Query gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs 102 out of 2643
Neff 9.6
Searched_HMMs 39220
Date Sat Jun 4 22:52:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764510.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09189 uroporphyrinogen-III 100.0 0 0 304.7 25.6 226 1-230 1-236 (237)
2 PRK05928 hemD uroporphyrinogen 100.0 1.4E-43 0 280.9 25.8 227 1-230 2-248 (252)
3 PRK05752 uroporphyrinogen-III 100.0 2E-42 0 273.9 25.3 230 1-230 4-249 (255)
4 cd06578 HemD Uroporphyrinogen- 100.0 3E-40 7E-45 260.8 24.1 223 3-228 1-239 (239)
5 COG1587 HemD Uroporphyrinogen- 100.0 8.9E-39 2.3E-43 252.0 24.4 228 1-231 2-244 (248)
6 PRK08811 uroporphyrinogen-III 100.0 1.6E-36 4E-41 238.5 23.4 224 2-229 18-255 (264)
7 pfam02602 HEM4 Uroporphyrinoge 100.0 9.4E-37 2.4E-41 239.8 21.7 209 14-226 2-229 (229)
8 PRK06975 bifunctional uroporph 100.0 7.3E-35 1.9E-39 228.5 21.7 227 1-229 4-263 (653)
9 KOG4132 consensus 100.0 6.5E-29 1.6E-33 192.8 17.9 227 3-230 6-253 (260)
10 PRK07239 bifunctional uroporph 99.9 3.7E-21 9.4E-26 146.3 19.3 224 2-229 13-273 (381)
11 PRK07168 bifunctional uroporph 99.9 1.8E-20 4.5E-25 142.2 14.8 191 2-213 253-458 (474)
12 PRK05928 hemD uroporphyrinogen 99.3 1.7E-11 4.4E-16 88.2 11.4 115 116-230 1-121 (252)
13 COG1587 HemD Uroporphyrinogen- 99.2 1.7E-10 4.3E-15 82.3 10.7 114 116-230 1-118 (248)
14 cd06578 HemD Uroporphyrinogen- 99.2 1.4E-10 3.7E-15 82.7 9.9 112 119-230 1-117 (239)
15 PRK05752 uroporphyrinogen-III 99.1 1E-09 2.6E-14 77.6 10.5 113 115-227 2-119 (255)
16 PRK09189 uroporphyrinogen-III 99.1 7.5E-10 1.9E-14 78.4 9.3 110 118-231 2-111 (237)
17 pfam02602 HEM4 Uroporphyrinoge 99.0 6.5E-09 1.6E-13 72.8 11.3 99 130-230 2-110 (229)
18 PRK07168 bifunctional uroporph 98.9 8.8E-09 2.3E-13 72.0 8.4 98 114-212 249-351 (474)
19 PRK08811 uroporphyrinogen-III 98.7 2.4E-07 6.1E-12 63.4 10.3 111 117-227 17-129 (264)
20 PRK06975 bifunctional uroporph 98.5 1.9E-06 4.7E-11 58.0 10.4 112 117-228 4-130 (653)
21 PRK07239 bifunctional uroporph 98.2 2.6E-05 6.7E-10 51.1 10.3 98 12-109 159-275 (381)
22 PRK11790 D-3-phosphoglycerate 96.9 0.016 4E-07 34.5 9.7 171 1-177 11-214 (409)
23 KOG4132 consensus 96.5 0.027 7E-07 33.0 8.8 95 13-107 146-252 (260)
24 PRK00257 erythronate-4-phospha 96.0 0.095 2.4E-06 29.8 9.3 164 1-178 1-179 (379)
25 PRK13243 glyoxylate reductase; 95.6 0.13 3.4E-06 28.9 8.7 169 2-179 4-217 (333)
26 PRK13581 D-3-phosphoglycerate 95.0 0.25 6.3E-06 27.3 8.5 170 1-178 1-204 (524)
27 cd06290 PBP1_LacI_like_9 Ligan 93.7 0.5 1.3E-05 25.4 11.0 180 14-201 20-215 (265)
28 PRK08410 2-hydroxyacid dehydro 93.3 0.59 1.5E-05 25.0 8.1 171 1-179 1-209 (311)
29 cd06299 PBP1_LacI_like_13 Liga 92.9 0.67 1.7E-05 24.7 12.9 185 13-205 19-218 (265)
30 cd06284 PBP1_LacI_like_6 Ligan 92.4 0.8 2E-05 24.2 12.8 189 13-210 19-224 (267)
31 COG1609 PurR Transcriptional r 92.3 0.81 2.1E-05 24.2 11.1 179 14-200 79-275 (333)
32 cd01537 PBP1_Repressors_Sugar_ 91.9 0.92 2.3E-05 23.9 11.9 199 14-222 20-236 (264)
33 pfam00389 2-Hacid_dh D-isomer 91.7 0.95 2.4E-05 23.8 9.1 142 3-151 1-172 (313)
34 cd01575 PBP1_GntR Ligand-bindi 91.0 1.1 2.9E-05 23.3 12.6 179 14-200 20-215 (268)
35 cd06291 PBP1_Qymf_like Ligand 90.9 1.1 2.9E-05 23.3 11.8 179 14-204 20-215 (265)
36 cd06288 PBP1_sucrose_transcrip 90.4 1.3 3.2E-05 23.0 9.9 179 14-200 21-215 (269)
37 cd06277 PBP1_LacI_like_1 Ligan 90.2 1.3 3.4E-05 22.9 12.7 181 12-202 21-217 (268)
38 cd06270 PBP1_GalS_like Ligand 90.1 1.4 3.5E-05 22.8 13.2 184 14-205 20-220 (268)
39 PRK08250 glutamine amidotransf 90.0 0.62 1.6E-05 24.9 4.6 51 1-56 1-53 (235)
40 cd06267 PBP1_LacI_sugar_bindin 89.6 1.5 3.8E-05 22.6 10.5 183 13-203 19-218 (264)
41 PRK08605 D-lactate dehydrogena 88.9 1.7 4.3E-05 22.3 9.9 174 1-179 2-213 (332)
42 cd06268 PBP1_ABC_transporter_L 88.1 1.9 4.8E-05 22.0 11.4 148 48-197 66-222 (298)
43 cd01542 PBP1_TreR_like Ligand- 87.8 2 5E-05 21.9 10.9 186 14-211 20-222 (259)
44 cd06285 PBP1_LacI_like_7 Ligan 87.8 2 5E-05 21.9 11.1 180 13-202 19-215 (265)
45 cd06281 PBP1_LacI_like_5 Ligan 87.6 2 5.1E-05 21.8 12.3 182 14-204 20-218 (269)
46 cd06342 PBP1_ABC_LIVBP_like Ty 87.0 2.2 5.6E-05 21.6 9.6 148 47-196 65-221 (334)
47 cd06294 PBP1_ycjW_transcriptio 86.5 2.3 5.9E-05 21.4 12.5 183 14-203 25-224 (270)
48 cd06338 PBP1_ABC_ligand_bindin 86.4 2.4 6.1E-05 21.4 8.1 145 48-194 71-225 (345)
49 cd06343 PBP1_ABC_ligand_bindin 85.9 2.5 6.4E-05 21.2 8.3 88 103-191 131-225 (362)
50 PRK02261 methylaspartate mutas 85.3 2.7 6.8E-05 21.1 9.4 95 128-229 20-131 (137)
51 cd06273 PBP1_GntR_like_1 This 84.1 3 7.7E-05 20.8 12.2 190 14-211 20-227 (268)
52 cd02072 Glm_B12_BD B12 binding 84.1 3 7.7E-05 20.7 9.2 96 127-229 15-127 (128)
53 COG0683 LivK ABC-type branched 82.4 3.6 9.1E-05 20.3 6.1 176 15-194 37-232 (366)
54 cd06360 PBP1_alkylbenzenes_lik 82.4 3.6 9.1E-05 20.3 8.0 142 47-190 64-214 (336)
55 cd06335 PBP1_ABC_ligand_bindin 82.2 3.6 9.3E-05 20.3 11.5 92 103-195 125-223 (347)
56 COG2185 Sbm Methylmalonyl-CoA 82.1 3.6 9.3E-05 20.3 6.5 102 124-230 25-136 (143)
57 cd06327 PBP1_SBP_like_1 Peripl 80.8 4.1 0.0001 20.0 8.4 144 46-191 64-216 (334)
58 cd06295 PBP1_CelR Ligand bindi 80.2 4.3 0.00011 19.9 12.4 181 12-201 29-225 (275)
59 cd06292 PBP1_LacI_like_10 Liga 79.7 4.4 0.00011 19.8 12.1 181 14-201 20-220 (273)
60 PRK11553 alkanesulfonate trans 79.4 4.5 0.00011 19.7 5.1 129 48-183 57-193 (314)
61 PRK06436 glycerate dehydrogena 79.2 4.6 0.00012 19.7 6.3 63 114-179 120-186 (303)
62 cd06296 PBP1_CatR_like Ligand- 79.1 4.6 0.00012 19.7 10.9 181 14-201 20-217 (270)
63 PRK05723 flavodoxin; Provision 78.9 4.4 0.00011 19.8 4.7 53 1-59 1-59 (151)
64 COG4635 HemG Flavodoxin [Energ 78.8 4.3 0.00011 19.8 4.6 50 1-57 1-56 (175)
65 cd06293 PBP1_LacI_like_11 Liga 78.7 4.7 0.00012 19.6 13.5 180 14-201 20-216 (269)
66 KOG2836 consensus 78.5 3.3 8.5E-05 20.5 4.0 65 1-65 17-86 (173)
67 PRK09271 flavodoxin; Provision 78.2 4.9 0.00012 19.5 5.6 53 1-56 1-59 (160)
68 cd06275 PBP1_PurR Ligand-bindi 78.0 5 0.00013 19.5 10.8 183 14-204 20-220 (269)
69 cd06278 PBP1_LacI_like_2 Ligan 77.5 5.2 0.00013 19.4 9.4 178 14-201 20-214 (266)
70 cd06298 PBP1_CcpA_like Ligand- 77.1 5.3 0.00014 19.3 12.1 184 14-205 20-220 (268)
71 cd06346 PBP1_ABC_ligand_bindin 76.9 5.4 0.00014 19.3 7.6 80 115-195 136-222 (312)
72 cd06271 PBP1_AglR_RafR_like Li 76.2 5.6 0.00014 19.1 13.1 185 13-205 23-224 (268)
73 cd06334 PBP1_ABC_ligand_bindin 75.7 5.8 0.00015 19.1 10.5 96 113-208 137-242 (351)
74 pfam07090 DUF1355 Protein of u 75.2 3.3 8.5E-05 20.5 3.2 48 8-56 27-74 (183)
75 cd06282 PBP1_GntR_like_2 Ligan 74.9 6.1 0.00015 19.0 11.1 187 13-210 19-224 (266)
76 PRK06487 glycerate dehydrogena 72.3 7 0.00018 18.6 9.0 168 1-177 1-208 (317)
77 COG1184 GCD2 Translation initi 71.9 6.1 0.00016 18.9 3.9 19 200-218 212-230 (301)
78 PRK11041 DNA-binding transcrip 71.6 7.3 0.00019 18.5 11.7 94 112-205 180-288 (341)
79 pfam04016 DUF364 Domain of unk 71.3 7.4 0.00019 18.4 9.9 144 74-229 75-229 (229)
80 cd01536 PBP1_ABC_sugar_binding 71.0 7.5 0.00019 18.4 12.6 206 14-225 20-243 (267)
81 pfam03358 FMN_red NADPH-depend 70.6 7.7 0.0002 18.3 6.6 12 165-176 67-78 (147)
82 cd01545 PBP1_SalR Ligand-bindi 69.3 8.2 0.00021 18.2 12.6 184 14-205 20-222 (270)
83 PRK12480 D-lactate dehydrogena 68.7 8.4 0.00022 18.1 11.4 173 1-179 2-211 (330)
84 cd04509 PBP1_ABC_transporter_G 68.6 8.5 0.00022 18.1 9.3 141 48-190 67-216 (299)
85 cd06287 PBP1_LacI_like_8 Ligan 68.3 8.6 0.00022 18.0 13.1 176 14-202 28-218 (269)
86 cd06286 PBP1_CcpB_like Ligand- 68.2 8.6 0.00022 18.0 12.0 180 14-203 20-216 (260)
87 cd06326 PBP1_STKc_like Type I 67.7 8.8 0.00022 18.0 8.5 82 115-197 135-223 (336)
88 PRK06932 glycerate dehydrogena 67.0 9.1 0.00023 17.9 6.5 63 114-179 145-210 (314)
89 PRK11823 DNA repair protein Ra 66.0 9 0.00023 17.9 3.8 21 197-218 407-427 (454)
90 PRK10014 DNA-binding transcrip 64.3 10 0.00026 17.6 12.4 189 15-211 86-301 (342)
91 cd06349 PBP1_ABC_ligand_bindin 64.1 10 0.00026 17.5 7.2 97 103-200 122-225 (340)
92 cd01544 PBP1_GalR Ligand-bindi 63.5 11 0.00027 17.5 12.8 171 14-200 25-217 (270)
93 cd06283 PBP1_RegR_EndR_KdgR_li 63.3 11 0.00027 17.5 11.6 180 13-200 19-216 (267)
94 COG1066 Sms Predicted ATP-depe 62.9 11 0.00028 17.4 3.9 29 192-220 404-432 (456)
95 TIGR00868 hCaCC calcium-activa 62.5 7 0.00018 18.6 2.7 60 170-229 412-477 (874)
96 COG1366 SpoIIAA Anti-anti-sigm 62.3 11 0.00029 17.3 5.0 61 167-227 51-114 (117)
97 PRK09423 gldA glycerol dehydro 62.3 11 0.00029 17.3 6.6 30 201-230 325-354 (366)
98 cd02071 MM_CoA_mut_B12_BD meth 62.3 11 0.00029 17.3 8.7 96 126-228 14-120 (122)
99 PRK10675 UDP-galactose-4-epime 61.4 12 0.0003 17.2 4.0 29 1-29 1-30 (338)
100 cd06319 PBP1_ABC_sugar_binding 61.0 12 0.0003 17.2 11.4 200 15-223 21-245 (277)
101 PRK10703 DNA-binding transcrip 60.0 12 0.00031 17.1 11.9 92 112-203 174-280 (335)
102 cd01574 PBP1_LacI Ligand-bindi 58.9 13 0.00033 17.0 13.0 178 14-202 20-214 (264)
103 PRK11104 hemG protoporphyrinog 58.8 13 0.00033 17.0 4.2 48 1-56 1-54 (177)
104 cd06279 PBP1_LacI_like_3 Ligan 58.4 13 0.00033 16.9 9.6 176 13-200 24-233 (283)
105 TIGR02201 heptsyl_trn_III lipo 56.4 14 0.00036 16.7 4.9 31 199-229 206-237 (347)
106 COG2604 Uncharacterized protei 55.5 15 0.00037 16.7 3.3 30 117-150 248-277 (594)
107 PRK11303 DNA-binding transcrip 54.6 15 0.00039 16.6 10.7 98 104-204 168-280 (330)
108 cd06347 PBP1_ABC_ligand_bindin 54.6 15 0.00039 16.6 10.3 146 47-195 66-221 (334)
109 PRK06372 translation initiatio 54.6 15 0.00037 16.7 3.2 19 165-184 133-151 (253)
110 PRK10423 transcriptional repre 54.6 15 0.00039 16.5 11.1 90 113-202 171-275 (327)
111 cd06333 PBP1_ABC-type_HAAT_lik 54.5 15 0.00039 16.5 9.4 144 48-195 66-218 (312)
112 PRK07567 glutamine amidotransf 54.0 16 0.0004 16.5 3.7 54 1-56 1-59 (242)
113 cd06289 PBP1_MalI_like Ligand- 53.0 16 0.00041 16.4 13.9 199 14-222 20-236 (268)
114 cd06337 PBP1_ABC_ligand_bindin 52.3 17 0.00042 16.3 8.1 67 131-198 168-236 (357)
115 cd06280 PBP1_LacI_like_4 Ligan 51.9 17 0.00043 16.3 12.2 188 14-211 20-221 (263)
116 PRK11480 tauA taurine transpor 51.5 17 0.00044 16.2 4.8 124 48-177 52-180 (320)
117 TIGR00021 rpiA ribose 5-phosph 51.2 17 0.00044 16.2 3.9 48 172-219 21-74 (236)
118 cd06348 PBP1_ABC_ligand_bindin 50.7 18 0.00045 16.2 7.4 83 112-195 132-222 (344)
119 PRK08335 translation initiatio 50.6 18 0.00045 16.2 3.1 105 115-221 109-223 (276)
120 cd01741 GATase1_1 Subgroup of 49.7 18 0.00046 16.1 4.3 55 3-60 4-59 (188)
121 TIGR01501 MthylAspMutase methy 49.0 19 0.00048 16.0 8.5 102 123-230 13-130 (134)
122 PRK11062 nhaR transcriptional 48.8 19 0.00048 16.0 4.9 109 115-231 118-234 (296)
123 KOG0068 consensus 48.6 19 0.00048 16.0 11.3 207 1-229 6-251 (406)
124 PRK03619 phosphoribosylformylg 48.0 19 0.00049 15.9 4.8 47 1-57 1-49 (223)
125 PRK05568 flavodoxin; Provision 47.6 20 0.0005 15.9 9.3 39 12-57 19-57 (142)
126 TIGR01137 cysta_beta cystathio 47.0 20 0.00051 15.8 2.9 31 2-32 90-120 (527)
127 cd01121 Sms Sms (bacterial rad 46.7 20 0.00052 15.8 3.9 61 115-177 109-169 (372)
128 PRK08306 dipicolinate synthase 46.6 20 0.00052 15.8 16.2 216 1-219 3-266 (296)
129 cd06317 PBP1_ABC_sugar_binding 45.7 21 0.00054 15.7 12.5 200 15-223 22-247 (275)
130 PRK13978 ribose-5-phosphate is 44.8 22 0.00056 15.6 7.0 15 157-171 189-203 (228)
131 TIGR02639 ClpA ATP-dependent C 44.6 22 0.00056 15.6 7.7 97 120-229 275-383 (774)
132 COG0647 NagD Predicted sugar p 44.3 22 0.00056 15.6 4.1 88 6-94 23-116 (269)
133 cd06297 PBP1_LacI_like_12 Liga 43.9 22 0.00057 15.5 11.1 177 14-201 20-219 (269)
134 pfam03698 UPF0180 Uncharacteri 43.0 23 0.00059 15.4 4.2 44 2-59 3-46 (80)
135 PRK07053 glutamine amidotransf 42.7 23 0.0006 15.4 5.1 54 2-60 4-60 (235)
136 TIGR03466 HpnA hopanoid-associ 42.5 24 0.0006 15.4 3.9 29 1-29 1-30 (328)
137 cd06336 PBP1_ABC_ligand_bindin 41.9 24 0.00062 15.3 10.3 82 114-196 136-225 (347)
138 TIGR01457 HAD-SF-IIA-hyp2 HAD- 41.1 25 0.00063 15.3 4.1 83 9-92 19-107 (251)
139 PRK03094 hypothetical protein; 40.9 25 0.00064 15.3 4.1 40 9-59 7-46 (80)
140 TIGR00978 asd_EA aspartate-sem 40.9 25 0.00064 15.2 4.0 83 8-90 89-189 (358)
141 cd06345 PBP1_ABC_ligand_bindin 40.5 25 0.00065 15.2 8.0 143 47-190 66-224 (344)
142 pfam11731 Cdd1 Pathogenicity l 40.3 14 0.00037 16.7 1.3 34 196-229 19-52 (92)
143 LOAD_surE consensus 40.0 26 0.00066 15.2 4.3 30 1-30 1-35 (192)
144 PRK10669 putative cation:proto 39.6 26 0.00067 15.1 6.3 111 117-229 418-548 (558)
145 cd06274 PBP1_FruR Ligand bindi 38.6 27 0.00069 15.0 12.8 190 13-210 19-226 (264)
146 cd00853 NifX NifX belongs to a 38.1 28 0.00071 15.0 4.3 38 192-229 65-102 (102)
147 cd06303 PBP1_LuxPQ_Quorum_Sens 37.2 29 0.00073 14.9 13.5 213 14-229 21-258 (280)
148 cd04883 ACT_AcuB C-terminal AC 37.1 27 0.0007 15.0 2.3 21 129-149 16-36 (72)
149 PRK07588 hypothetical protein; 37.1 29 0.00073 14.9 7.2 54 1-65 1-54 (391)
150 COG4558 ChuT ABC-type hemin tr 36.7 29 0.00075 14.8 4.0 87 116-208 178-291 (300)
151 PRK00702 ribose-5-phosphate is 36.1 30 0.00076 14.8 6.6 16 12-27 55-70 (222)
152 PRK07765 para-aminobenzoate sy 36.0 30 0.00076 14.8 4.3 53 1-56 1-54 (221)
153 PRK09739 hypothetical protein; 36.0 30 0.00076 14.8 5.6 58 1-58 4-89 (201)
154 PRK10727 DNA-binding transcrip 36.0 30 0.00076 14.8 10.9 101 112-212 172-287 (342)
155 TIGR00060 L18_bact ribosomal p 35.9 30 0.00077 14.8 3.0 92 133-229 14-108 (118)
156 KOG3107 consensus 35.7 30 0.00077 14.8 5.2 45 186-230 419-465 (468)
157 COG1936 Predicted nucleotide k 35.1 31 0.00079 14.7 2.8 30 1-30 1-31 (180)
158 KOG0333 consensus 34.7 31 0.0008 14.7 3.6 93 49-145 453-547 (673)
159 cd01398 RPI_A RPI_A: Ribose 5- 34.5 32 0.00081 14.6 6.3 12 15-26 54-65 (213)
160 TIGR01968 minD_bact septum sit 34.4 24 0.0006 15.4 1.7 20 48-67 113-132 (272)
161 cd06306 PBP1_TorT-like TorT-li 33.9 32 0.00083 14.6 11.4 202 17-225 23-245 (268)
162 PRK13663 hypothetical protein; 33.8 33 0.00083 14.6 5.9 35 3-37 111-147 (493)
163 PRK08340 glucose-1-dehydrogena 33.6 33 0.00083 14.6 4.4 29 1-29 1-30 (259)
164 TIGR03567 FMN_reduc_SsuE FMN r 33.3 33 0.00085 14.5 7.1 18 14-31 21-38 (171)
165 pfam08903 DUF1846 Domain of un 33.1 33 0.00085 14.5 6.0 35 3-37 110-146 (491)
166 cd06366 PBP1_GABAb_receptor Li 33.0 34 0.00085 14.5 9.7 77 114-190 133-217 (350)
167 PRK05884 short chain dehydroge 32.7 34 0.00086 14.5 4.4 29 1-29 1-30 (223)
168 cd01976 Nitrogenase_MoFe_alpha 31.8 35 0.0009 14.4 13.7 167 11-187 186-370 (421)
169 pfam03853 YjeF_N YjeF-related 31.4 36 0.00091 14.3 4.8 38 114-151 26-67 (170)
170 pfam00456 Transketolase_N Tran 30.9 36 0.00093 14.3 3.6 19 47-65 53-71 (333)
171 PRK10446 ribosomal protein S6 30.8 37 0.00093 14.3 4.4 54 1-54 1-63 (300)
172 TIGR01452 PGP_euk phosphoglyco 29.3 39 0.00099 14.1 4.9 90 8-97 19-117 (288)
173 PRK03348 DNA polymerase IV; Pr 29.0 39 0.001 14.1 5.6 58 165-226 159-216 (456)
174 cd01965 Nitrogenase_MoFe_beta_ 27.6 42 0.0011 13.9 16.2 203 9-215 168-395 (428)
175 PRK08017 short chain dehydroge 27.6 42 0.0011 13.9 2.0 27 3-29 5-32 (256)
176 cd06329 PBP1_SBP_like_3 Peripl 27.4 42 0.0011 13.9 9.4 104 105-208 132-247 (342)
177 PRK06242 flavodoxin; Provision 26.4 44 0.0011 13.8 4.6 48 1-57 1-52 (150)
178 COG0120 RpiA Ribose 5-phosphat 26.1 44 0.0011 13.8 6.2 11 15-25 58-68 (227)
179 pfam02310 B12-binding B12 bind 26.0 44 0.0011 13.8 6.8 92 130-227 19-120 (121)
180 TIGR02128 G6PI_arch bifunction 25.9 45 0.0011 13.7 6.3 49 50-98 74-129 (338)
181 COG2894 MinD Septum formation 25.8 45 0.0011 13.7 2.2 21 47-67 112-132 (272)
182 cd06340 PBP1_ABC_ligand_bindin 25.6 45 0.0012 13.7 9.3 145 47-193 69-227 (347)
183 COG2249 MdaB Putative NADPH-qu 25.6 45 0.0012 13.7 2.1 55 1-55 1-74 (189)
184 cd06272 PBP1_hexuronate_repres 25.5 45 0.0012 13.7 14.5 186 14-211 20-221 (261)
185 KOG0953 consensus 25.0 46 0.0012 13.6 5.4 87 120-206 308-402 (700)
186 PRK10569 NAD(P)H-dependent FMN 25.0 46 0.0012 13.6 7.1 35 1-35 1-43 (191)
187 pfam06506 PrpR_N Propionate ca 24.7 47 0.0012 13.6 15.3 149 48-229 8-159 (169)
188 COG4634 Uncharacterized protei 24.5 47 0.0012 13.6 2.4 28 1-30 1-28 (113)
189 PRK01424 S-adenosylmethionine: 23.7 49 0.0013 13.5 7.4 91 113-210 192-288 (366)
190 cd03129 GAT1_Peptidase_E_like 23.1 51 0.0013 13.4 4.7 56 8-65 42-97 (210)
191 COG0027 PurT Formate-dependent 22.8 51 0.0013 13.4 6.2 28 2-29 14-41 (394)
192 PRK09065 glutamine amidotransf 22.6 52 0.0013 13.4 6.6 41 14-60 28-69 (238)
193 cd06330 PBP1_Arsenic_SBP_like 22.4 52 0.0013 13.3 9.4 143 47-189 66-219 (346)
194 PRK06703 flavodoxin; Provision 22.3 52 0.0013 13.3 3.0 40 11-57 18-57 (151)
195 pfam04392 ABC_sub_bind ABC tra 22.0 53 0.0014 13.3 9.5 157 14-180 19-197 (292)
196 cd02068 radical_SAM_B12_BD B12 22.0 53 0.0014 13.3 7.5 16 14-29 7-22 (127)
197 PRK05569 flavodoxin; Provision 21.8 54 0.0014 13.3 9.5 28 200-227 102-132 (141)
198 COG0021 TktA Transketolase [Ca 21.8 54 0.0014 13.3 3.8 22 166-187 548-569 (663)
199 PRK10816 DNA-binding transcrip 21.3 55 0.0014 13.2 6.3 100 1-105 1-111 (223)
200 pfam01094 ANF_receptor Recepto 21.2 55 0.0014 13.2 10.6 74 116-189 119-201 (344)
201 cd01541 PBP1_AraR Ligand-bindi 21.1 56 0.0014 13.2 11.1 179 13-199 19-220 (273)
202 COG0111 SerA Phosphoglycerate 21.0 56 0.0014 13.2 5.9 135 44-179 41-210 (324)
203 pfam03709 OKR_DC_1_N Orn/Lys/A 20.7 57 0.0014 13.1 4.3 65 11-79 5-72 (111)
204 TIGR00232 tktlase_bact transke 20.6 57 0.0015 13.1 2.9 103 96-200 476-595 (675)
205 TIGR02311 HpaI 2,4-dihydroxyhe 20.5 11 0.00029 17.3 -2.1 30 39-68 24-56 (249)
206 TIGR01768 GGGP-family geranylg 20.4 57 0.0015 13.1 4.3 23 9-31 41-64 (242)
207 PRK08594 enoyl-(acyl carrier p 20.3 58 0.0015 13.1 5.9 65 2-68 8-81 (256)
208 TIGR01368 CPSaseIIsmall carbam 20.2 58 0.0015 13.1 5.8 78 119-205 199-284 (383)
209 PRK06490 glutamine amidotransf 20.1 58 0.0015 13.1 6.6 54 2-60 13-69 (243)
210 cd01391 Periplasmic_Binding_Pr 20.1 58 0.0015 13.0 11.3 153 46-203 56-222 (269)
211 pfam00994 MoCF_biosynth Probab 20.1 58 0.0015 13.0 2.3 21 12-32 19-39 (140)
212 PRK10653 D-ribose transporter 20.1 58 0.0015 13.0 11.2 200 14-225 47-268 (295)
213 PRK07261 topology modulation p 20.0 59 0.0015 13.0 3.1 36 1-36 1-38 (171)
No 1
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=0 Score=304.68 Aligned_cols=226 Identities=34% Similarity=0.582 Sum_probs=202.4
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH---CCCCCEECCC
Q ss_conf 9389858968869999999987982999421000007852001644758799984846799988620---0136300041
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF---CRHTPIFAIG 77 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~---~~~~~~~~vg 77 (232)
||||||||.+++.+++..|++.|++++++|++++++.++... ..+.+||||+|||+|||+++.... +.+.+++|||
T Consensus 1 MrILvTRP~~~a~~l~~~L~~~G~~~~~~Pll~i~~~~~~~~-~~l~~~~~lifTS~NaVr~l~~~~~~~~~~~p~~aVG 79 (237)
T PRK09189 1 MRVLVTRPEPSAERTAARLRAMGHEPVLLPLSRTVHLSFAAP-DAAEPFGAIAVTSANAVRHLSPERLLPHLALPLFAVG 79 (237)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCEECCCCHHC-CCCCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 939993867779999999997799899878610554871001-1256667899971899998758742426598399985
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH
Q ss_conf 58999976410122354445456789998642201277753897215675620146898469825676887504689998
Q gi|255764510|r 78 EASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE 157 (232)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~ 157 (232)
.+|++++++.|+....+..++++.+.+++... ..++++++|++|.+++++|.+.|+++|+.|+++++|++++.....
