...-=-=|=|++|.-+-++.=-|. ++.+ ..+..+|||.|....|
T Consensus 98 nL~vi~sG~vPP--NPt~LL~s~~F~~l~e~~~~~fD~iiiDTPPig~V~DAa----i~a~-~~d~~~LV~~A~~~~k~~ 170 (207)
T TIGR01007 98 NLDVITSGPVPP--NPTELLQSSNFKTLIETLRKYFDYIIIDTPPIGTVIDAA----IIAR-AVDASILVTDAGKIKKRE 170 (207)
T ss_pred CCEEECCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH----HHHH-HHCCEEEEEECCCCCHHH
T ss_conf 872751788787--754788889999999998716888999518866678899----9998-729779887225326467
Q ss_pred ---HHHHHHHCCCEEEEEE
Q ss_conf ---9999997698189984
Q gi|255764508|r 188 ---SQLYFQHFGINTKASC 203 (242)
Q Consensus 188 ---A~~~f~~~gi~~~p~~ 203 (242)
|+...++.|=++-++-
T Consensus 171 v~KAK~~LEq~G~~~LGvv 189 (207)
T TIGR01007 171 VKKAKEQLEQAGSKFLGVV 189 (207)
T ss_pred HHHHHHHHHHHCCCEEEEE
T ss_conf 8999999986178411588
No 179
>KOG3814 consensus
Probab=30.77 E-value=37 Score=14.28 Aligned_cols=20 Identities=15% Similarity=0.522 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 39999999999998301148
Q gi|255764508|r 2 LLSWIFLIVSYWHLLCQSIR 21 (242)
Q Consensus 2 ~l~li~lii~~~~~~~~~~~ 21 (242)
-+-+++|++..|.++.|+..
T Consensus 162 A~kll~L~ig~walf~Rk~~ 181 (531)
T KOG3814 162 AFKLLILLIGIWALFFRKAM 181 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999899823210
No 180
>KOG0430 consensus
Probab=30.75 E-value=12 Score=17.36 Aligned_cols=64 Identities=13% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHH--HHHCC----CCCEEEECCHHHHHHHHH-------HHHHCCCEE
Q ss_conf 99999997499987811110146657779999999--76236----864088534588999999-------999769818
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSM--IKNMQ----GKNIILVSSAYHLKRSQL-------YFQHFGINT 199 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~i--l~~~~----~~~vilVTsa~Hm~RA~~-------~f~~~gi~~ 199 (242)
+|.+.+.+.|.+.+.|..-| +|++...+..- +.+.. | .-.+++|.||-+|... .++|.|+-.
T Consensus 886 iie~VA~~~g~d~~eVR~~N----~y~eg~~~~~~~~~~~~~l~~~w-~~~~~sS~y~~Rk~ev~~FN~~N~WrKRGi~~ 960 (1257)
T KOG0430 886 IIERIAFELGKDPEEVRKIN----FYVEGSLTYYHGELQHCTLPQLW-PECLVSSKFEKRKSEIEEFNKENRWKKRGLAM 960 (1257)
T ss_pred HHHHHHHHHCCCHHHHHHHH----HHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCEECCCCEE
T ss_conf 99999999698999986521----34303522156773547489999-99987555888999999850305001156157
Q ss_pred EE
Q ss_conf 99
Q gi|255764508|r 200 KA 201 (242)
Q Consensus 200 ~p 201 (242)
+|
T Consensus 961 vp 962 (1257)
T KOG0430 961 VP 962 (1257)
T ss_pred EE
T ss_conf 33
No 181
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=30.51 E-value=37 Score=14.25 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=44.8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEE----------EECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 11101466577799999997623686408----------85345889999999997698189984266
Q gi|255764508|r 149 KLETQSLDTFQNAQFSSSMIKNMQGKNII----------LVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 149 ~~e~~s~nT~ena~~~~~il~~~~~~~vi----------lVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+--+.+--|.|+|+.++++.++....+++ |--+.+-..+|-...-+.|+.|-||-+|.
T Consensus 141 LPNTAGc~ta~eAvr~a~lARe~~~t~~iKLEVi~D~~tL~Pd~~etl~Aae~Lv~eGF~VlpY~~dD 208 (327)
T PRK11840 141 LPNTAGCFTAEDAVRTLRLAREAGGWDLVKLEVLGDQKTLYPDMVETLKAAEVLVKEGFQVMVYCSDD 208 (327)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98565778899999999999985599858999807976679985899999999997898898871698
No 182
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=30.46 E-value=37 Score=14.25 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEC---CCCCCCCCCCH--HHHHHHHHHHC--CC----CHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999825200575338970---68888778882--79999999974--99----9878111101466577799999
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIIS---GGDPQKHGLAE--SIVYNNKLLES--GV----ERDDIKLETQSLDTFQNAQFSS 165 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~S---Gg~~~~~~~~E--a~~m~~~l~~~--Gv----~~~~I~~e~~s~nT~ena~~~~ 165 (242)
+..-.+..++.++++++.++++- |..+.....+| .+.|++.+..+ -+ ++-.++. ...-+|.+++....
T Consensus 87 i~~v~~~i~~~k~~~~~~~~v~DPVmgD~g~~y~~~~~~~~~~r~~L~p~AdviTPN~~Ea~~Lt-g~~i~~~~~~~~aa 165 (254)
T cd01173 87 VEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLT-GKKINDLEDAKAAA 165 (254)
T ss_pred HHHHHHHHHHHHHCCCCCCEEECCEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHH-CCCCCCHHHHHHHH
T ss_conf 99999999998624898738965158529988437889999999973131007158989999982-99979999999999
Q ss_pred HHHHHCCCCCEEEECCHH
Q ss_conf 997623686408853458
Q gi|255764508|r 166 SMIKNMQGKNIILVSSAY 183 (242)
Q Consensus 166 ~il~~~~~~~vilVTsa~ 183 (242)
+.+.+.+. +.++|||.-
T Consensus 166 ~~L~~~g~-~~Vvitg~~ 182 (254)
T cd01173 166 RALHAKGP-KTVVVTSVE 182 (254)
T ss_pred HHHHHHCC-CEEEECCCC
T ss_conf 99997089-999999865
No 183
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=30.06 E-value=38 Score=14.20 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=18.4
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 897068888778882799999999749998781111014665777999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQF 163 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~ 163 (242)
++++||.|-. =--.|-+.+...+- ..+|.+-.-++ |.+...+
T Consensus 101 vlIAgG~Git----P~~s~l~~~~~~~~-~~~i~l~~g~r-~~~~l~~ 142 (222)
T cd06194 101 LLVGAGTGLA----PLWGIARAALRQGH-QGEIRLVHGAR-DPDDLYL 142 (222)
T ss_pred EEEECCCCCC----CHHHHHHHHHHHCC-CCEEEEEEEEC-CHHHHHH
T ss_conf 9997476755----09999999998399-97599999839-9899430
No 184
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=30.00 E-value=38 Score=14.20 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=33.4
Q ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9976236864088534588999999999769818998426
Q gi|255764508|r 166 SMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 166 ~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
++..+...+.++|||++--+-.+....+..|..++-+..+
T Consensus 93 ~~a~~~~~D~~vLvSgD~Df~p~v~~lr~~Gk~V~v~~~~ 132 (149)
T cd06167 93 ELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9961389998999957772799999999879999999748
No 185
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=29.81 E-value=30 Score=14.88 Aligned_cols=14 Identities=0% Similarity=-0.249 Sum_probs=5.3
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999997623686
Q gi|255764508|r 161 AQFSSSMIKNMQGK 174 (242)
Q Consensus 161 a~~~~~il~~~~~~ 174 (242)
+...+.-+++++++
T Consensus 488 ~~~iA~~f~~~kiD 501 (777)
T TIGR02478 488 LGEIAYKFQKHKID 501 (777)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 89999999860988
No 186
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=29.78 E-value=38 Score=14.17 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE----------EEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999997499987811110146657779999999762368640----------88534588999999999769818998
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI----------ILVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v----------ilVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
..-+++-..++ .++--+.+--|.|+|+.++++.++-...++ .|--+.+-..+|-...-+.|+.|-||
T Consensus 52 ~~l~~i~~~~~---~iLPNTAGc~tA~EAVr~A~laRE~~~t~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlpY 128 (246)
T pfam05690 52 NFLDLLDWLGI---TLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDSKTLLPDPIETLKAAEILVKEGFTVLPY 128 (246)
T ss_pred HHHHHHHHCCC---EECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 58886413386---677763011889999999999999709974899982698877988789999999999789989886
Q ss_pred ECCC
Q ss_conf 4266
Q gi|255764508|r 203 CSDY 206 (242)
Q Consensus 203 ~~d~ 206 (242)
-+|.
T Consensus 129 ~~~D 132 (246)
T pfam05690 129 TTDD 132 (246)
T ss_pred CCCC
T ss_conf 1799
No 187
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=29.39 E-value=39 Score=14.13 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=20.6
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 389706888877888279999999974999878111101466577799999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS 165 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~ 165 (242)
-+++.||.|- +=-..|-+.+.+.+-+...|.+-.-++ |.+...+..
T Consensus 153 lvlIAgGtGI----aPl~Sml~~~l~~~~~~r~v~l~ygaR-~~~dl~~~~ 198 (283)
T cd06188 153 MVFIGGGAGM----APLRSHIFHLLKTLKSKRKISFWYGAR-SLKELFYQE 198 (283)
T ss_pred EEEEEECCCC----CHHHHHHHHHHHHCCCCCCEEEEEEEC-CHHHHHHHH
T ss_conf 2899835674----469999999998269997289999708-889974499
No 188
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.20 E-value=39 Score=14.11 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE----------EECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9999999974999878111101466577799999997623686408----------853458899999999976981899
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII----------LVSSAYHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi----------lVTsa~Hm~RA~~~f~~~gi~~~p 201 (242)
+..-+++-..++ .++--+.+--|.|+|+.++++.++-...+++ |--+.+-..+|-...-+.|+.|-|
T Consensus 52 ~~~l~~i~~~~~---~~LPNTAGc~ta~EAvr~A~laRE~~~t~~IKLEVi~D~~~LlPD~~eTl~Aae~Lv~~GF~Vlp 128 (248)
T cd04728 52 ESFLDLLDKSGY---TLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLP 128 (248)
T ss_pred HHHHHHHHHCCC---EECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 268987523386---68765401167999999999999984898699998179767798868999999999988998978
Q ss_pred EECCC
Q ss_conf 84266
Q gi|255764508|r 202 SCSDY 206 (242)
Q Consensus 202 ~~~d~ 206 (242)
|-+|.
T Consensus 129 Y~~~D 133 (248)
T cd04728 129 YCTDD 133 (248)
T ss_pred ECCCC
T ss_conf 67889
No 189
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=28.79 E-value=40 Score=14.07 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHC---C-----CCCEEEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 1466577799999997623---6-----864088534588999999999769818998
Q gi|255764508|r 153 QSLDTFQNAQFSSSMIKNM---Q-----GKNIILVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 153 ~s~nT~ena~~~~~il~~~---~-----~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
...|..++|...++.+... + .+=.+|+-+..|.+.-...+++.||...-.
T Consensus 322 ~~~~~~~Ea~~ia~~I~~l~~~~~~~~~~DiAIL~R~~~~~~~l~~~L~~~gIP~~~~ 379 (494)
T pfam00580 322 EAETEQEEAEFIADEIKALHKSGAAIPFGDIAVLVRSNSQSRAIEEALLKAGIPYKIL 379 (494)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf 3799999999999999999877999885656899825231899999999779998998
No 190
>PRK03612 spermidine synthase; Provisional
Probab=28.74 E-value=40 Score=14.06 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHH----HCCCEEEEEECCC
Q ss_conf 34588999999999----7698189984266
Q gi|255764508|r 180 SSAYHLKRSQLYFQ----HFGINTKASCSDY 206 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~----~~gi~~~p~~~d~ 206 (242)
||+||-|++.++-. ..|+.+.||.++-
T Consensus 412 ~Sp~~~~~~f~~i~~T~~~~~~~~~~y~~~v 442 (516)
T PRK03612 412 TSPYFAPKAFWSIEATLEAAGFATTPYHVNV 442 (516)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 8975522034689999998388041324558
No 191
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=28.61 E-value=40 Score=14.05 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=26.8
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 999999974999878111101466577799999997623686408853458899999999976981899842
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
..+..+...||+++.|++.+-|..-.+-+. +.+-+.|.+.++.....|-|.+ ..++..|.++..+|.
