RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme
A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62]
(351 letters)
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase,
cholesterol, biocynthesis, HMG-COA, NADPH, statin,
alternative splicing; HET: RIE; 1.70A {Homo sapiens}
PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A*
3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A*
1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A*
...
Length = 441
Score = 272 bits (698), Expect = 7e-74
Identities = 123/351 (35%), Positives = 188/351 (53%), Gaps = 13/351 (3%)
Query: 6 VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65
+ + +P+ GP+ + + +VP+AT E L S RG L G + ++
Sbjct: 97 IGYMPIPVGVAGPLCLDE----KEFQVPMATTEGCLVASTNRGCRAIGLG-GGASSRVLA 151
Query: 66 ERMTRSIFFETENAE--MALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFL 123
+ MTR A + A E + A I + TS+F R +LH+ IAG L++
Sbjct: 152 DGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYI 211
Query: 124 RLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKN 183
R + +GDA G NM++K + + + + + +VSGN C+DKK AIN I GRGK+
Sbjct: 212 RFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKS 271
Query: 184 FVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATG 243
V E I + ++ L+T+ E +I +N KNL+G+ +AG I NAH AN++ A Y+A G
Sbjct: 272 VVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACG 331
Query: 244 QDAANIVEGSQGLT---YAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE 300
QDAA V S +T + ++ LY SCT+P++ +G VG G N+ + L LG
Sbjct: 332 QDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQG 391
Query: 301 ERKT--GDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349
K G+NAR+LA I TV+ GELSL+AA G L+++H+ R +N
Sbjct: 392 ACKDNPGENARQLARIVCGTVMAGELSLMAALAA-GHLVKSHMIHNRSKIN 441
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A
{Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB:
1qay_A* 1qax_A* 1r7i_A 1t02_A*
Length = 428
Score = 189 bits (482), Expect = 7e-49
Identities = 57/362 (15%), Positives = 102/362 (28%), Gaps = 46/362 (12%)
Query: 6 VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65
+ + +P +I G V VPL E + + A ++ G +
Sbjct: 55 IGTFELPYAVASNFQING----RDVLVPLVVEEPSIVAAASYMAKLARAN-GGFTTSSSA 109
Query: 66 ERMTRSIFFETENAEMALTA--------LQEITLKKAEIARVIEQTSQFTRFLQLHSQIA 117
M + + + E+ +K ++ + +
Sbjct: 110 PLMHAQVQIVGIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPR 169
Query: 118 GNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGI 177
G +L L DA G N V A+AV + + + N+ + A A
Sbjct: 170 GPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARA---- 225
Query: 178 MGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLA 237
+ S E +I + N N +
Sbjct: 226 ----------QVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDP 275
Query: 238 YYLATGQDAANIVEGS----------QGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNI- 286
+ATG D + G+ LT + ++ + +G VG
Sbjct: 276 LIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTH 335
Query: 287 PAIKNNLTALGCIEERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERM 346
P + +L LG A+ LA I A L L + A G + H+ L
Sbjct: 336 PLAQLSLRILGV-------KTAQALAEIAVAVGLAQNLGAMRALATEG-IQRGHMALHAR 387
Query: 347 HL 348
++
Sbjct: 388 NI 389
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 46.5 bits (110), Expect = 9e-06
Identities = 57/340 (16%), Positives = 88/340 (25%), Gaps = 128/340 (37%)
Query: 51 ISMLCPDG--IRATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTR 108
+L P A+ + E+ + + TE A + E E +F
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGF-----AADD------EPTTPAELVGKFLG 66
Query: 109 FL--QLHSQIAG-NLLFLRL---EF-----ATGD-----ASGHNMVTKAADAVMDWILSQ 152
++ + G L L EF D A + I
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK-- 124
Query: 153 WSYLHYGSVSGNICS------------DKKAT--AINGIMGRGKN--FVAEITINRAICQ 196
+Y+ ++ + A AI G G+G + E
Sbjct: 125 -NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEE--------- 172
Query: 197 KYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATGQDAANIVEGSQGL 256
LR L T L+G I+ + + L A V +QGL
Sbjct: 173 --LRD------LYQTYHVLVGDL----IKFSAETLSE------LIRTTLDAEKVF-TQGL 213
Query: 257 TYAK-LHD-----DSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNARR 310
+ L + D Y +IP + C P I G
Sbjct: 214 NILEWLENPSNTPDKDYLL-SIP---ISC-------PLI-------G------------- 242
Query: 311 LAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNG 350
+ + V L PGEL R +L G
Sbjct: 243 VIQLAHYVVTAKLLGF-----TPGEL--------RSYLKG 269
Score = 38.0 bits (88), Expect = 0.003
Identities = 52/280 (18%), Positives = 79/280 (28%), Gaps = 140/280 (50%)
Query: 6 VSS-ISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR---- 60
+S IS P+ IG VIQ LA Y V A + P +R
Sbjct: 232 LSIPISCPL--IG-------VIQ------LAHY------VVT--AKLLGFTPGELRSYLK 268
Query: 61 -----------ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRF 109
A I E + FF + A+T L F F
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFV--SVRKAITVL-------------------F--F 305
Query: 110 LQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAV---------MDWILSQWSYLHYGS 160
+ + A L S ++ D++ M L S
Sbjct: 306 IGVRCYEAYPNTSL-------PPS---IL---EDSLENNEGVPSPM---L---------S 340
Query: 161 VSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEK----IILLNTQKNLI 216
+S + + V + +N+ +L P I L+N KNL+
Sbjct: 341 ISN--LT--------------QEQVQDY-VNK--TNSHL---PAGKQVEISLVNGAKNLV 378
Query: 217 GTFLAGGIRSANAHFANML--LAYYL-----ATGQDAANI 249
++G +S L L L +G D + I
Sbjct: 379 ---VSGPPQS--------LYGLNLTLRKAKAPSGLDQSRI 407
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (61), Expect = 3.5
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 21 ITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID-----ERMTRSIFFE 75
I GN D V L +EY L+ S L DG+RA I ++ ++I
Sbjct: 1406 IPGNRNADNVDKILEQFEYVLYPS-------KTLKTDGVRAVSITSFGFGQKGGQAIVVH 1458
Query: 76 TENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFA 128
+ A+T + +A+V + +F H+ + N LF+ E A
Sbjct: 1459 PDYLYGAITEDR----YNEYVAKVSAREKSAYKF--FHNGMIYNKLFVSKEHA 1505
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 26.5 bits (58), Expect = 8.9
Identities = 2/24 (8%), Positives = 11/24 (45%)
Query: 192 RAICQKYLRTSPEKIILLNTQKNL 215
+ + + ++ + I ++ +N
Sbjct: 46 KKLMDEAIKDYDKNIRFIDLDENS 69
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 26.4 bits (58), Expect = 9.6
Identities = 6/32 (18%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 262 HDDSLYFSCTIPNLILG-CVGNGKNIPAIKNN 292
H+ + ++ P+LI+G C+ +++ ++
Sbjct: 7 HELGMNYNFIRPDLIVGSCLQTPEDVDKLRKI 38
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.134 0.395
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,893,704
Number of extensions: 126541
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 9
Length of query: 351
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 258
Effective length of database: 3,438,538
Effective search space: 887142804
Effective search space used: 887142804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)