Query gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs 121 out of 1521
Neff 8.2
Searched_HMMs 23785
Date Tue May 31 22:50:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764508.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ca8_A Protein YDCF; two domai 99.9 5.6E-25 2.3E-29 180.9 14.4 114 61-196 32-167 (266)
2 2fep_A Catabolite control prot 89.3 1 4.4E-05 22.9 8.0 94 101-198 126-220 (289)
3 3ez1_A Aminotransferase MOCR f 84.9 1.8 7.7E-05 21.3 7.0 15 187-201 359-373 (423)
4 2d13_A Hypothetical protein PH 83.3 2.1 9E-05 20.9 8.0 110 66-200 5-120 (227)
5 3ff1_A Glucose-6-phosphate iso 81.7 2.5 0.0001 20.5 6.1 124 65-212 75-207 (446)
6 2hsg_A Glucose-resistance amyl 81.0 2.6 0.00011 20.3 7.2 94 100-198 169-264 (332)
7 3hcw_A Maltose operon transcri 79.4 2.9 0.00012 20.0 7.8 93 100-198 123-217 (295)
8 2h9a_A Carbon monoxide dehydro 79.3 2.6 0.00011 20.4 4.7 36 114-156 201-236 (445)
9 2rgy_A Transcriptional regulat 78.7 3.1 0.00013 19.9 10.1 95 99-198 119-214 (290)
10 3brq_A HTH-type transcriptiona 78.3 3.2 0.00013 19.8 8.2 97 97-198 128-225 (296)
11 1qpz_A PURA, protein (purine n 77.5 3.3 0.00014 19.7 9.7 93 99-198 168-263 (340)
12 3g85_A Transcriptional regulat 77.4 3.4 0.00014 19.6 6.6 91 100-198 119-213 (289)
13 1b0z_A Protein (phosphoglucose 76.3 3.6 0.00015 19.4 5.8 73 132-205 118-198 (445)
14 2hqs_H Peptidoglycan-associate 75.5 3.8 0.00016 19.3 6.3 62 88-154 16-86 (118)
15 2zf8_A MOTY, component of sodi 75.1 3.2 0.00014 19.7 4.2 66 86-155 170-244 (278)
16 3d8u_A PURR transcriptional re 73.0 4.3 0.00018 18.9 6.4 83 115-198 122-206 (275)
17 2aiz_P Outer membrane protein 73.0 4.3 0.00018 18.9 5.5 64 86-154 38-110 (134)
18 1dbq_A Purine repressor; trans 72.8 4.4 0.00018 18.9 10.8 94 101-198 119-212 (289)
19 2h0a_A TTHA0807, transcription 70.9 4.8 0.0002 18.6 8.5 64 133-198 140-205 (276)
20 2weu_A Tryptophan 5-halogenase 70.7 4.9 0.0002 18.6 4.4 64 68-151 4-69 (511)
21 2kgw_A Outer membrane protein 68.4 5.4 0.00023 18.3 5.3 64 86-154 32-104 (129)
22 3c3k_A Alanine racemase; struc 67.4 5.7 0.00024 18.1 8.3 93 99-198 115-209 (285)
23 2pyx_A Tryptophan halogenase; 67.3 5.7 0.00024 18.1 6.7 64 67-149 8-81 (526)
24 3egc_A Putative ribose operon 66.6 5.9 0.00025 18.0 7.7 95 98-198 115-211 (291)
25 2q8n_A Glucose-6-phosphate iso 65.8 2.5 0.00011 20.4 2.0 75 131-206 127-207 (460)
26 2yvq_A Carbamoyl-phosphate syn 65.2 6.3 0.00026 17.9 4.6 64 113-192 50-124 (143)
27 1r1m_A Outer membrane protein 64.8 6.4 0.00027 17.8 4.9 76 70-154 11-95 (164)
28 3h5t_A Transcriptional regulat 60.2 7.7 0.00032 17.3 6.2 66 133-198 227-293 (366)
29 1wyz_A Putative S-adenosylmeth 58.4 8.2 0.00035 17.1 4.4 88 131-220 40-150 (242)
30 3dbi_A Sugar-binding transcrip 58.0 8.4 0.00035 17.0 10.4 97 97-198 170-267 (338)
31 2h9a_B CO dehydrogenase/acetyl 55.6 9.2 0.00038 16.8 4.4 25 129-153 185-209 (310)
32 3k4h_A Putative transcriptiona 55.1 9.3 0.00039 16.7 9.9 84 115-198 133-217 (292)
33 2ioj_A Hypothetical protein AF 54.7 9.5 0.0004 16.7 3.7 61 115-192 77-137 (139)
34 2nlv_A XISI protein-like; XISI 53.9 4.4 0.00019 18.9 1.6 23 133-155 79-101 (112)
35 2aqj_A Tryptophan halogenase, 53.0 10 0.00042 16.5 6.2 66 67-152 6-74 (538)
36 2nvm_A FDXN element excision c 52.8 4.7 0.0002 18.7 1.6 25 133-157 93-117 (126)
37 2zr9_A Protein RECA, recombina 52.0 5.1 0.00021 18.5 1.6 52 135-188 103-155 (349)
38 2vaw_A FTSZ, cell division pro 50.3 3.5 0.00015 19.5 0.5 67 116-183 99-168 (394)
39 3dx5_A Uncharacterized protein 50.1 11 0.00047 16.2 7.3 98 93-196 82-191 (286)
40 2nwv_A XISI protein-like; YP_3 49.4 6.9 0.00029 17.6 2.0 24 133-156 81-104 (114)
41 3oon_A Outer membrane protein 48.7 12 0.00049 16.1 6.3 65 86-155 25-99 (123)
42 3d7q_A XISI protein-like; ZP_0 48.2 6.6 0.00028 17.7 1.7 25 133-157 79-103 (112)
43 2cu2_A Putative mannose-1-phos 47.9 9.8 0.00041 16.6 2.5 48 138-186 65-112 (337)
44 3ldt_A Outer membrane protein, 47.6 12 0.00051 16.0 3.3 63 87-153 63-133 (169)
45 3p1t_A Putative histidinol-pho 46.3 13 0.00054 15.9 5.4 66 132-205 55-120 (337)
46 1u94_A RECA protein, recombina 45.3 9.5 0.0004 16.7 2.1 47 133-181 103-149 (356)
47 3d6k_A Putative aminotransfera 44.9 13 0.00056 15.7 7.1 14 191-204 147-160 (422)
48 3bch_A 40S ribosomal protein S 44.2 14 0.00058 15.6 7.6 133 92-241 86-221 (253)
49 2e4g_A Tryptophan halogenase; 43.6 14 0.00059 15.6 6.2 64 66-149 25-91 (550)
50 3h5o_A Transcriptional regulat 43.5 14 0.00059 15.6 6.6 96 98-198 168-264 (339)
51 3k9c_A Transcriptional regulat 42.0 15 0.00062 15.4 9.8 91 100-198 118-210 (289)
52 2iks_A DNA-binding transcripti 41.7 15 0.00063 15.4 4.5 63 133-198 159-222 (293)
53 1jye_A Lactose operon represso 40.5 16 0.00066 15.3 7.5 91 101-199 172-264 (349)
54 1jq5_A Glycerol dehydrogenase; 40.5 16 0.00066 15.3 4.2 14 64-77 85-98 (370)
55 1rq2_A Cell division protein F 40.0 2.3 9.8E-05 20.7 -1.7 66 116-182 99-167 (382)
56 3gv0_A Transcriptional regulat 40.0 16 0.00067 15.2 6.2 91 102-198 121-213 (288)
57 3cyp_B Chemotaxis protein MOTB 39.3 16 0.00069 15.2 5.9 94 90-193 16-128 (138)
58 1nri_A Hypothetical protein HI 37.9 17 0.00072 15.0 5.5 106 66-187 71-181 (306)
59 1uaa_A REP helicase, protein ( 37.6 17 0.00073 15.0 4.1 26 175-200 345-370 (673)
60 1tk9_A Phosphoheptose isomeras 37.4 17 0.00073 15.0 4.8 83 97-181 58-145 (188)
61 1vbk_A Hypothetical protein PH 37.1 18 0.00074 14.9 2.9 28 175-203 182-209 (307)
62 2vxy_A FTSZ, cell division pro 36.6 6.2 0.00026 17.9 0.1 72 112-185 96-170 (382)
63 2zxr_A Single-stranded DNA spe 36.4 18 0.00076 14.9 2.9 94 92-200 60-156 (666)
64 1xp8_A RECA protein, recombina 36.0 18 0.00075 14.9 2.4 48 135-184 116-163 (366)
65 3gh1_A Predicted nucleotide-bi 35.5 19 0.00079 14.8 4.1 22 176-197 230-251 (462)
66 1vi6_A 30S ribosomal protein S 35.3 19 0.00079 14.8 8.8 132 92-241 51-185 (208)
67 1i60_A IOLI protein; beta barr 35.0 19 0.0008 14.7 5.2 89 92-189 81-182 (278)
68 1wek_A Hypothetical protein TT 34.9 17 0.00071 15.1 2.1 22 175-196 113-134 (217)
69 1vim_A Hypothetical protein AF 34.7 19 0.00081 14.7 4.1 53 146-205 91-143 (200)
70 3jvd_A Transcriptional regulat 34.1 20 0.00083 14.6 7.0 62 133-198 195-256 (333)
71 3cmu_A Protein RECA, recombina 33.8 20 0.00084 14.6 2.9 54 135-190 1469-1523(2050)
72 1xm3_A Thiazole biosynthesis p 33.4 20 0.00085 14.6 6.2 65 142-206 60-136 (264)
73 2vap_A FTSZ, cell division pro 33.2 5.5 0.00023 18.3 -0.7 67 116-183 125-194 (364)
74 2z9v_A Aspartate aminotransfer 32.9 21 0.00086 14.5 7.0 20 153-172 145-164 (392)
75 1gq2_A Malic enzyme; oxidoredu 32.3 3.6 0.00015 19.4 -1.7 31 114-146 283-313 (555)
76 3kjx_A Transcriptional regulat 31.8 21 0.0009 14.4 6.8 66 132-198 206-272 (344)
77 3clk_A Transcription regulator 31.4 22 0.00091 14.3 7.4 94 99-198 116-210 (290)
78 3cs3_A Sugar-binding transcrip 30.7 22 0.00094 14.3 5.3 92 98-198 108-202 (277)
79 1mk4_A Hypothetical protein YQ 30.7 22 0.00094 14.3 3.5 36 165-201 94-129 (157)
80 1uta_A FTSN, MSGA, cell divisi 30.4 19 0.00081 14.7 1.8 22 124-145 52-73 (81)
81 1vp8_A Hypothetical protein AF 30.1 23 0.00096 14.2 4.7 27 132-161 88-114 (201)
82 1uu1_A Histidinol-phosphate am 30.1 23 0.00096 14.2 5.1 65 132-206 63-127 (335)
83 3e3m_A Transcriptional regulat 29.6 23 0.00098 14.2 9.2 67 132-198 208-275 (355)
84 1tvc_A Methane monooxygenase c 29.3 19 0.0008 14.7 1.6 26 174-199 211-236 (250)
85 3bbl_A Regulatory protein of L 28.8 24 0.001 14.1 10.3 68 132-199 145-214 (287)
86 2o2c_A GPI, glucose-6-phosphat 28.1 25 0.001 14.0 5.6 78 132-213 238-329 (613)
87 2h5n_A Hypothetical protein PG 26.3 27 0.0011 13.8 2.4 65 90-166 11-75 (133)
88 1ofu_A FTSZ, cell division pro 26.2 27 0.0011 13.8 5.3 118 61-185 50-170 (320)
89 3ctp_A Periplasmic binding pro 25.2 28 0.0012 13.7 2.1 91 99-198 163-256 (330)
90 3huu_A Transcription regulator 25.1 28 0.0012 13.6 5.1 92 99-198 135-227 (305)
91 3c8f_A Pyruvate formate-lyase 24.9 28 0.0012 13.6 4.0 37 160-196 148-191 (245)
92 1x60_A Sporulation-specific N- 24.6 29 0.0012 13.6 2.8 24 155-178 53-76 (79)
93 1zzg_A Glucose-6-phosphate iso 24.5 29 0.0012 13.6 8.6 115 63-206 63-184 (415)
94 3hr8_A Protein RECA; alpha and 24.2 29 0.0012 13.5 2.1 50 135-186 103-152 (356)
95 3kke_A LACI family transcripti 24.1 29 0.0012 13.5 6.9 95 99-198 122-222 (303)
96 2k1s_A Inner membrane lipoprot 23.2 30 0.0013 13.4 5.2 79 67-154 27-114 (149)
97 3gyb_A Transcriptional regulat 23.0 31 0.0013 13.4 8.5 92 99-198 109-201 (280)
98 1edt_A Endo-beta-N-acetylgluco 22.1 32 0.0013 13.3 5.6 112 66-180 38-168 (271)
99 1m3s_A Hypothetical protein YC 22.0 32 0.0013 13.3 3.8 42 146-189 81-122 (186)
100 1z0s_A Probable inorganic poly 21.9 32 0.0014 13.2 1.9 17 58-74 61-77 (278)
101 2zkq_b 40S ribosomal protein S 21.8 32 0.0014 13.2 5.0 132 92-240 53-187 (295)
102 2r6h_A NADH:ubiquinone oxidore 20.4 35 0.0015 13.0 1.6 20 133-152 173-192 (290)
103 3lod_A Putative acyl-COA N-acy 20.3 35 0.0015 13.0 4.3 44 166-210 101-144 (162)
No 1
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12}
Probab=99.93 E-value=5.6e-25 Score=180.85 Aligned_cols=114 Identities=20% Similarity=0.305 Sum_probs=98.9
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC-----------------
Q ss_conf 545687589996252137777655543468205899999999998252005753389706888-----------------
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDP----------------- 123 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~----------------- 123 (242)
..+.++|+||||||+. ..|...|++||+++.+ ++++|||.+
T Consensus 32 ~~p~~aD~IVvlG~~~-----------------l~~~~~A~~L~~~g~a-----~liisGG~G~~T~~l~~~i~~~~~~~ 89 (266)
T 3ca8_A 32 EVPYQADCVILAGNAV-----------------MPTIDAACKIARDQQI-----PLLISGGIGHSTTFLYSAIAQHPHYN 89 (266)
T ss_dssp TCCCCCSEEEEESCCC-----------------HHHHHHHHHHHHHHTC-----CEEEECCSSTTHHHHHHHHHTCTTGG
T ss_pred CCCCCCCEEEECCCCC-----------------HHHHHHHHHHHHCCCC-----CEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 7888999899889982-----------------1899999999980599-----88973698755314565543065445
Q ss_pred --CCCCCCHHHHHHHHHHHC-CCCHHHHHCCHHHHHHHHHHHHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHCC
Q ss_conf --877888279999999974-9998781111014665777999999976236--864088534588999999999769
Q gi|255764508|r 124 --QKHGLAESIVYNNKLLES-GVERDDIKLETQSLDTFQNAQFSSSMIKNMQ--GKNIILVSSAYHLKRSQLYFQHFG 196 (242)
Q Consensus 124 --~~~~~~Ea~~m~~~l~~~-Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~--~~~vilVTsa~Hm~RA~~~f~~~g 196 (242)
...+.+||+.|++++.+. |||+++|++|++|+||.|||.++++++++++ +++++||||+|||+||.+.|+++-
T Consensus 90 ~i~~~g~sEAe~~a~~a~~~~GVp~~~Il~E~~S~NT~eNa~~s~~lL~~~~~~~~siilV~~p~h~rRa~atf~k~~ 167 (266)
T 3ca8_A 90 TIRTTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMT 167 (266)
T ss_dssp GSCCTTSCHHHHHHHHHHHTTCCCGGGEEEECCCCSHHHHHHHHHHHHHTCSSCCSCEEEECCTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 567789889999999999974999999664677777899999999999963999877999898899999999999974
No 2
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=89.29 E-value=1 Score=22.92 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=61.7
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCC-CCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999825200575338970688887-788827999999997499987811110146657779999999762368640885
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQK-HGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILV 179 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~-~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilV 179 (242)
-.|.++|..+ -.+++|..... ........+.....+.|++.+.........+..+.....++++........+++
T Consensus 126 ~~l~~~G~r~----i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 201 (289)
T 2fep_A 126 KLLVDKGHTD----IAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS 201 (289)
T ss_dssp HHHHHTTCSS----EEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE
T ss_pred HHHHHCCCCE----EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999749957----999626754330134566788999998499977222773243114489999999956999965874
Q ss_pred CCHHHHHHHHHHHHHCCCE
Q ss_conf 3458899999999976981
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~ 198 (242)
+++.....++..+++.|++
T Consensus 202 ~~d~~a~g~~~~l~~~g~~ 220 (289)
T 2fep_A 202 ATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp SSHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCC
T ss_conf 7889999999999985999
No 3
>3ez1_A Aminotransferase MOCR family; YP_604413.1, structural genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=84.91 E-value=1.8 Score=21.33 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=6.4
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999976981899
Q gi|255764508|r 187 RSQLYFQHFGINTKA 201 (242)
Q Consensus 187 RA~~~f~~~gi~~~p 201 (242)
+....+++.|+-+.|
T Consensus 359 ~~~~~l~~~gV~v~P 373 (423)
T 3ez1_A 359 RVVKLAEAAGVSLTP 373 (423)
T ss_dssp HHHHHHHHTTEECCC
T ss_pred HHHHHHHHCCEEEEE
T ss_conf 999999978959996
No 4
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=83.34 E-value=2.1 Score=20.90 Aligned_cols=110 Identities=10% Similarity=0.134 Sum_probs=58.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC---CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 758999625213777765554346820589999999999825200575338970---68888778882799999999749
Q gi|255764508|r 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIIS---GGDPQKHGLAESIVYNNKLLESG 142 (242)
Q Consensus 66 ~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~S---Gg~~~~~~~~Ea~~m~~~l~~~G 142 (242)
.+++|..+||.+ -..+...+.++|..-. .++.+ .++.......-.+.++.++..+|
T Consensus 5 ~~v~vl~SGGKD------------------S~lAl~~a~~~G~~v~---~L~t~~~~~~~s~~~h~~~~~ll~~qA~alg 63 (227)
T 2d13_A 5 ADVAVLYSGGKD------------------SNYALYWALKSGLRVR---YLVSMVSENEESYMYHTPNVELTSLQARALG 63 (227)
T ss_dssp CEEEEECCSSHH------------------HHHHHHHHHHTTCEEE---EEEEEECCC---------CCTTHHHHHHHHT
T ss_pred CCEEEECCCCHH------------------HHHHHHHHHHCCCEEE---EEEEEECCCCCCEECCCCCHHHHHHHHHHCC
T ss_conf 649999368699------------------9999999998699279---9999743888814155778999999999759
Q ss_pred CCHHHHHCCHHHHHHH-HHHHHHHHHHHHCCCCCEE--EECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 9987811110146657-7799999997623686408--85345889999999997698189
Q gi|255764508|r 143 VERDDIKLETQSLDTF-QNAQFSSSMIKNMQGKNII--LVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 143 v~~~~I~~e~~s~nT~-ena~~~~~il~~~~~~~vi--lVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
+|- .+..+...+ ++.....+.+++.+.+-++ -+-|.+|-.|-...+++.|+++.