T Consensus 62 Lr~alA~~~gv~~e~I~vGnGSdElI~~l~---raf~~pg~d~vl~~~PtF~~Y~--~~a~~~g~~~~~vpl 128 (355)
T PRK01688 62 VIENYAQYAGVKPEQVLVSRGADEGIELLI---RAFCEPGKDAILYCPPTYGMYS--VSAETIGVECRTVPT 128 (355)
T ss_pred HHHHHHHHHCCCHHHEEEECCHHHHHHHHH---HHHHCCCCCEEEECCCCHHHHH--HHHHHCCCEEEEECC
T ss_conf 999999986858778998168999999999---9985589974997788768999--999867957999527
No 192
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=28.41 E-value=40 Score=14.02 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 999999999825200575338970688887788827999999997499987811110146
Q gi|255764508|r 96 RIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 96 Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
-..+-++|.+++ +||+.++|. +..|-..+.+-+.+.|+ .+|++|+.++
T Consensus 189 N~~~m~~LA~~~-----~~Pl~V~a~-----~L~~L~~l~~~~~~~Gi--kdlVLDpg~~ 236 (454)
T PRK04165 189 NWKEMAELAKEY-----NCPLVVSAP-----NLEELKSLVKKLQAAGI--KDIVLDPGTE 236 (454)
T ss_pred HHHHHHHHHHHC-----CCCEEEECC-----CHHHHHHHHHHHHHCCC--CCEEECCCCC
T ss_conf 899999999874-----984799779-----98999999999997698--5278889974
No 193
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.35 E-value=40 Score=14.02 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEE-EEEEC--CCCCCCCCCCCCHHHHHH
Q ss_conf 781111014665777999999976236864088534588999999999769818-99842--664431113754578898
Q gi|255764508|r 146 DDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINT-KASCS--DYLNAYYSIIPLSANFYL 222 (242)
Q Consensus 146 ~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~-~p~~~--d~~~~~~~~~p~~~~l~~ 222 (242)
+-++.-..|-+|.|- ....+..+++|. +++.||+..+-+=| +...+.. +|.++ |....+.+..|.+.-+..
T Consensus 74 Dv~I~iS~SGeT~e~-~~~~~~aK~~ga-~ii~IT~~~~S~La----k~aD~~l~ip~~~~~~~~~~~~~~~p~~s~~e~ 147 (179)
T TIGR03127 74 DLLIAISGSGETESL-VTVAKKAKEIGA-TVAAITTNPESTLG----KLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQ 147 (179)
T ss_pred CEEEEECCCCCCHHH-HHHHHHHHHCCC-EEEEEECCCCCHHH----HHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 999998199996899-999999998799-29999798989779----949999990686545777885666866749999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999864
Q gi|255764508|r 223 TELALKEYIGILIAYYRG 240 (242)
Q Consensus 223 ~~~~~~E~ig~l~~~~~g 240 (242)
...++-+.+.+.....+|
T Consensus 148 ~~l~~~Dal~~~l~~~~~ 165 (179)
T TIGR03127 148 SLLLFLDAVILKLMKKKG 165 (179)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999819
No 194
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=28.04 E-value=41 Score=13.98 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH---------HHHHHHHHHHHHCCCEEEEE
Q ss_conf 999999997499987811110146657779999999762368640885345---------88999999999769818998
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA---------YHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa---------~Hm~RA~~~f~~~gi~~~p~ 202 (242)
...+..|-.+||... .+-...+|-.+...+..+.+++ .+++.+||+| |++-| .+++.|+.|+|.
T Consensus 40 R~t~~LL~~~~I~~~--~is~h~hne~~~~~~li~~l~~--g~~valVSDAG~P~ISDPG~~LV~---~a~~~gi~V~~l 112 (275)
T COG0313 40 RVTRKLLSHLGIKTP--LISYHEHNEKEKLPKLIPLLKK--GKSVALVSDAGTPLISDPGYELVR---AAREAGIRVVPL 112 (275)
T ss_pred HHHHHHHHHHCCCCC--EECCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCHHHHH---HHHHCCCCEEEC
T ss_conf 779999997399983--4503478677879999999866--984899805899766685099999---999869918966
Q ss_pred ECCC-----------CC---CCCCCCCCHHHH
Q ss_conf 4266-----------44---311137545788
Q gi|255764508|r 203 CSDY-----------LN---AYYSIIPLSANF 220 (242)
Q Consensus 203 ~~d~-----------~~---~~~~~~p~~~~l 220 (242)
|-.- .+ ...+|+|....=
T Consensus 113 PG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~ 144 (275)
T COG0313 113 PGPSALITALSASGLPSQRFLFEGFLPRKSKE 144 (275)
T ss_pred CCCCHHHHHHHHCCCCCCCEEEECCCCCCCCH
T ss_conf 88349999999758999972684117998327
No 195
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=28.00 E-value=33 Score=14.61 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999825200575338970688887788827999999997499987811110146657779999999762368
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG 173 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~ 173 (242)
.+-+.+|+...+ .+.++.++++-|. | ++.+.+++...++|+...-.++...+.+.. .+++..
T Consensus 203 ~~~li~A~~~l~---~~~p~~~l~ivG~-G-----p~~~~l~~~~~~l~l~~~V~f~G~~~~~~v------~~~l~~--- 264 (367)
T cd05844 203 PLLLLEAFARLA---RRVPEVRLVIIGD-G-----PLLAALEALARALGLGGRVTFLGAQPHAEV------RELMRR--- 264 (367)
T ss_pred HHHHHHHHHHHH---HHCCCEEEEEEEC-C-----CCHHHHHHHHHHCCCCCCEEECCCCCCHHH------HHHHHH---
T ss_conf 699999999979---6686979999988-8-----378999999997098763787788981889------999985---
Q ss_pred CCEEEECCH-------HHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 640885345-------8899999999976981899842
Q gi|255764508|r 174 KNIILVSSA-------YHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 174 ~~vilVTsa-------~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
..+.+..|- --++-+...+...|..|+....
T Consensus 265 adv~v~PS~~~~~g~~Eg~~~~~lEAmA~G~PVVat~~ 302 (367)
T cd05844 265 ARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRH 302 (367)
T ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEECC
T ss_conf 78799600203778856763799999984997899279
No 196
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=27.99 E-value=41 Score=13.98 Aligned_cols=61 Identities=8% Similarity=0.155 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 827999999997499987811110146657779999999762368640885345889999999997
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQH 194 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~ 194 (242)
.+|.-+-....+.||+.++|++--- .|||-.+.. +.|++.|++ .-+|==|.+.-|..+++.
T Consensus 114 ~kAr~Li~lYe~~GI~~dRilIKIa--sTWEGI~Aa-~~Le~eGI~--cNlTLlFs~aQA~acAeA 174 (391)
T PRK12309 114 AKARKLIGLYEDAGISRDRVLIKIA--STWEGIKAA-EVLEKEGIH--CNLTLLFGFHQAIACAEA 174 (391)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECC--CCHHHHHHH-HHHHHCCCE--EEEEEECCHHHHHHHHHC
T ss_conf 9999999999972998343478547--878999999-999865960--436666479999999974
No 197
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=27.41 E-value=42 Score=13.91 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=52.9
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-H-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCC
Q ss_conf 9999998252005753389706888877888-2-79999999974999878111101466577799-9999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLA-E-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~-E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~ 175 (242)
.+-.|+++|.. +|.+-|+...+.... | -+..++.+.+.|++...+...+ .+.|.+. ..++++++.+ .+
T Consensus 105 a~~~L~~~Ghr-----~I~~i~~~~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~---~~~~~~~~~~~~ll~~~~-~~ 175 (259)
T cd01542 105 LGEYLAQQGHK-----NIAYLGVSESDIAVGILRKQGYLDALKEHGICPPNIVETD---FSYESAYEAAQELLEPQP-PD 175 (259)
T ss_pred HHHHHHHHCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC---CCHHHHHHHHHHHHHCCC-CC
T ss_conf 99999982898-----5999955865606799999999999997699963599657---877789999999974579-98
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++.+|+....-++..+++.|++
T Consensus 176 Ai~~~nD~~A~g~~~~l~~~g~~ 198 (259)
T cd01542 176 AIVCATDTIALGAMKYLQELGRR 198 (259)
T ss_pred CEEECCHHHHHHHHHHHHHCCCC
T ss_conf 32434589999999999981999
No 198
>pfam07085 DRTGG DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).
Probab=27.26 E-value=42 Score=13.89 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=24.5
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH
Q ss_conf 38970688887788827999999997499987811110146657779999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFS 164 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~ 164 (242)
-+|+|||...+ +.+.+.+.+.|+| +-....|||+-+...
T Consensus 64 ~iIlTgg~~p~------~~v~~la~~~~ip-----ii~t~~dT~~ta~~i 102 (105)
T pfam07085 64 GLILTGGFEPS------EEVLKLAEEAGLP-----VLSTPYDTFTTARRI 102 (105)
T ss_pred EEEEECCCCCC------HHHHHHHHHCCCE-----EEEECCCHHHHHHHH
T ss_conf 89994898989------9999999877983-----999668899999998
No 199
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone. These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO. Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=27.12 E-value=42 Score=13.88 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH--HHHCCHHHHHHHHHHHHHHHHHHH-
Q ss_conf 89999999999825200575338970688887788827999999997499987--811110146657779999999762-
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERD--DIKLETQSLDTFQNAQFSSSMIKN- 170 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~--~I~~e~~s~nT~ena~~~~~il~~- 170 (242)
.+|...|+++.++|+.= -++|+||+.=.+ -|.+.-+.+.+.+.++. +|..-+- =|-=++ .+-+|..
T Consensus 57 ~~Ra~~Ai~~A~~G~~V-----AlvSSGDpGiYg--MA~l~~E~~~~~~~~~~~~dieV~PG--iTA~~a--AAs~LGaP 125 (254)
T TIGR01466 57 IERAELAIELAKEGKTV-----ALVSSGDPGIYG--MAALVFEILEKKGLEDVAIDIEVIPG--ITAASA--AASLLGAP 125 (254)
T ss_pred HHHHHHHHHHHHCCCEE-----EEEECCCHHHHH--HHHHHHHHHHHCCCCCCCEEEEECCC--HHHHHH--HHHHHCCC
T ss_conf 89999999998609948-----999368752788--89999999862389977234798588--337899--99973363
Q ss_pred CCCCCEEEEC-CHHHHHHHHHHHH
Q ss_conf 3686408853-4588999999999
Q gi|255764508|r 171 MQGKNIILVS-SAYHLKRSQLYFQ 193 (242)
Q Consensus 171 ~~~~~vilVT-sa~Hm~RA~~~f~ 193 (242)
.+-| ...|+ |+-=.|.+.-+-|
T Consensus 126 L~HD-Fc~ISLSDlLtPw~~Ie~R 148 (254)
T TIGR01466 126 LGHD-FCVISLSDLLTPWPVIEKR 148 (254)
T ss_pred CCCC-EEEEECCCCCCCHHHHHHH
T ss_conf 1137-8888745556787899999
No 200
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=27.11 E-value=25 Score=15.33 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH----------------------C
Q ss_conf 589999999999825200575338970688887788827999999997499987811----------------------1
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIK----------------------L 150 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~----------------------~ 150 (242)
+..|=.+.++..++ .+.|+.+=-=. .=+.+.+-+-|=+..+++| +++|- +
T Consensus 130 A~~~Kl~~A~~v~~-----~g~PltLN~V~-HR~Ni~~i~~~i~La~~L~--AdrvE~A~~QyYGWA~~NR~aLlPt~~Q 201 (363)
T TIGR02109 130 AFEQKLAVARAVKA-----AGLPLTLNFVL-HRHNIDQIPEIIELAIELG--ADRVELATTQYYGWALLNRAALLPTREQ 201 (363)
T ss_pred HHHHHHHHHHHHHH-----CCCCEEEEHCC-CCCHHHHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHCCCCHHH
T ss_conf 89999999999996-----18981760200-2420213678999998638--9848887402022567745424898899
Q ss_pred CHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCHHHHHHHHHHHH---HCCCEEEEEE
Q ss_conf 10146657779999999762-36864088534588999999999---7698189984
Q gi|255764508|r 151 ETQSLDTFQNAQFSSSMIKN-MQGKNIILVSSAYHLKRSQLYFQ---HFGINTKASC 203 (242)
Q Consensus 151 e~~s~nT~ena~~~~~il~~-~~~~~vilVTsa~Hm~RA~~~f~---~~gi~~~p~~ 203 (242)
-++|+-+.++++ +-++- .+.-+++.||.+||-.|=+.++. +..++|.|..
