RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764508|ref|YP_003065363.2| hypothetical protein
CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 187

 Score = 25.7 bits (56), Expect = 4.1
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 191 YFQHFGINTKASCSDYLNAYYSIIPLSANFYLTELALKEYI 231
           ++ HFGI+  A     +  Y +   +     +T+   K   
Sbjct: 31  FWHHFGIDPVAIVRAAIVNYRAGRIVQGGSTITQQLAKNLF 71


>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score = 25.2 bits (55), Expect = 5.2
 Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 16/94 (17%)

Query: 96  RIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNN-------------KLLESG 142
           ++  +   +     H M            K   A  +V                ++L   
Sbjct: 56  KVMRSGGSHYKVAGHFMRREHRSLNS---KKVRAYEVVKEAFKIIEKRTGKNPIQVLVWA 112

Query: 143 VERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176
           +E    + +T S+         +  I  ++  ++
Sbjct: 113 IENAAPREDTTSVMFGGIRYHVAVDISPLRRLDV 146


>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
           MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 253

 Score = 24.4 bits (53), Expect = 8.6
 Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 118 ISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177
           +SGG  Q+  +A +++ ++ +L      D+    T +LDT       +++ +  + +  +
Sbjct: 153 LSGGQRQRIAIARALLRDSPILIL----DEA---TSALDTESERAIQAALDELQKNRTSL 205

Query: 178 LVS 180
           +++
Sbjct: 206 VIA 208


>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 329

 Score = 24.2 bits (52), Expect = 9.1
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 156 DTFQNAQFSSSMIKNMQGKNIILVSSAYHLKR---SQLYFQHFGINTKASCSDYLNAYYS 212
             F    F     K+   K+++   SA  LKR         + G        +Y +A  S
Sbjct: 277 SDFHL--FGPPGKKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLG-------FEYYSAIQS 327

Query: 213 I 213
           +
Sbjct: 328 M 328


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 929,238
Number of extensions: 42052
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 12
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.1 bits)