T Consensus 64 iPL----~~~~~~~~~e~~~~~l~~~l~~~~v~~iv~Gdi~~~~~~~~~e~~~~~~gl~~~ 120 (227)
T 2d13_A 64 IPI----IKGFTKGEKEKEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVY 120 (227)
T ss_dssp CCE----EEEEC--CTTSHHHHHHHHHHTBCCSEEECCCSSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCE----EEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHCCCEEE
T ss_conf 971----787467861589999999999717560786237628899999999987498887
No 5
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Probab=81.65 E-value=2.5 Score=20.49 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 875899962521377776555434682058999-9999999825200575338970688887788827999999997499
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRI-FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGV 143 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl-~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv 143 (242)
+.|.||++|=|-. ....|+ .+++. ..........++.+-+.. . .+..+.+.+...--
T Consensus 75 ~~~~iV~IGIGGS--------------~LGpkal~~aL~--~~~~~~~~~~~i~f~~n~-----~-d~~~~~~l~~~l~~ 132 (446)
T 3ff1_A 75 NSDVLVVIGIGGS--------------YLGARAAIEMLT--SSFRNSNEYPEIVFVGNH-----L-SSTYTKELVDYLAD 132 (446)
T ss_dssp HCSEEEEECCGGG--------------THHHHHHHHHHS--CSSCCCCSSCEEEEESSS-----C-CHHHHHHHHHHGGG
T ss_pred CCCEEEEEECCHH--------------HHHHHHHHHHHH--HHHHHCCCCCCEEEECCC-----C-CHHHHHHHHHHHCC
T ss_conf 7988999935087--------------899999999999--887511679817985798-----7-52689999974177
Q ss_pred CHHHHHCCHHHHHHHHHHH---HHHHHHHHCC-----CCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 9878111101466577799---9999976236-----8640885345889999999997698189984266443111
Q gi|255764508|r 144 ERDDIKLETQSLDTFQNAQ---FSSSMIKNMQ-----GKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAYYS 212 (242)
Q Consensus 144 ~~~~I~~e~~s~nT~ena~---~~~~il~~~~-----~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~~~ 212 (242)
....+++-.||-+|.|.+. ..+++++++. .++++.||++--- -....+++.|+++.+.|.+ ..+.++
T Consensus 133 ~~t~~iviSKSg~T~ETl~~~~~~~~~l~~~~~~~~~~~~~~~iT~~~~~-~l~~~a~~~~~~~f~~~~~-VGGRfS 207 (446)
T 3ff1_A 133 KDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKG-ALKQLATNEGYETFIVPDD-VGGRYS 207 (446)
T ss_dssp CCEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHEEEEECSSCS-HHHHHHHHHTCEEEECCTT-CCGGGC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCCCHH-HHHHHHHHCCCCEEECCCC-CCCCCC
T ss_conf 67559999799896889999999999999714735554478997367556-7998743013115505876-777600
No 6
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=80.96 E-value=2.6 Score=20.34 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=55.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882-7999999997499987811110146657779-9999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vi 177 (242)
+-.|.+.|..+ .+++.|+........| -+..++.+.+.|++.....+.+. ..+.+++ ...+++++.+...+.+
T Consensus 169 ~~~l~~~G~~~----~~~i~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai 243 (332)
T 2hsg_A 169 VQSLIDSGHKN----IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEG-DYTYDSGIEAVEKLLEEDEKPTAI 243 (332)
T ss_dssp HHHHHTTTCSC----EEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEEC-CSSHHHHHHHHHHHHHSSSCCSEE
T ss_pred HHHHHHCCCCE----EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC-CCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999759965----9999658778724999999999999983999880037717-898799999999998369999579
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+++..-..+...++..|+.
T Consensus 244 ~~~~d~~A~g~~~al~~~g~~ 264 (332)
T 2hsg_A 244 FVGTDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred EECCCHHHHHHHHHHHHCCCC
T ss_conf 977329999999999984999
No 7
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=79.44 E-value=2.9 Score=20.02 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=54.6
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882--79999999974999878111101466577799999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
+-.|.+.|.. +|.+-+|.... ..+. .+..++.+.+.|++.+-+.......+.++.......++++....+.+
T Consensus 123 ~~~L~~~G~~-----~i~~i~~~~~~-~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai 196 (295)
T 3hcw_A 123 TRHVIEQGVD-----ELIFITEKGNF-EVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAI 196 (295)
T ss_dssp HHHHHHHCCS-----EEEEEEESSCC-HHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEE
T ss_pred HHHHHHCCCC-----CEEEECCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999972987-----56775487431-57888889999999976999424432566035667777777764147776434
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+++....-+...++..|++
T Consensus 197 i~~~d~~a~g~~~~l~~~g~~ 217 (295)
T 3hcw_A 197 ISLDAMLHLAILSVLYELNIE 217 (295)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
T ss_conf 557789999999999986998
No 8
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans}
Probab=79.26 E-value=2.6 Score=20.39 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=20.0
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHH
Q ss_conf 3389706888877888279999999974999878111101466
Q gi|255764508|r 114 CTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLD 156 (242)
Q Consensus 114 ~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~n 156 (242)
+++++|+. ++.++..+...+.++|+ ++|++|+.+.+
T Consensus 201 ~plvvss~-----Din~lk~L~~~l~~~Gv--~dIVLDPg~~~ 236 (445)
T 2h9a_A 201 VPLTVSAK-----GLDALAELVQKITALGY--KNLILDPQPEN 236 (445)
T ss_dssp CCEEEECS-----SHHHHHHHHHHHHHTTC--CCEEEECCCSS
T ss_pred CEEEEECC-----CHHHHHHHHHHHHHCCC--CCEEECCCCCC
T ss_conf 73999579-----98999999999997599--74898898720
No 9
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815}
Probab=78.70 E-value=3.1 Score=19.88 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=56.1
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-HHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999998252005753389706888877888-279999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLA-ESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~-Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|.+.|..+ -.+++| ........ --+...+.+.+.|.+.+.+..-....+..+.....+++++..+..+.+
T Consensus 119 a~~~L~~~G~~~----i~~l~~-~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 193 (290)
T 2rgy_A 119 AAATLIEHGHRK----LAVISG-PFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGL 193 (290)
T ss_dssp HHHHHHHTTCCS----EEEEES-CTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEE
T ss_pred HHHHHHHHCCCE----EECCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 999999839851----621778-732220677777888889970998650220146888899999997520025676338
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+|+.....++..++..|+.
T Consensus 194 ~~~~d~~a~g~~~al~~~g~~ 214 (290)
T 2rgy_A 194 FCANDTMAVSALARFQQLGIS 214 (290)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred EECCCHHHHHHHHHHHHCCCC
T ss_conf 853738888899999986998
No 10
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12}
Probab=78.27 E-value=3.2 Score=19.80 Aligned_cols=97 Identities=9% Similarity=0.079 Sum_probs=54.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCC
Q ss_conf 999999998252005753389706888877888279999999974999878111101466577799-9999976236864
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKN 175 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~ 175 (242)
...+..+++.|..+ ..+++|...........+..++.+.+.|++......... ..+.|.+. ..+++++..+...
T Consensus 128 ~~~~~~l~~~G~~~----i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 202 (296)
T 3brq_A 128 FNAVAELINAGHQE----IAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG-KWTPASGAEGVEMLLERGAKFS 202 (296)
T ss_dssp HHHHHHHHHTTCCS----EEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC-CSSHHHHHHHHHHHHTC--CCS
T ss_pred HHHHHHHHHHCCCC----EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCC
T ss_conf 88899987632450----399946877750577888999999985998761024315-5452207899999985688874
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++++|+.....++..++..|+.
T Consensus 203 ai~~~~d~~A~g~~~~l~~~g~~ 225 (296)
T 3brq_A 203 ALVASNDDMAIGAMKALHERGVA 225 (296)
T ss_dssp EEEESSHHHHHHHHHHHHHHTCC
T ss_pred EEEECCHHHHHHHHHHHHHCCCC
T ss_conf 58856859999999999973998
No 11
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=77.51 E-value=3.3 Score=19.65 Aligned_cols=93 Identities=8% Similarity=0.065 Sum_probs=54.7
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHCCCC--HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999998252005753389706888877-888279999999974999--8781111014665777999999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKH-GLAESIVYNNKLLESGVE--RDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~-~~~Ea~~m~~~l~~~Gv~--~~~I~~e~~s~nT~ena~~~~~il~~~~~~~ 175 (242)
.+-.|+.+|.. +|.+-+|..... .....+...+.+.+.|++ ...+...+.+... -.....+++++++..+
T Consensus 168 a~~~l~~~G~~-----~I~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 240 (340)
T 1qpz_A 168 AGRYLIERGHR-----EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPES--GYRAMQQILSQPHRPT 240 (340)
T ss_dssp HHHHHHHHTCC-----CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHH--HHHHHHHHHTSSSCCS
T ss_pred HHHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHH--HHHHHHHHHHCCCCCC
T ss_conf 99999982998-----6999937644521789999999999986999980138965752568--9999999983799982
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++++++.....+....++.|++
T Consensus 241 ai~~~~d~~A~~~~~~l~~~G~~ 263 (340)
T 1qpz_A 241 AVFCGGDIMAMGALCAADEMGLR 263 (340)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 79956828889998999985998
No 12
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=77.40 E-value=3.4 Score=19.63 Aligned_cols=91 Identities=8% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCH--HHHHCCHHHHHHHHHHHHH-HHHHHHCCCCC
Q ss_conf 9999982520057533897068888778882-799999999749998--7811110146657779999-99976236864
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVER--DDIKLETQSLDTFQNAQFS-SSMIKNMQGKN 175 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~--~~I~~e~~s~nT~ena~~~-~~il~~~~~~~ 175 (242)
+-.|.++|..+ -.+++| ........| -+..++.+.+.|++. +.|... .++.|.+... +++++..+...
T Consensus 119 ~~~L~~~G~r~----i~~i~~-~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~~---~~~~~~~~~~~~~~l~~~~~~~ 190 (289)
T 3g85_A 119 SLLFAKKRYKS----AAAILT-ESLNDAMDNRNKGFIETCHKNGIKISENHIIAA---ENSIHGGVDAAKKLMKLKNTPK 190 (289)
T ss_dssp HHHHHHTTCCB----CEEEEC-CCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEEC---CSSHHHHHHHHHHHTTSSSCCS
T ss_pred HHHHHHCCCCC----EECCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEC---CCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99999749973----411456-767838999986003678872998663147404---4321357898887763178865
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++++++.-...++..++..|++
T Consensus 191 aii~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 191 ALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCC
T ss_pred EEECCCHHHHHHHHHHHHHCCCC
T ss_conf 43317849999999999987986
No 13
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=76.29 E-value=3.6 Score=19.44 Aligned_cols=73 Identities=12% Similarity=-0.000 Sum_probs=45.1
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHH---HHHHHHHHHCC-----CCCEEEECCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999999997499987811110146657779---99999976236-----8640885345889999999997698189984
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNA---QFSSSMIKNMQ-----GKNIILVSSAYHLKRSQLYFQHFGINTKASC 203 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena---~~~~~il~~~~-----~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~ 203 (242)
..+.+.+...-....-+++-.||-+|.|.+ ...++++++.. .++++++|++-- -.....+++.|+++.+.|
T Consensus 118 ~~~~~~l~~l~~~~t~~iviSKSg~T~ETl~~~~~~~~~l~~~~~~~~~~~~~~vit~~~~-~~l~~~a~~~~~~if~~~ 196 (445)
T 1b0z_A 118 TYISHLLDVLEGKDLSINVISKSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTK-GALKKLADQEGYETFVIP 196 (445)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHGGGEEEEECSSC-SHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCEEEECCCHH-HHHHHHHHHCCCCCCCCC
T ss_conf 8999999750766776999989989878999999999999985383665506465325457-788865444233213167
Q ss_pred CC
Q ss_conf 26
Q gi|255764508|r 204 SD 205 (242)
Q Consensus 204 ~d 205 (242)
.+
T Consensus 197 ~~ 198 (445)
T 1b0z_A 197 DN 198 (445)
T ss_dssp TT
T ss_pred CC
T ss_conf 53
No 14
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=75.50 E-value=3.8 Score=19.31 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC---------HHHHHHHHHHHCCCCHHHHHCCHHH
Q ss_conf 468205899999999998252005753389706888877888---------2799999999749998781111014
Q gi|255764508|r 88 EPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLA---------ESIVYNNKLLESGVERDDIKLETQS 154 (242)
Q Consensus 88 ~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~---------Ea~~m~~~l~~~Gv~~~~I~~e~~s 154 (242)
++...+...+.+-++..+.++ ..+|.+.| -....+.. =|+..+++|.+.||++++|.....+
T Consensus 16 ~l~~~~~~~L~~ia~~L~~~p----~~~i~I~G-htD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~rI~~~g~G 86 (118)
T 2hqs_H 16 DIRSDFAQMLDAHANFLRSNP----SYKVTVEG-HADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 86 (118)
T ss_dssp CCCGGGHHHHHHHHHHHHHCT----TCCEEEEE-CCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred CCCHHHHHHHHHHHHHHHHCC----CCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 079989999999999997789----91999999-728998765667799999999999999849980469999974
No 15
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=75.12 E-value=3.2 Score=19.74 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCC-EEEECCC-CCCC-----CCCCH--HHHHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 43468205899999999998252005753-3897068-8887-----78882--7999999997499987811110146
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHC-TIIISGG-DPQK-----HGLAE--SIVYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~-~ii~SGg-~~~~-----~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
..+++..+..++.+-++..+..+ +. .|.+.|= +..+ ...++ |+..+++|++.||++++|.....+.