T Consensus 202 l~~a~r~V~~aR---er~~g~~~~~~l~yV~PDYY~~RPK~CMgGWG~~fl~VTP~G 255 (363)
T TIGR02109 202 LEEATRIVEEAR---ERLKGQGNPLSLDYVVPDYYAERPKACMGGWGRVFLNVTPAG 255 (363)
T ss_pred HHHHHHHHHHHH---HHHHHCCCCCEEEEECCCCHHCCCCCCCCCCCCCCEEECCCC
T ss_conf 999999999999---998607998236763487121068755686012223247788
No 201
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=27.02 E-value=41 Score=13.97 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
Q ss_conf 88279999999974999878111101466577799999997623686408853458
Q gi|255764508|r 128 LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAY 183 (242)
Q Consensus 128 ~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~ 183 (242)
.+.+.-+++.+.++| ..+-=.+.-|+.||...+++++.-+.+++++=|++.
T Consensus 157 FsGs~e~a~~~~d~G-----~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsP 207 (256)
T COG0084 157 FSGSAEEARKLLDLG-----FYISISGIVTFKNAEKLREVARELPLDRLLLETDAP 207 (256)
T ss_pred CCCCHHHHHHHHHCC-----EEEEECCEEECCCCHHHHHHHHHCCHHHEEECCCCC
T ss_conf 789799999999769-----289978666417858899999959976768645798
No 202
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.96 E-value=43 Score=13.86 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=50.6
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH-HHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999-99997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQF-SSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~-~~~il~~~~~~~vi 177 (242)
+-.|.+.|.. +|.+-||........| -+..++.+.+.|++...+. .+..|+|.+.. .++++++....+.+
T Consensus 107 ~~~L~~~Gh~-----~I~~i~~~~~~~~~~~R~~G~~~al~~~gl~~~~~~---~~~~~~~~g~~~~~~ll~~~~~ptAi 178 (266)
T cd06278 107 AELLLAKGCR-----RIAFIGGPADTSTSRERERGFRDALAAAGVPVVVEE---AGDYSYEGGYEAARRLLASRPRPDAI 178 (266)
T ss_pred HHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE---CCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999980998-----899996888881499999999999998699943898---18999899999999998459998862
Q ss_pred EECCHHHHHHHHHHHH-HCCCE
Q ss_conf 8534588999999999-76981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQ-HFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~-~~gi~ 198 (242)
+.+|+..-.-++..++ +.|+.
T Consensus 179 ~~~nD~~A~g~l~~l~~~~g~~ 200 (266)
T cd06278 179 FCANDLLAIGVMDAARQEGGLR 200 (266)
T ss_pred EECCHHHHHHHHHHHHHHCCCC
T ss_conf 5077899999999999735888
No 203
>PRK13462 acid phosphatase; Provisional
Probab=26.48 E-value=43 Score=13.80 Aligned_cols=25 Identities=20% Similarity=0.589 Sum_probs=16.2
Q ss_pred HHHHHHCCCCCEEEECCHHHHHHHHH
Q ss_conf 99976236864088534588999999
Q gi|255764508|r 165 SSMIKNMQGKNIILVSSAYHLKRSQL 190 (242)
Q Consensus 165 ~~il~~~~~~~vilVTsa~Hm~RA~~ 190 (242)
.++++++..+++++||.+ +.-|+..
T Consensus 131 ~~i~~~~~~~~vlvVsHg-~~iR~ll 155 (203)
T PRK13462 131 ALALEHMESRDVVFVSHG-HFSRAVI 155 (203)
T ss_pred HHHHHHCCCCEEEEEECC-HHHHHHH
T ss_conf 999987799818999484-8999999
No 204
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=26.31 E-value=44 Score=13.78 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=23.5
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 897068888778882799999999749998781111014665777999999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS 166 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~ 166 (242)
+++.||.| ++=-..|-+.+.+.+-. .+|.+-.-+++ .+.+.+..+
T Consensus 117 vlIAgG~G----ItP~~sml~~l~~~~~~-~~i~l~yg~r~-~~d~~~~~e 161 (247)
T cd06184 117 VLISAGVG----ITPMLSMLEALAAEGPG-RPVTFIHAARN-SAVHAFRDE 161 (247)
T ss_pred EEEECCCC----CCHHHHHHHHHHHCCCC-CCEEEEEECCC-HHHHHHHHH
T ss_conf 99966876----35499999999864999-84899995699-799378999
No 205
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=26.26 E-value=44 Score=13.78 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=31.8
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCEEE-ECCCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 8999625213777765554346820589999999999825-2005753389-7068888778882799999999749998
Q gi|255764508|r 68 IIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSC-KQHSMHCTII-ISGGDPQKHGLAESIVYNNKLLESGVER 145 (242)
Q Consensus 68 ~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~-~~~~~~~~ii-~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~ 145 (242)
|||||+||. ||+ +-++...+.| +- .|. +|=--|+----.|=+..++.+..+||+.
T Consensus 1 Av~~lSGG~---------------DSt---T~~~~a~~~~Gky-----eV~a~TF~YGQR~H~~Ele~A~~ia~~Lgi~~ 57 (227)
T TIGR00364 1 AVVVLSGGQ---------------DST---TVLLIALDEGGKY-----EVHAITFDYGQRAHSRELESARKIAEALGIRH 57 (227)
T ss_pred CEEEEECCH---------------HHH---HHHHHHHHCCCCE-----EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 968743734---------------689---9999999617950-----79985465013789999999999999808970
Q ss_pred H
Q ss_conf 7
Q gi|255764508|r 146 D 146 (242)
Q Consensus 146 ~ 146 (242)
.
T Consensus 58 ~ 58 (227)
T TIGR00364 58 H 58 (227)
T ss_pred E
T ss_conf 7
No 206
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=26.09 E-value=44 Score=13.76 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999825200575338970688887788827999999997499987811110146657779999999762368
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG 173 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~ 173 (242)
+.++.+...+.+. ...+++|.+.. .+=+..+.+...+.++|+++++.+.-.-|.|=.+-|+ .-|.
T Consensus 131 ~~~iL~~lgL~~~-------Fd~VvggDdv~-~~KPdP~~ll~ale~lGv~P~e~l~VGDS~~DI~AAk-------aAGi 195 (272)
T PRK13223 131 VAPLLDQMKIGRY-------FRWIIGGDTLP-QKKPDPAALLFVMKMAGVPPSQSLFVGDSRSDVLAAK-------AAGV 195 (272)
T ss_pred HHHHHHHCCCHHH-------CCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCHHHEEEECCCHHHHHHHH-------HCCC
T ss_conf 9999987497241-------46453457699-9999989999999995989768888889888999999-------8699
Q ss_pred CCEEEECCHHHHHHHHHHHH
Q ss_conf 64088534588999999999
Q gi|255764508|r 174 KNIILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 174 ~~vilVTsa~Hm~RA~~~f~ 193 (242)
+++-||=.||..+......
T Consensus 196 -~~VgVtyGYn~g~~i~~~~ 214 (272)
T PRK13223 196 -QCVALSYGYNHGRPIAEES 214 (272)
T ss_pred -CEEEECCCCCCCCCHHHCC
T ss_conf -5899747999986366749
No 207
>pfam02230 Abhydrolase_2 Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.
Probab=26.06 E-value=44 Score=13.75 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHCCCEEE
Q ss_conf 45889999999997698189
Q gi|255764508|r 181 SAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 181 sa~Hm~RA~~~f~~~gi~~~ 200 (242)
..-...++...+++.|.++.
T Consensus 167 p~~~~~~~~~~L~~~g~~v~ 186 (213)
T pfam02230 167 PLALGKLAKEYLKTLGNTVE 186 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEE
T ss_conf 79999999999997799869
No 208
>pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356).
Probab=25.98 E-value=44 Score=13.74 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCE
Q ss_conf 99999982520057533897068888778882-7999999997499987811110146657779999-999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~v 176 (242)
.+-.|++.|..+ .+.+.+|........| -+..++.+.+.|++.+..++... .++.+.+... .++++++...+.
T Consensus 111 a~~~Li~~Ghrr----~i~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~-~~~~~~g~~~~~~ll~~~~~~~A 185 (281)
T pfam00532 111 STQYLIAEGHKR----PIAVMAGPASALTARERVQGFMAALAAAGREVKIYHVATG-DNDIPDAALAANAMLVSHPTIDA 185 (281)
T ss_pred HHHHHHHHCCCC----CEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 999999838977----0477307876507899999999999975999982068836-88889999999999854999609
Q ss_pred EEECCHHHHHHHHHHHHHCC-CE
Q ss_conf 88534588999999999769-81
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFG-IN 198 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~g-i~ 198 (242)
++..++.--.-++..+++.| ++
T Consensus 186 i~~~nD~~A~G~~~al~~~G~~~ 208 (281)
T pfam00532 186 IVAMNDEAAMGAVRALLKQGRVK 208 (281)
T ss_pred EEECCHHHHHHHHHHHHHCCCCC
T ss_conf 99758799999999999829997
No 209
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein; InterPro: IPR014337 Members of this entry are the extracellular solute-binding proteins of ABC transporters and they closely resemble amino acid transporters. The member from Sinorhizobium meliloti (Rhizobium meliloti) is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes..
Probab=25.81 E-value=45 Score=13.72 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 2005753389706888877888279999999974999878111101466577799
Q gi|255764508|r 108 KQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQ 162 (242)
Q Consensus 108 ~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~ 162 (242)
-++++..||=+.||. .--+|+.+-||+.++|+.-+...+..+..+
T Consensus 140 iAknP~~K~a~~~G~----------~e~~~ar~~GVk~eqi~~vPd~~~~l~~vq 184 (285)
T TIGR02995 140 IAKNPEVKVAVVAGA----------VEVKYAREAGVKEEQIVVVPDTASALKAVQ 184 (285)
T ss_pred HHCCCCCEEEECCCC----------HHHHHHHHCCCCCCEEEEECCCHHHHHHHH
T ss_conf 006823127612472----------378999865898660788248716788877
No 210
>pfam10742 DUF2555 Protein of unknown function (DUF2555). This family is conserved in Cyanobacteria. The function is not known.