T Consensus 80 ~~TA~~l~~~G~~~v~~~~g~ae~L~~li~~~---~~~~~~vL~~~G~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~ 156 (237)
T PRK09189 80 EGTAEAAQEAGFTSVIEGGGDAVRLAETVAAA---LAPGERLLYLAGRPRQPVFEDRLAAAGISFRVAECYDTLPVMYSP 156 (237)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH---CCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCC
T ss_conf 99999999729955135877899999999973---557994798548754046799998789869999887542488897
Q ss_pred HHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-----CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 8999862--3783899807899999997135440-----58039971889999999769966998799998899999861
Q gi|255764510|r 158 TTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-----ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 158 ~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-----~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
+.+..++ ..+|+|+|||+++++.|++++..+. .+.+++|||++||+++++.||+.+.||+.|++++|+++|++
T Consensus 157 ~~~~~~l~~~~~d~vl~~S~~ta~~f~~l~~~~~l~~~~~~~~~~ciS~~vA~~l~~~~~~~v~vA~~P~~~all~~L~~ 236 (237)
T PRK09189 157 ATLSAILGGAPFDAVLLYSRVAAASFFEAMRLSIAPPADEKTRFLCISARVAQALPSGLLQQALVADHPDEKALLRLLSK 236 (237)
T ss_pred HHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHCCCEEEECHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 99999996499888999898999999999876145368858979998999999998669977998799997999999842
No 2
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=1.4e-43 Score=280.87 Aligned_cols=227 Identities=24% Similarity=0.293 Sum_probs=191.7
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC----CCCCCCCCCEEEEECHHHHHHHHHHHCC-------
Q ss_conf 93898589688699999999879829994210000078520----0164475879998484679998862001-------
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV----FLAMQQSYGAIAITSSESLSTLPANFCR------- 69 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~----~~~~~~~~d~iiftS~~av~~~~~~~~~------- 69 (232)
||||||||.+++.+++.+|++.|++++++|+++++|..... ....++.||||||||+|||++|+.....
T Consensus 2 ~~IlvTRp~~~~~~l~~~L~~~G~~~~~~Pli~i~p~~~~~~~~~~~~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~~ 81 (252)
T PRK05928 2 MKILLTRPSPAGEELVELLRKLGFVALHLPLIEFEPGRSLPQLADALAFLGEADAVIFTSKNAVEFLLSALKKKGLKWPL 81 (252)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCC
T ss_conf 98998697788999999999889969996788888888737799998515687889998889999999999852987534
Q ss_pred CCCEECCCHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEE
Q ss_conf 3630004158999976410122354-445456789998642201277753897215675620146898469825676887
Q gi|255764510|r 70 HTPIFAIGEASACLARQKGFTQIFH-GKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCY 148 (232)
Q Consensus 70 ~~~~~~vg~~t~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY 148 (232)
..+++|+|++|++++++.|+..... ..+.++.+...+.. ...+++++++++|..++++|.+.|++.|+.|.++++|
T Consensus 82 ~~~i~aVG~~Ta~~L~~~G~~~~~~p~~~~~~~l~~~l~~---~~~~~~~vL~~~g~~~~~~L~~~L~~~g~~v~~~~~Y 158 (252)
T PRK05928 82 LAKYAAIGEKTALALKKLGGKPVFVPEDGEGSELLLELPE---LNLPGKRVLYLRGNGGRPLLGDFLQERGADVDECEVY 158 (252)
T ss_pred CCEEEEECHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHH---CCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEEE
T ss_conf 8849999899999999719986052999867999999874---1778987999816766657899999779847999865
Q ss_pred EECCCCCCH-HHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-----CCEEEEECCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 504689998-8999862--3783899807899999997135440-----5803997188999999976996699879999
Q gi|255764510|r 149 YSQDIAYPE-TTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-----ISAAFLCLSNNIASAIPASYKNVVTVACFPK 220 (232)
Q Consensus 149 ~~~~~~~~~-~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-----~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~ 220 (232)
++++.+... ......+ +++|+|+|||++++++|++++.... .+..++|||++||+++++.|++++++|+.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~i~ftS~~~v~~~~~~~~~~~~~~~~~~~~iv~ig~~ta~~~~~~G~~~~~~a~~~~ 238 (252)
T PRK05928 159 ERKPPKLEGAEELIEELQTGEVDAIIFTSPSMVRAFLSLAPELYRRHWLLRCRAVAIGKRTAEALKELGVKVVIVPDNAD 238 (252)
T ss_pred EEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCHHHHHCCEEEEECHHHHHHHHHCCCCCEEEECCCC
T ss_conf 76378888279999998628987999909999999999866403025651887999899999999986998179849999
Q ss_pred HHHHHHHHHH
Q ss_conf 8899999861
Q gi|255764510|r 221 ETSLLKLLPL 230 (232)
Q Consensus 221 ~~~ll~al~~ 230 (232)
.++|+++|.+
T Consensus 239 ~~~lv~al~~ 248 (252)
T PRK05928 239 NEALLRALKK 248 (252)
T ss_pred HHHHHHHHHH
T ss_conf 7999999999
No 3
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=2e-42 Score=273.89 Aligned_cols=230 Identities=16% Similarity=0.182 Sum_probs=194.0
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCC----CCCCCCCCEEEEECHHHHHHHHHHHCC------C
Q ss_conf 938985896886999999998798299942100000785200----164475879998484679998862001------3
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVF----LAMQQSYGAIAITSSESLSTLPANFCR------H 70 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~----~~~~~~~d~iiftS~~av~~~~~~~~~------~ 70 (232)
+|||||||.+++..++..|++.|++++++|+++|+|+++... ..+++.|||+||||+|||++++..+.+ .
T Consensus 4 ~rVLVTRP~~qa~~L~~~L~~~G~~~~~~Pli~I~p~~~~~~~~~~l~~l~~~d~vifvS~nAv~~~~~~l~~~~~~~~~ 83 (255)
T PRK05752 4 WRLLLTRPAEDCAALAASLAEAGIHSSSLPLLAIEPLPLTPEQRALLLELDRYCAVIVVSKPAARLGLELLDEYWPQPPQ 83 (255)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCC
T ss_conf 78998097788999999999779978972888984289977899998628886889998779999999999862889533
Q ss_pred CCEECCCHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEE
Q ss_conf 63000415899997641012235444-54567899986422012777538972156756201468984698256768875
Q gi|255764510|r 71 TPIFAIGEASACLARQKGFTQIFHGK-DNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYY 149 (232)
Q Consensus 71 ~~~~~vg~~t~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~ 149 (232)
.+++++|++|++++.+.|.....++. .+++.+.++..........+++|++++|+++|+.|.+.|+++|+.|+++++|+
T Consensus 84 ~~~~AVG~~TA~aL~~~G~~v~~p~~~~~SE~LL~lp~l~~~~~~~g~rVLi~rG~gGR~~L~~~L~~rGa~V~~~~~Yr 163 (255)
T PRK05752 84 QPWFSVGAATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDYLELYR 163 (255)
T ss_pred CEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 82899889999999976998244898777678860554542204778879998167617899999998899898998788
Q ss_pred ECCCCCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHH---HCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 046899988999862--378389980789999999713544---058039971889999999769966998799998899
Q gi|255764510|r 150 SQDIAYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPA---KISAAFLCLSNNIASAIPASYKNVVTVACFPKETSL 224 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~---~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~l 224 (232)
++.+......+...+ +++|+|+|||++++++|.++.... .....++|+|++||+.+++.||+++.+++.++.++|
T Consensus 164 R~~p~~~~~~~~~~~~~~~id~i~~TS~e~l~~l~~l~~~~~~~l~~~~lvv~s~RiA~~A~~lG~~~v~~a~~as~~al 243 (255)
T PRK05752 164 RCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEHLLQLAGADWPELARLPLFVPSPRVAEQARAAGAQRVVDCRGASAAAL 243 (255)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCEEECCCCCHHHH
T ss_conf 43899984999999980899999988199999999971045798638839983899999999869996688999997999
Q ss_pred HHHHHH
Q ss_conf 999861
Q gi|255764510|r 225 LKLLPL 230 (232)
Q Consensus 225 l~al~~ 230 (232)
++||.+
T Consensus 244 l~AL~~ 249 (255)
T PRK05752 244 LAALRR 249 (255)
T ss_pred HHHHHH
T ss_conf 999998
No 4
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=100.00 E-value=3e-40 Score=260.84 Aligned_cols=223 Identities=21% Similarity=0.202 Sum_probs=191.1
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHH-------CCCCC
Q ss_conf 898589688699999999879829994210000078520---01644758799984846799988620-------01363
Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANF-------CRHTP 72 (232)
Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~-------~~~~~ 72 (232)
||||||.+++.+++..|+++|++++++|+++++|.+... ....+.+||||||||+|||+++...+ ....+
T Consensus 1 IlitRp~~~~~~~~~~l~~~G~~~~~~P~~~i~~~~~~~~~~~~~~l~~~d~iiftS~naV~~~~~~l~~~~~~~~~~~~ 80 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGLK 80 (239)
T ss_pred CEECCCHHHHHHHHHHHHHCCCCEEEECCEEEEECCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCHHCCCC
T ss_conf 98757757889999999988998999678788628838899998614578999996889999999999861730113686
Q ss_pred EECCCHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 0004158999976410122354-445456789998642201277753897215675620146898469825676887504
Q gi|255764510|r 73 IFAIGEASACLARQKGFTQIFH-GKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQ 151 (232)
Q Consensus 73 ~~~vg~~t~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~ 151 (232)
++|+|++|++++++.|+..... ..++++++.+++... ..++.+++++||..++++|.+.|+++|+.|+++.+|+++
T Consensus 81 ~~aVG~~Ta~~l~~~g~~~~~~~~~~~se~L~~~~~~~---~~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~ 157 (239)
T cd06578 81 IAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQ---DGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTV 157 (239)
T ss_pred EEECCHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEC
T ss_conf 88448899999997299855778889999999999873---468986999847877568999999789867899886651
Q ss_pred CCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHH----HCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 6899988999862-378389980789999999713544----05803997188999999976996699879999889999
Q gi|255764510|r 152 DIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPA----KISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLK 226 (232)
Q Consensus 152 ~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~----~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~ 226 (232)
+.+........+. ...|+|+|||+++++.|++++... ..+..++|||++||+++++.|++++++++.|+.++|++
T Consensus 158 ~~~~~~~~~~~i~~~~~~~i~ftS~~~~~~~~~~~~~~~~~~~~~~~~v~ig~~ta~~l~~~g~~~~~~a~~~~~~~li~ 237 (239)
T cd06578 158 PPDLDAELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRALLKNVKIAAIGPRTAEALRELGLKVVIVAESPTLEALLE 237 (239)
T ss_pred CCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHH
T ss_conf 78888899999974898899990999999999986664156750988999899999999976998169849989699996
Q ss_pred HH
Q ss_conf 98
Q gi|255764510|r 227 LL 228 (232)
Q Consensus 227 al 228 (232)
+|
T Consensus 238 ~i 239 (239)
T cd06578 238 AL 239 (239)
T ss_pred HC
T ss_conf 39
No 5
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=100.00 E-value=8.9e-39 Score=252.00 Aligned_cols=228 Identities=22% Similarity=0.234 Sum_probs=195.0
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHHHHHCC-------CCC
Q ss_conf 93898589688699999999879829994210000078-5200164475879998484679998862001-------363
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLPANFCR-------HTP 72 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~~~~~~-------~~~ 72 (232)
|+|+||||.+++.+++..|++.|++++++|+++++|.. .+..+..+..||||+|||+|||++++..... ..+
T Consensus 2 ~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~ 81 (248)
T COG1587 2 MRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKK 81 (248)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEECCEEEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 47999578303699999999629971887778877241166677415636889996889999999999873623212780
Q ss_pred EECCCHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 000415899997641012235444-5456789998642201277753897215675620146898469825676887504
Q gi|255764510|r 73 IFAIGEASACLARQKGFTQIFHGK-DNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQ 151 (232)
Q Consensus 73 ~~~vg~~t~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~ 151 (232)
++|+|++|++++++.|+.....+. +.++.+.+.+.+. ...++++++++|+.+++.|.+.|...|+.|.++++|+++
T Consensus 82 i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~---~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~ 158 (248)
T COG1587 82 IAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPEL---LKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTE 158 (248)
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf 99988999999998299877589887779999998742---567875999737777389999999769779999777530
Q ss_pred CCCCCHHHHHHH--HCCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 689998899986--237838998078999999971354405----80399718899999997699669987999988999
Q gi|255764510|r 152 DIAYPETTMKNL--LQNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLL 225 (232)
Q Consensus 152 ~~~~~~~~~~~~--~~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll 225 (232)
+........... .+++|+|+|||++++++|++.+..... ...++|||++|++.+++.|+++++.++.++.++|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l~~~G~~~~~~~~~~~~~~l~ 238 (248)
T COG1587 159 PPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGIEFLERKRVASIGPRTAETLKELGITVDIAAEKPTLEALA 238 (248)
T ss_pred CCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCHHHCCCEEEEECHHHHHHHHHHCCCCEECCCCCCHHHHH
T ss_conf 68755778988851178559998799999999986352220121285799988899999998299623325667778999
Q ss_pred HHHHHC
Q ss_conf 998614
Q gi|255764510|r 226 KLLPLR 231 (232)
Q Consensus 226 ~al~~~ 231 (232)
++|.+.
T Consensus 239 ~al~~~ 244 (248)
T COG1587 239 DALAKL 244 (248)
T ss_pred HHHHHH
T ss_conf 999987
No 6
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=1.6e-36 Score=238.52 Aligned_cols=224 Identities=12% Similarity=0.082 Sum_probs=189.6
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHHC----CCCCEE
Q ss_conf 3898589688699999999879829994210000078520---016447587999848467999886200----136300
Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANFC----RHTPIF 74 (232)
Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~~----~~~~~~ 74 (232)
+||||||.+++..++..|++.|+.++.+|+++|++++... .+.+..++|++||.|+|||++.+.... .+.+++
T Consensus 18 tvLvTRP~~q~~~L~~~L~~aG~~~i~lP~l~I~~~~~~~~~~~l~~~~~~d~vIFVS~nAV~~a~~~l~~~~p~~~~~~ 97 (264)
T PRK08811 18 TLISLRPSGEHAALRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVQAAHRLLPLQRPARAHWL 97 (264)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 89995855567999999998799778467000467996047999986423999999858999999975421278898599
Q ss_pred CCCHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 041589999764101223544-4545678999864220127775389721567562014689846982567688750468
Q gi|255764510|r 75 AIGEASACLARQKGFTQIFHG-KDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDI 153 (232)
Q Consensus 75 ~vg~~t~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~ 153 (232)
+||.+|++++.+.|...+..+ ..+++.+..+ ......+++|++++|+++|+.|.+.|+++|..|+++.+|++++.
T Consensus 98 aVG~~TA~~L~~~g~~~v~~P~~~dSE~LLaL----p~~~~~~~~vlI~rG~GGRe~La~~L~~rGA~V~~~~~Y~R~~p 173 (264)
T PRK08811 98 SVGEGTARALQACGIDRVVRPTRMDSEGLLAL----PLAQAPLQAVGLITAPGGRGLLAPTLEQRGARIVRADVYQRVPL 173 (264)
T ss_pred EECHHHHHHHHHCCCCCEECCCCCCHHHHHHC----HHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf 99899999999759985308999880888728----21058898799984786789999999977985889988761499
Q ss_pred CCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH----CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 99988999862--3783899807899999997135440----58039971889999999769966998799998899999
Q gi|255764510|r 154 AYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPAK----ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKL 227 (232)
Q Consensus 154 ~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~----~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~a 227 (232)
+.....+.... ..+|.++++|+.++++|++++.... ....+++.|+|+|+.++++||+++++++.|++++|+.|
T Consensus 174 ~~~~~~l~~~~~~~~~~~i~vTSgE~L~~L~~~l~~~~~~~L~~~~lvVpS~RIa~~A~~lGf~~V~~A~~a~d~allaA 253 (264)
T PRK08811 174 RLRASTLQALSHAAPRSVLALSSAEALTLVLQQLPPALRRALQQRPVVASSDRLLDAAHAAGFIHVMRAEGPLPAQLAAA 253 (264)
T ss_pred CCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCHHHHHHHHCCCEEECCHHHHHHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf 99979999999747999999881999999999728878999854988966889999999769972887899985999999
Q ss_pred HH
Q ss_conf 86
Q gi|255764510|r 228 LP 229 (232)
Q Consensus 228 l~ 229 (232)
+.
T Consensus 254 ~~ 255 (264)
T PRK08811 254 AA 255 (264)
T ss_pred HH
T ss_conf 99
No 7
>pfam02602 HEM4 Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyses the reaction: Hydroxymethylbilane <= uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.
Probab=100.00 E-value=9.4e-37 Score=239.84 Aligned_cols=209 Identities=21% Similarity=0.228 Sum_probs=175.0
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHH---------CCCCCEECCCHHHH
Q ss_conf 9999999879829994210000078520---01644758799984846799988620---------01363000415899
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANF---------CRHTPIFAIGEASA 81 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~---------~~~~~~~~vg~~t~ 81 (232)
+++..|+++|++++++|+++++|.+.+. .+..+.+||||||||+|||++|+... ....+++|+|++|+
T Consensus 2 ~~~~~l~~~G~~vi~~P~l~~~~~~~~~l~~~l~~l~~~d~iiftS~~aV~~~~~~~~~~~~~~~~~~~~~~~avG~~Ta 81 (229)
T pfam02602 2 ELAALLEELGAEPVELPLIEIEPEDRDELDEALEDLGEYDWLIFTSANGVRAFFEALKEAGADLRALANLKIAAVGPKTA 81 (229)
T ss_pred HHHHHHHHCCCEEEEECCEEEECCCCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHH
T ss_conf 78999997799199977788762881899999861657788999488999999999986065423545664998378999
Q ss_pred HHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHH
Q ss_conf 99764101223544--4545678999864220127775389721567562014689846982567688750468999889
Q gi|255764510|r 82 CLARQKGFTQIFHG--KDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETT 159 (232)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~ 159 (232)
+++++.|+.....+ .++++++.+++.+. ..++++++++|+.++++|.+.|++.|+.|+++++|++++.......
T Consensus 82 ~~l~~~G~~~~~~~~~~~~~~~L~~~i~~~----~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~ 157 (229)
T pfam02602 82 RALREAGLTPDFVPSAEGTAEGLAEELAEL----LAGKRVLLLRGNLGRDDLAEALREAGAKVDEVVVYRTVPPAELPEE 157 (229)
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHHC----CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCHHH
T ss_conf 999984999608798888999999977642----6898699972777736789999977986789988886369877699
Q ss_pred HHHHH--CCCCEEEEECHHHHHHHHHHCCHHH---CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 99862--3783899807899999997135440---5803997188999999976996699879999889999
Q gi|255764510|r 160 MKNLL--QNADAILFYARSSVLYFFSLPLPAK---ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLK 226 (232)
Q Consensus 160 ~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~---~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~ 226 (232)
+...+ +.+|+|+|||++++++|++++.... .+..++|||++||+++++.||+++++|++|+.++|++
T Consensus 158 ~~~~~~~~~~d~i~ftS~~~v~~f~~~~~~~~~~~~~~~v~aiG~~ta~~l~~~G~~~~~va~~p~~~~lv~ 229 (229)
T pfam02602 158 LRELLRAGEIDAVVFTSPSTVRSFLELLPDEGELLKGVKVAAIGPTTAEALRELGLRVDVVAEEPTAEALLE 229 (229)
T ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHCCC
T ss_conf 999998289989998799999999998777555540888999899999999986998169979998443009
No 8
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=7.3e-35 Score=228.49 Aligned_cols=227 Identities=16% Similarity=0.161 Sum_probs=179.9
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC----CCCCCCCCCEEEEECHHHHHHHHHHHCC----CCC
Q ss_conf 93898589688699999999879829994210000078520----0164475879998484679998862001----363
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV----FLAMQQSYGAIAITSSESLSTLPANFCR----HTP 72 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~----~~~~~~~~d~iiftS~~av~~~~~~~~~----~~~ 72 (232)
|.||||||.+++..++..|+..|+.++++|+|+|+|.++.. .+..+++||++||.|+|||++++..... ..+
T Consensus 4 ~tVLVTRP~~q~~~L~~~L~~~G~~a~~~Pli~I~p~~d~~~l~~~l~~L~~~d~vIfVS~NAV~~al~~~~~~wP~~l~ 83 (653)
T PRK06975 4 FTVVVTRPDGQSAALAAQLAAAGLDVLEFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLGAIWPHALP 83 (653)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCC
T ss_conf 17998386677999999999769975666746850088726689998557779989998989999999985230888892
Q ss_pred EECCCHHHHHHHHHHCCCC----CCCCC---------CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCC
Q ss_conf 0004158999976410122----35444---------5456789998642201277753897215675620146898469
Q gi|255764510|r 73 IFAIGEASACLARQKGFTQ----IFHGK---------DNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHK 139 (232)
Q Consensus 73 ~~~vg~~t~~~~~~~~~~~----~~~~~---------~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g 139 (232)
+++||.+|+.++...|... +..+. .+++.+..+.. .......+++|++++|+++|+.|.+.|+++|
T Consensus 84 ~~aVG~~Ta~aL~~~Gi~~~~~~vi~P~~~~~~~~~~~dSE~LLalpe-~~lq~v~gkrVLIvRG~GGRElLaetL~~RG 162 (653)
T PRK06975 84 IAVVGPGSVAALARHGIAAPAHRVIAPQAPADGGEPRYDSEALFAEID-AGAAALAGKRVLIVRGDGGREWLAERLREAG 162 (653)
T ss_pred EEEECHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHCCH-HHHHHCCCCEEEEEECCCCHHHHHHHHHHCC
T ss_conf 899889999999972987667720278876666666788899996647-4676534997999827853799999999879
Q ss_pred CEEEEEEEEEECCCCCCHHHH---HHHH-CCCCEEEEECHHHHHHHHHHCCH--------HHCCEEEEECCHHHHHHHHH
Q ss_conf 825676887504689998899---9862-37838998078999999971354--------40580399718899999997
Q gi|255764510|r 140 IPLRVIDCYYSQDIAYPETTM---KNLL-QNADAILFYARSSVLYFFSLPLP--------AKISAAFLCLSNNIASAIPA 207 (232)
Q Consensus 140 ~~v~~~~vY~~~~~~~~~~~~---~~~~-~~~d~i~f~S~~~v~~~~~~~~~--------~~~~~~~~~ig~~tA~~~~~ 207 (232)
..|++++||+++.++.....+ ..++ ++++.++.||+.++++++++... +.....+++.|+|+++.+++
T Consensus 163 A~V~y~e~YrR~~P~p~~~~w~~~~~~~~~~~~~~~~tS~e~v~~l~~la~~~l~~~~~~~L~~~~~~~~~~Ria~~a~~ 242 (653)
T PRK06975 163 AEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSSEAVRNLDELARAHLNPAEIDALKHAPLVAPHPRIAEQARA 242 (653)
T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 80569978630398998037888998852687179966689999999886501898788999719820467899999997
Q ss_pred CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 6996699879999889999986
Q gi|255764510|r 208 SYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 208 ~g~~~~~va~~p~~~~ll~al~ 229 (232)
+||.++.++ .+..++++.++.
T Consensus 243 lg~~~i~~~-~agd~~~~~a~~ 263 (653)
T PRK06975 243 LGFDRITLT-GAGDERIVRAFL 263 (653)
T ss_pred HCCCCEEEC-CCCCHHHHHHHH
T ss_conf 280117625-766389999999
No 9
>KOG4132 consensus
Probab=99.97 E-value=6.5e-29 Score=192.81 Aligned_cols=227 Identities=19% Similarity=0.219 Sum_probs=189.9
Q ss_pred EEEECC-HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHHC----------
Q ss_conf 898589-688699999999879829994210000078520---016447587999848467999886200----------
Q gi|255764510|r 3 IVITRP-IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANFC---------- 68 (232)
Q Consensus 3 ilitRp-~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~~---------- 68 (232)
+++... ....+.....|+++|++++..|++.+.....+. .+....+|-.||||||+.|+++.+.+.