T Consensus 170 s~~L~~~~~~~L~~ia~~Lk~~p----~~~~I~I~GhTD~~G~~~~N~~LS~~RA~~V~~~L~~~GI~~~rI~v~g~Ge 244 (278)
T 2zf8_A 170 GDQLTKASKKRLSQIADYIRHNQ----DIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRIQVQGYGK 244 (278)
T ss_dssp SSSBCHHHHHHHHHHHHHHTTCC----SCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTSEECCEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECC
T ss_conf 73279999999999999998689----9657999988289997688899999999999999998599979999999756
No 16
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=73.02 E-value=4.3 Score=18.91 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=48.7
Q ss_pred EEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHH-HHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH
Q ss_conf 3897068888778882-799999999749998781111014665777-99999997623686408853458899999999
Q gi|255764508|r 115 TIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQN-AQFSSSMIKNMQGKNIILVSSAYHLKRSQLYF 192 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~en-a~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f 192 (242)
++.+.|+........+ -....+.+.+.|......+.... .++.+. ....++++.+....+.++.+++.--..++..+
T Consensus 122 ~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l 200 (275)
T 3d8u_A 122 NVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHE-APSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFEC 200 (275)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSS-CCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH
T ss_conf 1520466864168999999999999974998761689604-653056899999998750244322307889999999999
Q ss_pred HHCCCE
Q ss_conf 976981
Q gi|255764508|r 193 QHFGIN 198 (242)
Q Consensus 193 ~~~gi~ 198 (242)
+..|++
T Consensus 201 ~~~g~~ 206 (275)
T 3d8u_A 201 HRRVLK 206 (275)
T ss_dssp HHTTCC
T ss_pred HHHCCC
T ss_conf 973887
No 17
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=72.96 E-value=4.3 Score=18.91 Aligned_cols=64 Identities=8% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-------C--HHHHHHHHHHHCCCCHHHHHCCHHH
Q ss_conf 4346820589999999999825200575338970688887788-------8--2799999999749998781111014
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL-------A--ESIVYNNKLLESGVERDDIKLETQS 154 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-------~--Ea~~m~~~l~~~Gv~~~~I~~e~~s 154 (242)
..++...+...+..-+++.+.++ +.+|.+.|- ....+. + =|+..+++|++.||++++|.....+
T Consensus 38 s~~L~~~~~~~L~~ia~~l~~~~----~~~i~I~Gh-tD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~rI~~~g~G 110 (134)
T 2aiz_P 38 KYDITGEYVQILDAHAAYLNATP----AAKVLVEGN-TDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYG 110 (134)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHST----TCCEEEEEE-CCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC----CCEEEEEEE-ECCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 70059999999999999999689----938999986-16868723273479999999999999749851379888805
No 18
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=72.80 E-value=4.4 Score=18.88 Aligned_cols=94 Identities=6% Similarity=0.062 Sum_probs=55.2
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 99998252005753389706888877888279999999974999878111101466577799999997623686408853
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVS 180 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVT 180 (242)
..+...|... -.++.++..........+...+.+.+.|++...........+.........+++++.+..+.++++
T Consensus 119 ~~~~~~g~~~----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 194 (289)
T 1dbq_A 119 RYLIERGHRE----IGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG 194 (289)
T ss_dssp HHHHHTTCCS----EEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred HHHHHCCCCE----EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9998738863----764378854305678887899999972899883079964665456999999998289998089988
Q ss_pred CHHHHHHHHHHHHHCCCE
Q ss_conf 458899999999976981
Q gi|255764508|r 181 SAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 181 sa~Hm~RA~~~f~~~gi~ 198 (242)
++.....++..++..|+.
T Consensus 195 ~d~~A~g~~~~l~~~g~~ 212 (289)
T 1dbq_A 195 GDIMAMGALCAADEMGLR 212 (289)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 709988778999985256
No 19
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=70.92 E-value=4.8 Score=18.61 Aligned_cols=64 Identities=8% Similarity=0.014 Sum_probs=43.4
Q ss_pred HHHHHHHHCCCCHHH--HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 999999974999878--111101466577799999997623686408853458899999999976981
Q gi|255764508|r 133 VYNNKLLESGVERDD--IKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~--I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
..++.+.+.|++.+. +...+.+.+..++ ..+++++.++..+.++++|+.....++...++.|+.
T Consensus 140 Gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~aii~~~d~~a~g~~~al~~~g~~ 205 (276)
T 2h0a_A 140 GFQEALKEAGRPFSPDRLYITRHSQEGGRL--ALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLT 205 (276)
T ss_dssp HHHHHHHHTTCCCCGGGEEEECSSHHHHHH--HHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 999999980999771011111111157999--999988635677689967779999999999986998
No 20
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=70.68 E-value=4.9 Score=18.58 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=36.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH--HHHHHHHHHCCCCH
Q ss_conf 8999625213777765554346820589999999999825200575338970688887788827--99999999749998
Q gi|255764508|r 68 IIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES--IVYNNKLLESGVER 145 (242)
Q Consensus 68 ~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea--~~m~~~l~~~Gv~~ 145 (242)
-|||.|||.. --..|+.|.+..+ ++.+..+|=|+ +.+-.++-|+ ..+..++..+|+++
T Consensus 4 ~VvIvGgG~A------------------G~~tAa~La~~~~-~~~~VtliEs~-~~p~~gVGEst~P~~~~~l~~lGi~e 63 (511)
T 2weu_A 4 SVVIVGGGTA------------------GWMTASYLKAAFD-DRIDVTLVESG-NVRRIGVGEATFSTVRHFFDYLGLDE 63 (511)
T ss_dssp EEEEECCHHH------------------HHHHHHHHHHHHG-GGSEEEEEEC--------CCEECCTTHHHHHHHHTCCH
T ss_pred EEEEECCCHH------------------HHHHHHHHHHHCC-CCCEEEEEECC-CCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 6999898789------------------9999999998658-99879999689-98997702543688999999849997
Q ss_pred HHHHCC
Q ss_conf 781111
Q gi|255764508|r 146 DDIKLE 151 (242)
Q Consensus 146 ~~I~~e 151 (242)
...+.+
T Consensus 64 ~~~i~~ 69 (511)
T 2weu_A 64 REWLPR 69 (511)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
No 21
>2kgw_A Outer membrane protein A; OMPA- like, cell membrane, transmembrane; NMR {Mycobacterium tuberculosis}
Probab=68.44 E-value=5.4 Score=18.27 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-------CH--HHHHHHHHHHCCCCHHHHHCCHHH
Q ss_conf 4346820589999999999825200575338970688887788-------82--799999999749998781111014
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL-------AE--SIVYNNKLLESGVERDDIKLETQS 154 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-------~E--a~~m~~~l~~~Gv~~~~I~~e~~s 154 (242)
...+...+...+..-++..+..+ +.++.+.|= ....+. ++ |...+++|.+.||+.++|.....+
T Consensus 32 s~~l~~~~~~~L~~la~~l~~~~----~~~i~I~Gh-tD~~g~~~~n~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G 104 (129)
T 2kgw_A 32 GASLIPADYEILNRVADKLKACP----DARVTINGY-TDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLG 104 (129)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTCT----TSCEEEEEC-CCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC----CCEEEEEEE-ECCCCCHHHCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEC
T ss_conf 73259889999999999999789----947999998-17988810253799999999999999859998998999974
No 22
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z}
Probab=67.44 E-value=5.7 Score=18.14 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=54.6
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHH-HHHHHHHHHHCCCCCE
Q ss_conf 99999982520057533897068888778882-799999999749998781111014665777-9999999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQN-AQFSSSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~en-a~~~~~il~~~~~~~v 176 (242)
.+-.|+++|..+ ..+++|. .......+ .+..++.+.+.|.+.+.+.... . .+.+. ....+++++.....+.
T Consensus 115 ~~~~l~~~G~~~----i~~i~~~-~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~a 187 (285)
T 3c3k_A 115 VVDQLVKSGKKR----IALINHD-LAYQYAQHRESGYLNRLKFHGLDYSRISYAE-N-LDYMAGKLATFSLLKSAVKPDA 187 (285)
T ss_dssp HHHHHHHTTCCC----EEEEECC-TTSHHHHHHHHHHHHHHHHHTCCCCEEEECS-S-SSHHHHHHHHHHHHSSSSCCSE
T ss_pred HHHHHHHCCCCE----EEEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-C-HHHHHHHHHHHHHHHCCCCCCE
T ss_conf 999999739956----9998244-5664045767999999998599843121222-1-1455578999988741799753
Q ss_pred EEECCHHHHHHHHHHHHHCCCE
Q ss_conf 8853458899999999976981
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
++.+++.....++..++..|++
T Consensus 188 i~~~~d~~a~g~~~~l~~~g~~ 209 (285)
T 3c3k_A 188 IFAISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp EEESSHHHHHHHHHHHHHTTCC
T ss_pred EEECCHHHHHHHHHHHHHCCCC
T ss_conf 7745779999999999984997
No 23
>2pyx_A Tryptophan halogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina ncimb 400}
Probab=67.29 E-value=5.7 Score=18.12 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=38.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--------CCCCCCEEEECCCCCCCCCCCHH--HHHHH
Q ss_conf 589996252137777655543468205899999999998252--------00575338970688887788827--99999
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCK--------QHSMHCTIIISGGDPQKHGLAES--IVYNN 136 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~--------~~~~~~~ii~SGg~~~~~~~~Ea--~~m~~ 136 (242)
.-|||.|||.. =-..|+.|.|... .++.+..+|=|+ +.+..++-|+ ..+..
T Consensus 8 ~~IvIVGGGtA------------------Gw~tA~~Lak~~~~~~~~~~~~~~~~VtlIEs~-~ip~igVGEst~P~~~~ 68 (526)
T 2pyx_A 8 TEIIIVGGGTA------------------GWITAGLLAAEHNVDKGVLAHSPKLNITLIESP-DVATIGVGEGTWPSMRS 68 (526)
T ss_dssp CEEEEECCHHH------------------HHHHHHHHHHHHHEETTEECSSCSCEEEEEECS-SCCCCCSCEECCTHHHH
T ss_pred CEEEEECCCHH------------------HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC-CCCCCCEECCHHHHHHH
T ss_conf 76999898789------------------999999999863203221136899779999689-99997730604899999
Q ss_pred HHHHCCCCHHHHH
Q ss_conf 9997499987811
Q gi|255764508|r 137 KLLESGVERDDIK 149 (242)
Q Consensus 137 ~l~~~Gv~~~~I~ 149 (242)
++..+|+++..-+
T Consensus 69 ~l~~lGi~e~~f~ 81 (526)
T 2pyx_A 69 TLSKIGIDENDFI 81 (526)
T ss_dssp HHHHHTCCHHHHH
T ss_pred HHHHCCCCHHHHH
T ss_conf 9998399989999
No 24
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=66.61 E-value=5.9 Score=18.04 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf 999999982520057533897068888778882-7999999997499987811110146657779-99999976236864
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKN 175 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~ 175 (242)
..+-.|+++|.. ++.+-+|........+ -+..++.+.+.|++......... ..+.+.+ ....++++......
T Consensus 115 ~~~~~L~~~G~~-----~i~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 188 (291)
T 3egc_A 115 TAVEYLIARGHT-----RIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAG-GVRADNGRDGAIKVLTGADRPT 188 (291)
T ss_dssp HHHHHHHHTTCC-----SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC-------CCHHHHHHHHTC-CCCS
T ss_pred HHHHHHHHCCCC-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCC-CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 999999976995-----6988327743305889999999999984998432112367-7645579999999985599985
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++.+++.-...++..+++.|+.
T Consensus 189 ai~~~~D~~A~g~~~al~~~g~~ 211 (291)
T 3egc_A 189 ALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp EEEESSHHHHHHHHHHHHHHTCC
T ss_pred CEECCCHHHHHHHHHHHHHHCCC
T ss_conf 10115789998799999983898
No 25
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=65.81 E-value=2.5 Score=20.42 Aligned_cols=75 Identities=5% Similarity=-0.009 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH---HHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 79999999974999878111101466577799---99999762368---6408853458899999999976981899842
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ---FSSSMIKNMQG---KNIILVSSAYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~---~~~~il~~~~~---~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
.+.+.+.+.+.-..+.-+++-.||-+|.|.+. ..++++++.+. ++++++|+ ..-......+++.++++.+.|.
T Consensus 127 p~~i~~~l~~ld~~~TlfiviSKSGtT~ETl~n~~~~~~~l~~~~~~~~~~~~v~t~-~~~~~l~~~a~~~~~~~f~~~~ 205 (460)
T 2q8n_A 127 PDLMSSVLDRIDPKTTLFNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLITTD-PEKGFLRKLVKEEGFRSLEVPP 205 (460)
T ss_dssp HHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEEC-SSSSHHHHHHHHHTCEEEECCT
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999995389552799998699898899999999999999738865655443314-3167887566886444404887
Q ss_pred CC
Q ss_conf 66
Q gi|255764508|r 205 DY 206 (242)
Q Consensus 205 d~ 206 (242)
+-
T Consensus 206 ~v 207 (460)
T 2q8n_A 206 GV 207 (460)
T ss_dssp TC
T ss_pred CC
T ss_conf 77
No 26
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=65.25 E-value=6.3 Score=17.87 Aligned_cols=64 Identities=8% Similarity=0.160 Sum_probs=39.7
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH-CCHHHH-HHHHHHHHHHHHHHHCCCCCEEEEC---------C
Q ss_conf 5338970688887788827999999997499987811-110146-6577799999997623686408853---------4
Q gi|255764508|r 113 HCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIK-LETQSL-DTFQNAQFSSSMIKNMQGKNIILVS---------S 181 (242)
Q Consensus 113 ~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~-~e~~s~-nT~ena~~~~~il~~~~~~~vilVT---------s 181 (242)
+.+|+.|+| .+++|.+.||+.+.|. ....++ ....|+ .+++++..++ .++-| +
T Consensus 50 Gf~i~AT~G------------Ta~~L~~~gi~~~~V~~~~~~~~~~~~~~i---~~~i~~g~i~-lVINtp~~~~~~~~d 113 (143)
T 2yvq_A 50 GFKLFATEA------------TSDWLNANNVPATPVAWPSQEGQNPSLSSI---RKLIRDGSID-LVINLPNNNTKFVHD 113 (143)
T ss_dssp TCEEEEEHH------------HHHHHHHTTCCCEEECCGGGC-----CBCH---HHHHHTTSCC-EEEECCCCCGGGHHH
T ss_pred CCEEEECHH------------HHHHHHHCCCCEEEEEEECCCCCCCCCCCH---HHHHHCCCEE-EEEECCCCCCCCCCC
T ss_conf 967897358------------999999759851899852136766674339---9998759759-999867899765665
Q ss_pred HHHHHHHHHHH
Q ss_conf 58899999999
Q gi|255764508|r 182 AYHLKRSQLYF 192 (242)
Q Consensus 182 a~Hm~RA~~~f 192 (242)
.|+|+|+-.-+
T Consensus 114 g~~IRR~Av~~ 124 (143)
T 2yvq_A 114 NYVIRRTAVDS 124 (143)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 79999999975
No 27
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=64.77 E-value=6.4 Score=17.81 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=45.4
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH---------HHHHHHHHHH
Q ss_conf 9962521377776555434682058999999999982520057533897068888778882---------7999999997
Q gi|255764508|r 70 VLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE---------SIVYNNKLLE 140 (242)
Q Consensus 70 VVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E---------a~~m~~~l~~ 140 (242)
|.|.+-+.... ...++...+...+.+-++..+..+ ...|.+.| -....|..+ |+..+++|++
T Consensus 11 i~l~~~v~F~~----~s~~L~~~~~~~L~~ia~~l~~~~----~~~I~I~G-htD~~G~~~~N~~LS~~RA~aV~~~L~~ 81 (164)
T 1r1m_A 11 ISLSAKTLFGF----DKDSLRAEAQDNLKVLAQRLSRTN----IQSVRVEG-HTDFMGSDKYNQALSERRAYVVANNLVS 81 (164)
T ss_dssp EEEEHHHHHTT----SSSCCCHHHHHHHHHHHHHHTTSC----EEEEEEEE-ECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCEEECC----CCCCCCHHHHHHHHHHHHHHHHCC----CCEEEEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99777335728----974369899999999999997789----81899999-8189898556269999999999999998
Q ss_pred CCCCHHHHHCCHHH
Q ss_conf 49998781111014
Q gi|255764508|r 141 SGVERDDIKLETQS 154 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s 154 (242)
.||++++|.....+
T Consensus 82 ~Gi~~~ri~~~g~G 95 (164)
T 1r1m_A 82 NGVPVSRISAVGLG 95 (164)
T ss_dssp TTCCGGGEEEEECT
T ss_pred CCCCHHHEEEEEEC
T ss_conf 59998998999976
No 28
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=60.18 E-value=7.7 Score=17.28 Aligned_cols=66 Identities=9% Similarity=0.109 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 99999997499987811110146657779999-9997623686408853458899999999976981
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
...+.+.+.|++.+.+...+...++.+.+... +++++.+...+.++.+|+.....+...+++.|+.