Probab=25.76 E-value=45 Score=13.72 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 4665777999999976236864088534588999999999
Q gi|255764508|r 154 SLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 154 s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~ 193 (242)
+.-|.|.....++.+++.+..+..=.-+++|..||..+=|
T Consensus 7 ~~f~ee~va~LA~RLE~DdY~~pFd~L~DWhlLRalA~~R 46 (57)
T pfam10742 7 AAFTEEDVAELAKRLEEDDYPNPFDGLKDWHLLRALAIHR 46 (57)
T ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 6669999999998632325887124566789999999518
No 211
>PRK01581 speE spermidine synthase; Validated
Probab=25.75 E-value=44 Score=13.79 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHCCCCHHHHHCC-HHHHHHHHHHHHHHHH---HHH-CCCCC--EEEECCHHHHHHHHHHH----HHCCCEEEEEE
Q ss_conf 99999749998781111-0146657779999999---762-36864--08853458899999999----97698189984
Q gi|255764508|r 135 NNKLLESGVERDDIKLE-TQSLDTFQNAQFSSSM---IKN-MQGKN--IILVSSAYHLKRSQLYF----QHFGINTKASC 203 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e-~~s~nT~ena~~~~~i---l~~-~~~~~--vilVTsa~Hm~RA~~~f----~~~gi~~~p~~ 203 (242)
-++|.+.+-.=+.|+++ +...|.--|-.||.+. +++ ...+- ++=-||+||-|+|.++- +..|+.+.||-
T Consensus 206 f~wL~~~~~~FDvIIVDlPDP~n~~L~KLYS~eFY~Ll~~~La~dG~~vVQSTSPyfApkaFWsI~~Tl~aAGl~t~pYH 285 (363)
T PRK01581 206 KEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH 285 (363)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHHHHCCCCCCCCE
T ss_conf 99986167544289995899986246667359999999986198853999607976576233677777987367541342
Q ss_pred CCCCCCC
Q ss_conf 2664431
Q gi|255764508|r 204 SDYLNAY 210 (242)
Q Consensus 204 ~d~~~~~ 210 (242)
++-.+..
T Consensus 286 v~VPSFG 292 (363)
T PRK01581 286 TIVPSFG 292 (363)
T ss_pred ECCCCCC
T ss_conf 0688886
No 212
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=25.69 E-value=45 Score=13.71 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=21.2
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 389706888877888279999999974999878111101466577799999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS 165 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~ 165 (242)
-++++||.| ++=--.|-+.+.+.|. ...|.+-.-+++ .+...+..
T Consensus 212 lvlIAgGtG----iaPilSmL~~l~~~~~-~~~v~L~~G~R~-~~dl~~~~ 256 (340)
T PRK11872 212 LVFVAGGTG----LSAFLGMLDNLVEQGC-SPPVHLYYGVRS-EADLCELQ 256 (340)
T ss_pred EEEEECCCC----HHHHHHHHHHHHHHCC-CCCEEEEEECCC-HHHHHHHH
T ss_conf 799944865----3779999999998189-986799996499-79977799
No 213
>pfam00919 UPF0004 Uncharacterized protein family UPF0004. This family is the N terminal half of the Prosite family. The C-terminal half has been shown to be related to MiaB proteins. This domain is a nearly always found in conjunction with pfam04055 and pfam01938 although its function is uncertain.
Probab=25.43 E-value=45 Score=13.68 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=28.6
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 545687589996252137777655543468205899999999998252005753389706888
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDP 123 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~ 123 (242)
+...++|.+|+=+++++... .++....+.-++.- +.++.+|+++|=.+
T Consensus 32 ~~~~~AD~iiiNTC~V~~~A-------------~~k~~~~i~~~~~~--~~p~~~iiv~GC~a 79 (98)
T pfam00919 32 DDPEEADVVVVNTCAVREKA-------------EQKSRQTIRRLKRL--KNPDAKIVVTGCMA 79 (98)
T ss_pred CCHHCCCEEEEEEEECCHHH-------------HHHHHHHHHHHHHH--CCCCCEEEEEEECC
T ss_conf 87100998999961311289-------------99999999999984--29998899998503
No 214
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=25.16 E-value=27 Score=15.19 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.2
Q ss_pred EEEECCHHHH
Q ss_conf 0885345889
Q gi|255764508|r 176 IILVSSAYHL 185 (242)
Q Consensus 176 vilVTsa~Hm 185 (242)
+-+||+..+.
T Consensus 117 ltVvTNsl~i 126 (240)
T PRK10411 117 IQVFTNSHPI 126 (240)
T ss_pred EEEEECCHHH
T ss_conf 1999898999
No 215
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.13 E-value=46 Score=13.64 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=74.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----HHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7589996252137777655543468205899999999-----99825200575338970688887788827999999997
Q gi|255764508|r 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMR-----LYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 66 ~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~-----L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
.++|++--. ++..+|+.+|++ +.+.|...+-+. .+.|-..-.+...+|.++-.....+
T Consensus 145 rTAilmPiy----------------nEd~~rVfAgLrA~~eSla~Tg~~~~FD~-FVLSDs~dpdialAEq~a~~~l~~e 207 (736)
T COG2943 145 RTAILMPIY----------------NEDVNRVFAGLRATYESLAATGHAEHFDF-FVLSDSRDPDIALAEQKAWAELCRE 207 (736)
T ss_pred CEEEEEECC----------------CCCHHHHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 215773034----------------66789999989999999986176120028-9974899822566689999999998
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-CCEEEE------CCHHHHHHHHHHHHH---CCC-EEEEEECC
Q ss_conf 499987811110146657779999999762368-640885------345889999999997---698-18998426
Q gi|255764508|r 141 SGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG-KNIILV------SSAYHLKRSQLYFQH---FGI-NTKASCSD 205 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~-~~vilV------Tsa~Hm~RA~~~f~~---~gi-~~~p~~~d 205 (242)
.+- ..+|..--+-+|+---+=|..++.+.-|. .+-.+| -+.--|-|-....+. .|+ .+.|...+
T Consensus 208 ~~g-~~~ifYRrRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~g 282 (736)
T COG2943 208 LGG-EGNIFYRRRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASG 282 (736)
T ss_pred HCC-CCCEEEHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHCC
T ss_conf 367-772664067555223346788999873765325899605433572789999999852999760321503328
No 216
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=25.09 E-value=46 Score=13.64 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHCCHHHHHHHH--HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH----CCCE-EEEEECC
Q ss_conf 78111101466577--79999999762368640885345889999999997----6981-8998426
Q gi|255764508|r 146 DDIKLETQSLDTFQ--NAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQH----FGIN-TKASCSD 205 (242)
Q Consensus 146 ~~I~~e~~s~nT~e--na~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~----~gi~-~~p~~~d 205 (242)
+-|++|..+++-++ ...+.+++.+..+++.++||-++-.-..+...++. .|++ ++..-.|
T Consensus 84 D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlD 150 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLD 150 (173)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 9899978887879999999999998644897215742465506589999998742799789997143
No 217
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.02 E-value=46 Score=13.63 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=11.7
Q ss_pred CCCCCCCEEEEECC
Q ss_conf 54568758999625
Q gi|255764508|r 61 QWKKDGNIIVLLGN 74 (242)
Q Consensus 61 ~~~~~~d~IVVLGg 74 (242)
++.+++|.||++||
T Consensus 35 dd~~~aDliI~iGG 48 (264)
T PRK03501 35 DDPKNANIIVSIGG 48 (264)
T ss_pred CCCCCCCEEEEECC
T ss_conf 89889899999997
No 218
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=24.92 E-value=46 Score=13.62 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=54.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE-ECCCCCCCCCCCHHHHHHHH-HHHCCCCH
Q ss_conf 89996252137777655543468205899999999998252005753389-70688887788827999999-99749998
Q gi|255764508|r 68 IIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTII-ISGGDPQKHGLAESIVYNNK-LLESGVER 145 (242)
Q Consensus 68 ~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii-~SGg~~~~~~~~Ea~~m~~~-l~~~Gv~~ 145 (242)
.||-|==|...+.. -..+|+...++=.+=.|+.|+| +||-+...+-. .|--|-.| +.++=+++
T Consensus 43 ~VVTLDLGLPPd~d--------------~a~EGl~~L~qIL~~~P~TKVIViTGN~~r~NAl-kAi~lGAYDFyqKP~d~ 107 (451)
T TIGR02915 43 AVVTLDLGLPPDAD--------------GASEGLAALQQILAIAPDTKVIVITGNDDRENAL-KAIGLGAYDFYQKPIDP 107 (451)
T ss_pred CEEECCCCCCCCCC--------------CHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH-HHHHCCCCCCCCCCCCH
T ss_conf 64773675578988--------------7458999999999638980489986689838899-99643751013578757
Q ss_pred HHH-HCCHHHHHHHHHHHHHHHHHHHCC-CCCE--EEECCHHHHHHHHHHHHHC
Q ss_conf 781-111014665777999999976236-8640--8853458899999999976
Q gi|255764508|r 146 DDI-KLETQSLDTFQNAQFSSSMIKNMQ-GKNI--ILVSSAYHLKRSQLYFQHF 195 (242)
Q Consensus 146 ~~I-~~e~~s~nT~ena~~~~~il~~~~-~~~v--ilVTsa~Hm~RA~~~f~~~ 195 (242)
+-+ ++-+++..=++==.+=+.+-+..+ ..+. -+||+.--|.|-..+-+|.
T Consensus 108 d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIekv 161 (451)
T TIGR02915 108 DVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIEKV 161 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 899999999888888888769987406887410365220685067898886521
No 219
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=24.55 E-value=47 Score=13.57 Aligned_cols=106 Identities=12% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCC---HHHHHHHHHHHHH
Q ss_conf 4682058999999999982520057533897068888778882799999999749998781111---0146657779999
Q gi|255764508|r 88 EPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLE---TQSLDTFQNAQFS 164 (242)
Q Consensus 88 ~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e---~~s~nT~ena~~~ 164 (242)
..+.....-+.+|++|-.++.... -..+|=| .+.++...+.+..+|++ +.|+++ ....+|+.-+.-.
T Consensus 34 ~in~~D~~AvEeAlrLke~~~~~e---V~vlt~G------p~~a~~~lr~aLAmGaD-raili~d~~~~~~d~~~ta~~L 103 (260)
T COG2086 34 SINPFDLNAVEEALRLKEKGYGGE---VTVLTMG------PPQAEEALREALAMGAD-RAILITDRAFAGADPLATAKAL 103 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCE---EEEEEEC------CHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHH
T ss_conf 258120799999998614688866---9999946------45339999999854887-5999703223675589999999
Q ss_pred HHHHHHCCCCCEEEECC-----HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99976236864088534-----588999999999769818998426
Q gi|255764508|r 165 SSMIKNMQGKNIILVSS-----AYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 165 ~~il~~~~~~~vilVTs-----a~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
++.++..+.+ ++++- .+--.=-.++++..|+...++..+
T Consensus 104 aa~~~~~~~~--LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 104 AAAVKKIGPD--LVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHCCCC--EEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 9999874998--8998134435764665899999869850533788
No 220
>PRK03262 consensus
Probab=24.50 E-value=47 Score=13.57 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=7.6
Q ss_pred HHHHCCCCHHHHHCCHHHH
Q ss_conf 9997499987811110146
Q gi|255764508|r 137 KLLESGVERDDIKLETQSL 155 (242)
Q Consensus 137 ~l~~~Gv~~~~I~~e~~s~ 155 (242)
.+...||++++|++.+-|.
