BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62] (351 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/351 (100%), Positives = 351/351 (100%) Query: 1 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR 60 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR Sbjct: 1 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR 60 Query: 61 ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNL 120 ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNL Sbjct: 61 ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNL 120 Query: 121 LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGR 180 LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGR Sbjct: 121 LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGR 180 Query: 181 GKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL 240 GKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL Sbjct: 181 GKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL 240 Query: 241 ATGQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE 300 ATGQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE Sbjct: 241 ATGQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE 300 Query: 301 ERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNGE 351 ERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNGE Sbjct: 301 ERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNGE 351 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 24.3 bits (51), Expect = 3.2, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 26/151 (17%) Query: 39 YPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAEMALTALQEITLKKAEIAR 98 YPL+ + + DGI + L +E + ++F + ++A + +L E Sbjct: 42 YPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLGE---------- 91 Query: 99 VIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHY 158 T F Q+ I + + A D G+N K LS+ S HY Sbjct: 92 ----TQSVKDFFQVMKMIDAYRSYGHFK-ANIDPLGYNSHQKD--------LSELSPAHY 138 Query: 159 GSVSGNICSDKKATAINGIMGRGKNFVAEIT 189 G V + D+K + G++G + EI Sbjct: 139 GFVKADY--DRK-ICMKGVLGLESATIPEIV 166 >gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62] Length = 471 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 190 INRAICQKYLRTSPEKIILLN 210 ++R I + LRT+PE++ LN Sbjct: 368 VDRQIMDRILRTAPEQLSTLN 388 >gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter asiaticus str. psy62] Length = 389 Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 155 YLHYGSVSGNICSDKKATAING 176 Y ++GS+S I D++ AING Sbjct: 124 YKNFGSISLLITGDEEGPAING 145 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 22.7 bits (47), Expect = 9.0, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 23/42 (54%) Query: 91 LKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDA 132 LK +++ + + SQ+ ++ S I NL+ L+ AT DA Sbjct: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635 >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 22.7 bits (47), Expect = 10.0, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 6/44 (13%) Query: 3 MKKVSSISMPMRWIGPMKITGNV--IQDKVKVPLATYE--YPLW 42 M + ++ ++P+R++G K++G+ I + + +P+AT + Y W Sbjct: 686 MSEANNKNIPLRYLG--KVSGSTLSIHNILNIPVATLQTKYESW 727 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.134 0.395 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 209,865 Number of Sequences: 1233 Number of extensions: 8026 Number of successful extensions: 28 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 12 length of query: 351 length of database: 328,796 effective HSP length: 75 effective length of query: 276 effective length of database: 236,321 effective search space: 65224596 effective search space used: 65224596 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)