T Consensus 227 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~Gl~ 293 (366)
T 3h5t_A 227 GAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKS 293 (366)
T ss_dssp HHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999839995531354124566677888998864128998765228889999999999985999
No 29
>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1
Probab=58.45 E-value=8.2 Score=17.09 Aligned_cols=88 Identities=10% Similarity=-0.038 Sum_probs=47.9
Q ss_pred HHHHHHHHHHCCCCHHH--H-HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH------HHHHHHHHHHHHCCCEEEE
Q ss_conf 79999999974999878--1-1110146657779999999762368640885345------8899999999976981899
Q gi|255764508|r 131 SIVYNNKLLESGVERDD--I-KLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA------YHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~--I-~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa------~Hm~RA~~~f~~~gi~~~p 201 (242)
....++.|...|+..+. + ..+.+-.|..+.....-+.+. ..+++.+||+| .==.+-...+.+.|++++|
T Consensus 40 tR~t~kLL~~~~i~~~~~~~s~~~~neh~~~~~~~~il~~l~--~g~~valvSDAGtP~ISDPG~~LV~~a~~~~i~V~~ 117 (242)
T 1wyz_A 40 VRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLA--GGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIP 117 (242)
T ss_dssp HHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHHH--TTCCEEEECC-------CHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 789999999728766775003455205567999999999997--599399992689987849629999999958967998
Q ss_pred EECCC-----------CC---CCCCCCCCHHHH
Q ss_conf 84266-----------44---311137545788
Q gi|255764508|r 202 SCSDY-----------LN---AYYSIIPLSANF 220 (242)
Q Consensus 202 ~~~d~-----------~~---~~~~~~p~~~~l 220 (242)
.|-.- .. ...+|+|...+-
T Consensus 118 iPGpSA~i~AL~~SGl~~~~F~F~GFLP~k~~~ 150 (242)
T 1wyz_A 118 LVGPSSIILSVMASGFNGQSFAFHGYLPIEPGE 150 (242)
T ss_dssp CCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTH
T ss_pred ECCCCHHHHHHHHCCCCCCCEEEEEECCCCHHH
T ss_conf 547505878988637888853899712686788
No 30
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=58.02 E-value=8.4 Score=17.05 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999982520057533897068888778882-799999999749998781111014665777999999976236864
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~ 175 (242)
...+-.|+..|.. +|.+-+|........+ .+...+.+.+.|.+.+.........+..+.....+++++..+..+
T Consensus 170 ~~a~~~l~~~G~~-----~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 244 (338)
T 3dbi_A 170 FNAVAELINAGHQ-----EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFS 244 (338)
T ss_dssp HHHHHHHHHTTCC-----SEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHCCCC-----EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 3467787516996-----59999689887569999999999999859986653241378746779999887641487774
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++++|+.....+...++..|+.
T Consensus 245 ai~~~~d~~a~g~~~~l~~~g~~ 267 (338)
T 3dbi_A 245 ALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCC
T ss_pred EEEECCHHHHHHHHHHHHHCCCC
T ss_conf 01426899999999999975998
No 31
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans}
Probab=55.65 E-value=9.2 Score=16.80 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHH
Q ss_conf 8279999999974999878111101
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQ 153 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~ 153 (242)
.++.-+...+.+.||+.++|++|+-
T Consensus 185 ~~~k~l~~~l~~~GI~~~~IilDPG 209 (310)
T 2h9a_B 185 NLSKQLNIMIMEMNLAPNRIIMDPL 209 (310)
T ss_dssp HHHHHHHHHHHTTTCCGGGEEEECC
T ss_pred HHHHHHHHHHHHCCCCHHHEEEECC
T ss_conf 9999999999986999778898157
No 32
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=55.08 E-value=9.3 Score=16.74 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=49.2
Q ss_pred EEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 3897068888778882-799999999749998781111014665777999999976236864088534588999999999
Q gi|255764508|r 115 TIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~ 193 (242)
++.+-++........+ ....+..+...|++......+....+-.......+.++......+.++.+++....-+...++
T Consensus 133 ~i~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~ 212 (292)
T 3k4h_A 133 QIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALS 212 (292)
T ss_dssp CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 08998068765228889999999999728888724310254211489999999995399982899737187899999999
Q ss_pred HCCCE
Q ss_conf 76981
Q gi|255764508|r 194 HFGIN 198 (242)
Q Consensus 194 ~~gi~ 198 (242)
..|+.
T Consensus 213 ~~g~~ 217 (292)
T 3k4h_A 213 KKGFV 217 (292)
T ss_dssp HTTCC
T ss_pred HCCCC
T ss_conf 82898
No 33
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=54.73 E-value=9.5 Score=16.70 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=33.8
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH
Q ss_conf 389706888877888279999999974999878111101466577799999997623686408853458899999999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYF 192 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f 192 (242)
-+|+|||... ++ .+.+.+.+.|+| +-....|||+-+....+...+ +-..+.--+.++..+|
T Consensus 77 ~lIlTg~~~p----~~--~vl~la~~~gip-----vi~t~~dT~~ta~~i~~~~~~------i~~~d~~kI~~~~~l~ 137 (139)
T 2ioj_A 77 CLILTGNLEP----VQ--LVLTKAEERGVP-----VILTGHDTLTAVSRLESVFGR------TRIRGEPKVGIMRELF 137 (139)
T ss_dssp EEEEETTCCC----CH--HHHHHHHHHTCC-----EEECSSCHHHHHHHHHTTCST------TEEEC-----------
T ss_pred EEEEECCCCC----CH--HHHHHHHHCCCC-----EEEECCCHHHHHHHHHHHHCC------CCCCCHHHHHHHHHHH
T ss_conf 9999399997----89--999999876994-----899478799999999998534------7998789999999985
No 34
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=53.93 E-value=4.4 Score=18.85 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 99999997499987811110146
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
.+++.|++.|||+++|++--.+-
T Consensus 79 gIa~eLv~~GVPk~dIVLgFh~P 101 (112)
T 2nlv_A 79 NPAEELVMMGVPREDIVLGLQAP 101 (112)
T ss_dssp CHHHHHHHTTCCGGGEEETTSCG
T ss_pred CHHHHHHHCCCCHHHEEEECCCC
T ss_conf 27999998499889989930683
No 35
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=53.05 E-value=10 Score=16.53 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=37.9
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHH--HHHH-HHHHCCC
Q ss_conf 589996252137777655543468205899999999998252005753389706888877888279--9999-9997499
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESI--VYNN-KLLESGV 143 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~--~m~~-~l~~~Gv 143 (242)
.-|||.|||.. --..|+.|.+.. .++.+..+|=|. +.+..++-|+. .+.+ ++..+||
T Consensus 6 ~~IvIVGgGtA------------------Gw~tAa~Lar~~-~~~~~VtLIEs~-~ip~igVGEst~P~~~~~~~~~lGi 65 (538)
T 2aqj_A 6 KNIVIVGGGTA------------------GWMAASYLVRAL-QQQANITLIESA-AIPRIGVGEATIPSLQKVFFDFLGI 65 (538)
T ss_dssp CEEEEECCSHH------------------HHHHHHHHHHHC-CSSCEEEEEECS-SSCCCCSCEECCTHHHHHTHHHHTC
T ss_pred CEEEEECCCHH------------------HHHHHHHHHHHC-CCCCEEEEEECC-CCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 57999898789------------------999999999870-899979999689-9999761460467699999998399
Q ss_pred CHHHHHCCH
Q ss_conf 987811110
Q gi|255764508|r 144 ERDDIKLET 152 (242)
Q Consensus 144 ~~~~I~~e~ 152 (242)
++.+.+.+.
T Consensus 66 ~E~~f~~~~ 74 (538)
T 2aqj_A 66 PEREWMPQV 74 (538)
T ss_dssp CHHHHGGGG
T ss_pred CHHHHHHHH
T ss_conf 989999983
No 36
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=52.84 E-value=4.7 Score=18.67 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHH
Q ss_conf 9999999749998781111014665
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDT 157 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT 157 (242)
..++.|++.|||+++|++--.+-..
T Consensus 93 gIA~eLv~~GVPk~dIVLgFh~P~~ 117 (126)
T 2nvm_A 93 AIVDEMLVAGIPQTDIILGFHHPSK 117 (126)
T ss_dssp HHHHHHHHTTCCGGGEEETTSCGGG
T ss_pred CHHHHHHHCCCCHHHEEEECCCCCC
T ss_conf 1899999849988997983068330
No 37
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=51.99 E-value=5.1 Score=18.46 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=33.4
Q ss_pred HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC-HHHHHHH
Q ss_conf 99999749998781111014665777999999976236864088534-5889999
Q gi|255764508|r 135 NNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS-AYHLKRS 188 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs-a~Hm~RA 188 (242)
.+++..+||+.++++.-+ -+|.|++....+-+-+.+...+++|-| +-|.||+
T Consensus 103 ~~~a~~~GvD~~~ll~~~--~~~~E~~~~i~~~li~~~~~~liViDSi~al~~~~ 155 (349)
T 2zr9_A 103 PEYAKKLGVDTDSLLVSQ--PDTGEQALEIADMLVRSGALDIIVIDSVAALVPRA 155 (349)
T ss_dssp HHHHHHTTCCGGGCEEEC--CSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHH
T ss_pred HHHHHHCCCCHHHEEEEC--CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 999998399889969978--99699999999999736997389997865568888
No 38
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=50.34 E-value=3.5 Score=19.54 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=43.8
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
Q ss_conf 8970688887788827999999997499987811---1101466577799999997623686408853458
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAY 183 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~ 183 (242)
++++.|.|.+.|..-+.+.++.+.++|+..=.|+ ++.++....++|...-+-|+++ .+.+++|.+.-
T Consensus 99 vfi~aGmGGGTGtGaapviA~~Ake~g~ltv~ivt~PF~~Eg~~r~~~A~~gi~~L~~~-~D~~Ivi~Nd~ 168 (394)
T 2vaw_A 99 VFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAES-VDSLITIPNEK 168 (394)
T ss_dssp EEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCGGGHHHHHHHHHHHHHHHHTT-CSEEEEEEHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_conf 99973389987554689999999981980899930886773178999999999999964-48179986689
No 39
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=50.12 E-value=11 Score=16.23 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH-----HH---HHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH
Q ss_conf 589999999999825200575338970688887788827-----99---9999997499987811110146657779999
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES-----IV---YNNKLLESGVERDDIKLETQSLDTFQNAQFS 164 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea-----~~---m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~ 164 (242)
..+++.+.+++.+..-.+. -.+++|..+......+. +. +.+++.+.|| ++.+|+......++....
T Consensus 82 ~~~~~~~~i~~A~~lG~~~---v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lE~h~~~~~~~~~~~ 155 (286)
T 3dx5_A 82 TIEKCEQLAILANWFKTNK---IRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNM---YVLLETHPNTLTDTLPST 155 (286)
T ss_dssp HHHHHHHHHHHHHHHTCCE---EEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTC---EEEEECCTTSTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCE---EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---EEEEEECCCCCCCCHHHH
T ss_conf 9999999999999809899---9986798885437099999999999999988761496---899984136155889999
Q ss_pred HHHHHHCCCCCEEEECCHHHHHHHH----HHHHHCC
Q ss_conf 9997623686408853458899999----9999769
Q gi|255764508|r 165 SSMIKNMQGKNIILVSSAYHLKRSQ----LYFQHFG 196 (242)
Q Consensus 165 ~~il~~~~~~~vilVTsa~Hm~RA~----~~f~~~g 196 (242)
.++++.-+.+++-+.=+-+||.++- ..+++.+
T Consensus 156 ~~li~~v~~p~~gl~~D~~h~~~~g~d~~~~i~~~~ 191 (286)
T 3dx5_A 156 LELLGEVDHPNLKINLDFLHIWESGADPVDSFQQLR 191 (286)
T ss_dssp HHHHHHHCCTTEEEEEEHHHHHHTTCCHHHHHHHHG
T ss_pred HHHHHHCCCCCEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 999975223436233147899873899999999866
No 40
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=49.44 E-value=6.9 Score=17.59 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHH
Q ss_conf 999999974999878111101466
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLD 156 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~n 156 (242)
..++.|++.|||+++|++--.+-.
T Consensus 81 gIa~eLv~~GVPk~dIVLgFh~P~ 104 (114)
T 2nwv_A 81 GIATELMRLGVTNNDIVLAFHPPD 104 (114)
T ss_dssp CHHHHHHHTTCCGGGEEETTSCGG
T ss_pred CHHHHHHHCCCCHHHEEEEECCCC
T ss_conf 389999984998899899306834
No 41
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=48.66 E-value=12 Score=16.09 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH---------HHHHHHHHHHCCC-CHHHHHCCHHHH
Q ss_conf 434682058999999999982520057533897068888778882---------7999999997499-987811110146
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE---------SIVYNNKLLESGV-ERDDIKLETQSL 155 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E---------a~~m~~~l~~~Gv-~~~~I~~e~~s~ 155 (242)
..++...+...+..-+++.+..+ ...|.+.|= ....|..+ |...+++|++.|+ ++++|.....+.
T Consensus 25 s~~l~~~~~~~L~~ia~~l~~~~----~~~I~I~Gh-td~~g~~~~N~~LS~~RA~aV~~~L~~~g~~~~~ri~~~g~Ge 99 (123)
T 3oon_A 25 SFQILQKEYKKIDLIAKLLEKFK----KNNILIEGH-TEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFKGWGS 99 (123)
T ss_dssp SCCBCGGGHHHHHHHHHHHHHSC----SCCEEEEEC-CCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC----CCEEEEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
T ss_conf 83279989999999999998689----956999998-1798755564799999999999999985999876899999834
No 42
>3d7q_A XISI protein-like; ZP_00106052.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.30A {Nostoc punctiforme pcc 73102}
Probab=48.17 E-value=6.6 Score=17.73 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHH
Q ss_conf 9999999749998781111014665
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDT 157 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT 157 (242)
..++.|++.|||+++|++--.+-..
T Consensus 79 gIa~eLv~~GVPk~dIVLgFh~P~~ 103 (112)
T 3d7q_A 79 DIALELMEMGIDKQDIVIGFHTPKM 103 (112)
T ss_dssp CHHHHHHTTTCCGGGEEETTSCHHH
T ss_pred HHHHHHHHCCCCHHHEEEECCCCCC
T ss_conf 2899999849988998982278120
No 43
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate guanyltransferase, structural genomics; 2.20A {Thermus thermophilus HB8} SCOP: b.81.4.1 c.68.1.20
Probab=47.87 E-value=9.8 Score=16.60 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=32.8
Q ss_pred HHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHH
Q ss_conf 9974999878111101466577799999997623686408853458899
Q gi|255764508|r 138 LLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLK 186 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~ 186 (242)
+.+...+..++++|+..+||.--...+...+.+++. ..++|.++-|.-
T Consensus 65 ~~~~~~~~~~ii~Ep~~rnTa~ai~~a~~~~~~~~~-~~vlVlpsDh~i 112 (337)
T 2cu2_A 65 VARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGA-ERLLVLPADHYV 112 (337)
T ss_dssp HHGGGCSSSEEEEESSCCHHHHHHHHHHHHHHHHTC-SEEEEEESSCEE
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEECCCCCC
T ss_conf 986442456089720577840899999998874378-715864476034
No 44
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=47.55 E-value=12 Score=15.98 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC-CCCC-CC----CCH--HHHHHHHHHHCCCCHHHHHCCHH
Q ss_conf 34682058999999999982520057533897068-8887-78----882--79999999974999878111101
Q gi|255764508|r 87 IEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGG-DPQK-HG----LAE--SIVYNNKLLESGVERDDIKLETQ 153 (242)
Q Consensus 87 ~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg-~~~~-~~----~~E--a~~m~~~l~~~Gv~~~~I~~e~~ 153 (242)
.++...+...+.+-++..++.+ +..|.+.|= +..+ .. .++ |...+++|.+.|||+++|.....