T Consensus 66 iA~~~gv~~~~I~vGnGSd 84 (355)
T PRK03262 66 YAQYAGVKPEQVLVSRGAD 84 (355)
T ss_pred HHHHHCCCHHHEEEECCHH
T ss_conf 9998685855799937899
No 221
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.39 E-value=47 Score=13.55 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHH----HHHHHHHHHH
Q ss_conf 57533897068888778882799999999749998781111014665777----9999999762
Q gi|255764508|r 111 SMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQN----AQFSSSMIKN 170 (242)
Q Consensus 111 ~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~en----a~~~~~il~~ 170 (242)
++++.+|.-||.++......-....+.+.+.|+++ +|++|-.=-|+..+ ..-.+.++++
T Consensus 226 N~~~HiILRGG~~PNY~~~~v~~~~~~l~~~~l~~-~imIDcSHgNS~Kd~~~Q~~V~~~V~~Q 288 (349)
T PRK12756 226 NPYGHIIMRGGKKPNYHAEDIAAACDTLHEFDLPE-HLVVDFSHGNCQKQHRRQLEVAEDICQQ 288 (349)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98724898569989999899999999999769997-3475356665567977858999999999
No 222
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=24.38 E-value=48 Score=13.55 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=43.2
Q ss_pred HHHHCCCCHHHHHCCHHH---HHHHHHHHHHHHHHHHCCCCCE-EEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 999749998781111014---6657779999999762368640-8853458899999999976981899842664
Q gi|255764508|r 137 KLLESGVERDDIKLETQS---LDTFQNAQFSSSMIKNMQGKNI-ILVSSAYHLKRSQLYFQHFGINTKASCSDYL 207 (242)
Q Consensus 137 ~l~~~Gv~~~~I~~e~~s---~nT~ena~~~~~il~~~~~~~v-ilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~ 207 (242)
.+..+|-...-|.+|+-+ -++.+=....++.+...|.+++ |++|+.+...+- ..++++|++.+++.+.-.
T Consensus 204 ~~~~~~~~l~gVRlDs~~~~~G~~~~l~~~vR~~LD~~G~~~vkI~aSggl~e~~I-~~l~~~gID~~GVGt~l~ 277 (302)
T cd01571 204 AAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDI-KELEDVGVDAFGVGTAIS 277 (302)
T ss_pred HHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH-HHHHHCCCCEEECCCCCC
T ss_conf 99974600389980799875877999999999999766988748999699999999-999857999998185437
No 223
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=24.32 E-value=48 Score=13.55 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999982
Q gi|255764508|r 94 YSRIFETMRLYKS 106 (242)
Q Consensus 94 ~~Rl~~a~~L~~~ 106 (242)
.+.+.+-.+-|++
T Consensus 70 fd~Le~~f~~y~e 82 (277)
T cd02029 70 FDLLEELFRTYGE 82 (277)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999866
No 224
>PRK03220 consensus
Probab=24.31 E-value=48 Score=13.55 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHH-HHHHCCCEEEEEECCC
Q ss_conf 99999999749998781111014665777999999976236864088534588999999-9997698189984266
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQL-YFQHFGINTKASCSDY 206 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~-~f~~~gi~~~p~~~d~ 206 (242)
+..++...+..+| +.-.-+-.|.|.+. +++ +.|.+++++=|.++.-|--.. +.+..|-..+-...|+
T Consensus 65 ~~I~~i~~~~~~p----i~vGGGIrs~e~~~---~ll-~~GadkVvigs~a~~~p~~~~~~~~~fG~q~Iv~siD~ 132 (257)
T PRK03220 65 DVVRRTAEQVFIP----LTVGGGVRTVEDVD---SLL-RAGADKVSVNTAAIARPELLAELARRFGSQCIVLSVDA 132 (257)
T ss_pred HHHHHHHHCCCCC----EEEECCCCCHHHHH---HHH-HCCCCEEECHHHHHHCCHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9999998506964----89847858799999---999-81975087206677594777899987098669999998
No 225
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=24.28 E-value=48 Score=13.54 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHCCHHHH-------HHHHHHHHHHHHHHHCCCC-----CEEEE-CCHHHHHHHHH
Q ss_conf 88827999999997499987811110146-------6577799999997623686-----40885-34588999999
Q gi|255764508|r 127 GLAESIVYNNKLLESGVERDDIKLETQSL-------DTFQNAQFSSSMIKNMQGK-----NIILV-SSAYHLKRSQL 190 (242)
Q Consensus 127 ~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~-------nT~ena~~~~~il~~~~~~-----~vilV-Tsa~Hm~RA~~ 190 (242)
++.-+..+...+.++|||.++|++++..- -|+.+....+.-.- .|.+ -+.-+ |++++.+-|++
T Consensus 185 DiNlaKqLNi~l~e~Gv~~e~IVmDP~t~alGYGlEys~s~meRiR~aAL-~gD~~L~~Pii~~~g~e~W~~kEA~~ 260 (322)
T PRK04452 185 DINLAKQLNILLMKLGLPRERIVMDPTTGALGYGLEYSYSVMERIRLAAL-KGDEELQMPMISGVGTEAWKAKEAWM 260 (322)
T ss_pred CHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCEECCCCHHHCCCHHCCC
T ss_conf 77889999999998499867677877754457646778999999999885-59842257624364054404412026
No 226
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=24.24 E-value=48 Score=13.54 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=21.4
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 897068888778882799999999749998781111014665777999999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS 166 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~ 166 (242)
+++.||.| ++=-..|-+.+.+.+-+ .+|.+-.-+++ .+...+-.+
T Consensus 111 llIAgG~G----ItP~~s~l~~~~~~~~~-~~i~l~~g~r~-~~d~~~~~e 155 (235)
T cd06217 111 VLLAGGSG----IVPLMSMIRYRRDLGWP-VPFRLLYSART-AEDVIFRDE 155 (235)
T ss_pred EEEECCCC----CCHHHHHHHHHHHHCCC-CCEEEEEECCC-HHHHHHHHH
T ss_conf 99945877----57699999999970999-73899972599-799666999
No 227
>PRK01215 competence damage-inducible protein A; Provisional
Probab=24.06 E-value=48 Score=13.51 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf 05899999999998252005753389706888877
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKH 126 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~ 126 (242)
+..+|+.++++...+- .+ -+|+|||-|+.+
T Consensus 47 D~~~~I~~~l~~a~~r-~d----~Vi~tGGLGPT~ 76 (264)
T PRK01215 47 DDEEEIVEAFREAIGR-AD----VVVSTGGLGPTY 76 (264)
T ss_pred CCHHHHHHHHHHHHHC-CC----EEEEECCCCCCC
T ss_conf 9899999999999743-89----999948957998
No 228
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.02 E-value=48 Score=13.51 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=4.6
Q ss_pred HHCCCCHHHHHCCHH
Q ss_conf 974999878111101
Q gi|255764508|r 139 LESGVERDDIKLETQ 153 (242)
Q Consensus 139 ~~~Gv~~~~I~~e~~ 153 (242)
.+.|+ ++|++.+.
T Consensus 93 l~~Ga--dkVvigs~ 105 (253)
T PRK02083 93 LRAGA--DKVSINSA 105 (253)
T ss_pred HHCCC--CEEEECCH
T ss_conf 87798--78999984
No 229
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=23.88 E-value=49 Score=13.49 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99999999999621245444645456875899962521377776555434682058999999999982520057533897
Q gi|255764508|r 39 GIIPTILLKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIII 118 (242)
Q Consensus 39 ~~~~~~l~~~le~~~~~~~~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~ 118 (242)
|.++...|.-|..+-. ...+.......|.+-||+- .. .| =.++|.|+ -+++++|-
T Consensus 127 PLT~ITAWElLFDRL~---~~~~~~~~~~~lLIiGgAG-------GV------GS-----I~iQLAR~----LT~ltVIa 181 (338)
T TIGR02817 127 PLTSITAWELLFDRLG---INDPVAGAKRALLIIGGAG-------GV------GS-----ILIQLARQ----LTGLTVIA 181 (338)
T ss_pred CHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEECCCC-------CH------HH-----HHHHHHHH----HCCCEEEE
T ss_conf 0248999999886615---8976888887478973885-------17------89-----99999998----54964999
Q ss_pred CCCCCCC----------CCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
Q ss_conf 0688887----------7888279999999974999878111101466577799999997623686408853458
Q gi|255764508|r 119 SGGDPQK----------HGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAY 183 (242)
Q Consensus 119 SGg~~~~----------~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~ 183 (242)
|+.++.. .-+..+.=|+..+.++++++=+ .=-.-++|=+.+.+..++++++| |.-||=++-
T Consensus 182 TASRpEs~~Wv~~LGAH~VIDHskPL~~ql~~L~l~~v~--~V~SlT~TDqH~~~ive~laPQG--rlaLIDDP~ 252 (338)
T TIGR02817 182 TASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVS--YVFSLTHTDQHFKEIVELLAPQG--RLALIDDPA 252 (338)
T ss_pred ECCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCC--EEECCCHHHHHHHHHHHHHCCCC--CEECCCCCC
T ss_conf 728578999999739918865884368999982889985--57516607899999999856787--400002870
No 230
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=23.85 E-value=49 Score=13.49 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=7.6
Q ss_pred HHHHHHHHHCCCCHHH
Q ss_conf 9999999974999878
Q gi|255764508|r 132 IVYNNKLLESGVERDD 147 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~ 147 (242)
.+|..+|.+.|++...
T Consensus 125 ~l~a~~L~~~Gi~a~~ 140 (288)
T cd04245 125 QLMAAYLNYQGIDARY 140 (288)
T ss_pred HHHHHHHHHCCCCCEE
T ss_conf 9999999968998399
No 231
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase; InterPro: IPR010976 Phosphoglucomutases interconvert D-glucose 1-phosphate and D-glucose 6-phosphate, a reaction which is important for energy metabolism in many organisms and for cell wall biosynthesis in bacteria , . Beta-phosphoglucomutases are monomeric enzymes which interconvert the beta anomers of these compounds using Mg2+ as a cofactor. This entry groups together three clades: the characterised beta-phosphoglucomutases (bPGMs) (including those from Escherichia coli, Bacillus subtilus and Lactococcus lactis, a clade of putative bPGMs from mycobacteria and a clade including the uncharacterised Escherichia coli and Haemophilus influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the 'variant 3' Glu-Asp version of the third conserved HAD domain. The Lactococcus enzyme has been crystallised and studied in detail . It is composed of two distinct regions, an alpha/beta core domain similar to that found in other HAD family members, and a helical cap domain. The core domain contains a central six-stranded parallel beta sheet surrounded by six alpha helices, while the cap domain consists of an antiparallel four alpha-helix bundle. Overall, the monomer forms a "kidney-bean" shape similar to that observed in other HAD family members such as phosphoserine phosphatase. The active site of the enzyme is located at the interface of the two domains..
Probab=23.68 E-value=49 Score=13.47 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=21.6
Q ss_pred HHHC-CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 8111-10146657779999999762368640885345
Q gi|255764508|r 147 DIKL-ETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA 182 (242)
Q Consensus 147 ~I~~-e~~s~nT~ena~~~~~il~~~~~~~vilVTsa 182 (242)
+.+- |.++..-.-+.....+.++++++ ++-++||.
T Consensus 98 ~ll~qE~~~~~~lp~~~~~l~~l~~~~i-~~a~gS~S 133 (211)
T TIGR02009 98 ELLRQELTGAEVLPGIENLLKELKKKGI-AVALGSSS 133 (211)
T ss_pred HHHHHCCCCCHHCCCHHHHHHHHHHCCC-CEEEEECC
T ss_conf 9986226721003655899999986698-57884054
No 232
>PRK00208 thiG thiazole synthase; Reviewed
Probab=23.56 E-value=49 Score=13.45 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=49.0
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE----------EECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999999974999878111101466577799999997623686408----------8534588999999999769818998
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII----------LVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi----------lVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
..-+++-..++ .++--+.+-.|.|+|+.++++.++-...+++ |--+.+-...|-...-+.|+.|-||
T Consensus 54 ~~l~~i~~~~~---~lLPNTAGc~ta~EAVr~A~laRE~~~tnwIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlpY 130 (256)
T PRK00208 54 NLLDLLDPLGV---TLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPY 130 (256)
T ss_pred HHHHHHCCCCC---EECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 58887431585---676664032679999999999999848986999981797677988689999999999889989786
Q ss_pred ECCC
Q ss_conf 4266
Q gi|255764508|r 203 CSDY 206 (242)
Q Consensus 203 ~~d~ 206 (242)
-+|.