T Consensus 6 vlllK~~s~~~D~Y~~~l~~~~~epifIP~l~f~f~~l~~lr~kL~~p~kY~giIfTSpR~VEa~~eaL~q~~tel~~~w 85 (260)
T KOG4132 6 VLLLKNKSVPIDPYEEELRSYGLEPIFIPVLSFTFVNLQQLRAKLNNPPKYAGIIFTSPRCVEALNEALIQTETELKAAW 85 (260)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEECCEEEEECCHHHHHHHHCCCHHHCEEEEECHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 78741888888779999986599854532210023248999988549343140688275889999998622443015677
Q ss_pred CCCCEECCCHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE
Q ss_conf 136300041589999764101223-5444545678999864220127775389721567562014689846982567688
Q gi|255764510|r 69 RHTPIFAIGEASACLARQKGFTQI-FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC 147 (232)
Q Consensus 69 ~~~~~~~vg~~t~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v 147 (232)
....+|++|+.|..++...++-.. ....++++.+++++..+ ....+..+++++||+..++.|+..|...|+.|+.++|
T Consensus 86 ~a~~vYtVG~aT~~si~~~~~l~T~Ge~~gNa~~LaD~Ive~-~~~~~alPLLfpcGn~~rdil~kkL~~~G~~Vds~~V 164 (260)
T KOG4132 86 LAKHVYTVGPATHASIRRLGFLNTHGEDAGNAEILADLIVET-FTDKRALPLLFPCGNLRRDILPKKLHDKGIRVDSCEV 164 (260)
T ss_pred HHCCEEEECCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 535345655610889987257645440135588776765433-7874457357773650367889988737703557899
Q ss_pred EEECCCCCCHHHHHHHHC---CCCEEEEECHHHHHHHHHHCCHHHC---CEEEEECCHHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 750468999889998623---7838998078999999971354405---8039971889999999769966998799998
Q gi|255764510|r 148 YYSQDIAYPETTMKNLLQ---NADAILFYARSSVLYFFSLPLPAKI---SAAFLCLSNNIASAIPASYKNVVTVACFPKE 221 (232)
Q Consensus 148 Y~~~~~~~~~~~~~~~~~---~~d~i~f~S~~~v~~~~~~~~~~~~---~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~ 221 (232)
|+++.+++....++.+++ .+|+|+||||+++...++.+..... +.++++|||+|.+++++.|.++..|++.||.
T Consensus 165 Y~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~~~vs~~P~p 244 (260)
T KOG4132 165 YETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKVDVVSPAPDP 244 (260)
T ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHCCCCCCEECCCCCH
T ss_conf 86355663788999999856974259998760178899999873345002057775762688999759976312589997
Q ss_pred HHHHHHHHH
Q ss_conf 899999861
Q gi|255764510|r 222 TSLLKLLPL 230 (232)
Q Consensus 222 ~~ll~al~~ 230 (232)
++|+.+|..
T Consensus 245 e~L~~~I~~ 253 (260)
T KOG4132 245 ESLADAIEL 253 (260)
T ss_pred HHHHHHHHH
T ss_conf 999999972
No 10
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=99.89 E-value=3.7e-21 Score=146.27 Aligned_cols=224 Identities=11% Similarity=0.035 Sum_probs=179.8
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCC------CCCCCCCEEEEECHHHHHHHHHHH--------
Q ss_conf 389858968869999999987982999421000007852001------644758799984846799988620--------
Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFL------AMQQSYGAIAITSSESLSTLPANF-------- 67 (232)
Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~------~~~~~~d~iiftS~~av~~~~~~~-------- 67 (232)
+|.||- ..++++++..|++.|+++++.|.+++.|+.++..+ ...+..|++|||...|.+.+.+..
T Consensus 13 tV~VTa-~RRaeEl~aLLeRrGA~v~~aPalriVPl~DD~eL~~~t~~lia~ppD~vV~TTGiGfr~wleaAe~~Gl~d~ 91 (381)
T PRK07239 13 TVGVTS-ARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATEALIAAPPDIVVATTGIGFRGWVEAADGWGLADE 91 (381)
T ss_pred EEEEEC-CCCHHHHHHHHHHCCCEEEECCCCCEECCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCHHH
T ss_conf 898725-4329999999997699589546533033888599999999985489998999236889999999997177789
Q ss_pred ----CCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCCHHHHHHHC
Q ss_conf ----0136300041589999764101223544454567899986422012777538972156-----7562014689846
Q gi|255764510|r 68 ----CRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK-----PRNFHFEDYLIEH 138 (232)
Q Consensus 68 ----~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~-----~~~~~l~~~L~~~ 138 (232)
..+..+++-|+++..++++.|......+ .++...+++..+......+++|.+.-.. +..+.|.+.|+..
T Consensus 92 Ll~aL~~ari~aRGPKa~gAlRaaGL~e~wsp--~ses~~Evl~~Ll~~gv~G~rIAVQlHGa~~~~eP~p~~~~~Lr~a 169 (381)
T PRK07239 92 LLEALSSARLVARGPKATGALRAAGLREEWSP--ASESSAEVLEYLLEEGVAGKRIAVQLHGAADEWDPLPEFLEALRAA 169 (381)
T ss_pred HHHHHHCCEEEEECCCHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHC
T ss_conf 99997328078777646878986499864279--9987799999997179888889998147666668788999999977
Q ss_pred CCEEEEEEEEEECCCCCCHHHHH--H-HH-CCCCEEEEECHHHHHHHHHHCCHHH----------CCEEEEECCHHHHHH
Q ss_conf 98256768875046899988999--8-62-3783899807899999997135440----------580399718899999
Q gi|255764510|r 139 KIPLRVIDCYYSQDIAYPETTMK--N-LL-QNADAILFYARSSVLYFFSLPLPAK----------ISAAFLCLSNNIASA 204 (232)
Q Consensus 139 g~~v~~~~vY~~~~~~~~~~~~~--~-~~-~~~d~i~f~S~~~v~~~~~~~~~~~----------~~~~~~~ig~~tA~~ 204 (232)
|..|..+++|++.+.++....-+ . .. .++|+|+|||+.++.+|++...+.+ ..+...|+||.||..
T Consensus 170 GAeV~~V~vYRW~~p~d~~~l~~Lv~~i~~g~vDAVtFTSAPaa~all~~A~~~G~~~~ll~Alr~~V~aacVGpVTA~p 249 (381)
T PRK07239 170 GAEVVPVPVYRWVPPPDGGPFDRLVDLIATRQLDAVTFTSAPAVAALLERAREMGLLDELLAALRTDVLAACVGPVTAAP 249 (381)
T ss_pred CCEEEEECCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCHHH
T ss_conf 98688956543269998547999999997088888996578999999999987484899999972890699876602244
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 9976996699879999889999986
Q gi|255764510|r 205 IPASYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 205 ~~~~g~~~~~va~~p~~~~ll~al~ 229 (232)
+...|.. .+.++..-.-+|+..|.
T Consensus 250 L~~~Gvp-~~~PeR~RlGaLvr~~~ 273 (381)
T PRK07239 250 LVRAGVP-TSAPERMRLGALVRHIT 273 (381)
T ss_pred HHHCCCC-CCCCCCCCCHHHHHHHH
T ss_conf 8875999-75876546178999999
No 11
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.86 E-value=1.8e-20 Score=142.20 Aligned_cols=191 Identities=14% Similarity=0.051 Sum_probs=137.9
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHHHHHHHHHCC--------CCC
Q ss_conf 389858968869999999987982999421000007852-00164475879998484679998862001--------363
Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESLSTLPANFCR--------HTP 72 (232)
Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av~~~~~~~~~--------~~~ 72 (232)
||||||+.+|+..+..+|+++|++++.+|+|++++.... .....+.+||||||||+|||++|+..+.. ..+
T Consensus 253 rVLVtRtreQA~~ls~~L~~~GA~v~E~PtI~~~~~~~~~~~i~~l~~ydwlvFTS~NgV~~Ff~~L~~~g~D~R~L~~k 332 (474)
T PRK07168 253 KVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLTLEQINEIFNVDRLVFCSAESVEILMQSCSKYKKDIRSLQAE 332 (474)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCHHHCCCE
T ss_conf 79977866776999999997699389944531688563799987533389899938789999999999739845760761
Q ss_pred EECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 00041589999764101223544454567899986422012777538972156756201468984698256768875046
Q gi|255764510|r 73 IFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQD 152 (232)
Q Consensus 73 ~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~ 152 (232)
+.++|++|+++++++|.-..-.. ..++..+++ |. +-+....+..+......+..|...-
T Consensus 333 iaaiG~aT~~~L~~~Gll~~~~~------------------~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~t~~~~~ 391 (474)
T PRK07168 333 LQHMNVATQEKLMQYGLLSKEAK------------------FSSDTTVYL-GR--NINRIAFIQEKIGAGSYMMTHKYTI 391 (474)
T ss_pred EEEECHHHHHHHHHCCCCCCCCC------------------CCCCEEEEC-CC--CHHHHHHHHHCCCCCCEEEECCEEE
T ss_conf 78875899999997697344220------------------368658980-45--5116788870578753032100000
Q ss_pred CCCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-C---CEEEEECCHHHHHHHHHCCCCEE
Q ss_conf 899988999862--3783899807899999997135440-5---80399718899999997699669
Q gi|255764510|r 153 IAYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-I---SAAFLCLSNNIASAIPASYKNVV 213 (232)
Q Consensus 153 ~~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-~---~~~~~~ig~~tA~~~~~~g~~~~ 213 (232)
.....+.....+ ..+|.|+|.|.++++.|..-+...+ . ...+.-|+..|-..+-+.|+.++
T Consensus 392 ~~~~~~~~~r~~~~~~~~~v~f~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T PRK07168 392 DHRFDEVHSRMLSEFLWDSIVFEGRASIDTFLAEVKRLGFIDIVTLPFSYTDVPTLHYANKVGFHNI 458 (474)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCHHCCCHHHHHHHHCCCCCH
T ss_conf 1236777763234354038996580069999999875151212227730037288888876075401
No 12
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=99.35 E-value=1.7e-11 Score=88.25 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=97.2
Q ss_pred CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHH--HHHHHCCCCEEEEECHHHHHHHHHHCCHHHC---
Q ss_conf 75389721567562014689846982567688750468999889--9986237838998078999999971354405---
Q gi|255764510|r 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETT--MKNLLQNADAILFYARSSVLYFFSLPLPAKI--- 190 (232)
Q Consensus 116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~--~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~--- 190 (232)
+++|++-|.......+.+.|++.|+.+..+++-+.++....... ....+...|+|+|||+.+|+.|++.+.....
T Consensus 1 g~~IlvTRp~~~~~~l~~~L~~~G~~~~~~Pli~i~p~~~~~~~~~~~~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~ 80 (252)
T PRK05928 1 GMKILLTRPSPAGEELVELLRKLGFVALHLPLIEFEPGRSLPQLADALAFLGEADAVIFTSKNAVEFLLSALKKKGLKWP 80 (252)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCC
T ss_conf 99899869778899999999988996999678888888873779999851568788999888999999999985298753
Q ss_pred -CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf -8039971889999999769966998799998899999861
Q gi|255764510|r 191 -SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 191 -~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
+.+++|+|+.||+++++.|++++.+++..+.++|++.|..
T Consensus 81 ~~~~i~aVG~~Ta~~L~~~G~~~~~~p~~~~~~~l~~~l~~ 121 (252)
T PRK05928 81 LLAKYAAIGEKTALALKKLGGKPVFVPEDGEGSELLLELPE 121 (252)
T ss_pred CCCEEEEECHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHH
T ss_conf 48849999899999999719986052999867999999874
No 13
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=99.22 E-value=1.7e-10 Score=82.30 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=96.1
Q ss_pred CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC----C
Q ss_conf 753897215675620146898469825676887504689998899986237838998078999999971354405----8
Q gi|255764510|r 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKI----S 191 (232)
Q Consensus 116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~----~ 191 (232)
+.+|++.+.......+.+.|++.|+.+..++.-+..+.......+. .+...|+|+|||+.+|+.|++.....+. +
T Consensus 1 ~~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~-~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~ 79 (248)
T COG1587 1 GMRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALE-DLDSADWVVFTSPNAVRFFFEALKEQGLDALKN 79 (248)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEECCEEEECCHHHHHHHH-CCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9479995783036999999996299718877788772411666774-156368899968899999999998736232127
Q ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 039971889999999769966998799998899999861
Q gi|255764510|r 192 AAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 192 ~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
.+++|+|+.||+++++.|++++.+++..+.+++++++..
T Consensus 80 ~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~ 118 (248)
T COG1587 80 KKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPE 118 (248)
T ss_pred CEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 809998899999999829987758988777999999874
No 14
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.21 E-value=1.4e-10 Score=82.71 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=91.2
Q ss_pred EEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHHCCCCEEEEECHHHHHHHHHHCCHH----HCCEE
Q ss_conf 897215675620146898469825676887504689998-8999862378389980789999999713544----05803
Q gi|255764510|r 119 LIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLLQNADAILFYARSSVLYFFSLPLPA----KISAA 193 (232)
Q Consensus 119 vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~----~~~~~ 193 (232)
|++.+.....+.+.+.|++.|+.+..+++-+.++.+... ......+.+.|+|+|+|+.+|+.|++.+... ..+.+
T Consensus 1 IlitRp~~~~~~~~~~l~~~G~~~~~~P~~~i~~~~~~~~~~~~~~l~~~d~iiftS~naV~~~~~~l~~~~~~~~~~~~ 80 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGLK 80 (239)
T ss_pred CEECCCHHHHHHHHHHHHHCCCCEEEECCEEEEECCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCHHCCCC
T ss_conf 98757757889999999988998999678788628838899998614578999996889999999999861730113686
Q ss_pred EEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 9971889999999769966998799998899999861
Q gi|255764510|r 194 FLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 194 ~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
++|+|+.|++++++.|++++.+++..+.++|++.+.+
T Consensus 81 ~~aVG~~Ta~~l~~~g~~~~~~~~~~~se~L~~~~~~ 117 (239)
T cd06578 81 IAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLEL 117 (239)
T ss_pred EEECCHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHH
T ss_conf 8844889999999729985577888999999999987
No 15
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=99.11 E-value=1e-09 Score=77.61 Aligned_cols=113 Identities=11% Similarity=-0.014 Sum_probs=94.5
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHH--HHCCCCEEEEECHHHHHHHHHHCCHHHC--
Q ss_conf 775389721567562014689846982567688750468999889998--6237838998078999999971354405--
Q gi|255764510|r 115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKN--LLQNADAILFYARSSVLYFFSLPLPAKI-- 190 (232)
Q Consensus 115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~--~~~~~d~i~f~S~~~v~~~~~~~~~~~~-- 190 (232)
.+.+|++-|-....+.|.+.|+..|+.+..+++-+..|.++....... .+...|+|+|+|+.+|+.+++.+.....
T Consensus 2 ~G~rVLVTRP~~qa~~L~~~L~~~G~~~~~~Pli~I~p~~~~~~~~~~l~~l~~~d~vifvS~nAv~~~~~~l~~~~~~~ 81 (255)
T PRK05752 2 SGWRLLLTRPAEDCAALAASLAEAGIHSSSLPLLAIEPLPLTPEQRALLLELDRYCAVIVVSKPAARLGLELLDEYWPQP 81 (255)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCC
T ss_conf 98789980977889999999997799789728889842899778999986288868899987799999999998628895
Q ss_pred -CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf -8039971889999999769966998799998899999
Q gi|255764510|r 191 -SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKL 227 (232)
Q Consensus 191 -~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~a 227 (232)
...++++|+.||+++++.|++....+..++-|+|++.
T Consensus 82 ~~~~~~AVG~~TA~aL~~~G~~v~~p~~~~~SE~LL~l 119 (255)
T PRK05752 82 PQQPWFSVGAATAAILQDYGLDVSYPEQGDDSEALLAL 119 (255)
T ss_pred CCCEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHC
T ss_conf 33828998899999999769982448987776788605
No 16
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=99.10 E-value=7.5e-10 Score=78.39 Aligned_cols=110 Identities=9% Similarity=0.032 Sum_probs=89.3
Q ss_pred EEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEEEC
Q ss_conf 38972156756201468984698256768875046899988999862378389980789999999713544058039971
Q gi|255764510|r 118 PLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFLCL 197 (232)
Q Consensus 118 ~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~i 197 (232)
+|++-|-......+.+.|++.|+.+...++.+.++..... ...+...|+|+|||..+|+.|.........+..++|+
T Consensus 2 rILvTRP~~~a~~l~~~L~~~G~~~~~~Pll~i~~~~~~~---~~~l~~~~~lifTS~NaVr~l~~~~~~~~~~~p~~aV 78 (237)
T PRK09189 2 RVLVTRPEPSAERTAARLRAMGHEPVLLPLSRTVHLSFAA---PDAAEPFGAIAVTSANAVRHLSPERLLPHLALPLFAV 78 (237)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEECCCCCEECCCCHH---CCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 3999386777999999999779989987861055487100---1125666789997189999875874242659839998
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf 8899999997699669987999988999998614
Q gi|255764510|r 198 SNNIASAIPASYKNVVTVACFPKETSLLKLLPLR 231 (232)
Q Consensus 198 g~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~ 231 (232)
|+.||+++++.|++++ ++...+.++|++.+...
T Consensus 79 G~~TA~~l~~~G~~~v-~~~~g~ae~L~~li~~~ 111 (237)
T PRK09189 79 GEGTAEAAQEAGFTSV-IEGGGDAVRLAETVAAA 111 (237)
T ss_pred CHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHH
T ss_conf 5999999997299551-35877899999999973
No 17
>pfam02602 HEM4 Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyses the reaction: Hydroxymethylbilane <= uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.01 E-value=6.5e-09 Score=72.79 Aligned_cols=99 Identities=14% Similarity=0.039 Sum_probs=79.0
Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH---HCCCCEEEEECHHHHHHHHHHCCHHH------CCEEEEECCHH
Q ss_conf 0146898469825676887504689998899986---23783899807899999997135440------58039971889
Q gi|255764510|r 130 HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL---LQNADAILFYARSSVLYFFSLPLPAK------ISAAFLCLSNN 200 (232)
Q Consensus 130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~---~~~~d~i~f~S~~~v~~~~~~~~~~~------~~~~~~~ig~~ 200 (232)
.+.+.|+++|+.+..+++=+.++.... .+... +.+.|+|+|||+.+|+.|++...... .+.+++|+|+.
T Consensus 2 ~~~~~l~~~G~~vi~~P~l~~~~~~~~--~l~~~l~~l~~~d~iiftS~~aV~~~~~~~~~~~~~~~~~~~~~~~avG~~ 79 (229)
T pfam02602 2 ELAALLEELGAEPVELPLIEIEPEDRD--ELDEALEDLGEYDWLIFTSANGVRAFFEALKEAGADLRALANLKIAAVGPK 79 (229)
T ss_pred HHHHHHHHCCCEEEEECCEEEECCCCH--HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHH
T ss_conf 789999977991999777887628818--999998616577889994889999999999860654235456649983789
Q ss_pred HHHHHHHCCCCEEEECC-CCCHHHHHHHHHH
Q ss_conf 99999976996699879-9998899999861
Q gi|255764510|r 201 IASAIPASYKNVVTVAC-FPKETSLLKLLPL 230 (232)
Q Consensus 201 tA~~~~~~g~~~~~va~-~p~~~~ll~al~~ 230 (232)
|++++++.|++++.+++ ..+.++|++.|..
T Consensus 80 Ta~~l~~~G~~~~~~~~~~~~~~~L~~~i~~ 110 (229)
T pfam02602 80 TARALREAGLTPDFVPSAEGTAEGLAEELAE 110 (229)
T ss_pred HHHHHHHCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 9999998499960879888899999997764
No 18
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=98.90 E-value=8.8e-09 Score=71.97 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC--
Q ss_conf 777538972156756201468984698256768875046899988999862378389980789999999713544058--
Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS-- 191 (232)
Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~-- 191 (232)
.-+.+|+++|..+....+.+.|+..|..+.+++.-+..+.....+.+. .+...||++|||+.+|+.|++.+...+.+
T Consensus 249 LfG~rVLVtRtreQA~~ls~~L~~~GA~v~E~PtI~~~~~~~~~~~i~-~l~~ydwlvFTS~NgV~~Ff~~L~~~g~D~R 327 (474)
T PRK07168 249 LHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLTLEQIN-EIFNVDRLVFCSAESVEILMQSCSKYKKDIR 327 (474)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH-HHCCCCEEEEECHHHHHHHHHHHHHCCCCHH
T ss_conf 788679977866776999999997699389944531688563799987-5333898999387899999999997398457
Q ss_pred ---EEEEECCHHHHHHHHHCCCCE
Q ss_conf ---039971889999999769966
Q gi|255764510|r 192 ---AAFLCLSNNIASAIPASYKNV 212 (232)
Q Consensus 192 ---~~~~~ig~~tA~~~~~~g~~~ 212 (232)
.++.+||+.|++++++.|+=.
T Consensus 328 ~L~~kiaaiG~aT~~~L~~~Gll~ 351 (474)
T PRK07168 328 SLQAELQHMNVATQEKLMQYGLLS 351 (474)
T ss_pred HCCCEEEEECHHHHHHHHHCCCCC
T ss_conf 607617887589999999769734
No 19
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=98.70 E-value=2.4e-07 Score=63.37 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=88.2
Q ss_pred CEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHH-HHHHHCCCCEEEEECHHHHHHHHHHCC-HHHCCEEE
Q ss_conf 5389721567562014689846982567688750468999889-998623783899807899999997135-44058039
Q gi|255764510|r 117 KPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETT-MKNLLQNADAILFYARSSVLYFFSLPL-PAKISAAF 194 (232)
Q Consensus 117 ~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~-~~~~~~~~d~i~f~S~~~v~~~~~~~~-~~~~~~~~ 194 (232)
=+|++-|=.+....|.+.|...|+.+..++.-+-.+.+..... ........|+|+|.|+.+|+....... ....+..+
T Consensus 17 wtvLvTRP~~q~~~L~~~L~~aG~~~i~lP~l~I~~~~~~~~~~~l~~~~~~d~vIFVS~nAV~~a~~~l~~~~p~~~~~ 96 (264)
T PRK08811 17 WTLISLRPSGEHAALRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVQAAHRLLPLQRPARAHW 96 (264)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCEE
T ss_conf 38999585556799999999879977846700046799604799998642399999985899999997542127889859
Q ss_pred EECCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 971889999999769966998799998899999
Q gi|255764510|r 195 LCLSNNIASAIPASYKNVVTVACFPKETSLLKL 227 (232)
Q Consensus 195 ~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~a 227 (232)
+++|+.||.++++.|...+.+++..|.|+|++.
T Consensus 97 ~aVG~~TA~~L~~~g~~~v~~P~~~dSE~LLaL 129 (264)
T PRK08811 97 LSVGEGTARALQACGIDRVVRPTRMDSEGLLAL 129 (264)
T ss_pred EEECHHHHHHHHHCCCCCEECCCCCCHHHHHHC
T ss_conf 999899999999759985308999880888728
No 20
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=98.50 E-value=1.9e-06 Score=58.03 Aligned_cols=112 Identities=7% Similarity=-0.037 Sum_probs=79.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHH--HHCCCCEEEEECHHHHHHHHHHCCH-HHCCEE
Q ss_conf 5389721567562014689846982567688750468999889998--6237838998078999999971354-405803
Q gi|255764510|r 117 KPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKN--LLQNADAILFYARSSVLYFFSLPLP-AKISAA 193 (232)
Q Consensus 117 ~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~--~~~~~d~i~f~S~~~v~~~~~~~~~-~~~~~~ 193 (232)
-.|++-|=.+....|.+.|+..|+.+..+++-+..|..+....... .+...|+|+|.|+.+|+..+..+.. +..+..
T Consensus 4 ~tVLVTRP~~q~~~L~~~L~~~G~~a~~~Pli~I~p~~d~~~l~~~l~~L~~~d~vIfVS~NAV~~al~~~~~~wP~~l~ 83 (653)
T PRK06975 4 FTVVVTRPDGQSAALAAQLAAAGLDVLEFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLGAIWPHALP 83 (653)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCC
T ss_conf 17998386677999999999769975666746850088726689998557779989998989999999985230888892
Q ss_pred EEECCHHHHHHHHHCCCCE----EEECCC--------CCHHHHHHHH
Q ss_conf 9971889999999769966----998799--------9988999998
Q gi|255764510|r 194 FLCLSNNIASAIPASYKNV----VTVACF--------PKETSLLKLL 228 (232)
Q Consensus 194 ~~~ig~~tA~~~~~~g~~~----~~va~~--------p~~~~ll~al 228 (232)
++++|+.||.++.+.|+.. +++++. .|-|+|++..
T Consensus 84 ~~aVG~~Ta~aL~~~Gi~~~~~~vi~P~~~~~~~~~~~dSE~LLalp 130 (653)
T PRK06975 84 IAVVGPGSVAALARHGIAAPAHRVIAPQAPADGGEPRYDSEALFAEI 130 (653)
T ss_pred EEEECHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHCC
T ss_conf 89988999999997298766772027887666666678889999664
No 21
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=98.19 E-value=2.6e-05 Score=51.13 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=70.9
Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCC------CCCCCCCCCEEEEECHHHHHHHHHHHC-------------CCCC
Q ss_conf 699999999879829994210000078520------016447587999848467999886200-------------1363
Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESV------FLAMQQSYGAIAITSSESLSTLPANFC-------------RHTP 72 (232)
Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~------~~~~~~~~d~iiftS~~av~~~~~~~~-------------~~~~ 72 (232)
...|.+.|+..|.+++..|..+-.+-++.. ......++|++.|||.-++..+..... ...-
T Consensus 159 ~p~~~~~Lr~aGAeV~~V~vYRW~~p~d~~~l~~Lv~~i~~g~vDAVtFTSAPaa~all~~A~~~G~~~~ll~Alr~~V~ 238 (381)
T PRK07239 159 LPEFLEALRAAGAEVVPVPVYRWVPPPDGGPFDRLVDLIATRQLDAVTFTSAPAVAALLERAREMGLLDELLAALRTDVL 238 (381)
T ss_pred CHHHHHHHHHCCCEEEEECCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCEE
T ss_conf 88999999977986889565432699985479999999970888889965789999999999874848999999728906
Q ss_pred EECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0004158999976410122354445456789998642
Q gi|255764510|r 73 IFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQ 109 (232)
Q Consensus 73 ~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 109 (232)
..|+|+-|+.-+...|.....+..+--..+...+.++
T Consensus 239 aacVGpVTA~pL~~~Gvp~~~PeR~RlGaLvr~~~~~ 275 (381)
T PRK07239 239 AACVGPVTAAPLVRAGVPTSAPERMRLGALVRHITEE 275 (381)
T ss_pred EEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9987660224488759997587654617899999998
No 22
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.89 E-value=0.016 Score=34.50 Aligned_cols=171 Identities=12% Similarity=0.075 Sum_probs=94.8
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEE-ECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCH
Q ss_conf 9389858968869999999987982999-42100000785200164475879998484679-998862001363000415
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVM-MPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGE 78 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~-~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~ 78 (232)
||||++.+.++ .-.+.|++.|+..+. .|- .++.+.-...+.++|++++-|..-+ +.+.....+-.-+.+.|-
T Consensus 11 mkiL~~d~i~~--~~~~~L~~~G~~~v~~~~~----~l~~eeL~~~i~~~d~liiRS~t~vt~~vi~~a~~Lk~I~r~Gv 84 (409)
T PRK11790 11 IKFLLLEGIHQ--SAVEVLRAAGYTNIEYHKG----ALDEEELKEAIKDAHFIGIRSRTQLTEEVLEAAEKLVAIGCFCI 84 (409)
T ss_pred CEEEEECCCCH--HHHHHHHHCCCEEEEECCC----CCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCC
T ss_conf 67998078898--9999999779977882689----99999999985679899991798739999943999719998321
Q ss_pred HH----HHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------HH------CCCCCCEEEEECCCCCCC
Q ss_conf 89----99976410122354445456789998642-------------------20------127775389721567562
Q gi|255764510|r 79 AS----ACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------KV------LFTPQKPLIYLGGKPRNF 129 (232)
Q Consensus 79 ~t----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~~------~~~~~~~vl~~~g~~~~~ 129 (232)
++ -+++.+.|......+..++...+|+..-. |. ....++++.++.-.....
