HHsearch alignment for GI: 255764510 and conserved domain: cd06270
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=90.07 E-value=1.4 Score=22.84 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=98.2
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 9999999879829994210000078-52001644758799984846-799988620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
T Consensus 20 ~ie~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~PvV~i~~~~~----~~~~~~ 95 (268)
T cd06270 20 GVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDDELIELAAQVPPLVLINRHIP----GLADRC 95 (268)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE
T ss_conf 9999999859999999589998999999999996599999995277998999999964998999867689----998988
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHH
Q ss_conf 354445456789998642201277753897215675620-------146898469825676887504689998-899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~ 163 (232)
T Consensus 96 V~---~Dn~~~~~~a~~~L~-~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~gl~~~~~~i~~~~~~~~~g~~~~~~l 171 (268)
T cd06270 96 IW---LDNEQGGYLATEHLI-ELGHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEGGYAAMQEL 171 (268)
T ss_pred EE---ECHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 98---388999999999999-83998389845988883199999999999998599978004761677678899988999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHH
Q ss_conf 2---37838998078999999971354405----803997188999999
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAI 205 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232)
T Consensus 172 l~~~~~~~ai~~~nD~~A~g~~~~l~~~g~~vP~disvigfdd~~~~~~ 220 (268)
T cd06270 172 LARGAPFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDDVLLARY 220 (268)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
T ss_conf 9569998745533779999999999982999999769999898689971