T Consensus 131 ~~~D 134 (256)
T PRK00208 131 CTDD 134 (256)
T ss_pred CCCC
T ss_conf 7889
No 233
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=23.48 E-value=49 Score=13.44 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=47.5
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 38970688887788827999999997499987811110146657779999999762368640885345889999999997
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQH 194 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~ 194 (242)
++.+-++.....+..-.+.+++.+.+.|+... ..+....++.+......+++++....++++..++....-++..++.
T Consensus 126 ~i~~i~~~~~~~~~~r~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a~~~ 203 (269)
T cd01391 126 RVALIYGDDGAYGRERLEGFKAALKKAGIEVV--AIEYGDLDTEKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAARE 203 (269)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE--EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 16997379857799999999999998699867--9997134321489999999861899739998888999999999998
Q ss_pred CCCE
Q ss_conf 6981
Q gi|255764508|r 195 FGIN 198 (242)
Q Consensus 195 ~gi~ 198 (242)
.|++
T Consensus 204 ~G~~ 207 (269)
T cd01391 204 AGLT 207 (269)
T ss_pred CCCC
T ss_conf 6989
No 234
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=23.40 E-value=26 Score=15.25 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCCEEEEC---CCCCC-CCCCCH--HHHHHHHHHHCCCCHHHHHCCHH-HHHHHHHHHHHH
Q ss_conf 75338970---68888-778882--79999999974999878111101-466577799999
Q gi|255764508|r 112 MHCTIIIS---GGDPQ-KHGLAE--SIVYNNKLLESGVERDDIKLETQ-SLDTFQNAQFSS 165 (242)
Q Consensus 112 ~~~~ii~S---Gg~~~-~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~-s~nT~ena~~~~ 165 (242)
...|++++ ||.+. ...+.+ |++.++.=+-+||=+.++.+++- -..||+..+..+
T Consensus 55 ~~~P~~I~aMTGG~~~~a~~IN~~LA~aA~e~gi~mgvGSqraal~~P~~~~tF~~vR~~a 115 (349)
T TIGR02151 55 LKAPFLINAMTGGSEEKAGKINRKLARAAEELGIPMGVGSQRAALKDPEVAETFEVVREEA 115 (349)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 1167676145577367888998999999998198154300222112712466699999767
No 235
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=23.10 E-value=50 Score=13.40 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 897068888778882799999999749998781111014665777999999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS 166 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~ 166 (242)
+++.||.|-. =--.|.+.+.+.+-+ .+|.+-.-++ |.+...+..+
T Consensus 107 vlIAgG~Git----P~~s~l~~~~~~~~~-~~v~l~~g~r-~~~dl~~~~e 151 (231)
T cd06215 107 LLLSAGSGIT----PMMSMARWLLDTRPD-ADIVFIHSAR-SPADIIFADE 151 (231)
T ss_pred EEEECCCCCC----CHHHHHHHHHHHCCC-CCCEEEEECC-CHHHHHHHHH
T ss_conf 9998167778----479999999970999-9718997069-9799357999
No 236
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.06 E-value=50 Score=13.39 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHH
Q ss_conf 058999999999982520057533897068888778882799999999749998781111014665777
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQN 160 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~en 160 (242)
+..+++.++++....- . + -+|+|||-|+.++--=.++.++++ |.+ +..+++...-.++
T Consensus 43 D~~~~I~~al~~~~~~-~---d-~vi~tGGlGPT~DDiT~eavA~a~---g~~---l~~~~~~~~~i~~ 100 (170)
T cd00885 43 DDEDRIAEALRRASER-A---D-LVITTGGLGPTHDDLTREAVAKAF---GRP---LVLDEEALERIEA 100 (170)
T ss_pred CCHHHHHHHHHHHHHC-C---C-EEEEECCCCCCCCCCHHHHHHHHH---CCC---CEECHHHHHHHHH
T ss_conf 8899999999999741-9---9-999947877899853899999994---898---2789999999999
No 237
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family; InterPro: IPR006307 This is one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, the flagellar biosynthetic protein FlhB (IPR006136 from INTERPRO). This model may not identify all type III secretion system FlhB homologs. ; GO: 0006810 transport, 0016021 integral to membrane.
Probab=23.03 E-value=50 Score=13.39 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 279999999974999
Q gi|255764508|r 130 ESIVYNNKLLESGVE 144 (242)
Q Consensus 130 Ea~~m~~~l~~~Gv~ 144 (242)
+|..+.+++.+.|||
T Consensus 293 ~A~~~~~~A~~~giP 307 (346)
T TIGR01404 293 QALAVIAYAEEAGIP 307 (346)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999975898
No 238
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=22.93 E-value=51 Score=13.37 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=13.6
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 897068888778882799999999749998781111
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLE 151 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e 151 (242)
++++||.|-. =--.|-+.+...+-. .+|.+-
T Consensus 99 vliAgGtGIa----P~~sml~~l~~~~~~-~~v~l~ 129 (216)
T cd06198 99 IWIAGGIGIT----PFLALLEALAARGDA-RPVTLF 129 (216)
T ss_pred EEEECCCCCC----CHHHHHHHHHHCCCC-CCEEEE
T ss_conf 9997576777----099999999975999-848999
No 239
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.60 E-value=24 Score=15.51 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH-------CCHHHHHHHHHHHHHHH
Q ss_conf 89999999999825200575338970688887788827999999997499987811-------11014665777999999
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIK-------LETQSLDTFQNAQFSSS 166 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~-------~e~~s~nT~ena~~~~~ 166 (242)
.++-.+.+.||.+-|.+-.....=.|||+.+-- ++++-+ -+.++-++ +|+-|+-..|+....
T Consensus 126 Ve~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL------cIARal---Av~PeVlLmDEPtSALDPIsT~kIEeLi~e-- 194 (253)
T COG1117 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRL------CIARAL---AVKPEVLLMDEPTSALDPISTLKIEELITE-- 194 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH------HHHHHH---HCCCCEEEECCCCCCCCCHHHHHHHHHHHH--
T ss_conf 999987757677767776177557873467899------999987---269867874486422481358899999999--
Q ss_pred HHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 9762368640885345889999999997
Q gi|255764508|r 167 MIKNMQGKNIILVSSAYHLKRSQLYFQH 194 (242)
Q Consensus 167 il~~~~~~~vilVTsa~Hm~RA~~~f~~ 194 (242)
++ ..-++++||.. |.-|..+...
T Consensus 195 -Lk--~~yTIviVTHn--mqQAaRvSD~ 217 (253)
T COG1117 195 -LK--KKYTIVIVTHN--MQQAARVSDY 217 (253)
T ss_pred -HH--HCCEEEEEECC--HHHHHHHHHH
T ss_conf -87--46489999379--9998787775
No 240
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=22.50 E-value=52 Score=13.32 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCCEEEEECCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 87589996252137-77765554346820589999999999825200575338970688887788827999999997499
Q gi|255764508|r 65 DGNIIVLLGNGTTI-IPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGV 143 (242)
Q Consensus 65 ~~d~IVVLGgG~~~-~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv 143 (242)
..++|.+=|||+.. +=..|-.......+-+. .+=++-+. .++|+||=.--|.++..+=+. +-+.+++.|+
T Consensus 33 GF~A~YLSGaa~aa~sLGlPDLG~~tL~Eva~---~~r~Itr~-----~~LPlLVD~DTGFGea~nvaR-TVreme~AGa 103 (287)
T TIGR02317 33 GFEAIYLSGAAVAAGSLGLPDLGITTLTEVAE---RARRITRV-----TDLPLLVDADTGFGEALNVAR-TVREMEDAGA 103 (287)
T ss_pred CCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHHHH-----CCCCEEEEEECCCCCHHHHHH-HHHHHHHHHH
T ss_conf 75566101687741320677676678789999---98877753-----048727863328983544999-9999998445
Q ss_pred CHHHHHCCHH
Q ss_conf 9878111101
Q gi|255764508|r 144 ERDDIKLETQ 153 (242)
Q Consensus 144 ~~~~I~~e~~ 153 (242)
. .|++||+
T Consensus 104 A--a~HiEDQ 111 (287)
T TIGR02317 104 A--AVHIEDQ 111 (287)
T ss_pred H--HCCHHHH
T ss_conf 4--0046774
No 241
>PRK03670 competence damage-inducible protein A; Provisional
Probab=22.27 E-value=52 Score=13.29 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf 5899999999998252005753389706888877
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKH 126 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~ 126 (242)
..+++.++++....-..+ -+|+|||-|+.+
T Consensus 45 d~~~I~~~l~~~~~~~~d----~Vi~tGGLGPT~ 74 (252)
T PRK03670 45 DVEEIKSVILEALDRKPE----VLIISGGLGPTH 74 (252)
T ss_pred CHHHHHHHHHHHHHCCCC----EEEECCCCCCCC
T ss_conf 899999999999853799----999838827997
No 242
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD; InterPro: IPR013361 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known..
Probab=22.25 E-value=52 Score=13.29 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCHHHHH-CCHHHHHHHHH
Q ss_conf 2058999999999982520057533897068888778-8827999999997499987811-11014665777
Q gi|255764508|r 91 FQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIK-LETQSLDTFQN 160 (242)
Q Consensus 91 ~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~-~~Ea~~m~~~l~~~Gv~~~~I~-~e~~s~nT~en 160 (242)
....+++..-++=|....++ .+.|.+++|...... ..-+.-+++.|...||++++|+ .-.++.++-+.
T Consensus 58 a~~~~~l~~~l~~~~~~~~~--~l~~~~p~GSaN~~aa~~~~~e~~~~l~~~Gv~a~~iV~~~~~~~~~~~~ 127 (211)
T TIGR02522 58 ASQQDQLLGFLKDWSRASAQ--TLVVVIPSGSANEAAAEAMAAEIRRVLAASGVGARNIVKVVYRAEASGDE 127 (211)
T ss_pred HHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCC
T ss_conf 88899999999998630585--37897588875468899999999999996599720417744557887766
No 243
>PRK03673 competence damage-inducible protein A; Provisional
Probab=22.19 E-value=52 Score=13.28 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 89999999999825200575338970688887
Q gi|255764508|r 94 YSRIFETMRLYKSCKQHSMHCTIIISGGDPQK 125 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~ 125 (242)
.+|+.++++....- + + -+|+|||-|+.
T Consensus 47 ~~~i~~~l~~a~~r-~---D-lVI~tGGLGPT 73 (396)
T PRK03673 47 LDALVAILRERSQH-A---D-VLIVNGGLGPT 73 (396)
T ss_pred HHHHHHHHHHHHHC-C---C-EEEECCCCCCC
T ss_conf 99999999999614-9---9-99993884899
No 244
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=22.18 E-value=52 Score=13.28 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=8.0
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 8758999625213777
Q gi|255764508|r 65 DGNIIVLLGNGTTIIP 80 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~ 80 (242)
+...||=|.+..+..+
T Consensus 77 dvplivkl~~~t~l~~ 92 (265)
T COG1830 77 DVPLIVKLNGSTSLSP 92 (265)
T ss_pred CCCEEEEECCCCCCCC
T ss_conf 7677999646665677
No 245
>pfam06258 DUF1022 Protein of unknown function (DUF1022). This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=22.12 E-value=53 Score=13.27 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHH--H----HHHHHHHCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 68205899999999998252005753389706888877888279--9----99999974999878111101466577799
Q gi|255764508|r 89 PSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESI--V----YNNKLLESGVERDDIKLETQSLDTFQNAQ 162 (242)
Q Consensus 89 ~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~--~----m~~~l~~~Gv~~~~I~~e~~s~nT~ena~ 162 (242)
++.-+.+++.++...+.+.....-..-.++=||.......++.+ . +++.+.+.|. -++-..|+-|=+++.
