RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62] (242 letters) >3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12} (A:32-182) Length = 151 Score = 85.1 bits (210), Expect = 8e-18 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 8/146 (5%) Query: 69 IVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL 128 ++L GN ++PTI A + + + + + S + G Sbjct: 9 VILAGNA--VMPTIDAA-CKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGR 65 Query: 129 AESIVYNNKLLE-SGVERDDIKLETQSLDTFQNAQFSSSMIK--NMQGKNIILVSSAYHL 185 AE+ + + + + + I +E QS + +NA+FS +++ + I+V Sbjct: 66 AEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQ 125 Query: 186 KRSQLYFQHFGINTKASCSDYLNAYY 211 +R+ F+ + + +Y Sbjct: 126 RRTMATFRRMTGDNPDAPRWL--SYP 149 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 27.4 bits (60), Expect = 1.7 Identities = 24/201 (11%), Positives = 44/201 (21%), Gaps = 75/201 (37%) Query: 41 IPTILL---------------KHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAI 85 +P +L K F+ +LS P AI Sbjct: 150 LPLLLSNPPRNMIGQSQSGTGKTAAFAL--TMLSRVDASV--------------PKPQAI 193 Query: 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESI------------- 132 + PS + +I + + D G Sbjct: 194 CLAPSRELARQIMDVVTEMG----KYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDL 249 Query: 133 VYNNKLLESGVE----------------RDDIKLETQSLD-TFQNAQFSSSMIKNMQG-- 173 + +L ++ D L Q FS++ + ++ Sbjct: 250 MKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYA 309 Query: 174 ----KNIILVSSAYHLKRSQL 190 N + LK +L Sbjct: 310 ERFAPNANEIR----LKTEEL 326 >3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} (A:191-434) Length = 244 Score = 27.5 bits (60), Expect = 1.9 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 5/135 (3%) Query: 35 FIGWGIIPTILLKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSY 94 +G G IP L L+ + + + +V G T T+ + +F Sbjct: 27 QLGIGAIPDAALLFLKDKKDLGIHTEXFSDGVVELVRSGVITGKKKTLHPGKXVATFLXG 86 Query: 95 SRIFETMRLYK----SCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIK 149 S ++ +I+ D I +++ + Sbjct: 87 SEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNXVSINSCIEIDLXGQVVSECIGSKQFS 146 Query: 150 LETQSLDTFQNAQFS 164 +D + A +S Sbjct: 147 GTGGQVDYVRGAAWS 161 >1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} (A:126-246) Length = 121 Score = 26.4 bits (58), Expect = 3.8 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175 G+A S+VY L R D D NA+ + + + + + Sbjct: 1 GVALSLVYREGRLTRASTRGD---GRTGEDVTLNARTIADVPERLTPGD 46 >3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus influenzae} (A:56-173) Length = 118 Score = 25.6 bits (56), Expect = 6.4 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175 GLA SI+Y N L R D T D N + ++ + N Sbjct: 1 GLAVSILYVNGELTQAATRGD---GTTGEDITANIRTIRNVPLQLLTDN 46 >3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB: 3jsn_A* (A:115-227) Length = 113 Score = 25.2 bits (55), Expect = 8.3 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLK 186 GLA S+ Y + G+ R D T D +N + ++ M+ + V Sbjct: 1 GLAVSLKYVDGYFVQGLTRGD---GTTGEDITENLKTIHAIPLKMKEPLNVEV------- 50 Query: 187 RSQLYFQH 194 R + Y Sbjct: 51 RGEAYMPR 58 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* (A:153-365) Length = 213 Score = 25.2 bits (55), Expect = 8.6 Identities = 4/22 (18%), Positives = 11/22 (50%) Query: 157 TFQNAQFSSSMIKNMQGKNIIL 178 ++ ++ I+ G+ I+L Sbjct: 124 EWKQGDIVTTQIQCHNGETIVL 145 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.140 0.427 Gapped Lambda K H 0.267 0.0623 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,840,182 Number of extensions: 78933 Number of successful extensions: 242 Number of sequences better than 10.0: 1 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 15 Length of query: 242 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 156 Effective length of database: 2,048,819 Effective search space: 319615764 Effective search space used: 319615764 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 53 (24.4 bits)