T Consensus 85 G~dnIDl~aa~~~GI~V~NtPg~Na~aVAEl~i~l~L~l~R~i~~~~~~~~~G~W~k~~~~~~El~GKtlGIIG~G~IG~ 164 (409)
T PRK11790 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVLGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGT 164 (409)
T ss_pred CCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCHHHH
T ss_conf 57740899998699489969997728899999999999986479999999829987567775563587898636754769
Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCC--CCHHHHHHHHCCCCEEEEECHHH
Q ss_conf 0146898469825676887504689--99889998623783899807899
Q gi|255764510|r 130 HFEDYLIEHKIPLRVIDCYYSQDIA--YPETTMKNLLQNADAILFYARSS 177 (232)
Q Consensus 130 ~l~~~L~~~g~~v~~~~vY~~~~~~--~~~~~~~~~~~~~d~i~f~S~~~ 177 (232)
.+.+.++..|.+|..+.++...+.. .....+.+++...|+|.+--|..
T Consensus 165 ~VA~~a~~fGm~Vi~yD~~~~~~~~~~~~~~sl~ell~~sD~IslH~Plt 214 (409)
T PRK11790 165 QLSVLAESLGMRVIFYDIEDKLPLGNATQVGSLEELLAQSDVVSLHVPET 214 (409)
T ss_pred HHHHHHHHCCCEEEEECCHHHCCCCCCEECCCHHHHHHHCCEEEECCCCC
T ss_conf 99999987699899978602125668467488999987599999826798
No 23
>KOG4132 consensus
Probab=96.54 E-value=0.027 Score=33.02 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=59.7
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCC-----CCCCCCCCCEEEEECHHHHHHHHHHH------CCCCCEECCCHHHH
Q ss_conf 99999999879829994210000078520-----01644758799984846799988620------01363000415899
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESV-----FLAMQQSYGAIAITSSESLSTLPANF------CRHTPIFAIGEASA 81 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-----~~~~~~~~d~iiftS~~av~~~~~~~------~~~~~~~~vg~~t~ 81 (232)
+-+-.+|.+.|+.+=.+-+.+.+..++-. .+..-..-|||+|=||.+|++...+. ..++++.++|++|+
T Consensus 146 dil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~ 225 (260)
T KOG4132 146 DILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTR 225 (260)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHEEEEEECCCHH
T ss_conf 78899887377035578998635566378899999985697425999876017889999987334500205777576268
Q ss_pred HHHHHHCCCCCCCC-CCCHHHHHHHHH
Q ss_conf 99764101223544-454567899986
Q gi|255764510|r 82 CLARQKGFTQIFHG-KDNSINLAKIIV 107 (232)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~ll~ 107 (232)
+++.+.|....+.. .++.+.++..+.
T Consensus 226 kaL~~~g~~~~~vs~~P~pe~L~~~I~ 252 (260)
T KOG4132 226 KALEDLGVKVDVVSPAPDPESLADAIE 252 (260)
T ss_pred HHHHHCCCCCCEECCCCCHHHHHHHHH
T ss_conf 899975997631258999799999997
No 24
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.02 E-value=0.095 Score=29.78 Aligned_cols=164 Identities=13% Similarity=0.023 Sum_probs=95.7
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 93898589688699999999879829994210000078520016447587999848467999886200136300041589
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEAS 80 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t 80 (232)
|||++-...|...++ +.+.| ++..+|=- .....++.++|.++.-|..-|..-.... .++-.+|..|
T Consensus 1 MkI~~Denip~~~~~---f~~~g-~v~~~~gr-------~i~~~~l~daD~LiVRS~T~V~~~LL~~---s~lKfIgtat 66 (379)
T PRK00257 1 MKIVADENIPLLDEF---FAGFG-EIRRLPGR-------DFDRAAVRDADALLVRSVTRVDRALLEG---SKVRFVGTCT 66 (379)
T ss_pred CEEEEECCCCCHHHH---HHCCC-EEEECCCC-------CCCHHHHCCCCEEEEECCCCCCHHHHCC---CCCEEEEECC
T ss_conf 939984787207988---51068-08976899-------7998890778899995687448999756---9926999745
Q ss_pred -------HHHHHHHCCCCCCCCCCCHHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEE
Q ss_conf -------999764101223544454567899986-------422012777538972156756201468984698256768
Q gi|255764510|r 81 -------ACLARQKGFTQIFHGKDNSINLAKIIV-------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVID 146 (232)
Q Consensus 81 -------~~~~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~ 146 (232)
.+++.+.|......+..++...++... +.......++.+.++.-......+.+.|+..|++|..+.
T Consensus 67 ~G~DhID~~~l~~~gI~v~naPG~Na~sVaEyvl~~ll~la~~~g~~l~gktvGIIG~G~IG~~va~~l~afG~~vl~~D 146 (379)
T PRK00257 67 IGTDHLDLDYFAEAGITWSNAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGIVGVGHVGGRLVRVLRGLGWKVLVCD 146 (379)
T ss_pred CCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 63531469999869978996998777999999999999999850866519879997716799999999997799899978
Q ss_pred EEEECCCCC-CHHHHHHHHCCCCEEEEECHHHH
Q ss_conf 875046899-98899986237838998078999
Q gi|255764510|r 147 CYYSQDIAY-PETTMKNLLQNADAILFYARSSV 178 (232)
Q Consensus 147 vY~~~~~~~-~~~~~~~~~~~~d~i~f~S~~~v 178 (232)
.|+...... ....+.+++.+.|+|.+--|.+-
T Consensus 147 P~~~~~~~~~~~~sleell~~sDiIslHvPLt~ 179 (379)
T PRK00257 147 PPRQEAEGDGDFVSLERILEECDIISLHTPLTK 179 (379)
T ss_pred CHHHHHHCCCCEECHHHHHHHCCEEEEECCCCC
T ss_conf 457664338603349999874999999257777
No 25
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.61 E-value=0.13 Score=28.91 Aligned_cols=169 Identities=14% Similarity=0.041 Sum_probs=89.2
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE---CCC
Q ss_conf 38985896886999999998798299942100000785200164475879998484679-99886200136300---041
Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF---AIG 77 (232)
Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~---~vg 77 (232)
|||||++.++. -.++|++. +++...+- -.+.+.+.....+.++|++|..+..-+ +.+..... ..++. .+|
T Consensus 4 Kvlvt~~i~~~--~~~~L~~~-~~v~~~~~--~~~~~~~~l~~~i~~~d~li~~~~~~i~~~~l~~ap-~LK~I~~~gvG 77 (333)
T PRK13243 4 RVFITREIPEN--GIEMLEEH-FEVEVWED--EREIPREVLLEKVKDVDALVTMLSERIDAEVFEAAP-RLRIVANYAVG 77 (333)
T ss_pred EEEEECCCCHH--HHHHHHHC-CCEEEECC--CCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC-CCEEEEECCCC
T ss_conf 89996988999--99999717-95999269--999999999998679829998588858899994699-98099885746
Q ss_pred HH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH-----------------HH--H-------------HCCCCCCEEEEEC
Q ss_conf 58--9999764101223544454567899986-----------------42--2-------------0127775389721
Q gi|255764510|r 78 EA--SACLARQKGFTQIFHGKDNSINLAKIIV-----------------EQ--K-------------VLFTPQKPLIYLG 123 (232)
Q Consensus 78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~--~-------------~~~~~~~~vl~~~ 123 (232)
-. --+++.+.|......+...+...+|... .. + .....++++.++.
T Consensus 78 ~D~ID~~~a~~~gI~V~ntpg~~~~sVAE~~~~liL~~~R~i~~~~~~~r~g~w~~~~~~~~p~~~~g~eL~gktlGIiG 157 (333)
T PRK13243 78 YDNIDVEEATKRGIYVTNTPGVLTEATADFAFALLLATARRVVEADKFVRSGEWKRRGVAWHPMMFLGYDVYGKTIGIVG 157 (333)
T ss_pred CCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 43305999996997899689968479999999999999864999999998498664566667634456466788999979
Q ss_pred CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHHHHH
Q ss_conf 5675620146898469825676887504689998-------8999862378389980789999
Q gi|255764510|r 124 GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARSSVL 179 (232)
Q Consensus 124 g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~~v~ 179 (232)
-......+.+.++..|.+|. .|.....+... ..+.+++.+.|+|.+.-|.+-+
T Consensus 158 ~G~IG~~vak~~~~fgm~V~---~~d~~~~~~~~~~~~~~~~~l~ell~~sDiIslh~Plt~e 217 (333)
T PRK13243 158 FGRIGQAIARRAKGFGMRIL---YYSRTRKPEVEKELGAEYRPLEDLLRESDFVVLAVPLTKE 217 (333)
T ss_pred CCHHHHHHHHHHHHCCCEEE---EECCCCCHHHHHHCCCEEECHHHHHHHCCEEEECCCCCCC
T ss_conf 25668999999997699999---9899898667876096881199974216526642558601
No 26
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.03 E-value=0.25 Score=27.30 Aligned_cols=170 Identities=16% Similarity=0.111 Sum_probs=90.5
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCEECCCHH
Q ss_conf 9389858968869999999987982999421000007852001644758799984846799-988620013630004158
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPIFAIGEA 79 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~~~vg~~ 79 (232)
||||||.+.++. -.+.|++.| ++...|- ++.+.....+.+||+++.-|..-+. -+.....+-.-+...|-+
T Consensus 1 ~kvLi~d~i~~~--g~~~L~~~~-~v~~~~~-----~~~~el~~~i~~~d~livrs~t~v~~~~l~~a~~LK~I~r~GvG 72 (524)
T PRK13581 1 PKVLVSDPISPA--GVEILKDAG-EVDVKTG-----LDKEELLEIIGDYDALIVRSATKVTAEVIEAAKNLKVIGRAGVG 72 (524)
T ss_pred CEEEECCCCCHH--HHHHHHHCC-CEEECCC-----CCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCC
T ss_conf 969993787989--999998679-0997899-----89999998847996999878998299999269997699988816
Q ss_pred ----HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H------HCCCCCCEEEEECCCCCCCC
Q ss_conf ----999976410122354445456789998642-------------------2------01277753897215675620
Q gi|255764510|r 80 ----SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K------VLFTPQKPLIYLGGKPRNFH 130 (232)
Q Consensus 80 ----t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~------~~~~~~~~vl~~~g~~~~~~ 130 (232)
--.++.+.|......+..++...+|+..-. | -....++.+.++.-......
T Consensus 73 ~DnID~~aa~~~GI~V~ntP~~n~~svAE~~i~l~l~l~R~i~~~~~~~~~g~W~r~~~~G~eL~gktlGIiG~G~IG~~ 152 (524)
T PRK13581 73 VDNVDIPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQADASLKAGKWERKKFMGVELYGKTLGVIGLGRIGSE 152 (524)
T ss_pred CCHHCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHH
T ss_conf 75116999987899899489977288999999999998489779999998399675565662136988999776757899
Q ss_pred HHHHHHHCCCEEEEEEEEEECCCC----CCHHHHHHHHCCCCEEEEECHHHH
Q ss_conf 146898469825676887504689----998899986237838998078999
Q gi|255764510|r 131 FEDYLIEHKIPLRVIDCYYSQDIA----YPETTMKNLLQNADAILFYARSSV 178 (232)
Q Consensus 131 l~~~L~~~g~~v~~~~vY~~~~~~----~~~~~~~~~~~~~d~i~f~S~~~v 178 (232)
+.+.++..|..|.-+..|-..... .....+.+++.+.|+|.+--|.+-
T Consensus 153 vA~~~~~fgm~Vi~yDP~~~~~~~~~~gv~~~~l~ell~~sD~IslH~Plt~ 204 (524)
T PRK13581 153 VAKRAKAFGMKVIAYDPYISPERAAQLGVELVELDELLARADFITLHTPLTP 204 (524)
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHCCCEEEEHHHHHHHCCEEEECCCCCH
T ss_conf 9999985497478877764466798719668608997310889999367861
No 27
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.72 E-value=0.5 Score=25.44 Aligned_cols=180 Identities=10% Similarity=0.104 Sum_probs=95.4
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf 9999999879829994210000078-520016447587999848467999886200136300041589999764101223
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232)
.+...++++|++++....-.-.-.. .......-...|++|+++.+.-........++.|+..++.... ......+
T Consensus 20 gie~~~~~~gy~~ll~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~iPvV~i~~~~~----~~~~~~V 95 (265)
T cd06290 20 GMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGDLPEEEILALAEEIPVLAVGRRVP----GPGAASI 95 (265)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCC----CCCCCEE
T ss_conf 999999986998999979999799999999999659998999268888599999855999899825678----8999989
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH
Q ss_conf 54445456789998642201277753897215675620-------14689846982567688750468999-88999862
Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNLL 164 (232)
Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~~ 164 (232)
.. +....+..+.++... .+.+++.++.|...... +.+.++++|..+....++........ ......++
T Consensus 96 ~~---Dn~~~~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (265)
T cd06290 96 AV---DNFQGGYLATQHLID-LGHRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDFEEESGLEAVEELL 171 (265)
T ss_pred EE---CHHHHHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHH
T ss_conf 84---779999999999998-29986556048878701999999999999986999988883416677178999999999
Q ss_pred ---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH
Q ss_conf ---37838998078999999971354405----80399718899
Q gi|255764510|r 165 ---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI 201 (232)
Q Consensus 165 ---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t 201 (232)
..+|+|+..|-..+-.+...+...+. ++.++++...-
T Consensus 172 ~~~~~~~ai~~~nD~~A~g~~~~~~~~g~~vP~di~vigfD~~~ 215 (265)
T cd06290 172 QRGPDFTAIFAANDQTAYGARLALYRRGLRVPEDVSLIGFDDLP 215 (265)
T ss_pred HHCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHH
T ss_conf 71999884210578999999999998099999987999999878
No 28
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.28 E-value=0.59 Score=25.00 Aligned_cols=171 Identities=11% Similarity=0.002 Sum_probs=87.3
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE-ECCCH
Q ss_conf 938985896886999999998798299942100000785200164475879998484679-9988620013630-00415
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI-FAIGE 78 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~-~~vg~ 78 (232)
|||++.=....++.-...|++.| ++..+|-..- +.....+.++|. ++++..-+ +-+..... ..++ ...|.
T Consensus 1 mki~~ld~~~~~~~~~~~l~~~~-e~~~~~~~~~-----ee~~~~i~dadi-li~~~~~i~~e~l~~a~-~LK~I~~~g~ 72 (311)
T PRK08410 1 MKIVILDAKTLGDVDLSVFNEFG-DFQIYDTTSP-----EEVIERIKDANI-IITNKVVIDKEVLSALP-NLKLICITAT 72 (311)
T ss_pred CEEEEEECCCCCCCCHHHHHCCC-CEEEECCCCH-----HHHHHHHCCCCE-EEECCCCCCHHHHHCCC-CCEEEEECCC
T ss_conf 95999937867722658770577-5899789898-----999998389949-99748854999993699-9849998881
Q ss_pred HH----HHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------HH------------CCCCCCEEEEEC
Q ss_conf 89----99976410122354445456789998642-------------------20------------127775389721
Q gi|255764510|r 79 AS----ACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------KV------------LFTPQKPLIYLG 123 (232)
Q Consensus 79 ~t----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~~------------~~~~~~~vl~~~ 123 (232)
++ ..++.+.|......+...+...++...-. +. ....++.+.++.
T Consensus 73 G~D~ID~~aa~~~gI~V~n~p~~~~~aVAE~~l~~iL~l~r~i~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktlGIvG 152 (311)
T PRK08410 73 GTNNVDLEYAKKRGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDNYVKSGEYSKSPIFTHISRPLGEIKGKKWGIIG 152 (311)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 56142199999799689927997848899999999999985579999999716533465222247653510588899984
Q ss_pred CCCCCCCHHHHHHHCCCEEEEEEEEEECCCC-CCHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 5675620146898469825676887504689-9988999862378389980789999
Q gi|255764510|r 124 GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA-YPETTMKNLLQNADAILFYARSSVL 179 (232)
Q Consensus 124 g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-~~~~~~~~~~~~~d~i~f~S~~~v~ 179 (232)
-......+.+.++..|.+|..+.-+...... .....+.+++.+.|+|.+.-|.+-+
T Consensus 153 ~G~IG~~va~~l~~fGm~V~~~d~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~ 209 (311)
T PRK08410 153 LGTIGKRVAKIAQAFGAEVVYYSTSGKNKNSEYERLSLEELLKTSDIISIHAPLNEK 209 (311)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECCHHHHHHHCCEEEEECCCCCC
T ss_conf 474899999999976998999898431245781357899998737801453357622
No 29
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=92.91 E-value=0.67 Score=24.67 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=98.3
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 99999999879829994210000078-52001644758799984846-79998862001363000415899997641012
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
..+...++++|+.++.+..-.-.... .......-...|++|+.+.. .-..+......+.|+..++.... .....
T Consensus 19 ~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIi~~~~~~~~~~~~l~~~~iPvV~id~~~~----~~~~~ 94 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFVDREIT----GSPIP 94 (265)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCC----CCCCC
T ss_conf 99999999859989999789998999999999994799999998067998999999966998998378689----99886
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH
Q ss_conf 2354445456789998642201277753897215675620-------146898469825676887504689998-89998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232)
.+. .+.......+.++.. ..+.+++.++.|...... +.+.+.++|..+....++......... .....
T Consensus 95 ~V~---~d~~~~~~~a~~~L~-~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 170 (265)
T cd06299 95 FVT---SDPQPGMTEAVSLLV-ALGHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATK 170 (265)
T ss_pred EEE---ECHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 899---676999999999999-7499838860489887569999999999999769999930599840355789999999
Q ss_pred HH-CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHH
Q ss_conf 62-37838998078999999971354405----803997188999999
Q gi|255764510|r 163 LL-QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAI 205 (232)
Q Consensus 163 ~~-~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232)
++ .++++|+.++-..+....+.+...+. ++.++++...--...
T Consensus 171 ~l~~~p~ai~~~nD~~A~g~~~~l~~~g~~vP~dvsvvgfd~~~~~~~ 218 (265)
T cd06299 171 LLDQGATAIIAGDSMMTIGAIRAIHDAGLVIGEDISLIGFDDLPVFRL 218 (265)
T ss_pred HHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf 996399854506858899999999983899999349999997588985
No 30
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=92.38 E-value=0.8 Score=24.24 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=100.6
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCC--CCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 999999998798299942100000785--200164475879998484679998862001363000415899997641012
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRE--SVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~--~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
..+...+.+.|++++..-.-. .+... ......-...|+||+.+...-.........+.|+..++... ......
T Consensus 19 ~gi~~~~~~~gy~~~i~~s~~-~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~PvV~i~~~~----~~~~~~ 93 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDTRS-DPEREQEYLDLLRRKQADGIILLDGSLPPTALTALAKLPPIVQACEYI----PGLAVP 93 (267)
T ss_pred HHHHHHHHHCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEECCCC----CCCCCC
T ss_conf 999999998699899997899-989999999999847998599827889999999984799999986778----889998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf 2354445456789998642201277753897215675620-------14689846982567688750468999-889998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232)
.+. .+....+..+.+.... .+.+++.++.|...... +.+.++++|..+....++........ ......
T Consensus 94 ~V~---~Dn~~a~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (267)
T cd06284 94 SVS---IDNVAAARLAVDHLIS-LGHRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARR 169 (267)
T ss_pred EEE---ECHHHHHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 899---6789999999999997-099769996288887259999999999999839985512773278767778899999
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCC
Q ss_conf 62---37838998078999999971354405----80399718899999997699
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYK 210 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~ 210 (232)
++ .++|+|+.++-..+....+.+...+. ++.+++++..--..+-.-..
T Consensus 170 ~l~~~~~~~ai~~~nD~~A~g~~~~l~~~g~~vP~di~vigfd~~~~~~~~~p~l 224 (267)
T cd06284 170 LLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDIDFARMTTPPL 224 (267)
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHCCCCC
T ss_conf 9965999980265786889999999998399999627999877848998248983
No 31
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=92.33 E-value=0.81 Score=24.20 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=94.4
Q ss_pred HHHHHHHHCCCCEEEECCEE-EECCCCCCCCCCCCCCCEEEEECHHHHHHHH-HHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999998798299942100-0007852001644758799984846799988-620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSY-FIHDRESVFLAMQQSYGAIAITSSESLSTLP-ANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~-i~~~~~~~~~~~~~~~d~iiftS~~av~~~~-~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.....++++|++++..+.-. .+..............|+||+.+...-.... .......|+..++.... ......
T Consensus 79 gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~----~~~~~~ 154 (333)
T COG1609 79 GIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPP----GLGVPS 154 (333)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCC----CCCCCE
T ss_conf 9999999839989998378986999999999987698989993587880889999865999899937677----778977
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEE-EEEEEEEECCCCCCHHHHHHH
Q ss_conf 3544454567899986422012777538972156756-------20146898469825-676887504689998899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPL-RVIDCYYSQDIAYPETTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v-~~~~vY~~~~~~~~~~~~~~~ 163 (232)
+... ....+..+.++.. ..+.+++.++.|.... .-+.+.|.++|... ........-....-......+
T Consensus 155 V~~D---n~~~~~~a~~~L~-~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~l 230 (333)
T COG1609 155 VGID---NFAGAYLATEHLI-ELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERL 230 (333)
T ss_pred EECC---HHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9709---8999999999999-87998599996798772189999999999997599977423661678878999999999
Q ss_pred H---CC-CCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf 2---37-838998078999999971354405----8039971889
Q gi|255764510|r 164 L---QN-ADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232)
Q Consensus 164 ~---~~-~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232)
+ .+ +++|+.+|-..+...++.+...+. ++.++++...
T Consensus 231 l~~~~~~ptAif~~nD~~Alg~l~~~~~~g~~vP~disviGfDd~ 275 (333)
T COG1609 231 LARGEPRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFDDI 275 (333)
T ss_pred HHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 854899997899878099999999999808999987899998884
No 32
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=91.86 E-value=0.92 Score=23.87 Aligned_cols=199 Identities=13% Similarity=0.051 Sum_probs=100.9
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 9999999879829994210000078-52001644758799984846--79998862001363000415899997641012
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
.+.+.+.++|++++..+.-.-.... ...........|++|+.+.+ ..+........+.|+..++...... ....
T Consensus 20 gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~---~~~~ 96 (264)
T cd01537 20 GIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPDG---DRVP 96 (264)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC---CCCE
T ss_conf 9999999869989999799998999999999997699999996798886899999997599799985667888---8871
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHH
Q ss_conf 2354445456789998642201277753897215675620-------14689846982567688750468-999889998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~ 162 (232)
.+. .+....+..+.+.... ...+++.++.+...... +.+.+.+.|........| .... ....+.+..
T Consensus 97 ~V~---~d~~~~g~~~~~~l~~-~g~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 171 (264)
T cd01537 97 SVG---SDNEQAGYLAGEHLAE-KGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQE-GDWDAEKGYQAAEE 171 (264)
T ss_pred EEE---ECHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCHHHHHHHHHH
T ss_conf 999---7779999999999986-298624530488777069999999999999779998537995-79998999999999
Q ss_pred HHC---CCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 623---7838998078999999971354405----80399718899999997699669987999988
Q gi|255764510|r 163 LLQ---NADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKNVVTVACFPKET 222 (232)
Q Consensus 163 ~~~---~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~ 222 (232)
++. ++|+|+..+-..+....+.+...+. ++.+++++..-... ..+-....+...+..-
T Consensus 172 ~l~~~~~~dai~~~~d~~A~gv~~al~~~g~~ip~di~ivg~d~~~~~~--~~~p~ltti~~~~~~~ 236 (264)
T cd01537 172 LLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTPEAL--LAGPPLTTVRQPPDEL 236 (264)
T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH--HHCCCEEEEECCHHHH
T ss_conf 9850899769998986999999999997499999983999999749999--7199829998399999
No 33
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=91.71 E-value=0.95 Score=23.77 Aligned_cols=142 Identities=15% Similarity=0.060 Sum_probs=80.4
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE--ECCCHH
Q ss_conf 8985896886999999998798299942100000785200164475879998484679-9988620013630--004158
Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI--FAIGEA 79 (232)
Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~--~~vg~~ 79 (232)
||||++. ...-.+.|++.|+++...+- .+.+.....+.++|+++..+..-+ +-+.....+-.-+ +.+|-.
T Consensus 1 Ili~~~i--~~~~~~~L~~~g~ev~~~~~-----~~~eel~~~~~~~d~li~~~~~~i~~e~l~~~~~LK~I~~~~~G~D 73 (313)
T pfam00389 1 VLITDPI--RPEELELLKEAGHEVEVHDE-----LLTEELLEAAKDADALIVRSTTPVTAEVLEAAPGLKVIARRGVGVD 73 (313)
T ss_pred CEECCCC--CHHHHHHHHHCCCEEEECCC-----CCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCCCC
T ss_conf 9876768--99999999978988998999-----9989999983898299985899768999944999849998884455
Q ss_pred --HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------------HHCCCCCCEEEEECCCCCCCCHH
Q ss_conf --999976410122354445456789998642-------------------------20127775389721567562014
Q gi|255764510|r 80 --SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------------KVLFTPQKPLIYLGGKPRNFHFE 132 (232)
Q Consensus 80 --t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------------~~~~~~~~~vl~~~g~~~~~~l~ 132 (232)
=-.++.+.|......+...+...+|...-. ......++.+.++..........