T Consensus 120 l~~i~~~~l~~~~~~~~~~~~~~~p~i~vLIGG~sk~~~~~~~~~~~l~~~i~~l~~~~~~----~l~it~SRRTP~~~~ 195 (308)
T pfam06258 120 LHRVTPQRLAEAAAAWPELAALPRPRVAVLVGGPSKHFRWDADAARRLLEQLQALLEAYGG----SLLITTSRRTPEAAE 195 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----EEEEEECCCCCHHHH
T ss_conf 5547877887777665540247787699996557878888999999999999999987797----299994688969999
Q ss_pred HHH-HHHHHCC------------------CCCEEEECCHHHHHHHHHHHHH--CCCEEEEEEC
Q ss_conf 999-9976236------------------8640885345889999999997--6981899842
Q gi|255764508|r 163 FSS-SMIKNMQ------------------GKNIILVSSAYHLKRSQLYFQH--FGINTKASCS 204 (242)
Q Consensus 163 ~~~-~il~~~~------------------~~~vilVTsa~Hm~RA~~~f~~--~gi~~~p~~~ 204 (242)
..- +.+.... ....++||++.- .|+.+. -|-.|.-++.
T Consensus 196 ~~l~~~~~~~~~~~~~~~~~~Npy~~~L~~Ad~iiVT~DSv----SMisEA~~tGkPV~i~~l 254 (308)
T pfam06258 196 AALRKLLGPRPGLYVWDGTGPNPYFGFLAWADAVVVTADSV----SMVSEAAATGAPVGVLPL 254 (308)
T ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCEEEEECCHH----HHHHHHHHCCCCEEEEEC
T ss_conf 99998608997289827988645899998588689906718----899999864997799967
No 246
>pfam08986 DUF1889 Domain of unknown function (DUF1889). This domain is found in a set of hypothetical bacterial proteins.
Probab=21.97 E-value=53 Score=13.25 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998252005753389706888877888279999999974999878111101466577799999997
Q gi|255764508|r 95 SRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMI 168 (242)
Q Consensus 95 ~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il 168 (242)
.-+++|++..-. .=+|...++.-.-|-|.-+-+||-++|||++.--+..++.---=|+-++.+..
T Consensus 23 avIdKALDFIg~---------M~~Sas~P~sMdESTAKGifKyLkelGVPAs~~dv~aRg~~egWn~gFT~K~~ 87 (119)
T pfam08986 23 AVIDKALDFIGA---------MDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADLEGWNPGFTEKMV 87 (119)
T ss_pred HHHHHHHHHHCC---------CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 899999987403---------45678898763247888899999981899988999874023158813789999
No 247
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=21.84 E-value=53 Score=13.23 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf 99999999982520057533897068888778-88279999999974999878111101466577-79999999762368
Q gi|255764508|r 96 RIFETMRLYKSCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIKLETQSLDTFQ-NAQFSSSMIKNMQG 173 (242)
Q Consensus 96 Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~-~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~e-na~~~~~il~~~~~ 173 (242)
-+.+|+++..+.++.. +++--.++.-.| ++|+++.+ ++....-...+-..+....|+.. ....++.+.-.-..
T Consensus 11 tv~EA~~lM~~~~~~~----~~VVD~~~~L~GIvt~gDi~R-~~~~~~~~~~~~~~~~~~~~~~~vs~v~t~~~~~~~~~ 85 (133)
T cd04592 11 TLKEALNLMLDEKQSC----VLVVDSDDFLEGILTLGDIQR-FLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISYGGQE 85 (133)
T ss_pred CHHHHHHHHHHHCCCE----EEEECCCCCEEEEEEHHHHHH-HHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf 5999999999818865----799838997899978799999-98762356456320001244432334564203625511
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 64088534588999999999769818998426644
Q gi|255764508|r 174 KNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLN 208 (242)
Q Consensus 174 ~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~ 208 (242)
...+-||.+.-...|..+.++.|++-.|+-.+...
T Consensus 86 ~~~~tv~pd~~l~~a~~lM~~~~i~~LPVV~~~~~ 120 (133)
T cd04592 86 CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf 00389789999999999999869885876707766
No 248
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=21.80 E-value=43 Score=13.83 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=20.5
Q ss_pred HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999997499987811110146657779999999762368640885
Q gi|255764508|r 135 NNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILV 179 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilV 179 (242)
-+.++++|| ++|+.-....+-.|+....++++++-+.+-.|++
T Consensus 134 le~li~~Gv--~RILTsGg~~sa~eg~~~l~~li~~a~gri~Im~ 176 (241)
T COG3142 134 LEQLIELGV--ERILTSGGKASALEGLDLLKRLIEQAKGRIIIMA 176 (241)
T ss_pred HHHHHHCCC--CEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999997697--3786478867555607999999998369879986
No 249
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=21.65 E-value=54 Score=13.21 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=37.0
Q ss_pred EEEEC---CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHH--HHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 38970---688887788827999999997499987811110146--65777999999976236864088534
Q gi|255764508|r 115 TIIIS---GGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSL--DTFQNAQFSSSMIKNMQGKNIILVSS 181 (242)
Q Consensus 115 ~ii~S---Gg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~--nT~ena~~~~~il~~~~~~~vilVTs 181 (242)
-++.+ |-..++-+-..+..|++--+..+++-...+..+-++ ++.+++...-++..+.+. -++|||
T Consensus 100 Dil~~p~~~r~~~gldh~~a~laa~~~valeisl~~ll~~~g~~Ra~~l~~lr~~lrl~rk~~v--~ivvtS 169 (229)
T COG1603 100 DILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLLRSSGYRRARLLSFLRSLLRLARKYDV--PIVVTS 169 (229)
T ss_pred CEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC--CEEEEC
T ss_conf 5897433357775523799999996293699854776504306789999999999999874089--879867
No 250
>pfam09419 DUF2010 Protein of unknown function. This is a family of proteins which show sequence similarity to the HAD superfamily of hydrolases.
Probab=21.61 E-value=54 Score=13.20 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=4.2
Q ss_pred HHHHHHCCCC
Q ss_conf 9999974999
Q gi|255764508|r 135 NNKLLESGVE 144 (242)
Q Consensus 135 ~~~l~~~Gv~ 144 (242)
+.+...+|+|
T Consensus 97 ~~~~~~lgip 106 (166)
T pfam09419 97 EALEKSTGIP 106 (166)
T ss_pred HHHHHHCCCC
T ss_conf 9999864995
No 251
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=21.49 E-value=54 Score=13.19 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHH---HHHHHHHHHHH
Q ss_conf 682058999999999982520057533897068888778882799999999749998781111014---66577799999
Q gi|255764508|r 89 PSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQS---LDTFQNAQFSS 165 (242)
Q Consensus 89 ~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s---~nT~ena~~~~ 165 (242)
.+.....-+.+|++|-..| ....++..|+. ..+++.+.+.+..+|.++ .+++.+.+ .+|+..|...+
T Consensus 33 iNp~D~~AlE~Al~lk~~g----g~v~vvs~G~~-----~~~~~~~~r~alAmGaD~-a~li~d~~~~g~D~~~tA~~La 102 (254)
T PRK12342 33 ISQFDLNAIEAASQLATDG----DEIAALTVGGS-----LLQNSKVRKDVLSRGPHS-LYLVQDAQLEHALPLDTAKALA 102 (254)
T ss_pred CCCCCHHHHHHHHHHHHCC----CCEEEEEECCC-----CHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCHHHHHHHHH
T ss_conf 6865699999999988619----96999995688-----025599999999737988-9998457656668899999999
Q ss_pred HHHHHCCCCCEEEE----CCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99762368640885----34588999999999769818998426
Q gi|255764508|r 166 SMIKNMQGKNIILV----SSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 166 ~il~~~~~~~vilV----Tsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
+.+++.+.+ ++|- ++.....=.-++++.+|+..+.+..+
T Consensus 103 ~~i~~~~~D-LVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 145 (254)
T PRK12342 103 AAIEKIGFD-LLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEE
T ss_conf 999983969-9999362124898857899998709971667999
No 252
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.49 E-value=54 Score=13.19 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 45456875899962521377776555434682058999999999982520057533897068888
Q gi|255764508|r 60 PQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQ 124 (242)
Q Consensus 60 ~~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~ 124 (242)
.+...++|+||+=.|++.... .+++..++.-++.-+ ++.+|+++|=.++
T Consensus 35 ~~~~~eADvviiNTC~V~~~a-------------~~k~~~~i~~~~~~~---p~~~iiVtGC~aq 83 (437)
T COG0621 35 VEDPEEADVVIINTCAVREKA-------------EQKVRSAIGELKKLK---PDAKIIVTGCLAQ 83 (437)
T ss_pred CCCCCCCCEEEEECCEEEEHH-------------HHHHHHHHHHHHHHC---CCCEEEEECCCCC
T ss_conf 698556888999667655359-------------999999999999729---9978999687123
No 253
>pfam11996 DUF3491 Protein of unknown function (DUF3491). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 286 to 3225 amino acids in length. This protein is found associated with pfam04488. This protein is found associated with pfam04488.
Probab=21.29 E-value=55 Score=13.16 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 205899999999998252005753389706888
Q gi|255764508|r 91 FQSYSRIFETMRLYKSCKQHSMHCTIIISGGDP 123 (242)
Q Consensus 91 ~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~ 123 (242)
.++.+|+..|+. ||.+ ++.++||+|
T Consensus 40 e~t~eri~~a~s-yKdY-------ki~i~GG~G 64 (934)
T pfam11996 40 EDTPERIDQAAS-YKDY-------KIIIKGGKG 64 (934)
T ss_pred CCCHHHHHHHHH-HCCE-------EEEEECCCC
T ss_conf 657677888886-2470-------699962787
No 254
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=21.24 E-value=55 Score=13.16 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=21.7
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8970688887788827999999997499987811110146657779999999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSM 167 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~i 167 (242)
++++||.|- +=-..|-+.+.+.|-+ .+|.+-.- ..|.+...+..++
T Consensus 112 vliAgG~Gi----tP~~sml~~~l~~~~~-~~v~l~~g-~r~~~d~~~~~el 157 (241)
T cd06214 112 VLFAAGSGI----TPVLSILKTALAREPA-SRVTLVYG-NRTEASVIFREEL 157 (241)
T ss_pred EEEECCCCC----CHHHHHHHHHHHCCCC-CCEEEEEE-CCCHHHHHHHHHH
T ss_conf 999568751----8499999999974999-83899980-7997997889999
No 255
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=21.22 E-value=55 Score=13.15 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=4.0
Q ss_pred CCEEEEEECCC
Q ss_conf 98189984266
Q gi|255764508|r 196 GINTKASCSDY 206 (242)
Q Consensus 196 gi~~~p~~~d~ 206 (242)
|+++.|..++|
T Consensus 283 g~~~~~s~aNF 293 (346)
T PRK04635 283 GVTVFEGWGNY 293 (346)
T ss_pred CCEECCCCCCE
T ss_conf 90778998808
No 256
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex.
Probab=21.07 E-value=46 Score=13.66 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=39.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 56875899962521377776555434682058999999999982520057533897068888778882799999999749
Q gi|255764508|r 63 KKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESG 142 (242)
Q Consensus 63 ~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~G 142 (242)
-++.|+||.||+=+.+... +.++. .+.+.|=...+.+ +.+.|+++ |-- .+ +.+++.+.+-|
T Consensus 63 GkP~DAVi~LG~VIrG~T~--HfeyV--~~~A~~gia~~a~-------~~~~PV~f--Gil----Tt--~~~eqA~~raG 123 (148)
T TIGR00114 63 GKPYDAVIALGAVIRGGTP--HFEYV--ADEAAKGIADLAL-------DYDVPVIF--GIL----TT--ETIEQAIERAG 123 (148)
T ss_pred CCCCCEEEECCEEEECCCC--CHHHH--HHHHHHHHHHHHH-------HCCCCEEE--CCC----CC--CHHHHHHHHHH
T ss_conf 7963358851147737966--55777--7789999999998-------65987760--332----88--67999999601
Q ss_pred CCHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9987811110146657779999
Q gi|255764508|r 143 VERDDIKLETQSLDTFQNAQFS 164 (242)
Q Consensus 143 v~~~~I~~e~~s~nT~ena~~~ 164 (242)
.. .-.-+++++..---+|.+.