T Consensus 63 ~~l~~~~~~~L~~ia~~L~~~p----~~~i~I~GhTD~~g~~~~N~~LS~~RA~~V~~~L~~~Gv~~~ri~~~G~ 133 (169)
T 3ldt_A 63 PRLNEICYPGLNNVIRLLNFYP----QSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGY 133 (169)
T ss_dssp HHHHHHHCHHHHHHHHHHTTCT----TSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTEEECCT
T ss_pred CCCCHHHHHHHHHHHHHHHHCC----CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE
T ss_conf 4269889999999999999789----9579999973898976675779999999999999985999799899997
No 45
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=46.32 E-value=13 Score=15.85 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999749998781111014665777999999976236864088534588999999999769818998426
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
++.+..+...||++++|++.+-|..-.+.+ +.....+++++..-.|.+.+ ..++..|.+++++|.|
T Consensus 55 ~Lr~~iA~~~~v~~d~I~~t~Gs~e~i~~~------~~~~~~~~vlv~~P~y~~~~--~~~~~~g~~~~~v~~~ 120 (337)
T 3p1t_A 55 RVMRKLAEHFSCPEDNLMLVRGIDECFDRI------SAEFSSMRFVTAWPGFDGYR--ARIAVSGLRHFEIGLT 120 (337)
T ss_dssp HHHHHHHHHHTSCGGGEEEESHHHHHHHHH------HHHSTTSEEEEESSSCSHHH--HHHTTSCCEEEEECBC
T ss_pred HHHHHHHHHHCCCHHHEEECCCHHHHHHHH------HHHHCCCEEEECCCCHHHHH--HHHHHCCCEEEEEECC
T ss_conf 999999998684747599913799999999------99746997999068679999--9999819802575268
No 46
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=45.25 E-value=9.5 Score=16.69 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 9999999749998781111014665777999999976236864088534
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS 181 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs 181 (242)
.-..++..+||+.++++.-+- +|.|++....+-+-+.+...+++|-|
T Consensus 103 ~~~~~~~~~GvD~~~l~~~~p--~~~E~~l~i~e~l~~~~~~~~iViDS 149 (356)
T 1u94_A 103 LDPIYARKLGVDIDNLLCSQP--DTGEQALEICDALARSGAVDVIVVDS 149 (356)
T ss_dssp CCHHHHHHTTCCGGGCEEECC--SSHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCHHHHHHCCCCHHHEEEECC--CCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 799999983998678699778--86999999999998469975899946
No 47
>3d6k_A Putative aminotransferase; APC82464, structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=44.87 E-value=13 Score=15.71 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=5.1
Q ss_pred HHHHCCCEEEEEEC
Q ss_conf 99976981899842
Q gi|255764508|r 191 YFQHFGINTKASCS 204 (242)
Q Consensus 191 ~f~~~gi~~~p~~~ 204 (242)
.++..|.+++++|.
T Consensus 147 ~~~~~G~~~v~vp~ 160 (422)
T 3d6k_A 147 ITEHFGFEMINVPM 160 (422)
T ss_dssp HHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
T ss_conf 99986998999740
No 48
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=44.17 E-value=14 Score=15.64 Aligned_cols=133 Identities=9% Similarity=0.047 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCH-HHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 058999999999982520057533897068888778882799999999749998-7811110146657779999999762
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVER-DDIKLETQSLDTFQNAQFSSSMIKN 170 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~-~~I~~e~~s~nT~ena~~~~~il~~ 170 (242)
.+..++..|++..+.-..+ ..+++-|+.... ....++++...|.+- ..=|+-..=+|. +...
T Consensus 86 kT~~~L~~A~~~i~~i~~~---~~ilfV~tk~~~-----~~~i~k~A~~~g~~yv~~RWlgGtLTN~---------~~~~ 148 (253)
T 3bch_A 86 RTWEKLLLAARAIVAIENP---ADVSVISSRNTG-----QRAVLKFAAATGATPIAGRFTPGTFTNQ---------IQAA 148 (253)
T ss_dssp HHHHHHHHHHHHHHTCSSG---GGEEEEECSHHH-----HHHHHHHHHHHCCEEEESCCCTTTTTCC---------SCST
T ss_pred HHHHHHHHHHHHHHHHHCC---CCEEEEECCHHH-----HHHHHHHHHHHCCCEECCCCCCCCCCHH---------HHHH
T ss_conf 9999999999999997489---938999755788-----9999999999789303466678741205---------6650
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 368640885345889999999997698189984-2664431-1137545788989999999999999998648
Q gi|255764508|r 171 MQGKNIILVSSAYHLKRSQLYFQHFGINTKASC-SDYLNAY-YSIIPLSANFYLTELALKEYIGILIAYYRGN 241 (242)
Q Consensus 171 ~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~-~d~~~~~-~~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~ 241 (242)
....++++|+++..-.-|...+.+.||.+++.. ||-.+.. ...+|..+.-..+-.++...++--+.+.||.
T Consensus 149 ~~~PdliiV~dp~~d~~AI~EA~kl~IPvIgivDTn~dp~~VdypIP~NDdS~kSI~Li~~lLa~ail~~kg~ 221 (253)
T 3bch_A 149 FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGT 221 (253)
T ss_dssp TCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4578635886237743776778764997798724899954476577578844889999999999999997077
No 49
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=43.64 E-value=14 Score=15.59 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=36.1
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH---HHHHHHHHHCC
Q ss_conf 758999625213777765554346820589999999999825200575338970688887788827---99999999749
Q gi|255764508|r 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES---IVYNNKLLESG 142 (242)
Q Consensus 66 ~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea---~~m~~~l~~~G 142 (242)
..-|||+|||.. =-..|+.|.|..+ ++.+..+|=|. ..+-.++-|+ ..+..++..+|
T Consensus 25 i~kVvIVGgG~A------------------G~~tAa~Lar~~~-~~~~VtlIEs~-~iP~igVGESt~P~~~~~l~~~lG 84 (550)
T 2e4g_A 25 IDKILIVGGGTA------------------GWMAASYLGKALQ-GTADITLLQAP-DIPTLGVGEATIPNLQTAFFDFLG 84 (550)
T ss_dssp CCEEEEECCSHH------------------HHHHHHHHHHHTT-TSSEEEEEECC-CCCCCCCCEECCTHHHHHTHHHHT
T ss_pred CCEEEEECCCHH------------------HHHHHHHHHHHCC-CCCEEEEEECC-CCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 467999898789------------------9999999998659-99879999799-989847351177999999999849
Q ss_pred CCHHHHH
Q ss_conf 9987811
Q gi|255764508|r 143 VERDDIK 149 (242)
Q Consensus 143 v~~~~I~ 149 (242)
|++..-+
T Consensus 85 i~e~~fm 91 (550)
T 2e4g_A 85 IPEDEWM 91 (550)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
T ss_conf 9989999
No 50
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=43.54 E-value=14 Score=15.58 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=52.3
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHH-HHHHHHHHHHCCCCCE
Q ss_conf 999999982520057533897068888778882799999999749998781111014665777-9999999762368640
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQN-AQFSSSMIKNMQGKNI 176 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~en-a~~~~~il~~~~~~~v 176 (242)
..+-.|++.|..+ +.+-++............-+..+.+.+.+...+........+.++ .....++++++...+.
T Consensus 168 ~a~~~L~~~G~r~-----i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 242 (339)
T 3h5o_A 168 AITRHLLSRGKRR-----IGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDA 242 (339)
T ss_dssp HHHHHHHHTTCCS-----EEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHCCCCE-----EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 9999999769974-----99852777520568889999999974897678600036623777788899999846999838
Q ss_pred EEECCHHHHHHHHHHHHHCCCE
Q ss_conf 8853458899999999976981
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
++++++.--.-+...++..|+.
T Consensus 243 i~~~~d~~a~g~~~al~~~gl~ 264 (339)
T 3h5o_A 243 LFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp EEESSHHHHHHHHHHHHHTTCC
T ss_pred EEECCHHHHHHHHHHHHHCCCC
T ss_conf 9975729999987899982999
No 51
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1}
Probab=41.96 E-value=15 Score=15.42 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=52.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882-79999999974999878111101466577799-999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vi 177 (242)
+-.|.++|.. +|.+-|+... ....| -+...+.+.+.|++.+....... .+.++.. ..+++++.....+.+
T Consensus 118 ~~~l~~~G~~-----~i~~i~~~~~-~~~~~r~~gf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai 189 (289)
T 3k9c_A 118 VDHLTELGHR-----NIAHIDGADA-PGGADRRAGFLAAMDRHGLSASATVVTGG--TTETEGAEGMHTLLEMPTPPTAV 189 (289)
T ss_dssp HHHHHHTTCC-----SEEEECCTTS-TTHHHHHHHHHHHHHHTTCGGGEEEECCC--SSHHHHHHHHHHHHTSSSCCSEE
T ss_pred HHHHHHHCCC-----CEEECCCCCC-CHHHHHHHHHHHHHHHCCCCCCCCEECCC--CCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999871887-----4144258766-31577888777899981999772211155--65677999999999734586601
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+++++.-...++..+++.|++
T Consensus 190 ~~~~d~~A~g~~~~l~~~g~~ 210 (289)
T 3k9c_A 190 VAFNDRCATGVLDLLVRSGRD 210 (289)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 214589999999999985999
No 52
>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12}
Probab=41.72 E-value=15 Score=15.40 Aligned_cols=63 Identities=6% Similarity=-0.083 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 999999974999878111101466577799-999997623686408853458899999999976981
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
..++.+.+.|+....+...+- +.+.+. ...++++.+...+.++++++....-+...+++.|++
T Consensus 159 gf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 222 (293)
T 2iks_A 159 GFRTAWKDDPREVHFLYANSY---EREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGK 222 (293)
T ss_dssp HHHHHHTTCCCCEEEEEESSS---CHHHHHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCCCCEEECCCCCC---HHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 999999976986012111011---0577889999876315787431148889999999999983999
No 53
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=40.53 E-value=16 Score=15.28 Aligned_cols=91 Identities=11% Similarity=-0.001 Sum_probs=54.0
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEEE
Q ss_conf 999982520057533897068888778882-7999999997499987811110146657779-99999976236864088
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vil 178 (242)
-.|++.|.. +|.+-+|........+ -+..++.+.+.|++...+.. +..+.++. ....++++.+.....++
T Consensus 172 ~~L~~~G~r-----rI~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~ai~ 243 (349)
T 1jye_A 172 EHLVALGHQ-----QIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAERE---GDWSAMSGFQQTMQMLNEGIVPTAML 243 (349)
T ss_dssp HHHHHHTCC-----SEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEE---CCSSHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHCCCC-----EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE---CCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 999981897-----4899527743228999899999999975999751563---57646558999999972599983564
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+++++...-+...+++.|+++
T Consensus 244 ~~~d~~A~g~~~~l~~~g~~v 264 (349)
T 1jye_A 244 VANDQMALGAMRAITESGLRV 264 (349)
T ss_dssp ESSHHHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 388499999999999818978
No 54
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=40.52 E-value=16 Score=15.28 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=8.1
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 68758999625213
Q gi|255764508|r 64 KDGNIIVLLGNGTT 77 (242)
Q Consensus 64 ~~~d~IVVLGgG~~ 77 (242)
.+.|.||.+|||..
T Consensus 85 ~~~D~IvavGGGs~ 98 (370)
T 1jq5_A 85 AEAAIVIGVGGGKT 98 (370)
T ss_dssp TTCSEEEEEESHHH
T ss_pred CCCCEEEECCCCCC
T ss_conf 48878997378630
No 55
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=39.98 E-value=2.3 Score=20.66 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=44.1
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 8970688887788827999999997499987811---110146657779999999762368640885345
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSA 182 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa 182 (242)
++++.|.|.+.|..-+...++.+.++|+..=.|. ++.++....++|...-+-|++. .+.+++|.+.
T Consensus 99 vfi~aG~GGGTGtGaapviA~~Ake~g~l~v~ivt~PF~~Eg~~r~~~A~~gl~~L~~~-~Ds~Ivi~Nd 167 (382)
T 1rq2_A 99 VFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRES-CDTLIVIPND 167 (382)
T ss_dssp EEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHH-CSEEEEEEHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHH
T ss_conf 99995158986653789999999984995899995887875178999999999999975-7949995266
No 56
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=39.97 E-value=16 Score=15.23 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=47.2
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEEEE
Q ss_conf 99982520057533897068888778882-7999999997499987811110146657779-999999762368640885
Q gi|255764508|r 102 RLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNIILV 179 (242)
Q Consensus 102 ~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vilV 179 (242)
.|+..|.. +|.+-++........+ -+..++.+.+.|++....... ...++.|.+ ....+++++......+++
T Consensus 121 ~L~~~g~~-----~I~~i~~~~~~~~~~~R~~Gf~~a~~~~gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 194 (288)
T 3gv0_A 121 RLAQCGRK-----RIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAV-TIETPLEKIRDFGQRLMQSSDRPDGIVS 194 (288)
T ss_dssp HHHHTTCC-----EEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSC-CTTSCHHHHHHHHHHHTTSSSCCSEEEE
T ss_pred HHHHCCCC-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHC-CCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99862996-----08996487543238788899999999839985623311-3310023678999998642257752344
Q ss_pred CCHHHHHHHHHHHHHCCCE
Q ss_conf 3458899999999976981
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~ 198 (242)
+++.-...++..++..|++
T Consensus 195 ~~d~~a~~~~~~l~~~g~~ 213 (288)
T 3gv0_A 195 ISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp SCHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCCCC
T ss_conf 6669999999999984998
No 57
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=39.34 E-value=16 Score=15.16 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC-C--CCCCC-------CCH--HHHHHHHHHHCCCCHHHHHCCHHHH--
Q ss_conf 82058999999999982520057533897068-8--88778-------882--7999999997499987811110146--
Q gi|255764508|r 90 SFQSYSRIFETMRLYKSCKQHSMHCTIIISGG-D--PQKHG-------LAE--SIVYNNKLLESGVERDDIKLETQSL-- 155 (242)
Q Consensus 90 ~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg-~--~~~~~-------~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~-- 155 (242)
+.++..-+..-+++.+..+.. ..|.+.|= + +...+ .++ |..++++|++.||++++|..+..+.
T Consensus 16 ~~~~~~~L~~ia~~l~~~p~~---~~I~I~GhTD~~~~~~~~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~G~~~ 92 (138)
T 3cyp_B 16 NQDMMLYIERIAKIIQKLPKR---VHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTN 92 (138)
T ss_dssp CHHHHHHHHHHHHHHTTSCTT---CEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTTCS
T ss_pred CHHHHHHHHHHHHHHHHCCCC---EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 998999999999999968997---07999885289887777617799999999999999999859996436882100137
Q ss_pred -----HHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf -----65777999999976236864088534588999999999
Q gi|255764508|r 156 -----DTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 156 -----nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~ 193 (242)
+|.+. ...++.. .+++.++.-...+-..+..
T Consensus 93 P~~~n~~~~~------~a~NRRV-EI~i~~~~~~~~~~~sild 128 (138)
T 3cyp_B 93 PIAPNDSLEN------RMKNNRV-EIFFSTDANDLSKIHSILD 128 (138)
T ss_dssp CSSCTTSHHH------HHHHSEE-EEEEEEEHHHHHHHHHHHH
T ss_pred CCCCCCCHHH------HHHCCCE-EEEEECCHHHHHHHHHHCC
T ss_conf 5799939789------9873988-9999768678778886504
No 58
>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=37.86 E-value=17 Score=15.02 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=57.6
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-----HHHHHHHHHHH
Q ss_conf 7589996252137777655543468205899999999998252005753389706888877888-----27999999997
Q gi|255764508|r 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLA-----ESIVYNNKLLE 140 (242)
Q Consensus 66 ~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~-----Ea~~m~~~l~~ 140 (242)
..-|++.|.|... ..=...+.++...+..+....+-++.||+....... ..+...+.+.+
T Consensus 71 gGri~~~G~GtSG---------------~la~~~a~e~~~tf~~~~~~~~~~iaggd~al~~~~e~~ed~~~~~~~~~~~ 135 (306)
T 1nri_A 71 GGRLIYIGAGTSG---------------RLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKAVLNDLQS 135 (306)
T ss_dssp TCCEEEEESHHHH---------------HHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTHHHHHHHH
T ss_pred CCEEEEECCCCHH---------------HHHHHHHHHHCCCCCCCHHHCCHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9859997687239---------------9999999986465689822130002679388765665124648899999999
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
Q ss_conf 49998781111014665777999999976236864088534588999
Q gi|255764508|r 141 SGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKR 187 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~R 187 (242)
.++.++++++-=.+-.+-.|.....+..++.+.. .+.+|+..+-+-
T Consensus 136 ~~i~~~DvvI~IS~SG~tp~vi~al~~Ak~~G~~-ti~it~~~~s~l 181 (306)
T 1nri_A 136 IHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGAL-TISIASNPKSEM 181 (306)
T ss_dssp TTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCE-EEEEESSTTCHH
T ss_pred HCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC
T ss_conf 5799888489996899964579999999972686-699976887510
No 59
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=37.62 E-value=17 Score=14.99 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=14.2
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 40885345889999999997698189
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
-.+|+-+..+...-...+++.|+.+.
