HHsearch alignment for GI: 255764510 and conserved domain: cd01537
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=91.86 E-value=0.92 Score=23.87 Aligned_cols=199 Identities=13% Similarity=0.051 Sum_probs=100.9
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 9999999879829994210000078-52001644758799984846--79998862001363000415899997641012
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
T Consensus 20 gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~---~~~~ 96 (264)
T cd01537 20 GIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPDG---DRVP 96 (264)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC---CCCE
T ss_conf 9999999869989999799998999999999997699999996798886899999997599799985667888---8871
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHH
Q ss_conf 2354445456789998642201277753897215675620-------14689846982567688750468-999889998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~ 162 (232)
T Consensus 97 ~V~---~d~~~~g~~~~~~l~~-~g~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 171 (264)
T cd01537 97 SVG---SDNEQAGYLAGEHLAE-KGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQE-GDWDAEKGYQAAEE 171 (264)
T ss_pred EEE---ECHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCHHHHHHHHHH
T ss_conf 999---7779999999999986-298624530488777069999999999999779998537995-79998999999999
Q ss_pred HHC---CCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 623---7838998078999999971354405----80399718899999997699669987999988
Q gi|255764510|r 163 LLQ---NADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKNVVTVACFPKET 222 (232)
Q Consensus 163 ~~~---~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~ 222 (232)
T Consensus 172 ~l~~~~~~dai~~~~d~~A~gv~~al~~~g~~ip~di~ivg~d~~~~~~--~~~p~ltti~~~~~~~ 236 (264)
T cd01537 172 LLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTPEAL--LAGPPLTTVRQPPDEL 236 (264)
T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH--HHCCCEEEEECCHHHH
T ss_conf 9850899769998986999999999997499999983999999749999--7199829998399999