T Consensus 74 ~ID~~~a~~~gI~V~n~p~~~~~aVAE~~i~l~L~l~R~~~~~~~~~r~g~w~~~~~~~~~l~~~~~giiG~G~iG~~va 153 (313)
T pfam00389 74 NIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKKGGPIGLELRGKTLGVIGGGGIGGIGA 153 (313)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHH
T ss_conf 30599999799999989987728999999999999712307889999808766556555336898899994654369999
Q ss_pred HHHHHCCCEEEEEEEEEEC
Q ss_conf 6898469825676887504
Q gi|255764510|r 133 DYLIEHKIPLRVIDCYYSQ 151 (232)
Q Consensus 133 ~~L~~~g~~v~~~~vY~~~ 151 (232)
..+...|..+..+..|...
T Consensus 154 ~~~~~~g~~v~~~d~~~~~ 172 (313)
T pfam00389 154 AIAKALGMGVVAYDPYPNP 172 (313)
T ss_pred HHHHHCCCEEEEEECCCCH
T ss_conf 9999769869999579986
No 34
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=90.98 E-value=1.1 Score=23.33 Aligned_cols=179 Identities=11% Similarity=0.077 Sum_probs=93.1
Q ss_pred HHHHHHHHCCCCEEEECCEE-EECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH-CCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999998798299942100-0007852001644758799984846799988620-013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSY-FIHDRESVFLAMQQSYGAIAITSSESLSTLPANF-CRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~-i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~-~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.+...++++|++++.+-.-. ...-........-...|+||+++...-......+ ..+.|+..++...... ...
T Consensus 20 gi~~~~~~~gy~~~i~~s~~d~~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~-----~~~ 94 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHTERTRQLLRAAGIPVVEIMDLPPDP-----IDM 94 (268)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC-----CCC
T ss_conf 999999986999999978999899999999999569999999437799899999997799699848868888-----885
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHH
Q ss_conf 35444545678999864220127775389721567562-------014689846982567688750468999-8899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~ 163 (232)
.+ ..+.........++... .+.+++.++.|..... -+.+.|.++|........+........ ...+..+
T Consensus 95 ~V--~~Dn~~~~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (268)
T cd01575 95 AV--GFSHAEAGRAMARHLLA-RGYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAEL 171 (268)
T ss_pred EE--ECCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 89--73889999999999997-4997699984898873699999999999997698988089954899889999999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf 2---37838998078999999971354405----8039971889
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232)
+ .++|+|+.++-..+....+.+...+. ++.+++++..
T Consensus 172 l~~~~~~dai~~~nD~~A~g~~~~l~~~g~~iP~disvigfdd~ 215 (268)
T cd01575 172 LARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGDL 215 (268)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCH
T ss_conf 95699983799878899999999999838999997799998973
No 35
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=90.94 E-value=1.1 Score=23.30 Aligned_cols=179 Identities=14% Similarity=0.166 Sum_probs=92.3
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999998798299942100000785-2001644758799984846-799988620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.....++++|++++....-.-..... ......-...|+||+++.+ ..+ .....+.|+..++.... .....
T Consensus 20 gi~~~~~~~Gy~l~i~~s~~~~~~e~~~l~~l~~~~vDGiI~~~~~~~~~---~~~~~~iPvV~~d~~~~-----~~~~~ 91 (265)
T cd06291 20 AVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHNLGIE---EYENIDLPIVSFDRYLS-----ENIPI 91 (265)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH---HHHHCCCCEEEEECCCC-----CCCCE
T ss_conf 99999998799899996899989999999999856998587417884099---99977999999705579-----99998
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 35444545678999864220127775389721567562--------0146898469825676887504689998899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~ 163 (232)
+.. +....+..+.++.. ..+.+++.++.|..... -+.+.|+++|..+....++..............+
T Consensus 92 V~~---Dn~~~~~~a~~~L~-~~Ghr~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 167 (265)
T cd06291 92 VSS---DNYEGGRLAAEELI-ERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQENFDDAEKKEEIKEL 167 (265)
T ss_pred EEE---CHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 997---76999999999999-73996499996688887489999999999999769996089976889869999999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHH
Q ss_conf 2---37838998078999999971354405----80399718899999
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASA 204 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~ 204 (232)
+ .++++|+.++-..+....+.+...+. ++.++++...--..
T Consensus 168 l~~~~~~~Ai~~~nD~~A~g~~~al~~~g~~vP~disvigfDd~~~~~ 215 (265)
T cd06291 168 LEEYPDIDGIFASNDLTAILVLKEAQQRGIRVPEDLQIIGYDGTKLTR 215 (265)
T ss_pred HHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
T ss_conf 855999884321668999999999998199999986999988809998
No 36
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.44 E-value=1.3 Score=23.03 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=92.4
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf 999999987982999421000007852-0016447587999848467999886200136300041589999764101223
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232)
...+.+.+.|+.++.+..-.-...... .....-...|+||++|..-=.........+.|+..++.... ......+
T Consensus 21 gie~~~~~~gY~~~i~~s~~~~~~e~~~l~~l~~~~vdGiI~~~~~~~~~~~~~~~~~~PvV~i~~~~~----~~~~~~V 96 (269)
T cd06288 21 GAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATMYHREVTLPPELLSVPTVLLNCYDA----DGALPSV 96 (269)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCC----CCCCCEE
T ss_conf 999999986998999968999899999999999479999999678886635999866999999767468----9998889
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH
Q ss_conf 5444545678999864220127775389721567562-------014689846982567688750468999-88999862
Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNLL 164 (232)
Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~~ 164 (232)
.. + .......+.++... .+.+++.++.+..... -+.+.+.++|.......++........ ......++
T Consensus 97 ~~--D-~~~a~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~ll 172 (269)
T cd06288 97 VP--D-EEQGGYDATRHLLA-AGHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALL 172 (269)
T ss_pred EE--C-HHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 97--7-89999999999998-48875578748988757999999999999976998664224126776677777779998
Q ss_pred ---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf ---37838998078999999971354405----8039971889
Q gi|255764510|r 165 ---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232)
Q Consensus 165 ---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232)
.++|+|+..|-..+-.+++.+...+. ++.++++...
T Consensus 173 ~~~~~~dai~~~~d~~A~g~~~~l~~~gi~vP~di~iigfD~~ 215 (269)
T cd06288 173 DLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDNQ 215 (269)
T ss_pred HCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 5589986101477899999999999859999998899998886
No 37
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.18 E-value=1.3 Score=22.90 Aligned_cols=181 Identities=10% Similarity=0.058 Sum_probs=99.2
Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 69999999987982999421000007852-00164475879998484679998862001363000415899997641012
Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
.....+.++++|++++....-.-...... .....-...|++|+++...-+.+......+.|+..++.... .....
T Consensus 21 ~~gie~~~~~~Gy~lll~~~~~~~~~e~~~~~~l~~~~vdGiI~~~~~~~~~~~~l~~~~~P~V~id~~~~----~~~~~ 96 (268)
T cd06277 21 YRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGISTEYIKEIKELGIPFVLVDHYIP----NEKAD 96 (268)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCC----CCCCC
T ss_conf 99999999984998999938999899999999999489878999789997999999975998999677689----99998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 235444545678999864220127775389721567562-------0146898469825676887504689998899986
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL 163 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~ 163 (232)
.+. .+....+..+.++.. ..+.+++.++.+..... -+.+.|+++|..+....++..... ..+.....
T Consensus 97 ~V~---~Dn~~a~~~a~~~L~-~~Ghr~I~~i~~~~~~~~~~~R~~Gf~~al~~~gl~~~~~~~~~~~~~--~~~~~~~~ 170 (268)
T cd06277 97 CVL---TDNYSGAYAATEYLI-EKGHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEKEE--DEEDIGKF 170 (268)
T ss_pred EEE---ECHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC--HHHHHHHH
T ss_conf 899---665999999999999-709983699727888812999999999999985999982246625877--79999999
Q ss_pred ----HCCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHH
Q ss_conf ----237838998078999999971354405----803997188999
Q gi|255764510|r 164 ----LQNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIA 202 (232)
Q Consensus 164 ----~~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA 202 (232)
...+++|+.++-..+..+++.+...+. ++.++++...--
T Consensus 171 ~~~~~~~ptAi~~~nD~~A~g~~~~l~~~g~~vP~Disivgfdd~~~ 217 (268)
T cd06277 171 IDELKPLPTAFFCSNDGVAFLLIKVLKEMGIRVPEDVSVIGFDDIEY 217 (268)
T ss_pred HHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHH
T ss_conf 98478899879968859999999999985999998628999788789
No 38
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=90.07 E-value=1.4 Score=22.84 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=98.2
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 9999999879829994210000078-52001644758799984846-799988620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
...+.++++|++++....-.-.... .......-...|+||+++.. .-..+........|+..++.... ......
T Consensus 20 ~ie~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~PvV~i~~~~~----~~~~~~ 95 (268)
T cd06270 20 GVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDDELIELAAQVPPLVLINRHIP----GLADRC 95 (268)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE
T ss_conf 9999999859999999589998999999999996599999995277998999999964998999867689----998988
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHH
Q ss_conf 354445456789998642201277753897215675620-------146898469825676887504689998-899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~ 163 (232)
+. .+.......+.++.. ..+.+++.++.|...... +.+.|.++|..+....++......... +....+
T Consensus 96 V~---~Dn~~~~~~a~~~L~-~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~gl~~~~~~i~~~~~~~~~g~~~~~~l 171 (268)
T cd06270 96 IW---LDNEQGGYLATEHLI-ELGHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEGGYAAMQEL 171 (268)
T ss_pred EE---ECHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 98---388999999999999-83998389845988883199999999999998599978004761677678899988999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHH
Q ss_conf 2---37838998078999999971354405----803997188999999
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAI 205 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232)
+ .++|+|+.++-..+-.+.+.+...+. ++.++++...--...
T Consensus 172 l~~~~~~~ai~~~nD~~A~g~~~~l~~~g~~vP~disvigfdd~~~~~~ 220 (268)
T cd06270 172 LARGAPFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDDVLLARY 220 (268)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
T ss_conf 9569998745533779999999999982999999769999898689971
No 39
>PRK08250 glutamine amidotransferase; Provisional
Probab=89.98 E-value=0.62 Score=24.88 Aligned_cols=51 Identities=6% Similarity=-0.049 Sum_probs=38.7
Q ss_pred CEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 9389858--9688699999999879829994210000078520016447587999848
Q gi|255764510|r 1 MYIVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232)
Q Consensus 1 M~ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232)
|||+|.+ |.+....+.+.|++.|++.....+..-.+++ ....+||++|+.-
T Consensus 1 MrilviqH~~~E~pG~i~~~l~~~G~~~~~~~~~~g~~lP-----~~~~~~d~liVlG 53 (235)
T PRK08250 1 MRVHFIIHESFESPGAYLKWAEDRGYTISWSRVYAGEALP-----ENADGFDMLIVLG 53 (235)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCC-----CCCCCCCEEEEEC
T ss_conf 9799998189989707899999789969999668999899-----9810258899978
No 40
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=89.62 E-value=1.5 Score=22.63 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=96.5
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 9999999987982999421000007-85200164475879998484679-998862001363000415899997641012
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
..+.+.+.+.|++++..+.-.-... ............|++|+.+...- .........+.|+..++..... ....
T Consensus 19 ~gi~~~a~~~gy~~~i~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----~~~~ 94 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAALGIPVVLVDRPLDG----LGVD 94 (264)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCC----CCCC
T ss_conf 999999998699899997899989999999999957999999678889989999999869988999604799----9987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf 2354445456789998642201277753897215675620-------14689846982567688750468999-889998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232)
.+. .+.......+.++... .+.+++.++.+...... +.+.+.++|.......++........ ...+..
T Consensus 95 ~V~---~D~~~a~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (264)
T cd06267 95 SVG---IDNRAGAYLAVEHLIE-LGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARE 170 (264)
T ss_pred EEE---ECHHHHHHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHH
T ss_conf 999---7879999999999987-188856896389877069999999999999869998853075278977999999999
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHH
Q ss_conf 62---37838998078999999971354405----8039971889999
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIAS 203 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~ 203 (232)
++ .++++|+..+-..+..+.+.+...+. ++.+++++..-..
T Consensus 171 ~l~~~~~~~ai~~~~D~~A~g~~~~l~~~g~~iP~di~Iig~d~~~~~ 218 (264)
T cd06267 171 LLASGERPTAIFAANDLMAIGALRALRELGLRVPEDVSVVGFDDIPLA 218 (264)
T ss_pred HHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
T ss_conf 996599998998788799999999999829999997799999984898
No 41
>PRK08605 D-lactate dehydrogenase; Validated
Probab=88.90 E-value=1.7 Score=22.31 Aligned_cols=174 Identities=10% Similarity=0.016 Sum_probs=87.4
Q ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCC-CCCEE---
Q ss_conf 93898589688-69999999987982999421000007852001644758799984846799-98862001-36300---
Q gi|255764510|r 1 MYIVITRPIKK-ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCR-HTPIF--- 74 (232)
Q Consensus 1 M~ilitRp~~~-a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~-~~~~~--- 74 (232)
|||++.--+++ ..-+....+++|+++-..|-. ++.+ ......+||+|+..|..-+. -+.....+ ..++.
T Consensus 2 ~Ki~~~~~~~~e~~~~~~~~~~~~~ev~~~~~~----~~ee-~i~~~~~~D~i~v~~~~~i~~~vl~~~~~l~iK~I~r~ 76 (332)
T PRK08605 2 TKIKLMSVRDEDAPYIKAWAEKHHVEVDLTKEA----LTDD-NVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR 76 (332)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCC----CCHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 769998276656999999888659079996699----9989-99985799889997079779999996663697799977
Q ss_pred CCCHHH--HHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------HH-------CCCCCCEEEEECCCC
Q ss_conf 041589--99976410122354445456789998642-------------------20-------127775389721567
Q gi|255764510|r 75 AIGEAS--ACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------KV-------LFTPQKPLIYLGGKP 126 (232)
Q Consensus 75 ~vg~~t--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~~-------~~~~~~~vl~~~g~~ 126 (232)
.+|-.. -.++.+.|......+...+...+++..-. +. ....++.+.++....
T Consensus 77 gvG~DnIDl~~a~~~gI~V~n~P~~~~~aVAE~ai~liL~l~R~i~~~~~~~~~~~~~w~~~~~g~~l~~ktvGIiG~G~ 156 (332)
T PRK08605 77 SAGFDTYDLELANKYNIIISNVPSYSPESIAEFTVTQAINLVRHFNLIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGR 156 (332)
T ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEEH
T ss_conf 72174546999997999899599868489999999999999856599999998258764776575450377899997436
Q ss_pred CCCCHHHHH-HHCCCEEEEEEEEEECCCCC---CHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 562014689-84698256768875046899---988999862378389980789999
Q gi|255764510|r 127 RNFHFEDYL-IEHKIPLRVIDCYYSQDIAY---PETTMKNLLQNADAILFYARSSVL 179 (232)
Q Consensus 127 ~~~~l~~~L-~~~g~~v~~~~vY~~~~~~~---~~~~~~~~~~~~d~i~f~S~~~v~ 179 (232)
....+.+.+ +..|.+|..+..|....... ....+.+++.+.|.|.+--|.+-+
T Consensus 157 IG~~vak~~a~~fgm~vi~yd~~~~~~~~~~~~~~~~l~ell~~sDiIslh~Plt~~ 213 (332)
T PRK08605 157 IGLAVAKIFAKGYGCDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKY 213 (332)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCEECCCHHHHHHHCCEEEEECCCCHH
T ss_conf 889999999875698267877887655662070216899998649999993368835
No 42
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=88.07 E-value=1.9 Score=21.98 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=76.0
Q ss_pred CCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 587999--848467999886200136300041589999764101223544454567899986422012777538972156
Q gi|255764510|r 48 SYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK 125 (232)
Q Consensus 48 ~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~ 125 (232)
+.+.|+ ++|..+............++........ .+........+............+.+......+.+++.++..+
T Consensus 66 ~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~vaiv~~d 144 (298)
T cd06268 66 GVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSP-ALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDD 144 (298)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCH-HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 973997477578889999999871921880575425-5406789978992498699999999999983498589997787
Q ss_pred -----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEEC-HHHHHHHHHHCCHHHCCEEEEEC
Q ss_conf -----756201468984698256768875046899988999862-3783899807-89999999713544058039971
Q gi|255764510|r 126 -----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYA-RSSVLYFFSLPLPAKISAAFLCL 197 (232)
Q Consensus 126 -----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S-~~~v~~~~~~~~~~~~~~~~~~i 197 (232)
...+.+.+.+++.|..+.....|..... +....+..+. .++|+|++.+ +.....+++.+...+....++..
T Consensus 145 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (298)
T cd06268 145 YAYGRGLAAAFREALKKLGGEVVAEETYPPGAT-DFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREAGLKVPIVGG 222 (298)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 346799999999989974998999996487657-779999999976999999917626789999999982999739995
No 43
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=87.85 E-value=2 Score=21.90 Aligned_cols=186 Identities=16% Similarity=0.129 Sum_probs=95.8
Q ss_pred HHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHH-HCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 999999987982999421000007-85200164475879998484679998862-0013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPAN-FCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~-~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.....++++|++++....-.-... ........-...|+||+++...-...... ...+.|+..++... .+...
T Consensus 20 gie~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl~~~~~~~~~~~~l~~~~iPvV~i~~~~------~~~~~ 93 (259)
T cd01542 20 GILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTITDEHREAIKKLNVPVVVVGQDY------PGISS 93 (259)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCC------CCCCE
T ss_conf 999999986998999978999899999999999569998999377777599999996699999959868------99988
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC--------CCHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf 3544454567899986422012777538972156756--------2014689846982567688750468999-889998
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN--------FHFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~--------~~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232)
+.. +....+..+.++.. ..+.+++.++.+.... .-+.+.|+++|.... .+|........ .+....
T Consensus 94 V~~---Dn~~~~~~a~~~L~-~~Ghr~I~~i~~~~~~~~~~~~R~~G~~~al~~~g~~~~--~~~~~~~~~~~~~~~~~~ 167 (259)
T cd01542 94 VVY---DDYGAGYELGEYLA-QQGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGICPP--NIVETDFSYESAYEAAQE 167 (259)
T ss_pred EEE---CHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC--EEEECCCCHHHHHHHHHH
T ss_conf 998---67999999999999-828985999955865606799999999999997699963--599657877789999999
Q ss_pred HH--CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCC
Q ss_conf 62--37838998078999999971354405----803997188999999976996
Q gi|255764510|r 163 LL--QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKN 211 (232)
Q Consensus 163 ~~--~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~ 211 (232)
++ .++++|+.++-..+..+++.+...+. ++.++++...--...-.-++.
T Consensus 168 ll~~~~~~Ai~~~nD~~A~g~~~~l~~~g~~vP~Disvigfdd~~~~~~~~P~LT 222 (259)
T cd01542 168 LLEPQPPDAIVCATDTIALGAMKYLQELGRRIPEDISVAGFGGYELSSVVTPSLT 222 (259)
T ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHCCCCCE
T ss_conf 9745799832434589999999999981999999869999898299982689978
No 44
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=87.78 E-value=2 Score=21.87 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=98.3
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHHHHHH-HHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 999999998798299942100000785-2001644758799984846799988-62001363000415899997641012
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESLSTLP-ANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av~~~~-~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
..+...+.+.|+.++....-.-..... ......-...|++|+++...-.... .......|+..++... .+..
T Consensus 19 ~~i~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~------~~~~ 92 (265)
T cd06285 19 EGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTRRGVPFVLVLRHA------GTSP 92 (265)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCC------CCCC
T ss_conf 9999999986998999979999899999999999569999997688799899999996799789985568------9999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf 235444545678999864220127775389721567562-------014689846982567688750468999-889998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232)
.+.. +....+..+.++.. ..+.+++.++.|..... -+.+.++++|..+....++........ ......
T Consensus 93 ~v~~---dn~~~~~~~~~~Li-~~G~~~i~~l~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (265)
T cd06285 93 AVTG---DDVLGGRLATRHLL-DLGHRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYSGFDIEGGEAAAEK 168 (265)
T ss_pred EEEE---CHHHHHHHHHHHHH-HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCHHHHHHHHHH
T ss_conf 7987---77999999999999-8388658754788777059999999999999869998756601366215569999999
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHH
Q ss_conf 62---37838998078999999971354405----803997188999
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIA 202 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA 202 (232)
++ ..+|+++.++-..+..+++.+...+. ++.+++++..-.
T Consensus 169 ~l~~~~~~~ai~~~nD~~A~g~~~~l~~~g~~iP~di~iigfd~~~~ 215 (265)
T cd06285 169 LLRSDSPPTAIFAVNDFAAIGVMGAARDRGLRVPDDVALVGYNDIPL 215 (265)
T ss_pred HHHCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH
T ss_conf 98569998810037889999999999985999999879999878289
No 45
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=87.65 E-value=2 Score=21.83 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=94.7
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHH--HHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 99999998798299942100000785-200164475879998484679--998862001363000415899997641012
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESL--STLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av--~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
.+...+.++|+.++.+..-.-..... ......-...|++|+++.... .........+.|+..++... .....
T Consensus 20 gi~~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~iPvV~~~r~~-----~~~~~ 94 (269)
T cd06281 20 GAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDM-----GGGAD 94 (269)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCC-----CCCCC
T ss_conf 9999999869989999689998999999999985799899976777799999999984799889984468-----99999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 235444545678999864220127775389721567562-------0146898469825676887504689998899986
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL 163 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~ 163 (232)
.+.. +.........++.. ..+.+++.++.|..... -+.+.|.++|..+....++..............+
T Consensus 95 ~V~~---D~~~~~~~a~~~L~-~~G~~~I~~i~~~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~l 170 (269)
T cd06281 95 AVLF---DHAAGMRQAVEYLI-SLGHRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLSTPAASGFDATRAL 170 (269)
T ss_pred EEEE---CHHHHHHHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 8998---75999999999999-7599866898078877679999999999999779999943997799748999999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHH
Q ss_conf 2---37838998078999999971354405----80399718899999
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASA 204 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~ 204 (232)
+ .++++++.+|-..+...++.+...+. ++.++++...-...
T Consensus 171 l~~~~~p~ai~~~~d~~A~g~l~~l~~~g~~VP~disviGfD~~~~~~ 218 (269)
T cd06281 171 LALPDRPTAIIAGGTQVLVGVLRALREAGLRIPRDLSVISIGDSDLAE 218 (269)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
T ss_conf 807999965651233889999999998199999986999988879998
No 46
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=86.98 E-value=2.2 Score=21.59 Aligned_cols=148 Identities=10% Similarity=0.058 Sum_probs=68.3
Q ss_pred CCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC-
Q ss_conf 7587999--8484679998862001363000415899997641012235444545678999864220127775389721-
Q gi|255764510|r 47 QSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLG- 123 (232)
Q Consensus 47 ~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~- 123 (232)
++.+.|+ .+|..+..........+.++...+.. ...+...+....+...+........+..+.....+.+++.++.
T Consensus 65 ~~v~aiiG~~~s~~~~a~~~~~~~~~vp~is~~a~-~~~l~~~~~~~~fr~~~~~~~~~~~~~~~l~~~~~~~~vai~~~ 143 (334)
T cd06342 65 DGVVGVVGHLNSGVTIPASPIYADAGIVMISPAAT-NPKLTERGYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDD 143 (334)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHHHCCEEECCCCC-CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 69848864664787887557899739703035767-85123479982899008878999999999998759968999915
Q ss_pred ----CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEE-CHHHHHHHHHHCCHHHCCEEEEE
Q ss_conf ----56756201468984698256768875046899988999862-378389980-78999999971354405803997
Q gi|255764510|r 124 ----GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFY-ARSSVLYFFSLPLPAKISAAFLC 196 (232)
Q Consensus 124 ----g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~-S~~~v~~~~~~~~~~~~~~~~~~ 196 (232)
|......+.+.|++.|..+....-|..... +....+..+. .++|.|++. .+..+..+++.+...+.+..++.
T Consensus 144 ~~~~g~~~~~~~~~~l~~~g~~vv~~~~~~~~~~-d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 144 KTAYGQGLADEFKKALKAAGGKVVAREGTTDGAT-DFSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 6554455799999999974983999996588766-65789999986599999992675589999999997699975999
No 47
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.54 E-value=2.3 Score=21.45 Aligned_cols=183 Identities=16% Similarity=0.080 Sum_probs=93.9
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCC-CCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 9999999879829994210000078520-016447587999848467999886-20013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESV-FLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
...+.+.++|+..+....-+-....... ....-...|++|+.+...-.-... ....+.|+..++.... ....
T Consensus 25 gie~~~~~~Gy~lli~~~~~~~~~~~~~~~~l~~~~vDGiIi~~~~~~~~~~~~l~~~~iP~V~i~r~~~------~~~~ 98 (270)
T cd06294 25 GISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSREDDPIIDYLKEEKFPFVVIGKPED------DKEN 98 (270)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC------CCCC
T ss_conf 9999999859989999189969999999999982799889995798984999999976999999877568------8899
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHH
Q ss_conf 35444545678999864220127775389721567562-------014689846982567688750468999-8899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~ 163 (232)
......+....+..+.++.. ..+.+++.++.|..... -+.+.|+++|.......++........ .+....+
T Consensus 99 ~~~V~~Dn~~~~~~a~~~L~-~~Ghr~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 177 (270)
T cd06294 99 ITYVDNDNIQAGYDATEYLI-KLGHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKL 177 (270)
T ss_pred CEEEECCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 84993777999999999999-76995699981899865899999999999998699977333313776678899999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHH
Q ss_conf 2---37838998078999999971354405----8039971889999
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIAS 203 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~ 203 (232)
+ ..+++|+.++-..+....+.+...+. ++.++++...--.
T Consensus 178 l~~~~~~tai~~~nD~~A~g~~~al~~~g~~iP~disvvgfDd~~~~ 224 (270)
T cd06294 178 LEQHPRPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFNNSILS 224 (270)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
T ss_conf 84699984899877499999999999839999998499998972899
No 48
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=86.36 E-value=2.4 Score=21.39 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=65.5
Q ss_pred CCCEEEE--ECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCEEEEECC
Q ss_conf 5879998--48467999886200136300041589999764101223544454567899986422-01277753897215
Q gi|255764510|r 48 SYGAIAI--TSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQK-VLFTPQKPLIYLGG 124 (232)
Q Consensus 48 ~~d~iif--tS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~vl~~~g 124 (232)
..+.|+= +|..+.-........+.+....+.. ...+...+....+............+.... ......+++.++..
