HHsearch alignment for GI: 255764510 and conserved domain: cd01537

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=91.86  E-value=0.92  Score=23.87  Aligned_cols=199  Identities=13%  Similarity=0.051  Sum_probs=100.9

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             9999999879829994210000078-52001644758799984846--79998862001363000415899997641012
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
T Consensus        20 gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~---~~~~   96 (264)
T cd01537          20 GIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPDG---DRVP   96 (264)
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC---CCCE
T ss_conf             9999999869989999799998999999999997699999996798886899999997599799985667888---8871


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHH
Q ss_conf             2354445456789998642201277753897215675620-------14689846982567688750468-999889998
Q gi|255764510|r   91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKN  162 (232)
Q Consensus        91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~  162 (232)
T Consensus        97 ~V~---~d~~~~g~~~~~~l~~-~g~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  171 (264)
T cd01537          97 SVG---SDNEQAGYLAGEHLAE-KGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQE-GDWDAEKGYQAAEE  171 (264)
T ss_pred             EEE---ECHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCHHHHHHHHHH
T ss_conf             999---7779999999999986-298624530488777069999999999999779998537995-79998999999999


Q ss_pred             HHC---CCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf             623---7838998078999999971354405----80399718899999997699669987999988
Q gi|255764510|r  163 LLQ---NADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKNVVTVACFPKET  222 (232)
Q Consensus       163 ~~~---~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~  222 (232)
T Consensus       172 ~l~~~~~~dai~~~~d~~A~gv~~al~~~g~~ip~di~ivg~d~~~~~~--~~~p~ltti~~~~~~~  236 (264)
T cd01537         172 LLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTPEAL--LAGPPLTTVRQPPDEL  236 (264)
T ss_pred             HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH--HHCCCEEEEECCHHHH
T ss_conf             9850899769998986999999999997499999983999999749999--7199829998399999