T Consensus 345 iavL~r~~~~~~~~~~~L~~~~Ip~~ 370 (673)
T 1uaa_A 345 YAILYRGNHQSRVFEKFLMQNRIPYK 370 (673)
T ss_dssp EEEEESSSGGGTTHHHHHHHTTCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 45410021448999999997799889
No 60
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=37.44 E-value=17 Score=14.97 Aligned_cols=83 Identities=14% Similarity=0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCC-----CCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999982520057533897068888-----77888279999999974999878111101466577799999997623
Q gi|255764508|r 97 IFETMRLYKSCKQHSMHCTIIISGGDPQ-----KHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNM 171 (242)
Q Consensus 97 l~~a~~L~~~~~~~~~~~~ii~SGg~~~-----~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~ 171 (242)
..-+.++.+.+...+...+.+.-+++.. .+...-.+...+++...+-|.+-++.-..|- +-+|.....+..+++
T Consensus 58 ~h~a~~~~~~~~~~~~~~~~i~l~~~~~~~ta~~nd~~~~~~f~~ql~~~~~~gDvlI~iS~SG-~s~nii~a~~~Ak~~ 136 (188)
T 1tk9_A 58 QHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNEKDVLIGISTSG-KSPNVLEALKKAKEL 136 (188)
T ss_dssp HHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCCTTCEEEEECSSS-CCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHC
T ss_conf 9999984588645653222214678732223312458989999999998378999899982899-995577899999987
Q ss_pred CCCCEEEECC
Q ss_conf 6864088534
Q gi|255764508|r 172 QGKNIILVSS 181 (242)
Q Consensus 172 ~~~~vilVTs 181 (242)
|.+ ++.+|.
T Consensus 137 g~~-~i~ltg 145 (188)
T 1tk9_A 137 NML-CLGLSG 145 (188)
T ss_dssp TCE-EEEEEE
T ss_pred CCE-EEEEEC
T ss_conf 998-999957
No 61
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=37.12 E-value=18 Score=14.94 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=16.8
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 40885345889999999997698189984
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGINTKASC 203 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~~~p~~ 203 (242)
-+.|++..+ .|=|.+++.|.|+++.+.-
T Consensus 182 ~l~LlSGGi-SpVAa~~~mKRG~~v~~v~ 209 (307)
T 1vbk_A 182 MIGILHDEL-SALAIFLMMKRGVEVIPVY 209 (307)
T ss_dssp EEEECSSHH-HHHHHHHHHHBTCEEEEEE
T ss_pred EEEEECCCC-CHHHHHHHHHCCCEEEEEE
T ss_conf 589833773-0999999996698899999
No 62
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=36.64 E-value=6.2 Score=17.90 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
Q ss_conf 75338970688887788827999999997499987811---110146657779999999762368640885345889
Q gi|255764508|r 112 MHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHL 185 (242)
Q Consensus 112 ~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm 185 (242)
.+. ++++.|.|.+.|..-+..+++.+.++|+..=.|+ ++.+++.-.++|...-+-|++. .+.+++|.+.--+
T Consensus 96 ~d~-vfi~aGlGGGTGtgaapvia~~ake~g~l~v~ivt~PF~~Eg~~r~~~A~~gl~~L~~~-~D~~Ivi~Nd~l~ 170 (382)
T 2vxy_A 96 ADM-VFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEA-VDTLIVIPNDRIL 170 (382)
T ss_dssp CSE-EEEEEESSSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHH-CSEEEEEEHHHHH
T ss_pred CCE-EEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEECHHHH
T ss_conf 887-99995478887776068999999976991899995664443599999999999999860-9679998807988
No 63
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=36.43 E-value=18 Score=14.87 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHH-HHHHHHHHHHH
Q ss_conf 05899999999998252005753389706888877888279999999974999878111101466577-79999999762
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQ-NAQFSSSMIKN 170 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~e-na~~~~~il~~ 170 (242)
.+++|+.+|++- +-+|++-| +-.-+|++-+.+|.++|.++|.+.+ ..+=++-..-|. |.....+.. +
T Consensus 60 ~Av~ri~~Ai~~---------~ekI~I~G-DYDvDGiTStaIL~~~L~~lg~~v~-~yIP~R~~eGYGl~~~~i~~~~-e 127 (666)
T 2zxr_A 60 EAAALLEEALRQ---------GKRIRVHG-DYDADGLTGTAILVRGLAALGADVH-PFIPHRLEEGYGVLMERVPEHL-E 127 (666)
T ss_dssp HHHHHHHHHHHT---------TCEEEEEC-CSSHHHHHHHHHHHHHHHHTTCEEE-ECCC--------------------
T ss_pred HHHHHHHHHHHC---------CCEEEEEE-ECCCCHHHHHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCHHHHHHHH-H
T ss_conf 999999999976---------99899997-4684168999999999998899659-9888976568886999999986-0
Q ss_pred CCCCCEEEEC--CHHHHHHHHHHHHHCCCEEE
Q ss_conf 3686408853--45889999999997698189
Q gi|255764508|r 171 MQGKNIILVS--SAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 171 ~~~~~vilVT--sa~Hm~RA~~~f~~~gi~~~ 200 (242)
+.+ ++|| ..--..-+...++..|++++
T Consensus 128 -g~~--LiITvDcGi~a~e~i~~a~~~GidvI 156 (666)
T 2zxr_A 128 -ASD--LFLTVDCGITNHAELRELLENGVEVI 156 (666)
T ss_dssp --CC--EEEESCCC--------------CEEE
T ss_pred -CCC--EEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf -899--89996488233999998886799899
No 64
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=36.00 E-value=18 Score=14.90 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=32.8
Q ss_pred HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHH
Q ss_conf 99999749998781111014665777999999976236864088534588
Q gi|255764508|r 135 NNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYH 184 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~H 184 (242)
.+++..+||+.++++.-.- +|.|++....+.+-+.+...+++|-|.-.
T Consensus 116 ~~~a~~~Gvd~d~l~v~~~--~~~E~~l~i~~~li~~~~~~liVvDSv~a 163 (366)
T 1xp8_A 116 PVYARALGVNTDELLVSQP--DNGEQALEIMELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHHHTTCCGGGCEEECC--SSHHHHHHHHHHHHTTTCCSEEEEECTTT
T ss_pred HHHHHHHCCCHHHEEEECC--CCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9999971898110799658--99999999999998658972999957444
No 65
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=35.51 E-value=19 Score=14.78 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=9.7
Q ss_pred EEEECCHHHHHHHHHHHHHCCC
Q ss_conf 0885345889999999997698
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGI 197 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi 197 (242)
..+++..+|.+-.++.-...++
T Consensus 230 elI~~~~~~~RK~~fv~~SdAf 251 (462)
T 3gh1_A 230 ELVIMPDIEKRLEAFVRMAHGI 251 (462)
T ss_dssp EEEECSSHHHHHHHHHHHCSEE
T ss_pred CEEECCCHHHHHHHHHHHCCEE
T ss_conf 0266076799999999867889
No 66
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=35.32 E-value=19 Score=14.76 Aligned_cols=132 Identities=16% Similarity=0.106 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0589999999999825200575338970688887788827999999997499987-811110146657779999999762
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERD-DIKLETQSLDTFQNAQFSSSMIKN 170 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~-~I~~e~~s~nT~ena~~~~~il~~ 170 (242)
.+..++..|++..+.... ..+++-|..... ....++++...|.+-= .=|+.. |..| .+...
T Consensus 51 kT~~~L~~A~~fl~~~~~----~~ILfVgtk~~~-----~~~v~~~A~~~g~~yv~~rWlgG----~LTN-----~~~~~ 112 (208)
T 1vi6_A 51 KLDERIRVAAKFLSRYEP----SKILLVAARQYA-----HKPVQMFSKVVGSDYIVGRFIPG----TLTN-----PMLSE 112 (208)
T ss_dssp HHHHHHHHHHHHHTTSCG----GGEEEEECSGGG-----HHHHHHHHHHHCCEEEESSCCTT----TTTC-----TTSTT
T ss_pred HHHHHHHHHHHHHHHCCC----CCEEEEECCHHH-----HHHHHHHHHHCCCCCCCCCCCCC----CCCC-----HHHHH
T ss_conf 999999999999985567----727998345889-----99999999864687544645677----5446-----67774
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE-CCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 368640885345889999999997698189984-266443-11137545788989999999999999998648
Q gi|255764508|r 171 MQGKNIILVSSAYHLKRSQLYFQHFGINTKASC-SDYLNA-YYSIIPLSANFYLTELALKEYIGILIAYYRGN 241 (242)
Q Consensus 171 ~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~-~d~~~~-~~~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~ 241 (242)
.....+++|+++-.-.-|...+.+.|+.+++.. ||-.+. ....+|..+.-..+-.++...++.-+.+.||.
T Consensus 113 ~~~P~~viv~dp~~d~~ai~Ea~~l~IP~I~ivDTn~~p~~vdypIP~Ndds~~Si~li~~lL~~ai~~~k~~ 185 (208)
T 1vi6_A 113 YREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQ 185 (208)
T ss_dssp CCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1467660777677537999999980996588724999811188788688863879999999999999998198
No 67
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=34.96 E-value=19 Score=14.72 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH-----HH---HHHHHHHCCCCHHHHHCCHHHH-----HHH
Q ss_conf 0589999999999825200575338970688887788827-----99---9999997499987811110146-----657
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES-----IV---YNNKLLESGVERDDIKLETQSL-----DTF 158 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea-----~~---m~~~l~~~Gv~~~~I~~e~~s~-----nT~ 158 (242)
.+.+++.+.+++.+.--.+. -++.+|+.+......+. +. +.+++.+.|| +|.+|+.+. +|.
T Consensus 81 ~~~~~~~~~i~~a~~lG~~~---i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l~iE~~~~~~~~~~~~ 154 (278)
T 1i60_A 81 EIITEFKGMMETCKTLGVKY---VVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGV---KIALEFVGHPQCTVNTF 154 (278)
T ss_dssp HHHHHHHHHHHHHHHHTCCE---EEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTC---EEEEECCCCTTBSSCSH
T ss_pred HHHHHHHHHHHHHHHCCCCC---EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC---CEEEEECCCCCCCCCCH
T ss_conf 99999999999999839996---0458898877789899999999999999999986198---44898434577625888
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf 7799999997623686408853458899999
Q gi|255764508|r 159 QNAQFSSSMIKNMQGKNIILVSSAYHLKRSQ 189 (242)
Q Consensus 159 ena~~~~~il~~~~~~~vilVTsa~Hm~RA~ 189 (242)
+++. +++++-+.+++-+.=+..||.++-
T Consensus 155 ~~~~---~li~~~~~~~vg~~~D~~h~~~~~ 182 (278)
T 1i60_A 155 EQAY---EIVNTVNRDNVGLVLDSFHFHAMG 182 (278)
T ss_dssp HHHH---HHHHHHCCTTEEEEEEHHHHHHTT
T ss_pred HHHH---HHHHHHHHCCCCEEECHHHHHHCC
T ss_conf 9977---899875220123020558876469
No 68
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=34.90 E-value=17 Score=15.08 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=11.5
Q ss_pred CEEEECCHHHHHHHHHHHHHCC
Q ss_conf 4088534588999999999769
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFG 196 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~g 196 (242)
...++|..+|.+...+.-..-+
T Consensus 113 ~~~i~~~~~~~Rk~~m~~~sDa 134 (217)
T 1wek_A 113 THALSLRYFFVRKVLFVRYAVG 134 (217)
T ss_dssp SEEEEESCHHHHHHHHHHTEEE
T ss_pred CEEEECCCHHHHHHHHHHCCCE
T ss_conf 2157527599998999862976
No 69
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=34.69 E-value=19 Score=14.69 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=30.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 781111014665777999999976236864088534588999999999769818998426
Q gi|255764508|r 146 DDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 146 ~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
+-++.-..|.+|. +.....+.++++|. ++++||+.-.-| +.+...+ +..+|++
T Consensus 91 DvvI~iS~sG~t~-~~~~~~~~ak~~g~-~vI~IT~~~~s~----L~~~ad~-~l~~~~~ 143 (200)
T 1vim_A 91 DVLVGISGSGETT-SVVNISKKAKDIGS-KLVAVTGKRDSS----LAKMADV-VMVVKGK 143 (200)
T ss_dssp CEEEEECSSSCCH-HHHHHHHHHHHHTC-EEEEEESCTTSH----HHHHCSE-EEECCSS
T ss_pred CEEEEECCCCCCC-CHHHHHHHHHHCCC-EEEEEECCCCCH----HHHHCCE-EEEECCC
T ss_conf 9899857997742-16999999998799-699997999997----8995999-9993898
No 70
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.05 E-value=20 Score=14.63 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=44.3
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 999999974999878111101466577799999997623686408853458899999999976981
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
..++.+.+.|.+.. ...+.++.+......+.+.+.+....++++++....-+...+++.|++
T Consensus 195 g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 256 (333)
T 3jvd_A 195 GISHAASIYGAEVT----FHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHHTTCEEE----EEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCE----EEECCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 99999997599732----652455202178889999627998743107999999999999984999
No 71
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=33.82 E-value=20 Score=14.60 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC-HHHHHHHHH
Q ss_conf 99999749998781111014665777999999976236864088534-588999999
Q gi|255764508|r 135 NNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS-AYHLKRSQL 190 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs-a~Hm~RA~~ 190 (242)
-+|+.++||+.++.+. .+ -+|.|.|.+..+.|...+-=.+++|-| |--.|||..
T Consensus 1469 P~YAkKLGVdtD~LLv-SQ-PDTGEQALEI~DmLiRSgAIdIiViDSVAALVPrAEI 1523 (2050)
T 3cmu_A 1469 PIYARKLGVDIDNLLC-SQ-PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 1523 (2050)
T ss_dssp HHHHHHTTCCTTTCEE-EC-CSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHH
T ss_pred HHHHHHCCCCHHHHHC-CC-CCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCCHHHH
T ss_conf 7789871987578510-48-9827999999999976388668998105440767663
No 72
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=33.39 E-value=20 Score=14.56 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=48.7
Q ss_pred CCCHHHHHC--CHHHHHHHHHHHHHHHHHHHCCCCCEE----------EECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 999878111--101466577799999997623686408----------85345889999999997698189984266
Q gi|255764508|r 142 GVERDDIKL--ETQSLDTFQNAQFSSSMIKNMQGKNII----------LVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 142 Gv~~~~I~~--e~~s~nT~ena~~~~~il~~~~~~~vi----------lVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
-++.+++.+ -+.+-.|.|+|+.++++.++-+..+++ |--+++-...|-...-+.|++|-||-+|.
