RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764508|ref|YP_003065363.2| hypothetical protein
CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
           structural genomics, structure 2 function project, S2F,
           unknown function; 1.80A {Escherichia coli K12}
           (A:32-182)
          Length = 151

 Score = 85.1 bits (210), Expect = 8e-18
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 69  IVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL 128
           ++L GN   ++PTI A   + +      +  +  +  S                 +  G 
Sbjct: 9   VILAGNA--VMPTIDAA-CKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGR 65

Query: 129 AESIVYNNKLLE-SGVERDDIKLETQSLDTFQNAQFSSSMIK--NMQGKNIILVSSAYHL 185
           AE+ +  +   +   +  + I +E QS +  +NA+FS +++     +    I+V      
Sbjct: 66  AEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQ 125

Query: 186 KRSQLYFQHFGINTKASCSDYLNAYY 211
           +R+   F+    +   +      +Y 
Sbjct: 126 RRTMATFRRMTGDNPDAPRWL--SYP 149


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 24/201 (11%), Positives = 44/201 (21%), Gaps = 75/201 (37%)

Query: 41  IPTILL---------------KHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAI 85
           +P +L                K   F+    +LS                    P   AI
Sbjct: 150 LPLLLSNPPRNMIGQSQSGTGKTAAFAL--TMLSRVDASV--------------PKPQAI 193

Query: 86  RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESI------------- 132
            + PS +   +I + +                    D    G                  
Sbjct: 194 CLAPSRELARQIMDVVTEMG----KYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDL 249

Query: 133 VYNNKLLESGVE----------------RDDIKLETQSLD-TFQNAQFSSSMIKNMQG-- 173
           +   +L    ++                 D        L    Q   FS++  + ++   
Sbjct: 250 MKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYA 309

Query: 174 ----KNIILVSSAYHLKRSQL 190
                N   +     LK  +L
Sbjct: 310 ERFAPNANEIR----LKTEEL 326


>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
           genomics, PSI-2, protein structure initiative; HET: MSE;
           2.05A {Porphyromonas gingivalis} (A:191-434)
          Length = 244

 Score = 27.5 bits (60), Expect = 1.9
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 35  FIGWGIIPTILLKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSY 94
            +G G IP   L  L+      + +  +      +V  G  T    T+   +   +F   
Sbjct: 27  QLGIGAIPDAALLFLKDKKDLGIHTEXFSDGVVELVRSGVITGKKKTLHPGKXVATFLXG 86

Query: 95  SRIFETMRLYK----SCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIK 149
           S                    ++   +I+  D          I    +++   +      
Sbjct: 87  SEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNXVSINSCIEIDLXGQVVSECIGSKQFS 146

Query: 150 LETQSLDTFQNAQFS 164
                +D  + A +S
Sbjct: 147 GTGGQVDYVRGAAWS 161


>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium
           tuberculosis} (A:126-246)
          Length = 121

 Score = 26.4 bits (58), Expect = 3.8
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175
           G+A S+VY    L     R D        D   NA+  + + + +   +
Sbjct: 1   GVALSLVYREGRLTRASTRGD---GRTGEDVTLNARTIADVPERLTPGD 46


>3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA
           replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus
           influenzae} (A:56-173)
          Length = 118

 Score = 25.6 bits (56), Expect = 6.4
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175
           GLA SI+Y N  L     R D    T   D   N +   ++   +   N
Sbjct: 1   GLAVSILYVNGELTQAATRGD---GTTGEDITANIRTIRNVPLQLLTDN 46


>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA
           replication, magnesium, manganese, metal-binding, NAD,
           zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB:
           3jsn_A* (A:115-227)
          Length = 113

 Score = 25.2 bits (55), Expect = 8.3
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLK 186
           GLA S+ Y +     G+ R D    T   D  +N +   ++   M+    + V       
Sbjct: 1   GLAVSLKYVDGYFVQGLTRGD---GTTGEDITENLKTIHAIPLKMKEPLNVEV------- 50

Query: 187 RSQLYFQH 194
           R + Y   
Sbjct: 51  RGEAYMPR 58


>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
           hydrolase; HET: NAD; 2.3A {Flavobacterium
           meningosepticum} PDB: 2ixb_A* (A:153-365)
          Length = 213

 Score = 25.2 bits (55), Expect = 8.6
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 157 TFQNAQFSSSMIKNMQGKNIIL 178
            ++     ++ I+   G+ I+L
Sbjct: 124 EWKQGDIVTTQIQCHNGETIVL 145


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,840,182
Number of extensions: 78933
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 15
Length of query: 242
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 156
Effective length of database: 2,048,819
Effective search space: 319615764
Effective search space used: 319615764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)