T Consensus 71 ~V~~viG~~~S~~~~a~~~~~~~~~ip~i~~~a~-~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~k~vaii~~ 149 (345)
T cd06338 71 KVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGA-SDSIFAQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYA 149 (345)
T ss_pred CCEEEECCCCHHHHHCCCHHHHHCCCEEECCCCC-CCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9539976866143200103788719666256656-822222788722673588189999999999985689868999964
Q ss_pred C-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEEC-HHHHHHHHHHCCHHHCCEEE
Q ss_conf 6-----756201468984698256768875046899988999862-3783899807-89999999713544058039
Q gi|255764510|r 125 K-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYA-RSSVLYFFSLPLPAKISAAF 194 (232)
Q Consensus 125 ~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S-~~~v~~~~~~~~~~~~~~~~ 194 (232)
+ ...+.+.+.+++.|..|.....|..... +....+..+. .++|+|++.+ +...-.|.+.+...+....+
T Consensus 150 ~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~-Df~~~l~~i~~~~pd~i~~~~~~~~~~~~~~q~~~~G~~~~~ 225 (345)
T cd06338 150 DDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTA-DLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQMKELGYNPKA 225 (345)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCC-CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 8630368999999999865974999997179876-589999999867999999907771599999999976999888
No 49
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=85.86 E-value=2.5 Score=21.24 Aligned_cols=88 Identities=14% Similarity=0.054 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEEC-H
Q ss_conf 9998642201277753897215-----6756201468984698256768875046899988999862-3783899807-8
Q gi|255764510|r 103 AKIIVEQKVLFTPQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYA-R 175 (232)
Q Consensus 103 ~~ll~~~~~~~~~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S-~ 175 (232)
...+........+.+++.++.. ......+.+.+.+.|..+.....|..-. .+....+..+. .++|+|++.+ +
T Consensus 131 ~~~~~~~~~~~~g~k~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~Df~~~~~~i~~~~pd~v~~~~~~ 209 (362)
T cd06343 131 ARIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTE-PDFDSQVAKLKAAGADVVVLATTP 209 (362)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999999998279873899647857779999999999997699688999457777-888999999985493999994784
Q ss_pred HHHHHHHHHCCHHHCC
Q ss_conf 9999999713544058
Q gi|255764510|r 176 SSVLYFFSLPLPAKIS 191 (232)
Q Consensus 176 ~~v~~~~~~~~~~~~~ 191 (232)
...-.|++.+...+.+
T Consensus 210 ~~~~~~~~q~~~~G~~ 225 (362)
T cd06343 210 KFAAQAIRKAAELGWK 225 (362)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 6899999999976999
No 50
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.32 E-value=2.7 Score=21.08 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=48.0
Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHH-HHH-CCCCEEEEECHHH-----HHHHHHHCCHHHC-CEEEEECC-
Q ss_conf 6201468984698256768875046899988999-862-3783899807899-----9999971354405-80399718-
Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMK-NLL-QNADAILFYARSS-----VLYFFSLPLPAKI-SAAFLCLS- 198 (232)
Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~-~~~-~~~d~i~f~S~~~-----v~~~~~~~~~~~~-~~~~~~ig- 198 (232)
.+.+...|+..|+.|..+-+. ..++.+. .+. .+.|+|.++|-+. ++.+.+.+.+.+. ++.+++-|
T Consensus 20 ~~iva~~l~~~GfeVi~lG~~------~~pe~~v~~A~~~~ad~igiSsl~G~~~~~~~~l~~~l~~~g~~di~vvvGG~ 93 (137)
T PRK02261 20 NKILDRALTEAGFEVINLGVM------TSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred HHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 999999999789749846887------99999999998739999997111126612799999999967999996998362
Q ss_pred --------HHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf --------8999999976996699879999889999986
Q gi|255764510|r 199 --------NNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 199 --------~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232)
+...+.++++|+..+. .+..+.+..++.|.
T Consensus 94 i~i~~~dp~~~~~~L~~~Gv~~VF-~pGT~~~~ii~~i~ 131 (137)
T PRK02261 94 LVVGKHDFEEVEKKFKEMGFDRVF-APGTDLEEVIDDLK 131 (137)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEE-CCCCCHHHHHHHHH
T ss_conf 167887839999999977979887-97889999999999
No 51
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=84.11 E-value=3 Score=20.75 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=96.5
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 9999999879829994210000078-520016447587999848467-99988620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.+...++++|++++..-.-.-.-.. .......-...|+||+.+..- -+.+......+.|+..++..... .....
T Consensus 20 ~ie~~~~~~Gy~~~i~~s~~d~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iP~V~~~~~~~~----~~~~~ 95 (268)
T cd06273 20 AFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLARRGVPYVATWNYSPD----SPYPC 95 (268)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCC----CCCCE
T ss_conf 99999998599999995899989999999999965999999918999989999999759989998465788----99978
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC--------CCHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf 3544454567899986422012777538972156756--------2014689846982567688750468999-889998
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN--------FHFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~--------~~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232)
+. .+....+..+.+.... .+.+++.++.|.... .-+.+.|+++|..+.....+........ ......
T Consensus 96 V~---~Dn~~~~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (268)
T cd06273 96 VG---FDNREAGRLAARHLIA-LGHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQ 171 (268)
T ss_pred EE---ECHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHH
T ss_conf 99---6779999999999987-2987479994687777789999999999999809998714203157898999999999
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCC
Q ss_conf 62---37838998078999999971354405----803997188999999976996
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKN 211 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~ 211 (232)
++ ..+|+|+..+-..+....+.+...+. ++.+++++..--..+-.-.+.
T Consensus 172 ~l~~~~~~~ai~~~nd~~A~g~i~~l~~~g~~iP~disvigfd~~~~~~~~~p~lT 227 (268)
T cd06273 172 LLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDDIDGSAELEPALT 227 (268)
T ss_pred HHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCE
T ss_conf 98479998489977879999999999963999999679999998288984189947
No 52
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=84.09 E-value=3 Score=20.75 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHH-HHH-CCCCEEEEECHHH-----HHHHHHHCCHHHC-CEEEEECC
Q ss_conf 56201468984698256768875046899988999-862-3783899807899-----9999971354405-80399718
Q gi|255764510|r 127 RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMK-NLL-QNADAILFYARSS-----VLYFFSLPLPAKI-SAAFLCLS 198 (232)
Q Consensus 127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~-~~~-~~~d~i~f~S~~~-----v~~~~~~~~~~~~-~~~~~~ig 198 (232)
+.+.+...|+..|+.|..+-+. ..++.+. .+. .+.|+|.++|-+. ++.+.+.+.+.+. ++.+++-|
T Consensus 15 G~~iva~~l~~~GfeVi~lG~~------~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~di~vvvGG 88 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNLGVL------SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred HHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 8999999999789729847988------9999999999873999999823202562489999999996799999899789
Q ss_pred ---------HHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf ---------8999999976996699879999889999986
Q gi|255764510|r 199 ---------NNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 199 ---------~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232)
+...+.++++|+..+.-+. .+.+..++.|.
T Consensus 89 ~i~i~~~d~~~~~~~l~~~Gv~~vF~pG-t~~~e~i~~~~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPG-TPPEEAIADLK 127 (128)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEECCC-CCHHHHHHHHH
T ss_conf 8677831048999999966968574998-79999999985
No 53
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=82.36 E-value=3.6 Score=20.33 Aligned_cols=176 Identities=15% Similarity=0.138 Sum_probs=80.8
Q ss_pred HHHHHHHCCCCEEEECCEEEECCCCCCC----------CCCCCCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 9999998798299942100000785200----------16447587999--84846799988620013630004158999
Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHDRESVF----------LAMQQSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASAC 82 (232)
Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~~~~~~----------~~~~~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~ 82 (232)
-.+.+...|. +.-.+ +++...++..+ +...+.-+.|+ ++|....-..........+.+..+.++..
T Consensus 37 Av~~iNa~Gg-i~G~~-velv~~D~~~dp~~a~~~a~~li~~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~ 114 (366)
T COG0683 37 AVEEINAAGG-ILGRK-VELVVEDDASDPATAAAVARKLITQDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQ 114 (366)
T ss_pred HHHHHHHHCC-CCCEE-EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9999875389-78806-999983389883899999999998729739998068477787699997669259994577721
Q ss_pred HHHHHCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf 976410122-3544454567899986422012777538972156-----7562014689846982567688750468999
Q gi|255764510|r 83 LARQKGFTQ-IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP 156 (232)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~ 156 (232)
+...+... ++............+..........+++.++..+ ...+.+.+.|++.|.++.....|...... .
T Consensus 115 -~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-~ 192 (366)
T COG0683 115 -LTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTD-F 192 (366)
T ss_pred -CCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-H
T ss_conf -03567787769957870367999999999737885799994798777899999999999659933234565878879-9
Q ss_pred HHHHHHHH-CCCCEEEEE-CHHHHHHHHHHCCHHHCCEEE
Q ss_conf 88999862-378389980-789999999713544058039
Q gi|255764510|r 157 ETTMKNLL-QNADAILFY-ARSSVLYFFSLPLPAKISAAF 194 (232)
Q Consensus 157 ~~~~~~~~-~~~d~i~f~-S~~~v~~~~~~~~~~~~~~~~ 194 (232)
...+..+. .++|+|++. .....-.|.+.+.+.+....+
T Consensus 193 ~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~~ 232 (366)
T COG0683 193 SALVAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKL 232 (366)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 9999998756999999878876369999999976887504
No 54
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=82.35 E-value=3.6 Score=20.33 Aligned_cols=142 Identities=11% Similarity=0.032 Sum_probs=60.9
Q ss_pred CCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 7587999--84846799988620013630004158999976410122354445456789998642201277753897215
Q gi|255764510|r 47 QSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGG 124 (232)
Q Consensus 47 ~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g 124 (232)
++.+.|+ ++|..+............+..+.+..+............+....+.......+...... ...+++.++..
T Consensus 64 d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~-~~~~~vaiv~~ 142 (336)
T cd06360 64 DKVDVVVGPVHSGEALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAAD-DGYKKVVTVAW 142 (336)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCEEEECCCHHHHHHHHHHHHHH-HCCCEEEEECC
T ss_conf 99638855767076553339998509534312555532412578776687059859999999999998-48986999468
Q ss_pred -----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEE-CHHHHHHHHHHCCHHHC
Q ss_conf -----6756201468984698256768875046899988999862-378389980-78999999971354405
Q gi|255764510|r 125 -----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFY-ARSSVLYFFSLPLPAKI 190 (232)
Q Consensus 125 -----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~-S~~~v~~~~~~~~~~~~ 190 (232)
....+.+.+.+.+.|..|....-|..- ..+....+..+. .++|+|+.. .+.....|++.+...+.
T Consensus 143 d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~Df~~~i~~~~~~~pd~v~~~~~~~~~~~~~~q~~~~G~ 214 (336)
T cd06360 143 DYAFGYEVVEGFKEAFTEAGGKIVKELWVPFG-TSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQYDAAGL 214 (336)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 74466999999999999739969999965899-8567999999987698999993566048999999997399
No 55
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=82.17 E-value=3.6 Score=20.29 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCCCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEEC-H
Q ss_conf 99986422012777538972156-----75620146898469825676887504689998899986-23783899807-8
Q gi|255764510|r 103 AKIIVEQKVLFTPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYA-R 175 (232)
Q Consensus 103 ~~ll~~~~~~~~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S-~ 175 (232)
...+........+.+++.++..+ ...+.+.+.+.+.|+.+....-|..-.. +....+..+ ..++|+|++.. .
T Consensus 125 ~~~~~~~~~~~~~~kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~-Df~~~l~~i~~~~pD~V~~~~~~ 203 (347)
T cd06335 125 APFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDK-DMTAQLLRAKAAGADAIIIVGNG 203 (347)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-CHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999984588669999707636689999999999865986757884079983-48999999986699999994776
Q ss_pred HHHHHHHHHCCHHHCCEEEE
Q ss_conf 99999997135440580399
Q gi|255764510|r 176 SSVLYFFSLPLPAKISAAFL 195 (232)
Q Consensus 176 ~~v~~~~~~~~~~~~~~~~~ 195 (232)
...-.|++.+...+.+..++
T Consensus 204 ~~~~~~~~q~~~~G~~~~~~ 223 (347)
T cd06335 204 PEGAQIANGMAKLGWKVPII 223 (347)
T ss_pred HHHHHHHHHHHHCCCCCCEE
T ss_conf 17999999999719997679
No 56
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=82.12 E-value=3.6 Score=20.27 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHH-----HHHHHCCHHHCCEEEEE-
Q ss_conf 56756201468984698256768875046899988999862-378389980789999-----99971354405803997-
Q gi|255764510|r 124 GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVL-----YFFSLPLPAKISAAFLC- 196 (232)
Q Consensus 124 g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~-----~~~~~~~~~~~~~~~~~- 196 (232)
.+.+...+.+.|+..|+.|......++. .+..+.+. +..|+|.++|-+..- .+.+.+.+.+.+-..+.
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~~tp-----~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~ 99 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLFQTP-----EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVV 99 (143)
T ss_pred CCCCHHHHHHHHHHCCCEEEECCCCCCH-----HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 4313199999998579379815875899-----99999998647988999734404789999999999981975548865
Q ss_pred ---CCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf ---1889999999769966998799998899999861
Q gi|255764510|r 197 ---LSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 197 ---ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
|.+-....+++.|...+.-+.+|-.+.+-..+.+
T Consensus 100 GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 100 GGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf 6866813679999818665468999899999999999
No 57
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=80.77 E-value=4.1 Score=19.99 Aligned_cols=144 Identities=10% Similarity=-0.004 Sum_probs=69.8
Q ss_pred CCCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 47587999--8484679998862001363000415899997641012235444545678999864220127775389721
Q gi|255764510|r 46 QQSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLG 123 (232)
Q Consensus 46 ~~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~ 123 (232)
..+.+.|+ ++|..+............+....+..+.....+......+....+.......+...... ...+++.++.
T Consensus 64 ~~~V~aviG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~lt~~~~~~y~Fr~~~~~~~~~~~~~~~~~~-~~~kkva~i~ 142 (334)
T cd06327 64 RDGVDMIVGGPNSAVALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVK-AGGKKWFFLT 142 (334)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH-CCCCEEEEEE
T ss_conf 579714317878188898899999829756503776643356567872798448859999999999997-0798799995
Q ss_pred CC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEEC-HHHHHHHHHHCCHHHCC
Q ss_conf 56-----75620146898469825676887504689998899986-23783899807-89999999713544058
Q gi|255764510|r 124 GK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYA-RSSVLYFFSLPLPAKIS 191 (232)
Q Consensus 124 g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S-~~~v~~~~~~~~~~~~~ 191 (232)
.+ .....+.+.+++.|..+....-|..-. .+....+..+ ..++|+|++.+ +...-.|++.+.+.+..
T Consensus 143 ~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~Dfs~~l~~i~~~~pD~v~~~~~~~~~~~~~~q~~~~G~~ 216 (334)
T cd06327 143 ADYAFGHSLERDARKVVKANGGKVVGSVRHPLGT-SDFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEFGLT 216 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 3745669999999999996598799999628997-5568999887755999999916654799999999974998
No 58
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=80.19 E-value=4.3 Score=19.87 Aligned_cols=181 Identities=12% Similarity=0.073 Sum_probs=97.5
Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 69999999987982999421000007852001644758799984846-79998862001363000415899997641012
Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
...+...+.++|++++....-. .....-.........|+||+.+.. .-..+......+.|+..++.... .....
T Consensus 29 ~~gie~~~~~~gY~~li~~~~~-~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~d~~~~----~~~~~ 103 (275)
T cd06295 29 LGGIADALAERGYDLLLSFVSS-PDRDWLARYLASGRADGVILIGQHDQDPLPERLAETGLPFVVWGRPLP----GQPYC 103 (275)
T ss_pred HHHHHHHHHHCCCEEEEEECCC-CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCC
T ss_conf 9999999998599899994898-689999999984899889997998997999999957999999986268----99997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH
Q ss_conf 235444545678999864220127775389721567562-------0146898469825676887504689998-89998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232)
.+.. + ....+..+.++... .+.+++.|+.+..... -+.+.+.++|..+....+|......... ..+..
T Consensus 104 ~V~~--d-~~~a~~~~~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (275)
T cd06295 104 YVGS--D-NVGGGRLATEHLLA-RGRRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEESGRAAMRA 179 (275)
T ss_pred EEEE--C-HHHHHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 8982--8-79999999999998-099879870588667269999999999999869999941799657766879999888
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH
Q ss_conf 62---37838998078999999971354405----80399718899
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI 201 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t 201 (232)
++ .++++|+.++-..+...+..+...+. ++.+++++..-
T Consensus 180 ~l~~~~~~~ai~~~nD~~A~g~~~~~~~~g~~iP~disIigfd~~~ 225 (275)
T cd06295 180 LLERGPDFDAVFAASDLMALGALRALREAGRRVPEDVAVVGFDDIP 225 (275)
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 9854999870341475878999999997499989856999967868
No 59
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.72 E-value=4.4 Score=19.78 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=94.0
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH------HHHHHHHHHCCCCCEECCCHHHHHHHHH
Q ss_conf 9999999879829994210000078-52001644758799984846------7999886200136300041589999764
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE------SLSTLPANFCRHTPIFAIGEASACLARQ 86 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~------av~~~~~~~~~~~~~~~vg~~t~~~~~~ 86 (232)
.+.+.+.++|+.++.+..-.-.... .......-...|++|++|.. ..+.+......+.|+..+...... .
T Consensus 20 gie~~~~~~Gy~~li~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~d~~~~~---~ 96 (273)
T cd06292 20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGRAPP---P 96 (273)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC---C
T ss_conf 9999999869989999789997999999999996499849992476663315789999999669988999335799---8
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCHH-
Q ss_conf 101223544454567899986422012777538972156756-------201468984698256768875046899988-
Q gi|255764510|r 87 KGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPET- 158 (232)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~- 158 (232)
.....+. .+....++.+.++... .+.+++.++.+.... .-+.+.+++.|.......++..........
T Consensus 97 ~~~~~V~---~Dn~~a~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~G~~~a~~~~~~~~~~~~i~~~~~~~~~~~~ 172 (273)
T cd06292 97 LKVPHVS---TDDALAMRLAVRHLVA-LGHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEGGQA 172 (273)
T ss_pred CCCCEEE---ECHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
T ss_conf 8874899---6889999999999998-59980899517877715999999999999984999771489716777788999
Q ss_pred HHHHHH-CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH
Q ss_conf 999862-37838998078999999971354405----80399718899
Q gi|255764510|r 159 TMKNLL-QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI 201 (232)
Q Consensus 159 ~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t 201 (232)
....++ .++|+|+..+-..+-.+.+.+...+. ++.++++...-
T Consensus 173 ~~~~~l~~~~~ai~~~nD~~A~g~~~~l~~~g~~ip~di~VigfD~~~ 220 (273)
T cd06292 173 AAVELLGSGPTAIVAASDLMALGAIRAARRRGLRVPEDVSVVGYDDSA 220 (273)
T ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 999997479965774585999999999998399899965999999858
No 60
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=79.43 E-value=4.5 Score=19.72 Aligned_cols=129 Identities=12% Similarity=0.130 Sum_probs=72.6
Q ss_pred CCCEEEEECHHHH-HHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHH-----HHCCCCCCEEE
Q ss_conf 5879998484679-9988620013630004158999976410122354445456789-998642-----20127775389
Q gi|255764510|r 48 SYGAIAITSSESL-STLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLA-KIIVEQ-----KVLFTPQKPLI 120 (232)
Q Consensus 48 ~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~-----~~~~~~~~~vl 120 (232)
+.+|.-|+|...+ +++ ......+..+|....-.....|............... .+++.. .....++++|.
T Consensus 57 kV~w~~F~~G~~~~eAl---~aG~iD~~~~g~~p~i~a~a~G~~~~~va~~~~~~~~~~i~V~~~S~I~s~aDLkGKkVa 133 (314)
T PRK11553 57 KISWVEFPAGPQMLEAL---NVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVA 133 (314)
T ss_pred CEEEEECCCCHHHHHHH---HCCCCCEEEECCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCEEE
T ss_conf 35899789748999999---769975451158589999866998699998637886418998489877888893899897
Q ss_pred EECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEECHHHHHHHHH
Q ss_conf 7215675620146898469825676887504689998899986-23783899807899999997
Q gi|255764510|r 121 YLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYARSSVLYFFS 183 (232)
Q Consensus 121 ~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S~~~v~~~~~ 183 (232)
+.+|......|...|++.|...+.+..=.+.+ .+....+ .+.+|++...-|.......+
T Consensus 134 ~~~Gs~~~~~l~~aL~~aGL~~~DV~~v~l~p----~d~~aAl~~G~VDA~~~w~P~~~~a~~~ 193 (314)
T PRK11553 134 FQKGSSSHNLLLRALRQAGLKFTDIQPTYLTP----ADARAAFQQGNVDAWAIWDPYYSAALLQ 193 (314)
T ss_pred EECCCHHHHHHHHHHHHCCCCHHHEEEEECCC----HHHHHHHHCCCCCEEEECCHHHHHHHHC
T ss_conf 41797379999999998699889918984593----8899999669978899756789999862
No 61
>PRK06436 glycerate dehydrogenase; Provisional
Probab=79.17 E-value=4.6 Score=19.67 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=40.6
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCC----CHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 777538972156756201468984698256768875046899----988999862378389980789999
Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY----PETTMKNLLQNADAILFYARSSVL 179 (232)
Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~----~~~~~~~~~~~~d~i~f~S~~~v~ 179 (232)
..++++.++.-......+.+.++..|..|. .|.+..... ....+.+++.+.|+|++.-|.+-+
T Consensus 120 L~gktvGIiG~G~IG~~vA~~~~afg~~V~---~~~r~~~~~~~~~~~~~~~ell~~sDivslh~Plt~~ 186 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFGMNIY---AYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDE 186 (303)
T ss_pred ECCCEEEEECCCHHHHHHHHHHHHCCCEEE---EECCCCCCCCCCEEECCHHHHHHHCCEEEEECCCCHH
T ss_conf 118889998976569999999997798899---9898532245745526899999759999992578655
No 62
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.08 E-value=4.6 Score=19.66 Aligned_cols=181 Identities=12% Similarity=0.040 Sum_probs=93.1
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999998798299942100000785-2001644758799984846799-988620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.+...+.++|+.++..-.-.-..... ......-...|+||+.+...-. .+......+.|+..++...... .....
T Consensus 20 gi~~~~~~~gy~~ll~~~~~~~~~e~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~id~~~~~~---~~~~~ 96 (270)
T cd06296 20 GVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTSAQRAALRRTGIPFVVVDPAGDPD---ADVPS 96 (270)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC---CCCCE
T ss_conf 999999984998999979999699999999999549999999068899999999997499999987888888---89868
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHH
Q ss_conf 354445456789998642201277753897215675620-------14689846982567688750468999-8899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~ 163 (232)
+.. . ....+..+.+... ..+.+++.++.|...... +.+.++.+|..+....++........ ......+
T Consensus 97 V~~--D-n~~a~~~a~~~L~-~~G~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 172 (270)
T cd06296 97 VGA--T-NWAGGLAATEHLL-ELGHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGDFSTESGFRAAAEL 172 (270)
T ss_pred EEE--C-HHHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCHHHHHHHHHHHH
T ss_conf 995--7-6999999999999-85897288845998865599999999999998699988555330650178999999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH
Q ss_conf 2---37838998078999999971354405----80399718899
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI 201 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t 201 (232)
+ .++|+|+.++-..+-.+++.+...+. ++.++++...-
T Consensus 173 l~~~~~~~aii~~~D~~A~g~~~~l~~~gi~vP~di~iigfd~~~ 217 (270)
T cd06296 173 LALPERPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDLP 217 (270)
T ss_pred HHCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHH
T ss_conf 954998862034786899999999998699999988799978878
No 63
>PRK05723 flavodoxin; Provisional
Probab=78.86 E-value=4.4 Score=19.79 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=33.0
Q ss_pred CEEEEECC------HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH
Q ss_conf 93898589------688699999999879829994210000078520016447587999848467
Q gi|255764510|r 1 MYIVITRP------IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES 59 (232)
Q Consensus 1 M~ilitRp------~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a 59 (232)
|||.|.-- +.-|.++++.|+..|+++.+.+..++.... ....-.++|+||-.|
T Consensus 1 Mki~IlygS~tGnAe~vA~~~~~~l~~~g~~~~~~~~~~~~~~~------~~~~~~~livtST~G 59 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLL------AFAPEALLAVTSTTG 59 (151)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH------CCCCCCEEEEECCCC
T ss_conf 97999997683489999999999999759952641555443564------368882899986789
No 64
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=78.79 E-value=4.3 Score=19.81 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=35.9
Q ss_pred CEEEEEC------CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf 9389858------96886999999998798299942100000785200164475879998484
Q gi|255764510|r 1 MYIVITR------PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232)
Q Consensus 1 M~ilitR------p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232)
||+||.- ..+=+..++..|.+.|+++-..|+-.... ..+.+||.+|+-++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~-------~~l~~ydavVIgAs 56 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEE-------PALEDYDAVVIGAS 56 (175)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHC-------CCHHHCCEEEEECC
T ss_conf 916999834777589999999997554177056536565402-------68411756998241
No 65
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.74 E-value=4.7 Score=19.59 Aligned_cols=180 Identities=9% Similarity=0.078 Sum_probs=96.1
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999998798299942100000785-200164475879998484679-9988620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.+...+.++|++.+.+-.-.-..... ......-...|+||+++...- +.+........|+..++..... .....
T Consensus 20 ~i~~~~~~~GY~~il~~s~~~~~~e~~~i~~l~~~~vdGiIl~~~~~~~~~~~~~~~~~~PvV~i~~~~~~----~~~~~ 95 (269)
T cd06293 20 AVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLINSYGNIVLVDEDVPG----AKVPK 95 (269)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCC----CCCCE
T ss_conf 99999998699899997899989999999999846999999806889979999999659999999577888----99988
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHH
Q ss_conf 3544454567899986422012777538972156756-------201468984698256768875046899988-99986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~ 163 (232)
+.. +....+.++.++.. ..+.+++.++++.... .-+.+.++++|.......+|.......... .....
T Consensus 96 V~~---Dn~~~~~~~~~~L~-~~G~~~I~~i~~~~~~~~~~~R~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (269)
T cd06293 96 VFC---DNEQGGRLATRHLA-RAGHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGDYTREFGRAAAAQL 171 (269)
T ss_pred EEE---CHHHHHHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 997---67999999999999-82998389954887763399999999999997699999348995563113599999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH
Q ss_conf 2---37838998078999999971354405----80399718899
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI 201 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t 201 (232)
+ .++++|+..+-..+-.+++.+...+. ++.+++++..-
T Consensus 172 l~~~~~~~av~~~nD~~A~g~l~~l~~~gi~vP~disiigfd~~~ 216 (269)
T cd06293 172 LARGDPPTAIFAASDEIAIGLLEVLRERGLSIPGDMSLVGFDDVG 216 (269)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 847999858996885999999999998499999965999888809
No 66
>KOG2836 consensus
Probab=78.53 E-value=3.3 Score=20.50 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=40.6
Q ss_pred CEEEEE-CCHH-HHHHHHHHHHHCCCCEEE---ECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH
Q ss_conf 938985-8968-869999999987982999---4210000078520016447587999848467999886
Q gi|255764510|r 1 MYIVIT-RPIK-KALRTQEKIQKMGYIPVM---MPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPA 65 (232)
Q Consensus 1 M~ilit-Rp~~-~a~~~~~~L~~~G~~~i~---~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~ 65 (232)
||.||| ||.. .-..++..|+++|...+. -|+.+..++...-.......||-=.++++..|+-.+.
