BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme
A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 351

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR 60
           MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR
Sbjct: 1   MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR 60

Query: 61  ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNL 120
           ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNL
Sbjct: 61  ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNL 120

Query: 121 LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGR 180
           LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGR
Sbjct: 121 LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGR 180

Query: 181 GKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL 240
           GKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL
Sbjct: 181 GKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL 240

Query: 241 ATGQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE 300
           ATGQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE
Sbjct: 241 ATGQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE 300

Query: 301 ERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNGE 351
           ERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNGE
Sbjct: 301 ERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNGE 351


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 24.3 bits (51), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 26/151 (17%)

Query: 39  YPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAEMALTALQEITLKKAEIAR 98
           YPL+  +   +       DGI + L +E +  ++F + ++A  +  +L E          
Sbjct: 42  YPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLGE---------- 91

Query: 99  VIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHY 158
               T     F Q+   I     +   + A  D  G+N   K         LS+ S  HY
Sbjct: 92  ----TQSVKDFFQVMKMIDAYRSYGHFK-ANIDPLGYNSHQKD--------LSELSPAHY 138

Query: 159 GSVSGNICSDKKATAINGIMGRGKNFVAEIT 189
           G V  +   D+K   + G++G     + EI 
Sbjct: 139 GFVKADY--DRK-ICMKGVLGLESATIPEIV 166


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score = 24.3 bits (51), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 190 INRAICQKYLRTSPEKIILLN 210
           ++R I  + LRT+PE++  LN
Sbjct: 368 VDRQIMDRILRTAPEQLSTLN 388


>gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 389

 Score = 23.5 bits (49), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 155 YLHYGSVSGNICSDKKATAING 176
           Y ++GS+S  I  D++  AING
Sbjct: 124 YKNFGSISLLITGDEEGPAING 145


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 22.7 bits (47), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 91  LKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDA 132
           LK +++  +  + SQ+  ++   S I  NL+   L+ AT DA
Sbjct: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 22.7 bits (47), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 6/44 (13%)

Query: 3   MKKVSSISMPMRWIGPMKITGNV--IQDKVKVPLATYE--YPLW 42
           M + ++ ++P+R++G  K++G+   I + + +P+AT +  Y  W
Sbjct: 686 MSEANNKNIPLRYLG--KVSGSTLSIHNILNIPVATLQTKYESW 727


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,865
Number of Sequences: 1233
Number of extensions: 8026
Number of successful extensions: 28
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 12
length of query: 351
length of database: 328,796
effective HSP length: 75
effective length of query: 276
effective length of database: 236,321
effective search space: 65224596
effective search space used: 65224596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)