T Consensus 60 ~i~~~~~~~LPNTAGc~tA~EAVr~A~lARE~~~t~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlpY~~~D 136 (264)
T 1xm3_A 60 QLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDD 136 (264)
T ss_dssp TCCGGGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 75006848746442557899999999999974499768999548987759884789999999997898799960789
No 73
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*
Probab=33.23 E-value=5.5 Score=18.26 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=40.0
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
Q ss_conf 8970688887788827999999997499987811---1101466577799999997623686408853458
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAY 183 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~ 183 (242)
++++.|.|.+.|..-+...++.+.++|+..=.|. ++.++....++|...-+-+++. .+.++++-++-
T Consensus 125 vfi~AGlGGGTGTGaapviA~~ake~g~l~v~ivt~PF~~EG~~r~~~A~~gl~~L~~~-~D~lIvi~Nd~ 194 (364)
T 2vap_A 125 VFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQH-TDTLVVIPNEK 194 (364)
T ss_dssp EEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHTT-CSEEEEEEGGG
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_conf 99996138987765788999999975991699997281204617999999999999974-68269950678
No 74
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=32.93 E-value=21 Score=14.51 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 14665777999999976236
Q gi|255764508|r 153 QSLDTFQNAQFSSSMIKNMQ 172 (242)
Q Consensus 153 ~s~nT~ena~~~~~il~~~~ 172 (242)
+++-+.....+..++.++++
T Consensus 145 t~tG~~~pi~~i~~l~~~~g 164 (392)
T 2z9v_A 145 TPSGTINPIDAIGALVSAHG 164 (392)
T ss_dssp GGGTEECCHHHHHHHHHHTT
T ss_pred CCCCEECCHHHHHHHHHHCC
T ss_conf 66744436788755677539
No 75
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=32.34 E-value=3.6 Score=19.42 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=11.9
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 338970688887788827999999997499987
Q gi|255764508|r 114 CTIIISGGDPQKHGLAESIVYNNKLLESGVERD 146 (242)
Q Consensus 114 ~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~ 146 (242)
.++++.|.... ++.-|+.+...+.+.|++.+
T Consensus 283 ~riV~~GAGaA--gigia~ll~~~~~~~Gls~~ 313 (555)
T 1gq2_A 283 HTVLFQGAGEA--ALGIANLIVMAMQKEGVSKE 313 (555)
T ss_dssp CCEEEECCSHH--HHHHHHHHHHHHHHHTCCHH
T ss_pred CEEEEECCCHH--HHHHHHHHHHHHHHCCCCHH
T ss_conf 07999666379--99999999999886499755
No 76
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.77 E-value=21 Score=14.39 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 9999999974999878111101466577799-999997623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+..++.+.+.|++.+...... ...+.+... ....+++.....+.++.+++.--..+...+++.|+.
T Consensus 206 ~gf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~A~~~~~~l~~~gl~ 272 (344)
T 3kjx_A 206 EGFTEVLGKNGVEIEDREFYS-GGSALAKGREMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp HHHHHHHHHTTCCCSCEEECS-SCCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCCCEECC-CCCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 999999997299655530013-7742224302456675158643011138889999999999986999
No 77
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=31.39 E-value=22 Score=14.35 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|++.|.. ++.+-++........+ .+..++.+.+.+.+....... .+.+..+......+.+.+....+.+
T Consensus 116 a~~~l~~~G~~-----~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ai 189 (290)
T 3clk_A 116 ATNLLINEGHR-----QIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIK-PGDYSYTSGEQAMKAFGKNTDLTGI 189 (290)
T ss_dssp HHHHHHTTTCC-----SEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEE-CCCSSHHHHHHHHHHHCTTCCCSEE
T ss_pred HHHHHHHCCCC-----EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99889865995-----69997177554226777799999999859986632245-6751565699999975223311044
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+++++.....+...+++.|+.
T Consensus 190 ~~~~d~~a~~~~~~l~~~gl~ 210 (290)
T 3clk_A 190 IAASDMTAIGILNQASSFGIE 210 (290)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHCHHHHHHHHHCC
T ss_conf 147767653438999874056
No 78
>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583}
Probab=30.72 E-value=22 Score=14.28 Aligned_cols=92 Identities=10% Similarity=0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-HHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH-C-CCC
Q ss_conf 99999998252005753389706888877888-27999999997499987811110146657779999999762-3-686
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLA-ESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKN-M-QGK 174 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~-Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~-~-~~~ 174 (242)
..+-.|++.|..+ ..+++| ........ --+..++.+.+.|++.. ++..+ .+.+.+......+.. . ...
T Consensus 108 ~~~~~l~~~G~~~----i~~i~~-~~~~~~~~~R~~gf~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~ 178 (277)
T 3cs3_A 108 QAIEQFVNVGSKK----VLLLSG-PEKGYDSQERLAVSTRELTRFGIPYE-IIQGD---FTEPSGYAAAKKILSQPQTEP 178 (277)
T ss_dssp HHHHHHHHTTCSC----EEEEEC-CTTSHHHHHHHHHHHHHHHHTTCCEE-EEECC---SSHHHHHHHHHHHTTSCCCSS
T ss_pred HHHHHHHHCCCCE----EEEECC-CCCCCHHHHHHHHHHHHHHHCCCCCE-EECCC---CCCCHHHHHHHHHHHCCCCCC
T ss_conf 9999999739814----888517-87652288887889999998399720-21022---220048999999863367887
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 408853458899999999976981
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.++.+++.....++..+++.|+.
T Consensus 179 ~ai~~~~d~~A~gv~~~l~~~g~~ 202 (277)
T 3cs3_A 179 VDVFAFNDEMAIGVYKYVAETNYQ 202 (277)
T ss_dssp EEEEESSHHHHHHHHHHHTTSSCC
T ss_pred EEEEECCHHHHHCHHHHHHHCCCC
T ss_conf 078717878863558999974998
No 79
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=30.70 E-value=22 Score=14.27 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=27.7
Q ss_pred HHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9997623686408853458899999999976981899
Q gi|255764508|r 165 SSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 165 ~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p 201 (242)
.+.+++.|.+++.+.|+ -+.++|...+++.|+...+
T Consensus 94 ~~~~~~~g~~~i~l~~~-~~N~~a~~~y~k~GF~~~~ 129 (157)
T 1mk4_A 94 IETVKQRGCTRVKCVTS-PVNKVSIAYHTKLGFDIEK 129 (157)
T ss_dssp HHHHHTTTCCEEEEEEC-TTCHHHHHHHHHTTCEECC
T ss_pred HHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCCEEEE
T ss_conf 99999879989999992-8989999999988999940
No 80
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=30.42 E-value=19 Score=14.68 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 8778882799999999749998
Q gi|255764508|r 124 QKHGLAESIVYNNKLLESGVER 145 (242)
Q Consensus 124 ~~~~~~Ea~~m~~~l~~~Gv~~ 145 (242)
+.....||+.+.+.|.+.|++.
T Consensus 52 pf~~~~~A~~~~~~L~~~G~~~ 73 (81)
T 1uta_A 52 PVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp SCBTTTHHHHHHHHHHHHCCSC
T ss_pred CCCCHHHHHHHHHHHHHCCCCC
T ss_conf 7399999999999999879998
No 81
>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.49.1.2
Probab=30.14 E-value=23 Score=14.21 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHH
Q ss_conf 999999997499987811110146657779
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNA 161 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena 161 (242)
+-+++.|.+.|+. |+.-....+-.|-+
T Consensus 88 ~e~~~~L~~~G~~---V~t~tH~lsG~eR~ 114 (201)
T 1vp8_A 88 PEVEEELRKRGAK---IVRQSHILSGLERS 114 (201)
T ss_dssp HHHHHHHHHTTCE---EEECCCTTTTTHHH
T ss_pred HHHHHHHHHCCCE---EEEECCCCCCCHHH
T ss_conf 9999999977988---99951433430466
No 82
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=30.12 E-value=23 Score=14.21 Aligned_cols=65 Identities=8% Similarity=0.040 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 999999997499987811110146657779999999762368640885345889999999997698189984266
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+.+++++...++++++|++-+-+.. +.+. ++.. .+++++.+-.|.+.+. .++..|.+++++|.|.
T Consensus 63 eaia~~~~~~~~~~~~I~vt~G~~~----~l~~--l~~~--~d~v~i~~P~Y~~~~~--~~~~~g~~~~~v~~~~ 127 (335)
T 1uu1_A 63 EKILSYLDTDFLSKNNVSVGNGADE----IIYV--MMLM--FDRSVFFPPTYSCYRI--FAKAVGAKFLEVPLTK 127 (335)
T ss_dssp HHHHHHHTCSSCCGGGEEEESSHHH----HHHH--HHHH--SSEEEECSSSCHHHHH--HHHHHTCEEEECCCCT
T ss_pred HHHHHHHCCCCCCHHEEEECCCHHH----HHHH--HHHC--CCCEEEECCCCCHHHH--HHHHCCCEEEEECCCC
T ss_conf 9999985765988315998778899----9999--9974--9968995883420255--6886497788734202
No 83
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.63 E-value=23 Score=14.16 Aligned_cols=67 Identities=9% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH-HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 9999999974999878111101466577799999-997623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS-SMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~-~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+...+.+.+.|++.+..+.......+.+...... .++.+......++.+|+.....+...+++.|+.
T Consensus 208 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~ 275 (355)
T 3e3m_A 208 AGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSIGVA 275 (355)
T ss_dssp HHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 71699999859994210022445302344566655687538999768856779999999999985999
No 84
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=29.31 E-value=19 Score=14.73 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=14.0
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 64088534588999999999769818
Q gi|255764508|r 174 KNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 174 ~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
..+++-=++-.|.=....++..|++.
T Consensus 211 ~~v~vCGp~~m~~~v~~~L~~~Gv~~ 236 (250)
T 1tvc_A 211 PDIYLCGPPGMIDAACELVRSRGIPG 236 (250)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf 57999299999999999999849988
No 85
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=28.85 E-value=24 Score=14.07 Aligned_cols=68 Identities=6% Similarity=-0.014 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCCCHHH--HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 9999999974999878--1111014665777999999976236864088534588999999999769818
Q gi|255764508|r 132 IVYNNKLLESGVERDD--IKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~--I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
...++.+.+.|++... +...+......+.+..........+....++.+++.....++..+++.|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~A~gv~~~l~~~g~~v 214 (287)
T 3bbl_A 145 QGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTI 214 (287)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 7899999972997431200135675568999999999746679975999887788899999999859998
No 86
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A
Probab=28.15 E-value=25 Score=13.99 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH---HHHHHH----CCC-------CCEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 999999997499987811110146657779999---999762----368-------640885345889999999997698
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFS---SSMIKN----MQG-------KNIILVSSAYHLKRSQLYFQHFGI 197 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~---~~il~~----~~~-------~~vilVTsa~Hm~RA~~~f~~~gi 197 (242)
..+.+.+.+....+.-+++-.||.+|.|...+. ++++.+ .+. +..+.||++-...+....-+ -
T Consensus 238 ~~l~~~l~~l~p~~TlfIviSKSftT~ETl~n~~~ar~wl~~~l~~~~~~~~~~i~khfvaiT~~~~~~~~~gi~~---~ 314 (613)
T 2o2c_A 238 THIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDE---E 314 (613)
T ss_dssp HHHHHHHHHCCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHEEEEESCHHHHHHHTCCG---G
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCHHHHHHHHHHH---C
T ss_conf 9999998644755427999526777641599999999999999876246620002323777338708999975541---5
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 1899842664431113
Q gi|255764508|r 198 NTKASCSDYLNAYYSI 213 (242)
Q Consensus 198 ~~~p~~~d~~~~~~~~ 213 (242)
.+.+.+. ...+.++.
T Consensus 315 ~iF~~~~-~VGGRfSv 329 (613)
T 2o2c_A 315 NMFQFWD-WVGGRYSM 329 (613)
T ss_dssp GEEECCT-TSCGGGCT
T ss_pred CEEECCC-CCCCCCCC
T ss_conf 7665666-67764046
No 87
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, protein structure initiative, midwest center for structural genomics; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=26.25 E-value=27 Score=13.78 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 82058999999999982520057533897068888778882799999999749998781111014665777999999
Q gi|255764508|r 90 SFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS 166 (242)
Q Consensus 90 ~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~ 166 (242)
-+.+..-+.+-+...|.- +...|. ..++|-..|...+...|||++.+-+--++.+..|-.+...-
T Consensus 11 mtf~g~el~aiikmak~m---------v~adgk---i~p~ei~~m~~e~~rfgi~~~q~~~ll~asd~~e~sqa~~l 75 (133)
T 2h5n_A 11 MTFSGQELTAIIKMAKSM---------VMADGK---IKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVAL 75 (133)
T ss_dssp CCCCHHHHHHHHHHHHHH---------HHTTSC---CCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHH---------HHHCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 766448799999999999---------870487---47799899999999937748999999981322678899999
No 88
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=26.18 E-value=27 Score=13.77 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=63.8
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 54568758999625213777765554346820589999999999825200575338970688887788827999999997
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
....+++.-+.+|...+..-..... -+....+ ..+..+-.++- -++.+. ++++.|-+.+.|..-+..+++.+.+
T Consensus 50 L~~~~a~~ki~iG~~~t~G~Gag~~-p~~g~~a---a~e~~~~I~~~-l~~~dl-vfi~aGmGGGTGtGaapvIA~~Ake 123 (320)
T 1ofu_A 50 LKNIAARTVLQLGPGVTKGLGAGAN-PEVGRQA---ALEDRERISEV-LEGADM-VFITTGMGGGTGTGAAPIIAEVAKE 123 (320)
T ss_dssp GSSCSCSEEEECCHHHHTTBCCCSC-HHHHHHH---HHHTHHHHHHH-HTTCSE-EEEEEETTSSHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEECCCCCCCCCCCCCC-CHHHHHH---HHHHHHHHHHH-HCCCCE-EEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 8469998089668887789889978-2266877---99999999999-735998-9998426898755458999999998
Q ss_pred CCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
Q ss_conf 499987811---110146657779999999762368640885345889
Q gi|255764508|r 141 SGVERDDIK---LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHL 185 (242)
Q Consensus 141 ~Gv~~~~I~---~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm 185 (242)
+|+..=.|. ++.+++...++|...-+-|+++ .+.+++|.++--+
T Consensus 124 ~g~l~vaiVt~PF~~EG~~r~~~A~~gl~~L~~~-~D~~Ivi~Nd~L~ 170 (320)
T 1ofu_A 124 MGILTVAVVTRPFPFEGRKRMQIADEGIRALAES-VDSLITIPNEKLL 170 (320)
T ss_dssp TTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHTT-CSEEEEEEHHHHH
T ss_pred CCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHH-CCCCEEECHHHHH
T ss_conf 5994899996783113389999999999999985-8743034369999
No 89
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=25.24 E-value=28 Score=13.66 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=50.0
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999982520057533897068888778882--7999999997499987811-11014665777999999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIK-LETQSLDTFQNAQFSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~-~e~~s~nT~ena~~~~~il~~~~~~~ 175 (242)
.+-.|+..|.. +|.+-+|..... ..+ .....+.+.+.|++...+. ..+....+.+.+ .+.+.+....+
T Consensus 163 a~~~L~~~G~r-----~I~~l~~~~~~~-~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 233 (330)
T 3ctp_A 163 AFDHLYEKGCR-----KILHIKGPEVFE-ATELRYKGFLDGARAKDLEIDFIEFQHDFQVKMLEED---INSMKDIVNYD 233 (330)
T ss_dssp HHHHHHHTTCC-----SEEEEECCTTCH-HHHHHHHHHHHHHHHTTCCCEEEECSSSCCGGGGGCC---CTTGGGGGGSS
T ss_pred HHHHHHHCCCC-----EEEEECCCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH---HHHHHHCCCCC
T ss_conf 99999986996-----699970666670-8999999999999854555420001230157789988---88887345898
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.++++++..-..+...+++.|+.
