RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764508|ref|YP_003065363.2| hypothetical protein
CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>gnl|CDD|182497 PRK10494, PRK10494, hypothetical protein; Provisional.
          Length = 259

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 28/195 (14%)

Query: 55  RPLLS--PQW--KKDGNIIVLLGNGTTIIPTIPAIRIEPSFQ----SYSRIFETMRLYKS 106
           RP+ S  P W   +  + IV+LG G T  P        PS      S  R+ E +RL+++
Sbjct: 64  RPIESRYPTWNGSQKVDYIVVLGGGYTWNPQWA-----PSSNLINNSLPRLTEGIRLWRA 118

Query: 107 CKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLES-GVERDDIKLETQSLDTFQNAQFSS 165
                +  T   +  +        + V      +S GV R+DI       DT + A    
Sbjct: 119 NPGAKLIFTGGAAKTNTVSTAEVGARV-----AQSLGVPREDIITLDLPKDTEEEAAAVK 173

Query: 166 SMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN------TKASCSDYLNAYYSIIPLSAN 219
             I +      +LV+SA HL R+ ++FQ  G+N       + +    LN +   IP    
Sbjct: 174 QAIGD---APFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVW 230

Query: 220 FYLTELALKEYIGIL 234
              +E A  E +G +
Sbjct: 231 LMHSERAGYETLGRI 245


>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine
           synthase, clade II.  This model represents a
           single-molecule form of
           phosphoribosylformylglycinamidine synthase, also called
           FGAM synthase, an enzyme of purine de novo biosynthesis.
           This model represents a second clade of these enzymes
           found in Clostridia, Bifidobacteria and Streptococcus
           species. This enzyme performs the fourth step in IMP
           biosynthesis (the precursor of all purines) from PRPP.
          Length = 1239

 Score = 27.9 bits (62), Expect = 2.7
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 22/130 (16%)

Query: 55  RPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHC 114
           R ++SP++K  G  I L       IP          F      F   ++ +    H    
Sbjct: 805 RRVISPEFKAAGENIYL-------IPGQALEDGTIDFDLLKENFA--QIEELIADHK--- 852

Query: 115 TIIISGGDPQKHGLAESIV---YNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNM 171
             ++S    +  G+AES+    + N++   G E ++ +LE   L T Q   F     + +
Sbjct: 853 --VVSASAVKYGGVAESLAKMTFGNRI---GAELNNPELED--LFTAQYGSFIFESPEEL 905

Query: 172 QGKNIILVSS 181
              N+  +  
Sbjct: 906 SIANVEKIGQ 915


>gnl|CDD|129656 TIGR00565, trpE_proteo, anthranilate synthase component I,
           proteobacterial subset.  This enzyme resembles some
           other chorismate-binding enzymes, including
           para-aminobenzoate synthase (pabB) and isochorismate
           synthase. There is a fairly deep split between two sets,
           seen in the pattern of gaps as well as in amino acid
           sequence differences. This group includes proteobacteria
           such as E. coli and Helicobacter pylori but also the
           gram-positive organism Corynebacterium glutamicum. The
           second group includes eukaryotes, archaea, and most
           other bacterial lineages; sequences from the second
           group may resemble pabB more closely than other trpE
           from this group.
          Length = 498

 Score = 26.0 bits (57), Expect = 8.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 97  IFETMRLYKSCKQHSMHCTIIISGG 121
           +F+ +RL +S K        +  GG
Sbjct: 107 VFDALRLLQSVKNKPKEPFAMFFGG 131


>gnl|CDD|179613 PRK03629, tolB, translocation protein TolB; Provisional.
          Length = 429

 Score = 25.9 bits (57), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 3/22 (13%)

Query: 48  HLQFSYQR---PLLSPQWKKDG 66
           + QF   R   PL+SP W  DG
Sbjct: 189 YNQFVVHRSPQPLMSPAWSPDG 210


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,922,114
Number of extensions: 243061
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 20
Length of query: 242
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,028,145
Effective search space: 608249895
Effective search space used: 608249895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.6 bits)