T Consensus 17 MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~ 86 (173)
T KOG2836 17 MRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLS 86 (173)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 2799855987114999999999639728999514646765244458257633665699990788899999
No 67
>PRK09271 flavodoxin; Provisional
Probab=78.24 E-value=4.9 Score=19.50 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=33.6
Q ss_pred CEEEEEC------CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 9389858------9688699999999879829994210000078520016447587999848
Q gi|255764510|r 1 MYIVITR------PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232)
Q Consensus 1 M~ilitR------p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232)
|||+|.- .+.-|...+..|++.|.+|-..-+ +..... .....+.+||.+++-|
T Consensus 1 MKvlIvYaS~TGNTE~vA~~I~~~l~~~G~eV~~~e~-d~~~~~--~~~~d~~~yDl~llG~ 59 (160)
T PRK09271 1 MRILLAYASLSGNTREVARMIAARCEEAGHAVTWVET-DLQTLA--QAPLDPEEYDLFLLGT 59 (160)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE-CCHHHH--HCCCCCCCCCEEEEEC
T ss_conf 9189999848876899999999999976982379870-102322--0335611188899965
No 68
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=78.04 E-value=5 Score=19.47 Aligned_cols=183 Identities=12% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHH--HHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 999999987982999421000007-85200164475879998484679--998862001363000415899997641012
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESL--STLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av--~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
.+...+.+.|++++.+..-.-... ..-.....-...|++|+.+...- .........+.|+..++.... .....
T Consensus 20 gi~~~~~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~~~~~~iPvV~id~~~~----~~~~~ 95 (269)
T cd06275 20 GVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPE----DDFAD 95 (269)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCC----CCCCC
T ss_conf 99999998699899996899989999999999956999999936889837899999828998899846788----89998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH
Q ss_conf 2354445456789998642201277753897215675620-------146898469825676887504689998-89998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232)
.+. .+....+.++.++... .+.+++.++.|...... +.+.|.++|..+...-++......... ..+..
T Consensus 96 ~V~---~D~~~~~~~a~~~Li~-~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~i~~~~~~i~~~~~~~~~~~~~~~~ 171 (269)
T cd06275 96 KIQ---DNSEEGGYLATRHLIE-LGHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEGGYEAMQR 171 (269)
T ss_pred EEE---ECHHHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf 999---7899999999999998-299717755699777169999999999999859997655503677776889999999
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHH
Q ss_conf 62---37838998078999999971354405----80399718899999
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASA 204 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~ 204 (232)
++ ..+++|+.++-..+..+.+.+...+. ++.++|+...-...
T Consensus 172 ~l~~~~~~~aii~~~d~~A~g~~~~l~~~gi~vP~di~vvgfd~~~~~~ 220 (269)
T cd06275 172 LLAQPKRPTAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYDDIELAR 220 (269)
T ss_pred HHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
T ss_conf 9970899661231874999999999998088789986799877879998
No 69
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.49 E-value=5.2 Score=19.37 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=88.4
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf 99999998798299942100000785200164475879998484679-99886200136300041589999764101223
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232)
...+.++++|++++.+..-.-...........-...|++|+++..-- +........+.|+..++.... ......+
T Consensus 20 gie~~~~~~gy~~ll~~~~~~~~~e~~l~~l~~~~vDGiIi~~~~~~~~~~~~~~~~~iPvV~i~~~~~----~~~~~~V 95 (266)
T cd06278 20 ALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSSELAEECRRNGIPVVLINRYVD----GPGVDAV 95 (266)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCEE
T ss_conf 999999986999999979998899999999995599999994898999999999976998999787689----9999899
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCC-CCHHHHHHHH
Q ss_conf 54445456789998642201277753897215675620-------146898469825676887504689-9988999862
Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIA-YPETTMKNLL 164 (232)
Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~-~~~~~~~~~~ 164 (232)
.. +....+..+.++.. ..+.+++.++.|...... +.+.|.++|..... ++...... .-.+....++
T Consensus 96 ~~---Dn~~~~~~a~~~L~-~~Gh~~I~~i~~~~~~~~~~~R~~G~~~al~~~gl~~~~--~~~~~~~~~~g~~~~~~ll 169 (266)
T cd06278 96 CS---DNYEAGRLAAELLL-AKGCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVV--EEAGDYSYEGGYEAARRLL 169 (266)
T ss_pred EE---CHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE--EECCCCCHHHHHHHHHHHH
T ss_conf 97---78999999999999-809988999968888814999999999999986999438--9818999899999999998
Q ss_pred ---CCCCEEEEECHHHHHHHHHHCC-HHHC----CEEEEECCHHH
Q ss_conf ---3783899807899999997135-4405----80399718899
Q gi|255764510|r 165 ---QNADAILFYARSSVLYFFSLPL-PAKI----SAAFLCLSNNI 201 (232)
Q Consensus 165 ---~~~d~i~f~S~~~v~~~~~~~~-~~~~----~~~~~~ig~~t 201 (232)
.++++|+.++-..+-..++.+. ..+. ++.++++...-
T Consensus 170 ~~~~~ptAi~~~nD~~A~g~l~~l~~~~g~~vP~disvvgfD~~~ 214 (266)
T cd06278 170 ASRPRPDAIFCANDLLAIGVMDAARQEGGLRVPEDVSVIGFDDIP 214 (266)
T ss_pred HCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 459998862507789999999999973588888866999878808
No 70
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=77.06 E-value=5.3 Score=19.30 Aligned_cols=184 Identities=9% Similarity=0.063 Sum_probs=96.2
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHHHHHHHH-HCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999998798299942100000785-200164475879998484679998862-0013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESLSTLPAN-FCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av~~~~~~-~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.+...++++|++++....-.-..... -.....-...|++|+.+...-...... .....|+..++.... ......
T Consensus 20 gie~~~~~~gy~~li~~s~~~~~~e~~~i~~l~~~~vDGiI~~~~~~~~~~~~~l~~~~~PvV~i~~~~~----~~~~~~ 95 (268)
T cd06298 20 GIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEFKRSPTPVVLAGSVDE----DNELPS 95 (268)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE
T ss_conf 9999999879989999899998999999999996699999982677999999999966998999577578----999878
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH
Q ss_conf 35444545678999864220127775389721567562--------0146898469825676887504689998-89998
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232)
+.. +.........++.. ..+..++.++.|..... -+.+.+.++|..+....++......... .....
T Consensus 96 V~~---Dn~~~~~~a~~~L~-~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~~~~~~~~~~~~~~~ 171 (268)
T cd06298 96 VNI---DYKKAAFEATELLI-KNGHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEE 171 (268)
T ss_pred EEE---CHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCCHHHHHHHHHHHH
T ss_conf 984---88999999999999-72996699996787776259999999999999849997601200354037789999999
Q ss_pred HH--CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHH
Q ss_conf 62--37838998078999999971354405----803997188999999
Q gi|255764510|r 163 LL--QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAI 205 (232)
Q Consensus 163 ~~--~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232)
++ .++++|+.++-..+..+++.+...+. ++.++++...-....
T Consensus 172 l~~~~~~~ai~~~nD~~A~g~l~~l~~~g~~vP~disvigfDd~~~a~~ 220 (268)
T cd06298 172 LLEDGKPTAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFNNTKLASM 220 (268)
T ss_pred HHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHC
T ss_conf 9836999789966879999999999974999998749999788189971
No 71
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=76.88 E-value=5.4 Score=19.27 Aligned_cols=80 Identities=9% Similarity=-0.062 Sum_probs=46.8
Q ss_pred CCCEEEEEC-----CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHHHCCH
Q ss_conf 775389721-----5675620146898469825676887504689998899986-2378389980-78999999971354
Q gi|255764510|r 115 PQKPLIYLG-----GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFSLPLP 187 (232)
Q Consensus 115 ~~~~vl~~~-----g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~~~~~ 187 (232)
..+++.++. |....+.+.+.+++.|..|.....|..-.. +....+..+ ..++|+|++. .+.....+++.+..
T Consensus 136 g~kkvail~~~~~yG~~~~~~~~~~~~~~G~~vv~~~~~~~~~~-Dfs~~l~ki~~~~pD~v~~~~~~~~~~~~~kq~~~ 214 (312)
T cd06346 136 GYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKS-SYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYE 214 (312)
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 99648999957726699999999999987998999996699984-55999999986699999994673479999999997
Q ss_pred HHCCEEEE
Q ss_conf 40580399
Q gi|255764510|r 188 AKISAAFL 195 (232)
Q Consensus 188 ~~~~~~~~ 195 (232)
.+....++
T Consensus 215 ~G~~~~~~ 222 (312)
T cd06346 215 QGLFDKFL 222 (312)
T ss_pred CCCCCCEE
T ss_conf 59999779
No 72
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=76.15 E-value=5.6 Score=19.15 Aligned_cols=185 Identities=13% Similarity=0.081 Sum_probs=97.2
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCC-CCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 99999999879829994210000078520-0164475879998484679-998862001363000415899997641012
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESV-FLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
......++++|++.+....-.-....... ....-...|+||+++...- ..+......+.|+..++... ......
T Consensus 23 ~gie~~~~~~Gy~lll~~~~~~~~~~~~~~~~l~~~~vDGiIl~~~~~~~~~~~~l~~~~iP~V~~~r~~----~~~~~~ 98 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDDPRVALLLERGFPFVTHGRTE----LGDPHP 98 (268)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCC
T ss_conf 9999999984998999958999899999999998489888999678898199999997799999976656----899996
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH
Q ss_conf 235444545678999864220127775389721567562-------0146898469825676887504689998-89998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232)
.+.. +....+..+.++.. ..+.+++.++.|..... -+.+.|+++|..+....++......... +....
T Consensus 99 ~V~~---Dn~~~~~~a~~~L~-~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 174 (268)
T cd06271 99 WVDF---DNEAAAYQAVRRLI-ALGHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMTEEGGYAAAAE 174 (268)
T ss_pred EEEE---CHHHHHHHHHHHHH-HHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 8995---76999999999999-8598748754887546079999999999999839997711365068757779999999
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHH
Q ss_conf 62---37838998078999999971354405----803997188999999
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAI 205 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232)
++ ..+++|+.++-..+...++.+...+. ++.++++...--...
T Consensus 175 ll~~~~~p~Ai~~~nD~~A~g~l~~l~~~g~~vP~DisvigfD~~~~~~~ 224 (268)
T cd06271 175 LLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDSPPLLF 224 (268)
T ss_pred HHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
T ss_conf 99659998689977779999999999982999899979999788289982
No 73
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=75.67 E-value=5.8 Score=19.07 Aligned_cols=96 Identities=3% Similarity=-0.120 Sum_probs=58.6
Q ss_pred CCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEE-CHHHHHHHHHHCC
Q ss_conf 27775389721567-----56201468984698256768875046899988999862378389980-7899999997135
Q gi|255764510|r 113 FTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFY-ARSSVLYFFSLPL 186 (232)
Q Consensus 113 ~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~-S~~~v~~~~~~~~ 186 (232)
..+.+++.++..+. ..+.+.+.+++.|++|.....|..-..+......+....++|+|++. .+...-.|++.+.
T Consensus 137 ~~~~kkva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~~~~~~~~~~kqa~ 216 (351)
T cd06334 137 KLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAK 216 (351)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 24887899995686276899999999999769979888806999835899999999769899999377378999999999
Q ss_pred HHHCCEEEE----ECCHHHHHHHHHC
Q ss_conf 440580399----7188999999976
Q gi|255764510|r 187 PAKISAAFL----CLSNNIASAIPAS 208 (232)
Q Consensus 187 ~~~~~~~~~----~ig~~tA~~~~~~ 208 (232)
..+.+..++ +.++...+.+.+.
T Consensus 217 ~~G~~~~~ig~~~~~~~~~~~~aG~a 242 (351)
T cd06334 217 RVGLDDKFIGNWWSGDEEDVKPAGDA 242 (351)
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 75999857975167889999972111
No 74
>pfam07090 DUF1355 Protein of unknown function (DUF1355). This family consists of several hypothetical bacterial proteins of around 250 residues in length. The function of this family is unknown.
Probab=75.18 E-value=3.3 Score=20.50 Aligned_cols=48 Identities=19% Similarity=0.030 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 9688699999999879829994210000078520016447587999848
Q gi|255764510|r 8 PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232)
Q Consensus 8 p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232)
-++.++.+...|++.|+++-++|.-+ .+...+.....++.||.||+.-
T Consensus 27 ~~~ga~~~~~al~~~~~~v~~mp~h~-a~~~FP~t~eeL~~YD~VILSD 74 (183)
T pfam07090 27 YDEGADLLLFAILRSPYDVDYMPAHD-AQIAFPVTLEELSAYDAVILSD 74 (183)
T ss_pred HHCCHHHHHHHHHHCCCEEEEECCCC-CHHHCCCCHHHHHCCCEEEEEE
T ss_conf 00487999999986795189742310-4645773888884088899950
No 75
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=74.91 E-value=6.1 Score=18.95 Aligned_cols=187 Identities=10% Similarity=0.050 Sum_probs=95.5
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHH--HHHHHHHHCCCCCEECCCHHHHHHHHHHCC
Q ss_conf 9999999987982999421000007-8520016447587999848467--999886200136300041589999764101
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSES--LSTLPANFCRHTPIFAIGEASACLARQKGF 89 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~a--v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232)
..+...++++|++++....-.-... ........-...|++|+++... -..+........|+..++.... ...
T Consensus 19 ~gie~~~~~~Gy~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~-----~~~ 93 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDPQ-----PGR 93 (266)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC-----CCC
T ss_conf 999999998799899997999979999999999965998799963787755999999855997899950478-----999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCC-CHHHH
Q ss_conf 2235444545678999864220127775389721567562--------01468984698256768875046899-98899
Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAY-PETTM 160 (232)
Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~-~~~~~ 160 (232)
..+.. +.......+.++... .+.+++.++.|..... -+.+.+..+|..... .|....... ..+..
T Consensus 94 ~~V~~---Dn~~~~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 167 (266)
T cd06282 94 PSVSV---DNRAAARDVAQALAA-LGHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLP--PVEIPFNTAALPSAL 167 (266)
T ss_pred CEEEE---CHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC--EEEECCCHHHHHHHH
T ss_conf 98998---879999999999997-399569999777888868999999999999986999761--799348726899999
Q ss_pred HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCC
Q ss_conf 9862---37838998078999999971354405----80399718899999997699
Q gi|255764510|r 161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYK 210 (232)
Q Consensus 161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~ 210 (232)
..++ ..+|+|+.++-..+-.+++.+...+. ++.++++...-....-.-.+
T Consensus 168 ~~~l~~~~~~~ai~~~nD~~A~g~l~al~~~g~~vP~disIigfd~~~~~~~~~P~l 224 (266)
T cd06282 168 LALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGIAIGRLLTPPL 224 (266)
T ss_pred HHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCCC
T ss_conf 999837999847985388899999999998499999984999989708997079996
No 76
>PRK06487 glycerate dehydrogenase; Provisional
Probab=72.25 E-value=7 Score=18.56 Aligned_cols=168 Identities=13% Similarity=-0.014 Sum_probs=82.5
Q ss_pred CEEEEECCH--HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE--C
Q ss_conf 938985896--886999999998798299942100000785200164475879998484679-99886200136300--0
Q gi|255764510|r 1 MYIVITRPI--KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF--A 75 (232)
Q Consensus 1 M~ilitRp~--~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~--~ 75 (232)
|||++..-. ..++-.-..|++.+.++......+. +.....+.++|.+ +++..-+ +-+.....+-.-+. .
T Consensus 1 mk~v~ld~~~~~~~~~~~~~l~~~~~~~~~~~~t~~-----~el~~~~~dadi~-i~~~~~i~~~~l~~ap~LK~I~~~g 74 (317)
T PRK06487 1 MRAVFLDHGSLDLGDLDLSPLEQAFDELQLHAATRP-----EQVAERLQGAQVA-ISNKVALDAAALAAAPQLKLILVAA 74 (317)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCH-----HHHHHHHCCCCEE-EECCCCCCHHHHHCCCCCEEEEECC
T ss_conf 959995744488777795999852995799569998-----9999984899199-9689712899993499981998888
Q ss_pred CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------HH------------CCCCCCEEEEE
Q ss_conf 4158--999976410122354445456789998642-------------------20------------12777538972
Q gi|255764510|r 76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------KV------------LFTPQKPLIYL 122 (232)
Q Consensus 76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~~------------~~~~~~~vl~~ 122 (232)
+|-. -.+++.+.|......+...+...++...-. +. ....++++.++
T Consensus 75 ~G~d~ID~~aa~~~gI~V~n~pg~~~~~VAE~~l~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~eL~gktvGIi 154 (317)
T PRK06487 75 TGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLL 154 (317)
T ss_pred CCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEE
T ss_conf 36322069999978998997898683799999999999998545899999982843336555534776543059789997
Q ss_pred CCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCC--HHHHHHHHCCCCEEEEECHHH
Q ss_conf 1567562014689846982567688750468999--889998623783899807899
Q gi|255764510|r 123 GGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP--ETTMKNLLQNADAILFYARSS 177 (232)
Q Consensus 123 ~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~i~f~S~~~ 177 (232)
.-......+.+.++..|.+|. +|.....+.. ...+.+++...|+|++.-|.+
T Consensus 155 G~G~IG~~va~~~~~fg~~V~---~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt 208 (317)
T PRK06487 155 GHGELGGAVARLAEAFGMRVL---IGQLPGRPARPDRLPLDELLPQVDALTLHCPLT 208 (317)
T ss_pred CCCHHHHHHHHHHHHCCCEEE---EEECCCCCCCCCCCCHHHHHHHCCEEEEECCCC
T ss_conf 867689999999974899999---992888864245057999987388568733576
No 77
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=71.94 E-value=6.1 Score=18.94 Aligned_cols=19 Identities=21% Similarity=-0.078 Sum_probs=9.3
Q ss_pred HHHHHHHHCCCCEEEECCC
Q ss_conf 9999999769966998799
Q gi|255764510|r 200 NIASAIPASYKNVVTVACF 218 (232)
Q Consensus 200 ~tA~~~~~~g~~~~~va~~ 218 (232)
..|-.+++.+.....++++
T Consensus 212 ~lA~~A~e~~~Pf~v~aes 230 (301)
T COG1184 212 PLALAARELRVPFYVVAES 230 (301)
T ss_pred HHHHHHHHHCCCEEEEEEE
T ss_conf 9999999839988998543
No 78
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=71.62 E-value=7.3 Score=18.47 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=56.5
Q ss_pred CCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH---CCCCEEEEECHHHHHH
Q ss_conf 127775389721567562-------014689846982567688750468999-88999862---3783899807899999
Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNLL---QNADAILFYARSSVLY 180 (232)
Q Consensus 112 ~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~~---~~~d~i~f~S~~~v~~ 180 (232)
...+..++.++.|..... -+.+.|+++|..+....++........ .+....++ ..+++|+..+-..+-.
T Consensus 180 ~~~Ghr~I~~i~~~~~~~~~~~R~~G~~~al~~~gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~ptAi~~~nD~~A~g 259 (341)
T PRK11041 180 YELGHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKAMQQLLELPQPPTAVFCHSDVMALG 259 (341)
T ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
T ss_conf 97499769999689877689999999999999869999910489546767999999999995599985798767799999
Q ss_pred HHHHCCHHHC----CEEEEECCHHHHHHH
Q ss_conf 9971354405----803997188999999
Q gi|255764510|r 181 FFSLPLPAKI----SAAFLCLSNNIASAI 205 (232)
Q Consensus 181 ~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232)
+++.+...+. ++.++.+...-....
T Consensus 260 ~l~al~~~Gl~VP~DisViGfdd~~~~~~ 288 (341)
T PRK11041 260 ALSQAKRQGLKVPQDLSIIGFDNIDLAQF 288 (341)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCHHHHHC
T ss_conf 99999971898999659999888389852
No 79
>pfam04016 DUF364 Domain of unknown function (DUF364). Archaeal domain of unknown function.
Probab=71.34 E-value=7.4 Score=18.44 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=81.4
Q ss_pred ECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 00415899997641012235444545678999864220127775389721567562014689846982567688750468
Q gi|255764510|r 74 FAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDI 153 (232)
Q Consensus 74 ~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~ 153 (232)
.++|-++..++............... +..+. ....++++|.++..- . -+.+.|++.| .++.++++.+.
T Consensus 75 rslglAaiNAl~~~~~~~~~~~~~~~-d~~d~-----~~~~~~~kV~vVG~f--~-P~~~~l~~~~---~~~~V~Er~~~ 142 (229)
T pfam04016 75 RALGLAALNALSNYLLDACPEDDENG-DALDL-----LEILPGKKVVVVGYF--A-PVLKRLRERG---AEVTVLERNPR 142 (229)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHH-----HHCCCCCEEEEECCC--H-HHHHHHHHCC---CCEEEEECCCC
T ss_conf 99999999986354200054454556-76664-----210599989998577--5-8899998648---96799966875
Q ss_pred -------CCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHH-CCEEEEECCHHHH---HHHHHCCCCEEEECCCCCHH
Q ss_conf -------999889998623783899807899999997135440-5803997188999---99997699669987999988
Q gi|255764510|r 154 -------AYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAK-ISAAFLCLSNNIA---SAIPASYKNVVTVACFPKET 222 (232)
Q Consensus 154 -------~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~-~~~~~~~ig~~tA---~~~~~~g~~~~~va~~p~~~ 222 (232)
..........+.+.|++++|.++-+..=++.+...- .....+-+||++- +.+...|...+.=..--|.+
T Consensus 143 ~~~~~~~~~p~~~~~~lLp~~D~viITgstlvN~Tl~~lL~~~~~~~~vvl~GPS~p~~P~~l~~~Gv~~lag~~V~d~d 222 (229)
T pfam04016 143 LLDPAEGDLPDEAAEELLPEADVVIITGSTLVNGTLERLLALARKAAEVVLVGPSAPLLPEALFGYGVDVLAGVRVTDPD 222 (229)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEEEECHH
T ss_conf 57887888897898875124889999840354189899997476587799989986357789963897678677871899
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|255764510|r 223 SLLKLLP 229 (232)
Q Consensus 223 ~ll~al~ 229 (232)
.++++++
T Consensus 223 ~~~~~i~ 229 (229)
T pfam04016 223 KLLRAIA 229 (229)
T ss_pred HHHHHHC
T ss_conf 9988549
No 80
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=70.96 E-value=7.5 Score=18.38 Aligned_cols=206 Identities=18% Similarity=0.124 Sum_probs=94.5
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHH--H-HHHHHHHCCCCCEECCCHHHHHHHHHHCC
Q ss_conf 9999999879829994210000078-520016447587999848467--9-99886200136300041589999764101
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSES--L-STLPANFCRHTPIFAIGEASACLARQKGF 89 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~a--v-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232)
-..+.++++|++++....-.-.... ...........|+||+++.+. . ..+......+.|+..++..... ...
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~e~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~d~~~~~----~~~ 95 (267)
T cd01536 20 GAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSDIDG----GNR 95 (267)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC----CCC
T ss_conf 9999999849999999699999999999999997599999993158415589999999879969998256678----886
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHH
Q ss_conf 2235444545678999864220-1277753897215675620-------1468984698256768875046899988999
Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQKV-LFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMK 161 (232)
Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~ 161 (232)
... ...+ ....+....+... ...+..+++++.|...... +.+.|++++........|.....+.-.....
T Consensus 96 ~~~-V~~D-~~~~g~~a~~~L~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (267)
T cd01536 96 LAY-VGTD-NYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAVQDGNWDREKALQAME 173 (267)
T ss_pred CEE-EECC-HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHH
T ss_conf 459-9628-89999999999999749994799954899886899999999999984558662022200110257889999
Q ss_pred HHHC---CCCEEEEECHHHHHHHHHHCCHHHC--CEEEEECCHH-HHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 8623---7838998078999999971354405--8039971889-9999997699669987999988999
Q gi|255764510|r 162 NLLQ---NADAILFYARSSVLYFFSLPLPAKI--SAAFLCLSNN-IASAIPASYKNVVTVACFPKETSLL 225 (232)
Q Consensus 162 ~~~~---~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~ig~~-tA~~~~~~g~~~~~va~~p~~~~ll 225 (232)
.++. ++++|+.++-..+....+.+...+. ++.++.+... .+..+-..|.--..+...|..-+-.
T Consensus 174 ~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~~di~viG~D~~~~~~~~~~~~~~lttv~q~~~~~G~~ 243 (267)
T cd01536 174 DLLQANPDIDAIFAANDSMALGAVAALKAAGRKGDVKIVGVDGSPEALAAIKEGGILATVAQDPYTQGYL 243 (267)
T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 7764179862999716499999999999769999939999898399999985599659992799999999
No 81
>pfam03358 FMN_red NADPH-dependent FMN reductase.
Probab=70.64 E-value=7.7 Score=18.34 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=5.2
Q ss_pred CCCCEEEEECHH
Q ss_conf 378389980789
Q gi|255764510|r 165 QNADAILFYARS 176 (232)
Q Consensus 165 ~~~d~i~f~S~~ 176 (232)
...|+++|.||.
T Consensus 67 ~~aD~iV~~sP~ 78 (147)
T pfam03358 67 AAADGLIIVTPE 78 (147)
T ss_pred HHCCCCEEECCC
T ss_conf 957876880630
No 82
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=69.35 E-value=8.2 Score=18.17 Aligned_cols=184 Identities=13% Similarity=0.092 Sum_probs=92.7
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCC--CCCCCCCCCEEEEECHHH--HHHHHHHHCCCCCEECCCHHHHHHHHHHCC
Q ss_conf 9999999879829994210000078520--016447587999848467--999886200136300041589999764101
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESV--FLAMQQSYGAIAITSSES--LSTLPANFCRHTPIFAIGEASACLARQKGF 89 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~--~~~~~~~~d~iiftS~~a--v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232)
...+.++++|++++....-.-.+..... ....-...|++|++++.. -+........+.|+..++..... ...
T Consensus 20 gi~~~~~~~GY~~~i~~~~~~~~~~~~~~~~~l~~~~vdGiIl~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~----~~~ 95 (270)
T cd01545 20 GALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPD----PDS 95 (270)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCC----CCC
T ss_conf 9999999849989999699999899999999999669998999478889999999999779979998788778----999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHH
Q ss_conf 22354445456789998642201277753897215675620-------14689846982567688750468999-88999
Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMK 161 (232)
Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~ 161 (232)
..+.. +....+..+.++... .+.+++++++|...... +.+.|.++|..+....+......... .+...
T Consensus 96 ~~V~~---Dn~~~~~~a~~~L~~-~G~~~I~~i~g~~~~~~~~~R~~Gf~~a~~~~gi~~~~~~i~~~~~s~~~~~~~~~ 171 (270)
T cd01545 96 PCVRI---DDRAAAREMTRHLID-LGHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAE 171 (270)
T ss_pred CEEEE---CHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHH
T ss_conf 78997---889999999999997-49965999369977736999999999999983999772122026531026999999
Q ss_pred HHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHH
Q ss_conf 862---37838998078999999971354405----803997188999999
Q gi|255764510|r 162 NLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAI 205 (232)
Q Consensus 162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~ 205 (232)
.++ .++++|+-.+-..+...+..+...+. ++.++.+...--...
