HHsearch alignment for GI: 255764509 and conserved domain: pfam00368
>pfam00368 HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase. The HMG-CoA reductases catalyse the conversion of HMG-CoA to mevalonate, which is the rate-limiting step in the synthesis of isoprenoids like cholesterol. Probably because of the critical role of this enzyme in cholesterol homeostasis, mammalian HMG-CoA reductase is heavily regulated at the transcriptional, translational, and post-translational levels.
Probab=100.00 E-value=0 Score=843.90 Aligned_cols=334 Identities=37% Similarity=0.517 Sum_probs=323.0
Q ss_pred CCCCCEEEEEEEEEEECCEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCHH
Q ss_conf 97641037861127603756765136774788653034538999989999999559988999967922412599858977
Q gi|255764509|r 1 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAE 80 (351)
Q Consensus 1 m~en~IG~~~lPlGia~~l~InG~~a~~~y~VPMATeE~SvVAAas~gak~~~~~sGG~~t~~~~~~m~r~~~f~~~~~~ 80 (351)
T Consensus 36 ~IEN~IG~~~lPlGvA~~l~InG~----~y~vPMAteE~svVAa~srgaK~~-~~~GG~~t~v~~~~m~~q~~~~f~~~~ 110 (370)
T pfam00368 36 NIENVIGYVQVPLGVAGPLLINGK----EYYVPMATTEGALVASANRGAKAI-RASGGVTTRVLGDGMTRAPVFRFPSVR 110 (370)
T ss_pred CCCEEEEEEECCEEEECCEEECCE----EEEEEEEECHHHHHHHHHHHHHHH-HHCCCEEEEECCCCEEEEEEEEECCHH
T ss_conf 645000034233236637799988----889877753888999998899999-856982999888866874799978734
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89999976175099999997301578047888878738869999999732006721588999999999998679814897
Q gi|255764509|r 81 MALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGS 160 (351)
Q Consensus 81 ~a~~~~~~i~~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~~~~ 160 (351)
T Consensus 111 ~~~~~~~~i~~~~~~i~~~a~~~srgggl~~i~~~~~~~~~~l~~~~dt~DAMGaNmvn~~~e~v~~~i~~~~~~~~~~~ 190 (370)
T pfam00368 111 DAAEFKAWIEENFEEIKEAAESTSRHGGLQDIEPYIAGRMVYLRFIYDTGDAMGMNMVTKATEAACEFIEEEFPGMELLA 190 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 19999999999999999998610578764799999708869999996213454206889999999999998689977999
Q ss_pred ECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH
Q ss_conf 34774312333554310377207999987569999757389999999887866565542200220216216677888887
Q gi|255764509|r 161 VSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL 240 (351)
Q Consensus 161 ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~~~~a~t~NkgimNgI~Av~l 240 (351)
T Consensus 191 IlsN~~tdKk~s~~n~~~grG~~V~A~~~i~~~~l~~~l~~~~e~~~~-i~~a~~~a~~d~~ra~t~NkgimNgI~Av~i 269 (370)
T pfam00368 191 LSGNLCTDKKPSAINWIEGRGKSVVAEAVIPAEVVEKVLKTTPEALVE-INTAKNLAGSALAGAIGFNAHAANGVAAVFI 269 (370)
T ss_pred EECCCCCCCCHHHHEEECCCCEEEEEEEEECHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 945765432201110004786399999999799996622999999999-9999999867661443124535878789985
Q ss_pred HCCCCHHHHHHHCCCEEEEEEE-CCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6276378888640320256872-890899998056467730664468889999986086877887769889999999999
Q gi|255764509|r 241 ATGQDAANIVEGSQGLTYAKLH-DDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNARRLAAICAATV 319 (351)
Q Consensus 241 ATGnD~a~v~a~~~a~t~~~~~-~~~L~g~i~lPsl~vGtVGG~t~lp~~~~~l~ilg~~~~~~~~~~A~~La~iiAavg 319 (351)
T Consensus 270 ATGqD~ravea~aha~a~~~g~y~g~L~~sitlPsL~VGtVGGgt~lp~~~~~l~ilg~~g~~----~a~~La~IiAa~g 345 (370)
T pfam00368 270 ATGQDPAQVVESSHAITTMEGTYDGDLYGSVTLPSLEVGTVGGGTGLPTQRACLELLGVKGGG----NAKKLAEIIAAVV 345 (370)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCCC----CHHHHHHHHHHHH
T ss_conf 606967899877557332000458808999996671257405877686699999983999987----8999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 88899999988078868999987260
Q gi|255764509|r 320 LCGELSLLAAQTNPGELMEAHLRLER 345 (351)
Q Consensus 320 LAqnlaal~Al~t~G~iq~gHmkl~R 345 (351)
T Consensus 346 LA~nlsal~Al~t~g-iq~gHm~L~R 370 (370)
T pfam00368 346 LAGELSLLAALAAGH-LVKAHMKLGR 370 (370)
T ss_pred HHHHHHHHHHHHHCC-HHHHHHHHCC
T ss_conf 998999999988273-7899987459