T Consensus 124 ~~-ag~sm~nkG~eaa~~a~e~ 144 (148)
T TIGR00114 124 DK-AGVSMENKGVEAAVKALEM 144 (148)
T ss_pred HH-HCCCHHHHHHHHHHHHHHH
T ss_conf 12-0121356679999999999
No 257
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family. .
Probab=20.93 E-value=55 Score=13.11 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999825-200575338970688887788827999999-9974999878111101466577799999997623
Q gi|255764508|r 94 YSRIFETMRLYKSC-KQHSMHCTIIISGGDPQKHGLAESIVYNNK-LLESGVERDDIKLETQSLDTFQNAQFSSSMIKNM 171 (242)
Q Consensus 94 ~~Rl~~a~~L~~~~-~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~-l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~ 171 (242)
..++.+-++-.|+. |-.. + .|+|=+.+- ..+..-+.+.++ -...||+. |.--.|..-.-++.....+-.++.
T Consensus 54 ~P~l~~w~E~~k~~yPG~~--l-~ivSN~~~~-~~yD~D~~r~k~~~~~lgI~~--~~~a~Kp~~~Gdeim~~~~A~~~~ 127 (196)
T TIGR01668 54 APELREWIEELKAAYPGLK--L-LIVSNNAGL-LEYDKDESRVKALEKELGIPV--LLHAVKPPGKGDEIMAFRRALKEM 127 (196)
T ss_pred CHHHHHHHHHHHHHCCCCE--E-EEEECCCCC-CCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 6366788999985379957--9-998768765-431201478888887518851--147788788833789999998751
Q ss_pred C---CCCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 6---864088534588999999999769818
Q gi|255764508|r 172 Q---GKNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 172 ~---~~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+ .+.+++|=+..|. -++..+..|+-+
T Consensus 128 ~l~s~~~~~vvGDrL~T--Dv~~gNr~G~~t 156 (196)
T TIGR01668 128 GLTSSEQVVVVGDRLFT--DVLGGNRNGFYT 156 (196)
T ss_pred CCCCCCCEEEECCCCHH--HHHHHHHCCCEE
T ss_conf 79873237887895146--788653247234
No 258
>PRK05442 malate dehydrogenase; Provisional
Probab=20.92 E-value=56 Score=13.11 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=5.7
Q ss_pred CCCCCEEEEECC
Q ss_conf 568758999625
Q gi|255764508|r 63 KKDGNIIVLLGN 74 (242)
Q Consensus 63 ~~~~d~IVVLGg 74 (242)
.+++|++|+.+|
T Consensus 78 ~~~aDvviitag 89 (325)
T PRK05442 78 FKDADVALLVGA 89 (325)
T ss_pred HCCCCEEEECCC
T ss_conf 379988998078
No 259
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=20.91 E-value=56 Score=13.11 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=46.8
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC----C-------CCH--HHH
Q ss_conf 589996252137777655543468205899999999998252005753389706888877----8-------882--799
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKH----G-------LAE--SIV 133 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~----~-------~~E--a~~ 133 (242)
..+|.+.+..-.... ...+...+...+.+-+.+.+..+. +|.+.| ..... + .|. |..
T Consensus 23 ~v~l~l~~~~lF~~g----sa~L~~~~~~~L~~va~~L~~~~~-----~I~I~G-HTD~~~~~~~~~~~N~~LS~~RA~a 92 (137)
T TIGR03350 23 RSVVRLRGDELFASG----SAEVRADFEPLLDRIAKALAAVPG-----RITVVG-HTDNVPIRTSRFPSNWHLSEARAKA 92 (137)
T ss_pred EEEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHCCCC-----EEEEEE-ECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999995798718899----632098799999999999970998-----599999-8389877787751046799999999
Q ss_pred HHHHHHHCCCCHHHHHCCHHH
Q ss_conf 999999749998781111014
Q gi|255764508|r 134 YNNKLLESGVERDDIKLETQS 154 (242)
Q Consensus 134 m~~~l~~~Gv~~~~I~~e~~s 154 (242)
..++|.+.|+|++++.....+
T Consensus 93 V~~~L~~~Gi~~~rl~~~g~G 113 (137)
T TIGR03350 93 VADVLAQGGVPAGRVRAEGRG 113 (137)
T ss_pred HHHHHHHCCCCHHEEEEEECC
T ss_conf 999999729972408997012
No 260
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=20.87 E-value=56 Score=13.11 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=9.7
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 68758999625213
Q gi|255764508|r 64 KDGNIIVLLGNGTT 77 (242)
Q Consensus 64 ~~~d~IVVLGgG~~ 77 (242)
.+.|.||-+|||..
T Consensus 83 ~~~D~IiavGGGS~ 96 (366)
T PRK09423 83 NGCDVIIGIGGGKT 96 (366)
T ss_pred CCCCEEEEECCHHH
T ss_conf 49998999378388
No 261
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=20.75 E-value=56 Score=13.09 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=4.4
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999974999
Q gi|255764508|r 134 YNNKLLESGVE 144 (242)
Q Consensus 134 m~~~l~~~Gv~ 144 (242)
+.+.|.+.|||
T Consensus 21 va~~L~~~Gvp 31 (192)
T pfam06057 21 VGSALQKQGVP 31 (192)
T ss_pred HHHHHHHCCCC
T ss_conf 99999977983
No 262
>PRK05211 consensus
Probab=20.75 E-value=56 Score=13.09 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=23.3
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 53389706888877888279999999974999878111101466577799999997623686408
Q gi|255764508|r 113 HCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 113 ~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
..|+-+.||- ..-+.++ .+.+.|+ ++|++-+.+. +|-...+++.+..|.++++
T Consensus 65 ~~Pl~vGGGI------rs~~~i~-~ll~~Ga--dkViigs~a~---~np~li~~~~~~fG~q~Iv 117 (248)
T PRK05211 65 DIPFCVAGGI------KSVEDAR-EILSFGA--DKISINSPAL---ADPTLITRLADRFGVQCIV 117 (248)
T ss_pred CCCEEEECCC------CCHHHHH-HHHHCCC--CEEEECCHHH---HCCHHHHHHHHHCCCCEEE
T ss_conf 9858962780------1389999-9998799--8899897676---1961899999857993699
No 263
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=20.63 E-value=56 Score=13.07 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=12.9
Q ss_pred HHHHHHHHHCCCCHHHHHCCHH
Q ss_conf 9999999974999878111101
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQ 153 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~ 153 (242)
+.+++.|.++|+|+++|..|.-
T Consensus 217 ~a~~~~l~~~Gv~~~~ih~E~F 238 (335)
T PRK10684 217 DWVEQEVKALGVTADRFFKEKF 238 (335)
T ss_pred HHHHHHHHHCCCCHHHEEEEEC
T ss_conf 9999999984998899797556
No 264
>pfam02887 PK_C Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
Probab=20.41 E-value=57 Score=13.04 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=36.1
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC---CCEEEECCHHH
Q ss_conf 75338970688887788827999999997499987811110146657779999999762368---64088534588
Q gi|255764508|r 112 MHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG---KNIILVSSAYH 184 (242)
Q Consensus 112 ~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~---~~vilVTsa~H 184 (242)
+.+||+.-- ++....++....+||-+ +..++...|+.|...+..+.+.+++. ...++||+..+
T Consensus 38 P~~pI~a~T--------~~~~~~r~l~l~~GV~p--~~~~~~~~~~~~~i~~a~~~l~~~g~~~~GD~vVvv~G~p 103 (117)
T pfam02887 38 PGAPIIAVT--------PNEGTARRLALYWGVHP--VLGDERSISTDEIIAEALRVAKDAGLIKKGDLVVVTAGVP 103 (117)
T ss_pred CCCCEEEEC--------CCHHHHHHHHHHCCCEE--EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 998689965--------99899998887659705--9825777999999999999999869999999899984635
No 265
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=20.35 E-value=57 Score=13.04 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=28.8
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHH----HHHCCCCCEEEECC
Q ss_conf 8970688887788827999999997499987811110146657779999999----76236864088534
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSM----IKNMQGKNIILVSS 181 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~i----l~~~~~~~vilVTs 181 (242)
++++||.| ++=-..|-+.+...+-+ ..|.+-.-++| .+.. +..+. .+.+..-+++.|.|
T Consensus 208 vlIAgGtG----iaPi~Sml~~~~~~~~~-~~i~L~~G~R~-~~dl-y~~e~l~~l~~~~~~~~~~~vls 270 (337)
T PRK07609 208 VLLASGTG----FAPIKSIVEHLRAKGIQ-RPVHLYWGVRR-PKDL-YLSALAEQWAEELPNFRYVPVVS 270 (337)
T ss_pred EEEECCCC----HHHHHHHHHHHHHCCCC-CCEEEEEECCC-HHHH-HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99965615----67899999999973999-81899983598-7986-43999999986489848999977
No 266
>PRK10760 murein hydrolase B; Provisional
Probab=20.33 E-value=42 Score=13.91 Aligned_cols=92 Identities=7% Similarity=0.094 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECC----CCCCCCCCCHHHHHHHHHHHC-CCCHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998252005753389706----888877888279999999974-99987811110146657779999999762
Q gi|255764508|r 96 RIFETMRLYKSCKQHSMHCTIIISG----GDPQKHGLAESIVYNNKLLES-GVERDDIKLETQSLDTFQNAQFSSSMIKN 170 (242)
Q Consensus 96 Rl~~a~~L~~~~~~~~~~~~ii~SG----g~~~~~~~~Ea~~m~~~l~~~-Gv~~~~I~~e~~s~nT~ena~~~~~il~~ 170 (242)
-+.+++.+.+++..+- .=+.| ..|...-++. ...+|+++. |=-..+|+ + +.|.. -.++..|++
T Consensus 191 eL~~~L~i~~~~~~dp----~~l~GSwAGAMG~~QFMPS--Sy~~YAVDfDgDG~~DIw--n-~~DAi---aSvANYL~~ 258 (357)
T PRK10760 191 ELETFLLMARDEQDDP----LNLKGSFAGAMGYGQFMPS--SFKQYAVDFDGDGHINLW--D-PVDAI---GSVANYFKA 258 (357)
T ss_pred HHHHHHHHHHHCCCCH----HHCCCCCCCCCCCCCCCCH--HHHHHCCCCCCCCCCCCC--C-CHHHH---HHHHHHHHH
T ss_conf 9999999998579986----6546765412477650868--899728187899867767--5-15899---999999997
Q ss_pred CCCCC---EEEE--------CCHHHHHHHHHHHHHCCCEE
Q ss_conf 36864---0885--------34588999999999769818
Q gi|255764508|r 171 MQGKN---IILV--------SSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 171 ~~~~~---vilV--------Tsa~Hm~RA~~~f~~~gi~~ 199 (242)
+||++ +.+- ...+.-.+.....++.|+..
T Consensus 259 ~GW~~G~pv~v~a~~~~~~l~~g~~~~~~~~~w~~~Gv~~ 298 (357)
T PRK10760 259 HGWVKGDQVAVPANGQAPGLENGFKTRYSISQLAAAGLTP 298 (357)
T ss_pred CCCCCCCEEEEECCCCCHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 3998998168836875011103665676699999869965
No 267
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=20.31 E-value=57 Score=13.03 Aligned_cols=27 Identities=0% Similarity=-0.052 Sum_probs=15.5
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 408853458899999999976981899
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~~~p 201 (242)
..+++...+|.+-..+.....++-+.|
T Consensus 92 ~~l~~~~~~~~Rk~~~~~~ada~I~~p 118 (205)
T COG1611 92 IELITGMDFAERKRAMVRSADAFIVLP 118 (205)
T ss_pred CEEEECCCHHHHHHHHHHHCCEEEEEC
T ss_conf 145532889999999998679899918
Done!