T Consensus 234 ai~~~~d~~a~g~~~~l~~~g~~ 256 (330)
T 3ctp_A 234 GIFVFNDIAAATVMRALKKRGVS 256 (330)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCEECCHHHHHHHHHHHHHCCCC
T ss_conf 52323789999999999981999
No 90
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435}
Probab=25.09 E-value=28 Score=13.64 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.+++.|.. +|.+-+|........+ -+..++.+.+.|++.+.+.. ....+..+ .. ...++.......++
T Consensus 135 ~~~~l~~~G~~-----~i~~i~~~~~~~~~~~R~~gf~~~~~~~~l~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~ai 206 (305)
T 3huu_A 135 LTQYLYHLGHR-----HILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVI-KSMNDLRD-FI-KQYCIDASHMPSVI 206 (305)
T ss_dssp HHHHHHHTTCC-----SEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEE-CSHHHHHH-HC---------CCCSEE
T ss_pred HHHHHHHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHH-HH-HHHHHHCCCCCCCC
T ss_conf 99999980897-----5312678865421679999999999984998310002-44321155-79-99999579997655
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
++.++....-++..+++.|++
T Consensus 207 ~~~~d~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 207 ITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
T ss_conf 456647777799999984999
No 91
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=24.86 E-value=28 Score=13.61 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHCCCC---CEEEEC----CHHHHHHHHHHHHHCC
Q ss_conf 799999997623686---408853----4588999999999769
Q gi|255764508|r 160 NAQFSSSMIKNMQGK---NIILVS----SAYHLKRSQLYFQHFG 196 (242)
Q Consensus 160 na~~~~~il~~~~~~---~vilVT----sa~Hm~RA~~~f~~~g 196 (242)
......+.+.+.+.+ +..++- +.-++.+....++..+
T Consensus 148 ~vl~~l~~l~~~g~~v~i~~~~i~g~~d~~e~i~~i~~~i~~l~ 191 (245)
T 3c8f_A 148 RTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMG 191 (245)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999997899899999998994899999999999998579
No 92
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=24.58 E-value=29 Score=13.58 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 665777999999976236864088
Q gi|255764508|r 155 LDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 155 ~nT~ena~~~~~il~~~~~~~vil 178 (242)
.++.++|....+.+++.|.+.+++
T Consensus 53 f~~~~~A~~~~~~lk~~g~~~~iv 76 (79)
T 1x60_A 53 FSSKDNADTLAARAKNAGFDAIVI 76 (79)
T ss_dssp ESSHHHHHHHHHHHHHHTSCCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 699999999999999839970999
No 93
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus HB8}
Probab=24.49 E-value=29 Score=13.57 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=66.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 56875899962521377776555434682058999999999982520057533897068888778882799999999749
Q gi|255764508|r 63 KKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESG 142 (242)
Q Consensus 63 ~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~G 142 (242)
.+..+.||++|=|-. ....|+...+ ++. + ..++.+-.. .+.+.+.+.+.+..
T Consensus 63 ~~~~~~vV~iGIGGS--------------~LG~~al~~a--l~~---~--~~~~~f~~n-------~d~~~~~~~l~~l~ 114 (415)
T 1zzg_A 63 NPWVEDFVLIGIGGS--------------ALGPKALEAA--FNE---S--GVRFHYLDH-------VEPEPILRLLRTLD 114 (415)
T ss_dssp CTTCSEEEEECCGGG--------------THHHHHHHHH--HCC---S--CCEEEEECS-------CCHHHHHHHHHHSC
T ss_pred HCCCCEEEEEEEEHH--------------HHHHHHHHHH--HHC---C--CCCEEEECC-------CCHHHHHHHHHCCC
T ss_conf 468986999966588--------------8999999999--846---7--970899468-------99899999996289
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHH---HHHHHCC----CCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 99878111101466577799999---9976236----8640885345889999999997698189984266
Q gi|255764508|r 143 VERDDIKLETQSLDTFQNAQFSS---SMIKNMQ----GKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 143 v~~~~I~~e~~s~nT~ena~~~~---~il~~~~----~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
..+.-+++-.||-+|.|.+.+.+ ++++++. .++++.||++---+. ...+++.+.++.+.|.+-
T Consensus 115 ~~~tl~iviSKSg~T~Et~~~~~~~~~~l~~~~~~~~~~~~v~iT~~~~~~l-~~~a~~~~~~~f~~p~~V 184 (415)
T 1zzg_A 115 PRKTLVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDWRRHLVVTTDPKEGPL-RAFAEREGLKAFAIPKEV 184 (415)
T ss_dssp GGGEEEEEEESSSCCHHHHHHHHHHHHHHHHHHGGGGGGGEEEEECSSSSHH-HHHHHHHTCEEEECCTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH-HHHHHHCCCCEEECCCCC
T ss_conf 4227999981898987899999999999875201388765577741208999-998764574288557778
No 94
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=24.21 E-value=29 Score=13.53 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=32.0
Q ss_pred HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHH
Q ss_conf 9999974999878111101466577799999997623686408853458899
Q gi|255764508|r 135 NNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLK 186 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~ 186 (242)
.+++...||+.++++.-.- +|.|++....+-+-+.+...+++|=|--.+.
T Consensus 103 ~~~~~~~GvD~~~~~~~~~--~~~E~~~~i~~~li~~~~~~liViDSv~~l~ 152 (356)
T 3hr8_A 103 PVYAKNLGVDLKSLLISQP--DHGEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHHHHHTCCGGGCEEECC--SSHHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred HHHHHHHCCCHHHHHHCCC--CHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 8899981887776531687--5699999999999856997589982732235
No 95
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=24.09 E-value=29 Score=13.52 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHH--HHCCHHHHHHHHHHHHHH-HH--HHHCC
Q ss_conf 99999982520057533897068888778882-79999999974999878--111101466577799999-99--76236
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDD--IKLETQSLDTFQNAQFSS-SM--IKNMQ 172 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~--I~~e~~s~nT~ena~~~~-~i--l~~~~ 172 (242)
.+-.|.+.|..+ +.+-+|........+ .+..++.+.+.|++.+. +.....+....+.+.... +. +....
T Consensus 122 ~~~~L~~~G~~~-----i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 196 (303)
T 3kke_A 122 ATEHLITLGHSR-----IAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPD 196 (303)
T ss_dssp HHHHHHHTTCCS-----EEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHCC-----EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999852055-----764158876607999999999999985998542230245666667999999999854431257
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 86408853458899999999976981
Q gi|255764508|r 173 GKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 173 ~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
....++++++..-..++..+++.|++
T Consensus 197 ~~~ai~~~~d~~a~g~~~al~~~g~~ 222 (303)
T 3kke_A 197 GPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp SCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 98489966778899999999983986
No 96
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12}
Probab=23.24 E-value=30 Score=13.41 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=46.1
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-------C--HHHHHHHH
Q ss_conf 58999625213777765554346820589999999999825200575338970688887788-------8--27999999
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL-------A--ESIVYNNK 137 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-------~--Ea~~m~~~ 137 (242)
..+|.+.+.+.... ....+...+...+..-++..+..+ +..|.+.|= ....+. | =|+..+++
T Consensus 27 ~~~l~l~~~v~F~~----~s~~L~~~~~~~L~~ia~~L~~~~----~~~i~I~Gh-tD~~g~~~~N~~LS~~RA~~V~~~ 97 (149)
T 2k1s_A 27 NIILNMPNNVTFDS----SSATLKPAGANTLTGVAMVLKEYP----KTAVNVIGY-TDSTGGHDLNMRLSQQRADSVASA 97 (149)
T ss_dssp EEEEEEEHHHHBSS----SSSCBCHHHHHHHHHHHHHHHHCT----TEEEEEEEE-CCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCEECC----CCCCCCHHHHHHHHHHHHHHHHCC----CCEEEEEEE-ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99998687405429----972269889999999999996489----957999988-078689557368999999999999
Q ss_pred HHHCCCCHHHHHCCHHH
Q ss_conf 99749998781111014
Q gi|255764508|r 138 LLESGVERDDIKLETQS 154 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s 154 (242)
|.+.|+++++|.....+
T Consensus 98 L~~~Gi~~~rl~~~g~G 114 (149)
T 2k1s_A 98 LITQGVDASRIRTQGLG 114 (149)
T ss_dssp HHHHTCCGGGEEEEECT
T ss_pred HHHCCCCHHEEEEEEEC
T ss_conf 99859993259999986
No 97
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=23.03 E-value=31 Score=13.39 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCCEE
Q ss_conf 999999825200575338970688887788827999999997499987811110146657779-9999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~vi 177 (242)
.+-.|+++|.. +|.+-++. ......-.+..++.+.+.|+......... ..+.+.+ ....+++++......+
T Consensus 109 a~~~L~~~G~~-----~i~~~~~~-~~~~~~R~~gf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai 180 (280)
T 3gyb_A 109 ATKHLIDLGHT-----HIAHLRVG-SGAGLRRFESFEATMRAHGLEPLSNDYLG--PAVEHAGYTETLALLKEHPEVTAI 180 (280)
T ss_dssp HHHHHHHTTCC-----SEEEECCS-SHHHHHHHHHHHHHHHHTTCCCEECCCCS--CCCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHCCCE-----EEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999972984-----67630123-21789998888778997299742010134--453778899999998538998389
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+..++.....++..+++.|++
T Consensus 181 ~~~~d~~a~g~~~~l~~~g~~ 201 (280)
T 3gyb_A 181 FSSNDITAIGALGAARELGLR 201 (280)
T ss_dssp EESSHHHHHHHHHHHHHHTCC
T ss_pred EECCHHHHHHHHHHHHHCCCC
T ss_conf 956889999999999987998
No 98
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A
Probab=22.10 E-value=32 Score=13.27 Aligned_cols=112 Identities=11% Similarity=0.141 Sum_probs=47.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCCCCEEEEC-CCCCCCCCC----CHH------HH
Q ss_conf 7589996252137777655543468205899999-99999825200575338970-688887788----827------99
Q gi|255764508|r 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFE-TMRLYKSCKQHSMHCTIIIS-GGDPQKHGL----AES------IV 133 (242)
Q Consensus 66 ~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~-a~~L~~~~~~~~~~~~ii~S-Gg~~~~~~~----~Ea------~~ 133 (242)
.|.|++-.++++.+..........+.. ...+.. ..+..+..+++ +.|+++| ||...+.+. +++ +.
T Consensus 38 ~~~v~~~~a~i~~d~~~~~~~~~~~~~-~~~~l~~~~~~i~~lq~~--giKvllsigG~~~~~~~~~l~s~~~~~~Fa~~ 114 (271)
T 1edt_A 38 FDVAVIFAANINYDTGTKTAYLHFNEN-VQRVLDNAVTQIRPLQQQ--GIKVLLSVLGNHQGAGFANFPSQQAASAFAKQ 114 (271)
T ss_dssp CSEEEEEEEEEEEETTTTEEEEECCHH-HHHHHHTHHHHTHHHHHT--TCEEEEEEEECTTSCCTTCCSSHHHHHHHHHH
T ss_pred CEEEEEEEEECCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 008997236615676788576506974-887756299999999878--89899995899888885356999999999999
Q ss_pred HHHHHHHCCCCHHHHHCCHHHH-------HHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 9999997499987811110146-------6577799999997623686408853
Q gi|255764508|r 134 YNNKLLESGVERDDIKLETQSL-------DTFQNAQFSSSMIKNMQGKNIILVS 180 (242)
Q Consensus 134 m~~~l~~~Gv~~~~I~~e~~s~-------nT~ena~~~~~il~~~~~~~vilVT 180 (242)
+.+++.+.|.+-=+|--|.-+. ...+|.....+-+++.-.++.+-+.
T Consensus 115 ~~~~~~~~~~DGiDiDwE~p~~~~~~~~~~~~~~~~~li~eLR~~~~~~~lt~a 168 (271)
T 1edt_A 115 LSDAVAKYGLDGVDFDDEYAEYGNNGTAQPNDSSFVHLVTALRANMPDKIISLY 168 (271)
T ss_dssp HHHHHHHHTCCEEEEECSSCCTTGGGCCCCCSSHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999998539997645353676777898863188999999999987898289998
No 99
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.97 E-value=32 Score=13.25 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=26.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf 78111101466577799999997623686408853458899999
Q gi|255764508|r 146 DDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQ 189 (242)
Q Consensus 146 ~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~ 189 (242)
+-++.-..|-+|.+ .....+.++++|. +++.||+..+-+=|.
T Consensus 81 Dl~I~iS~sG~t~~-~~~~~~~ak~~g~-~ii~IT~~~~s~la~ 122 (186)
T 1m3s_A 81 DLVIIGSGSGETKS-LIHTAAKAKSLHG-IVAALTINPESSIGK 122 (186)
T ss_dssp CEEEEECSSSCCHH-HHHHHHHHHHTTC-EEEEEESCTTSHHHH
T ss_pred CEEEEECCCCCCHH-HHHHHHHHHHCCC-EEEEEECCCCCHHHH
T ss_conf 99999838975146-9999999998799-599997999996799
No 100
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=21.89 E-value=32 Score=13.24 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=12.7
Q ss_pred CCCCCCCCCCEEEEECC
Q ss_conf 46454568758999625
Q gi|255764508|r 58 LSPQWKKDGNIIVLLGN 74 (242)
Q Consensus 58 ~~~~~~~~~d~IVVLGg 74 (242)
...+..++.|.||++||
T Consensus 61 ~~~~~~e~~DlVI~iGG 77 (278)
T 1z0s_A 61 QPSEELENFDFIVSVGG 77 (278)
T ss_dssp SCCGGGGGSSEEEEEEC
T ss_pred CCHHHCCCCCEEEEECC
T ss_conf 98112127999999878
No 101
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.76 E-value=32 Score=13.22 Aligned_cols=132 Identities=9% Similarity=0.035 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH-HHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0589999999999825200575338970688887788827999999997499987-811110146657779999999762
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERD-DIKLETQSLDTFQNAQFSSSMIKN 170 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~-~I~~e~~s~nT~ena~~~~~il~~ 170 (242)
.+..++..|++....-..+ . .|++-|.+... ...+.+++...|.+-- .=++-..=+| .+...
T Consensus 53 kT~~~L~~A~~~i~~i~~~--~-~ilfV~tk~~~-----~~~v~k~A~~~g~~~v~~Rw~gG~lTN---------~i~~~ 115 (295)
T 2zkq_b 53 RTWEKLLLAARAIVAIENP--A-DVSVISSRNTG-----QRAVLKFAAATGATPIAGRFTPGTFTN---------QIQAA 115 (295)
T ss_dssp HHHHHHHHHHHHHHHSSCG--G-GEEEEECSHHH-----HHHHHHHHHHHCCEEEESSCCCC-CCC---------TTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC--C-CEEEEECCHHH-----HHHHHHHHHHHCCEEEECCCCCCCCCC---------HHHHC
T ss_conf 9999999999999998589--9-37999896469-----999999999969973303214886552---------23422
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 368640885345889999999997698189984-2664431-113754578898999999999999999864
Q gi|255764508|r 171 MQGKNIILVSSAYHLKRSQLYFQHFGINTKASC-SDYLNAY-YSIIPLSANFYLTELALKEYIGILIAYYRG 240 (242)
Q Consensus 171 ~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~-~d~~~~~-~~~~p~~~~l~~~~~~~~E~ig~l~~~~~g 240 (242)
....++++|+++.+-.-|...+.+.||.+++.. ||..... ..-+|..+.-..+-.++.-.++--+.+.||
T Consensus 116 ~~~P~lliv~dp~~d~~av~Ea~~~~IPviai~DTn~~p~~vd~~IP~Ndds~~Si~l~~~~la~~vl~~~g 187 (295)
T 2zkq_b 116 FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRG 187 (295)
T ss_dssp CCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 457870477666643488999987499989981589996412357747883587999999999999999828
No 102
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83}
Probab=20.37 E-value=35 Score=13.04 Aligned_cols=20 Identities=5% Similarity=-0.145 Sum_probs=7.8
Q ss_pred HHHHHHHHCCCCHHHHHCCH
Q ss_conf 99999997499987811110
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLET 152 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~ 152 (242)
.|-+.+...+-+...|++-.
T Consensus 173 ~~l~~~~~~~~~~~~i~l~~ 192 (290)
T 2r6h_A 173 AQILHLFRTLKTGRKVSYWY 192 (290)
T ss_dssp HHHHHHHHTSCCCSCEEEEE
T ss_pred HHHHHHHHHCCCCCEEEEEE
T ss_conf 99999997058886299993
No 103
>3lod_A Putative acyl-COA N-acyltransferase; structural genomics, PSI2, MCSG, protein structure initiative; 2.50A {Klebsiella pneumoniae subsp}
Probab=20.29 E-value=35 Score=13.03 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 997623686408853458899999999976981899842664431
Q gi|255764508|r 166 SMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAY 210 (242)
Q Consensus 166 ~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~ 210 (242)
+..++.|.+++.|-|.. +.++|...+++.|++.++-..+|...+
T Consensus 101 ~~a~~~g~~~l~L~t~~-~n~~A~~fY~k~GF~~~~~~~~y~~d~ 144 (162)
T 3lod_A 101 AKARQRDCHTLRLETGI-HQHAAIALYTRNGYQTRCAFAPYQPDP 144 (162)
T ss_dssp HHHHTTTCCEEEEEEET-TCHHHHHHHHHTTCEEECCCTTCCCCS
T ss_pred HHHHHCCCCEEEEEECC-CCHHHHHHHHHCCCEECCCCCCCCCCC
T ss_conf 99998799899999789-999999999988999923316878998
Done!