>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans

Probab=92.91 E-value=0.67 Score=24.67 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=98.3 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf 99999999879829994210000078-52001644758799984846-79998862001363000415899997641012 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) T Consensus 19 ~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIi~~~~~~~~~~~~l~~~~iPvV~id~~~~----~~~~~ 94 (265) T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFVDREIT----GSPIP 94 (265) T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCC----CCCCC T ss_conf 99999999859989999789998999999999994799999998067998999999966998998378689----99886 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH Q ss_conf 2354445456789998642201277753897215675620-------146898469825676887504689998-89998 Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232) Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232) T Consensus 95 ~V~---~d~~~~~~~a~~~L~-~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 170 (265) T cd06299 95 FVT---SDPQPGMTEAVSLLV-ALGHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATK 170 (265) T ss_pred EEE---ECHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHH T ss_conf 899---676999999999999-7499838860489887569999999999999769999930599840355789999999 Q ss_pred HH-CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHH Q ss_conf 62-37838998078999999971354405----803997188999999 Q gi|255764510|r 163 LL-QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAI 205 (232) Q Consensus 163 ~~-~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232) T Consensus 171 ~l~~~p~ai~~~nD~~A~g~~~~l~~~g~~vP~dvsvvgfd~~~~~~~ 218 (265) T cd06299 171 LLDQGATAIIAGDSMMTIGAIRAIHDAGLVIGEDISLIGFDDLPVFRL 218 (265) T ss_pred HHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH T ss_conf 996399854506858899999999983899999349999997588985

HHsearch alignment for GI: 255764510 and conserved domain: cd06299