RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme
A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62]
(351 letters)
>gnl|CDD|129624 TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylglutaryl Coenzyme A
reductase, hydroxymethylglutaryl-CoA reductase (NADP).
This model represents archaeal examples of the enzyme
hydroxymethylglutaryl-CoA reductase (NADP) (EC 1.1.1.34)
and the catalytic domain of eukaryotic examples, which
also contain a hydrophobic N-terminal domain. This
enzyme synthesizes mevalonate, a precursor of
isopentenyl pyrophosphate (IPP), a building block for
the synthesis of cholesterol, isoprenoids, and other
molecules. A related hydroxymethylglutaryl-CoA
reductase, typified by an example from Pseudomonas
mevalonii, is NAD-dependent and catabolic.
Length = 402
Score = 230 bits (588), Expect = 4e-61
Identities = 128/343 (37%), Positives = 186/343 (54%), Gaps = 10/343 (2%)
Query: 6 VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65
+ + +P+ GP+KI G + + +PLAT E L SV RG G +
Sbjct: 67 IGYMQIPLGVAGPLKIDGEYAKGEYYIPLATTEGALVASVNRGCSAITAG-GGATVRVTK 125
Query: 66 ERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQ-IAGNLLFLR 124
+ MTR+ T + A I + I E T++ + ++ +AG+LL+ R
Sbjct: 126 DGMTRAPVVRTPSVVRAGACRIWIDENQNAIKEAAESTTRHGKLQKIQPICLAGDLLYPR 185
Query: 125 LEFATGDASGHNMVTKAADAVMDWILSQ--WSYLHYGSVSGNICSDKKATAINGIMGRGK 182
TGDA G NMVT A + + ++ + W + +VSGN C+DKK AIN I GRGK
Sbjct: 186 FVTTTGDAMGMNMVTIATEYALKQMVEEYGWEGMEVVAVSGNYCTDKKPAAINLIEGRGK 245
Query: 183 NFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLAT 242
+ VAE TI + K L+T+ ++ +N KNLIG+ +AG + NAH+AN++ A +LAT
Sbjct: 246 SIVAEATIPGDVVNKVLKTTVSALVEVNIAKNLIGSAMAGSM-GFNAHYANIIGAIFLAT 304
Query: 243 GQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEER 302
GQD A+IVEGS G+T A+ D LYFS ++P++ +G VG G + L LG
Sbjct: 305 GQDEAHIVEGSLGITLAEEVDGDLYFSVSLPDVPVGTVGGGTVLETQGECLDLLGV---- 360
Query: 303 KTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLER 345
+ G+NAR+ A I VL GELSL A G L++AH+ L R
Sbjct: 361 RGGNNARQFAEIVGCAVLAGELSLCGALA-AGHLVQAHMELGR 402
>gnl|CDD|162108 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase.
Length = 886
Score = 219 bits (560), Expect = 6e-58
Identities = 132/347 (38%), Positives = 191/347 (55%), Gaps = 15/347 (4%)
Query: 11 MPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTR 70
+P+ GP+ + G Q VP+AT E L S RG ML G+R+ ++ + MTR
Sbjct: 533 IPVGVAGPLLLDGKEYQ----VPMATTEGCLVASTNRGCRALMLG-GGVRSRVLADGMTR 587
Query: 71 SIFFETENAEMALTALQ--EITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFA 128
+A A A E+ A I + TS+F R ++H +AG L++R +
Sbjct: 588 GPVVRLPSACRAAEAKAWLEVPENFAVIKDAFDSTSRFARLKKIHIAMAGRNLYIRFQAK 647
Query: 129 TGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKNFVAEI 188
TGDA G NM++K + + + + + S+SGN C+DKK AIN I GRGK+ V E
Sbjct: 648 TGDAMGMNMISKGTEQALAELQEHFPDMQILSLSGNYCTDKKPAAINWIEGRGKSVVCEA 707
Query: 189 TINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATGQDAAN 248
TI I + L+TS E ++ +N KNLIG+ +AG I NAH AN++ A Y+ATGQDAA
Sbjct: 708 TIPAKIVRSVLKTSAEALVDVNINKNLIGSAMAGSIGGFNAHAANIVTAIYIATGQDAAQ 767
Query: 249 IVEGSQGLT----YAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGC--IEER 302
V S +T + +D LY SCT+P++ +G VG G +P L LG
Sbjct: 768 NVGSSNCMTLMEAWGPTGED-LYISCTMPSIEIGTVGGGTVLPPQSACLQMLGVRGANAT 826
Query: 303 KTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349
+ G+NA++LA I ATV+ GELSL+AA G L+++H+R R +N
Sbjct: 827 RPGENAKQLARIVCATVMAGELSLMAALAA-GHLVKSHMRHNRSSIN 872
>gnl|CDD|183299 PRK11753, PRK11753, DNA-binding transcriptional dual regulator Crp;
Provisional.
Length = 211
Score = 28.8 bits (65), Expect = 2.0
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 63 LIDERMTRSIFF----ETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAG 118
L +E RS + E AE++ +++ +I + ++Q R LQ S+ G
Sbjct: 77 LFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMAL--SAQMARRLQNTSRKVG 134
Query: 119 NLLFL 123
+L FL
Sbjct: 135 DLAFL 139
>gnl|CDD|179449 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 82 ALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQI-----AGNLLFLRL 125
A AL+ A I ++++ + + LQ Q+ A N L+LRL
Sbjct: 273 AQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVWPSAANFLYLRL 321
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 26.8 bits (59), Expect = 9.6
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 127 FATGDASGHNMVTKAAD----AVMDWILSQWSYLHYGSVSGN 164
F GDA+G M+ A V+DWI + +V
Sbjct: 466 FCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENW 507
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.134 0.395
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,550,313
Number of extensions: 346246
Number of successful extensions: 625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 10
Length of query: 351
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 257
Effective length of database: 3,963,321
Effective search space: 1018573497
Effective search space used: 1018573497
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)