T Consensus 172 ~ll~~~~~~tai~~~nD~~A~g~~~~l~~~g~~iP~dvsiigfD~~~~~~~ 222 (270)
T cd01545 172 ALLALPDRPTAIFASNDDMAAGVLAVAHRRGLRVPDDLSVVGFDDTPIATT 222 (270)
T ss_pred HHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf 998559998589978889999999999981899999869999888599983
No 83
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=68.67 E-value=8.4 Score=18.09 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=91.9
Q ss_pred CEEEE--ECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCC-CCCE---
Q ss_conf 93898--58968869999999987982999421000007852001644758799984846799-98862001-3630---
Q gi|255764510|r 1 MYIVI--TRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCR-HTPI--- 73 (232)
Q Consensus 1 M~ili--tRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~-~~~~--- 73 (232)
+||++ +||.+. .-+.+..+++++++...|-. +.. .......+||+|+..|..-+. -+...+.. ..++
T Consensus 2 ~Ki~~~~~~~~e~-~~~~~~~~~~~~e~~~~~~~----~~~-~~~~~~~~~d~v~~~~~~~i~~evl~~l~~~~LK~I~~ 75 (330)
T PRK12480 2 TKIMFFGTRDYEK-EMALNWGKKNNVEVTTSKEL----LSS-ATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQ 75 (330)
T ss_pred CEEEEEECCHHHH-HHHHHHHHHCCEEEEEECCC----CCH-HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEE
T ss_conf 6699983768669-99999887749069995698----998-99998479998999607978999999655679759998
Q ss_pred ECCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H-------HCCCCCCEEEEECCC
Q ss_conf 004158--999976410122354445456789998642-------------------2-------012777538972156
Q gi|255764510|r 74 FAIGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K-------VLFTPQKPLIYLGGK 125 (232)
Q Consensus 74 ~~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~-------~~~~~~~~vl~~~g~ 125 (232)
..+|-. =-.++.+.|......+.......++...-+ + .....++.+.++.-.
T Consensus 76 ~gvG~D~IDl~aa~~~GI~V~n~P~~~~~aVAE~ai~liL~l~R~~~~~~~~~~~~~~~~~~~~~g~~l~gktvGIiG~G 155 (330)
T PRK12480 76 RTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred CCEECCHHCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 77217521699999789999959986828999999999999984549999999827876456557752358689996758
Q ss_pred CCCCCHHHHHHHCCCEEEEEEEEEECCCCCC--HHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 7562014689846982567688750468999--88999862378389980789999
Q gi|255764510|r 126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP--ETTMKNLLQNADAILFYARSSVL 179 (232)
Q Consensus 126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~i~f~S~~~v~ 179 (232)
.....+.+.+...|.+|..+..|.....+.. ...+.+++.+.|.|.+--|.+-+
T Consensus 156 ~IG~~va~~~~~fg~~Vi~yD~~~~~~~~~~~~~~sleell~~sDiIslh~Plt~~ 211 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKE 211 (330)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECCCHHHHHHHCCEEEECCCCCHH
T ss_conf 89999999987569989998998642212132327899998759999973768533
No 84
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=68.57 E-value=8.5 Score=18.07 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 587999--848467999886200136300041589999764101223544454567899986422012777538972156
Q gi|255764510|r 48 SYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK 125 (232)
Q Consensus 48 ~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~ 125 (232)
+.+.|+ ++|..+.-........+.+++..+...............+............+.+.... .+.+++.++..+
T Consensus 67 ~v~~iiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~-~~~~~vaiv~~~ 145 (299)
T cd04509 67 GVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKE-YNWKKVAILYDD 145 (299)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH-HCCCEEEEECCC
T ss_conf 9469977887488999999999828942226757830035678874698438879999999999998-089779995577
Q ss_pred C-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEE-CHHHHHHHHHHCCHHHC
Q ss_conf 7-----56201468984698256768875046899988999862-378389980-78999999971354405
Q gi|255764510|r 126 P-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFY-ARSSVLYFFSLPLPAKI 190 (232)
Q Consensus 126 ~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~-S~~~v~~~~~~~~~~~~ 190 (232)
. ..+.+.+.+.+.|..+.....|.... .+....+..+. .++|+|++. .+.....|++.+...+.
T Consensus 146 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~-~d~~~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~ 216 (299)
T cd04509 146 DSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGT-TDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGL 216 (299)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 40679999999999998799799998469999-899999999996699999990771899999999997599
No 85
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.32 E-value=8.6 Score=18.04 Aligned_cols=176 Identities=11% Similarity=0.097 Sum_probs=92.7
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf 999999987982999421000007852001644758799984846799-9886200136300041589999764101223
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232)
-..+...++|+..+.+|..+- .........|++|+.++..=. .+......+.|+.++|..-.. ......+
T Consensus 28 ~ve~~A~~~gy~liL~~~~~~------~~~l~~~~VDGvIl~~~~~~d~~i~~L~~~~iP~V~igr~~~~---~~~~~~V 98 (269)
T cd06287 28 AAAESALERGLALCLVPPHEA------DSPLDALDIDGAILVEPMADDPQVARLRQRGIPVVSIGRPPGD---RTDVPYV 98 (269)
T ss_pred HHHHHHHHCCCEEEEECCCCC------HHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCC---CCCCCEE
T ss_conf 999999986998999479986------5568758799899903788977999999769999998987877---8998289
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHC
Q ss_conf 54445456789998642201277753897215675620-------14689846982567688750468999889998623
Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQ 165 (232)
Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~ 165 (232)
..+....+....++ ....+.++|.++.|...... +.+.+.++|+....+.+-.......-.+....++.
T Consensus 99 ---d~Dn~~~~~~a~~h-Li~~GhrrIa~i~g~~~~~~~~~R~~gy~~a~~~~gl~~~~~~~~~~~~~~~g~~a~~~ll~ 174 (269)
T cd06287 99 ---DLQSAATARMLLEH-LRAQGARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLA 174 (269)
T ss_pred ---ECCHHHHHHHHHHH-HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf ---66659999999999-99879987999968986758999999999999877999847997688985999999999971
Q ss_pred ---CCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHH
Q ss_conf ---7838998078999999971354405----803997188999
Q gi|255764510|r 166 ---NADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIA 202 (232)
Q Consensus 166 ---~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA 202 (232)
.+|+|+..+-..+-..++.+...+. ++.++++....-
T Consensus 175 ~~~~~~AI~~~nD~~A~g~l~al~~~Gl~VP~DvsVvgfdD~~~ 218 (269)
T cd06287 175 QHPDLDALCVPVDAFAVGAVRAATELGRAVPDQLRVVTRYDGLR 218 (269)
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHH
T ss_conf 79999779982799999999999985887798766998159289
No 86
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=68.17 E-value=8.6 Score=18.02 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=91.7
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 999999987982999421000007852-001644758799984846-799988620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
.+...+.+.|++++....-.-...... .....-...|++|++|.. .-..+...... .|+..++.. ...+...
T Consensus 20 ~i~~~~~~~Gy~l~l~~s~~~~~~e~~~l~~l~~~~vdGiIi~~~~~~~~~i~~~~~~-~pvV~~~~~-----~~~~~~~ 93 (260)
T cd06286 20 GIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSRENDWEVIEPYTKY-GPIVLCEEY-----DSKNISS 93 (260)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC-CCEEEEECC-----CCCCCCE
T ss_conf 9999999869989999899998999999999984799999993687998999999864-999999577-----8899998
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHH
Q ss_conf 35444545678999864220127775389721567562-------01468984698256768875046899988-99986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~ 163 (232)
+.. +.......+.+.... .+.+++.++.|..... -+.+.++++|..+..-.+|.......... ....+
T Consensus 94 V~~---Dn~~~~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 169 (260)
T cd06286 94 VYI---DHYEAFYEALKYLIQ-KGYRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFTIEDGERIGHQL 169 (260)
T ss_pred EEE---CHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 997---869999999999997-5997399993898870499999999999997799977303644652066799999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHH
Q ss_conf 2---37838998078999999971354405----8039971889999
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIAS 203 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~ 203 (232)
+ .++|+|+..+-..+....+.+.+.+. ++.+++++.....
T Consensus 170 ~~~~~~p~ai~~~nd~~A~g~~~al~~~g~~vP~di~vigfdd~~~~ 216 (260)
T cd06286 170 LKMKDRPDAIFTGSDEVAAGIITEAKKQGIRVPEDLAIIGFDNQPIS 216 (260)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
T ss_conf 84499987367368999999999999729999997699998984998
No 87
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=67.74 E-value=8.8 Score=17.97 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHHHCCH
Q ss_conf 7753897215-----675620146898469825676887504689998899986-2378389980-78999999971354
Q gi|255764510|r 115 PQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFSLPLP 187 (232)
Q Consensus 115 ~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~~~~~ 187 (232)
+.+++.++.. ......+.+.+++.|..+.....|..-.. +....+..+ -.++|+|++. .+...-.|.+.+..
T Consensus 135 g~kkvavl~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~-Dfs~~l~~i~~~~pD~v~~~~~~~~~~~~~~q~~~ 213 (336)
T cd06326 135 GLKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTA-DVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRK 213 (336)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 99759999358758899999999999977993799998689987-77999999984797999992782799999999997
Q ss_pred HHCCEEEEEC
Q ss_conf 4058039971
Q gi|255764510|r 188 AKISAAFLCL 197 (232)
Q Consensus 188 ~~~~~~~~~i 197 (232)
.+.+..++..
T Consensus 214 ~G~~~~~~~~ 223 (336)
T cd06326 214 AGGGAQFYNL 223 (336)
T ss_pred CCCCCEEEEE
T ss_conf 6999759985
No 88
>PRK06932 glycerate dehydrogenase; Provisional
Probab=66.97 E-value=9.1 Score=17.88 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=39.1
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCC---CHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 777538972156756201468984698256768875046899---988999862378389980789999
Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY---PETTMKNLLQNADAILFYARSSVL 179 (232)
Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~---~~~~~~~~~~~~d~i~f~S~~~v~ 179 (232)
..++.+.++.-......+.+.++..|.+|. .|....... ....+.+++.+.|+|.+.-|.+-+
T Consensus 145 L~gktvGIiG~G~IG~~va~~~~~fGm~V~---~~~~~~~~~~~~~~~~l~ell~~sDiIslh~Plt~e 210 (314)
T PRK06932 145 VRGSTLGVFGKGCLGSEVGRLATALGMKVL---YAEHKGATECREGYTPFEEVLKQADIVTLHCPLTES 210 (314)
T ss_pred ECCCEEEEECCCHHHHHHHHHHHCCCCEEE---EECCCCCHHHCCCCCCHHHHHHCCCEEEEEECCCCC
T ss_conf 038688997635288899999852898899---978766123234657599996235836895113010
No 89
>PRK11823 DNA repair protein RadA; Provisional
Probab=66.02 E-value=9 Score=17.92 Aligned_cols=21 Identities=10% Similarity=-0.183 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHCCCCEEEECCC
Q ss_conf 1889999999769966998799
Q gi|255764510|r 197 LSNNIASAIPASYKNVVTVACF 218 (232)
Q Consensus 197 ig~~tA~~~~~~g~~~~~va~~ 218 (232)
+..|+.++. .+||+.+++++.
T Consensus 407 ~~~Rl~EA~-rlGf~~~ivP~~ 427 (454)
T PRK11823 407 GEERLKEAA-KLGFKRAIVPKA 427 (454)
T ss_pred HHHHHHHHH-HCCCCEEEECCC
T ss_conf 899999999-869988995787
No 90
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=64.28 E-value=10 Score=17.56 Aligned_cols=189 Identities=12% Similarity=0.139 Sum_probs=84.8
Q ss_pred HHHHHHHCCCCEEEECCEEE-ECCCCCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999987982999421000-007852001644758799984846--799988620013630004158999976410122
Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYF-IHDRESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i-~~~~~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
+...+.+.|+.++..+.-.- +..............|++|+.+.. ....+........|+..++.... ......
T Consensus 86 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iP~V~~~~~~~----~~~~~~ 161 (342)
T PRK10014 86 LTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVVFASRASY----LDDVDT 161 (342)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE
T ss_conf 9999998198899994799989999999987623988899957877888999999855997999568778----899988
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCC-CHHHHHHH
Q ss_conf 35444545678999864220127775389721567562-------01468984698256768875046899-98899986
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAY-PETTMKNL 163 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~-~~~~~~~~ 163 (232)
+. .+.......+.++. ...+.+++.|+.|..... -+.+.|+++|..+..--++....... ..+.+..+
T Consensus 162 V~---~D~~~~~~~a~~~L-~~~Ghr~Ia~i~~~~~~~~~~~R~~gf~~al~~~~l~~~~~~i~~~~~~~~~~~~~~~~l 237 (342)
T PRK10014 162 VR---PDNMQAAQLLTEHL-IRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITAL 237 (342)
T ss_pred EE---ECHHHHHHHHHHHH-HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 98---57699999999999-875998699995788863399999999999997699988334896689789999999999
Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHH----C---------CEEEEECCHHHHHHHHHCCCC
Q ss_conf 2---3783899807899999997135440----5---------803997188999999976996
Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAK----I---------SAAFLCLSNNIASAIPASYKN 211 (232)
Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~----~---------~~~~~~ig~~tA~~~~~~g~~ 211 (232)
+ ..+++++.++...+......+...+ . ++.+++++...-.....-.+.
T Consensus 238 l~~~~~~tAi~c~~D~~A~g~~~~l~~~g~~v~~d~~~~~ip~~vsIigfdd~~~~~~~~P~LT 301 (342)
T PRK10014 238 LRHNPTISAVVCYNETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVPEAELDDPPLT 301 (342)
T ss_pred HHCCCCCCEEEEECHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCE
T ss_conf 8369997189996789999999999995822175533347898589999888488862589856
No 91
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=64.11 E-value=10 Score=17.55 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=50.6
Q ss_pred HHHHHHHHHCCCCCCEEEEEC-----CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CH
Q ss_conf 999864220127775389721-----5675620146898469825676887504689998899986-2378389980-78
Q gi|255764510|r 103 AKIIVEQKVLFTPQKPLIYLG-----GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-AR 175 (232)
Q Consensus 103 ~~ll~~~~~~~~~~~~vl~~~-----g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~ 175 (232)
...+..........+++.++. |......+.+.+.+.|..+....-|.... .+....+..+ ..++|+|++. .+
T Consensus 122 ~~~~~~~~~~~~g~k~v~i~~~~~~~g~~~~~~~~~~~~~~g~~iv~~~~~~~~~-~d~s~~v~~l~~~~~d~v~~~~~~ 200 (340)
T cd06349 122 APLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGE-KDFRPTITRLRDANPDAIILISYY 200 (340)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999999997349837999836861778999999999997499699986258666-757999999986699999991575
Q ss_pred HHHHHHHHHCCHHHCCEEEEECCHH
Q ss_conf 9999999713544058039971889
Q gi|255764510|r 176 SSVLYFFSLPLPAKISAAFLCLSNN 200 (232)
Q Consensus 176 ~~v~~~~~~~~~~~~~~~~~~ig~~ 200 (232)
.....|++.+...+.+..++..+..
T Consensus 201 ~~~~~~~~~~~~~G~~~~~~~~~~~ 225 (340)
T cd06349 201 NDGAPIARQARAVGLDIPVVASSSV 225 (340)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 3599999999976999709985476
No 92
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=63.54 E-value=11 Score=17.48 Aligned_cols=171 Identities=12% Similarity=0.143 Sum_probs=86.4
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCC
Q ss_conf 99999998798299942100000785200164475879998484679998862001363000415899997641012235
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIF 93 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~ 93 (232)
...+.+.++|+.++.+-. .+.........|++|..+...-..+........|+..++... ...+...+.
T Consensus 25 gie~~a~~~Gy~l~i~~~-------~~~~~~~~~~VDGiI~~~~~~~~~~~~l~~~~~PvV~id~~~----~~~~~~~V~ 93 (270)
T cd01544 25 GIEKRAQELGIELTKFFR-------DDDLLEILEDVDGIIAIGKFSQEQLAKLAKLNPNLVFVDSNP----APDGFDSVV 93 (270)
T ss_pred HHHHHHHHCCCEEEEEEC-------CCCHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC----CCCCCCEEE
T ss_conf 999999980999999968-------999999972899999928999999999996299899992767----888999899
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC------------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHH
Q ss_conf 44454567899986422012777538972156756------------20146898469825676887504689998-899
Q gi|255764510|r 94 HGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN------------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTM 160 (232)
Q Consensus 94 ~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~------------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~ 160 (232)
.. ....+..+.++. ...+.+++.++.|.... .-+.+.|+++|.....+ ++......... ...
T Consensus 94 ~D---n~~~~~~a~~~L-i~~Ghr~I~~i~g~~~~~~~~~~~~~~R~~Gy~~al~~~g~~~~~~-~~~~~~~~~~g~~~~ 168 (270)
T cd01544 94 PD---FEQAVEKALDYL-LELGHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGLYDPEL-IYIGDFTVESGYQLM 168 (270)
T ss_pred EC---HHHHHHHHHHHH-HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCHHHHHHHH
T ss_conf 88---899999999999-9779986999957766775122568999999999999859999644-996689979999999
Q ss_pred HHHHC-----CCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf 98623-----7838998078999999971354405----8039971889
Q gi|255764510|r 161 KNLLQ-----NADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232)
Q Consensus 161 ~~~~~-----~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232)
..+++ .+++|+.++-..+..+++.+...+. ++.++.+...
T Consensus 169 ~~~l~~~~~~~ptAi~~~nD~~A~g~l~~l~~~gl~VP~DisviGfDd~ 217 (270)
T cd01544 169 KEALKSLGDNLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVISFNDI 217 (270)
T ss_pred HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 9999728878997899823188999999999879988776599997780
No 93
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=63.28 E-value=11 Score=17.45 Aligned_cols=180 Identities=11% Similarity=0.113 Sum_probs=90.8
Q ss_pred HHHHHHHHHCCCCEEEECCEE-EECCCCCCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 999999998798299942100-00078520016447587999848467-9998862001363000415899997641012
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSY-FIHDRESVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~-i~~~~~~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
..+...+.++|++++..-.-. .+.-............|+||+.+... -.........+.|+..++.... .....
T Consensus 19 ~gi~~~a~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDgiIl~~~~~~~~~~~~~~~~~iPvV~i~~~~~----~~~~~ 94 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGKPVVLVDRKIP----ELGVD 94 (267)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCC
T ss_conf 99999999869989999789998999999999996699999985877998999999976998999688578----99998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC-C-------CCCHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHH
Q ss_conf 235444545678999864220127775389721567-5-------62014689846982567688750468999-88999
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKP-R-------NFHFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMK 161 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~-~-------~~~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~ 161 (232)
.+.. +.......+.++.. ..+.+++.++.+.. . ..-+.+.+.++|..+....+......... ...+.
T Consensus 95 ~V~~---D~~~~~~~~~~~L~-~~G~~~i~~i~~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (267)
T cd06283 95 TVTL---DNYEAAKEAVDHLI-EKGYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEIDDEDADELDERLR 170 (267)
T ss_pred EEEE---CHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 8997---77999999999999-7599729999568778837999999999999975997651489833542677999999
Q ss_pred HHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf 862---37838998078999999971354405----8039971889
Q gi|255764510|r 162 NLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232)
Q Consensus 162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232)
.++ .++|+|+..|-..+..+...+...+. ++.++++...
T Consensus 171 ~~l~~~~~~~aii~~~D~~A~g~~~~l~~~g~~vP~disVvg~dd~ 216 (267)
T cd06283 171 QLLNKPKKKTAIFAANGLILLEVLKALKELGIRIPEDVGLIGFDDT 216 (267)
T ss_pred HHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCH
T ss_conf 9984799986420377099999999999829988987668853886
No 94
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=11 Score=17.42 Aligned_cols=29 Identities=3% Similarity=-0.340 Sum_probs=20.9
Q ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 03997188999999976996699879999
Q gi|255764510|r 192 AAFLCLSNNIASAIPASYKNVVTVACFPK 220 (232)
Q Consensus 192 ~~~~~ig~~tA~~~~~~g~~~~~va~~p~ 220 (232)
++.+..+.+--+.+..+||+.+++++...
T Consensus 404 IR~V~~~~~RlkEA~klGFk~aivP~~~~ 432 (456)
T COG1066 404 IRPVPRGERRLKEAAKLGFKRAIVPKGNI 432 (456)
T ss_pred EEECCCHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 54267588999999975897797468767
No 95
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=62.55 E-value=7 Score=18.56 Aligned_cols=60 Identities=7% Similarity=-0.007 Sum_probs=42.4
Q ss_pred EEEECHH--HHHHHHHHCCHHHCCEEEEECCHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 9980789--9999997135440580399718899999997----6996699879999889999986
Q gi|255764510|r 170 ILFYARS--SVLYFFSLPLPAKISAAFLCLSNNIASAIPA----SYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 170 i~f~S~~--~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~----~g~~~~~va~~p~~~~ll~al~ 229 (232)
|++|=+. .+++.++.++..+.-++.++.||.-|+++++ .|-.+.|+.+..+.++|++|-.
T Consensus 412 ~LLTDGEDN~i~sC~~eVkqsGaIiHtiALGpsAa~ele~lS~mTGG~~fYa~D~~~~NgLidAFg 477 (874)
T TIGR00868 412 VLLTDGEDNTISSCIEEVKQSGAIIHTIALGPSAAKELEELSDMTGGLRFYASDEADNNGLIDAFG 477 (874)
T ss_pred EEEECCCCCCEEECHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHH
T ss_conf 983068757623130554109808998507845899999987333871133413333141454664
No 96
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=62.30 E-value=11 Score=17.34 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=45.2
Q ss_pred CCEEEEECHHHHHHHHHHCCHHH---CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 83899807899999997135440---58039971889999999769966998799998899999
Q gi|255764510|r 167 ADAILFYARSSVLYFFSLPLPAK---ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKL 227 (232)
Q Consensus 167 ~d~i~f~S~~~v~~~~~~~~~~~---~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~a 227 (232)
.+.|.|.+++.+..|.......+ ....+.+++|.++..+...|+.........+.+...+.
T Consensus 51 ls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~~~gl~~~~~~~~~~~~~~~~~ 114 (117)
T COG1366 51 LSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLELTGLDKSFIITPTELEAALAL 114 (117)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 8888774545899999999999866994899929999999999939741255233407788752
No 97
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=62.29 E-value=11 Score=17.34 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=17.6
Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 999999769966998799998899999861
Q gi|255764510|r 201 IASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 201 tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
+|+.+-..+......+..+|.|.++++|.+
T Consensus 325 iAe~A~~~~~~~~n~Pr~~T~edi~~~~~~ 354 (366)
T PRK09423 325 VAEAACAEGETIHNMPFKVTPEDVAAAILA 354 (366)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999982465522279999999999999999
No 98
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.27 E-value=11 Score=17.34 Aligned_cols=96 Identities=5% Similarity=-0.073 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHH-HHHH-CCCCEEEEECHH--H---HHHHHHHCCHHHC-CEEEEE-
Q ss_conf 75620146898469825676887504689998899-9862-378389980789--9---9999971354405-803997-
Q gi|255764510|r 126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTM-KNLL-QNADAILFYARS--S---VLYFFSLPLPAKI-SAAFLC- 196 (232)
Q Consensus 126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~-~~~~-~~~d~i~f~S~~--~---v~~~~~~~~~~~~-~~~~~~- 196 (232)
.+.+.+...|+..|+.|.....++ .++.+ ..+. .++|+|..+|-+ . ++.+.+.+.+.+. ++.++|
T Consensus 14 ~G~~iva~~l~d~GfeVi~lG~~~------s~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~vG 87 (122)
T cd02071 14 RGAKVIARALRDAGFEVIYTGLRQ------TPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 779999999997897699679988------99999999997399899996465544789999999999769998469994
Q ss_pred --CCHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf --18899999997699669987999988999998
Q gi|255764510|r 197 --LSNNIASAIPASYKNVVTVACFPKETSLLKLL 228 (232)
Q Consensus 197 --ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al 228 (232)
|.+.-.+.+++.|+..+.-+.+ +.+..++.+
T Consensus 88 G~Ip~~d~~~l~~~Gv~~vf~pgt-~~~~iv~~i 120 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGT-SIEEIIDKI 120 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCC-CHHHHHHHH
T ss_conf 564989999999779988989588-999999997
No 99
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=61.39 E-value=12 Score=17.25 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=24.2
Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf 9389858968-8699999999879829994
Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232)
Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232)
||||||=-.. -+..++..|.+.|++++.+
T Consensus 1 MkvLVTGg~GFIGs~l~~~Ll~~g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 919998987679999999999784989999
No 100
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.98 E-value=12 Score=17.20 Aligned_cols=200 Identities=14% Similarity=0.080 Sum_probs=98.8
Q ss_pred HHHHHHHCCCCEEEECCEEEECCCCC----CCCCCCCCCCEEEEEC--HHHHH-HHHHHHCCCCCEECCCHHHHHHHHHH
Q ss_conf 99999987982999421000007852----0016447587999848--46799-98862001363000415899997641
Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHDRES----VFLAMQQSYGAIAITS--SESLS-TLPANFCRHTPIFAIGEASACLARQK 87 (232)
Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~~~~----~~~~~~~~~d~iiftS--~~av~-~~~~~~~~~~~~~~vg~~t~~~~~~~ 87 (232)
..+..+++|++++..- ....+.. +........|+||+.. ..+.. .+......++|+.++..... .
T Consensus 21 ~~~~a~~~G~~~~~~~---~~~d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~~~~~~a~~~gIPvv~~d~~~~-----~ 92 (277)
T cd06319 21 VKSKAKALGYDAVELS---AENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIADIGAE-----G 92 (277)
T ss_pred HHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCC-----C
T ss_conf 9999997299899976---9999999999999999669987996477741109999999976997899865877-----7
Q ss_pred CCCCCCCCCCC---HHHHHHHHHHHHH-CCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf 01223544454---5678999864220-12777538972156756-------2014689846982567688750468999
Q gi|255764510|r 88 GFTQIFHGKDN---SINLAKIIVEQKV-LFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYP 156 (232)
Q Consensus 88 ~~~~~~~~~~~---~~~~~~ll~~~~~-~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~ 156 (232)
+.........+ +....+.+.+... .....+++.++.+...+ .-+.+.|.+.|..+..+..+........
T Consensus 93 ~~~~~~v~~dn~~~g~~~g~~l~~~~~~~~~~~~~v~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~ 172 (277)
T cd06319 93 GDYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGIRQQKDFSYQET 172 (277)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf 66431653235899999999999986764778866999965877623999999999999875997679996089999999
Q ss_pred HHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC--CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 88999862---37838998078999999971354405--8039971--88999999976996699879999889
Q gi|255764510|r 157 ETTMKNLL---QNADAILFYARSSVLYFFSLPLPAKI--SAAFLCL--SNNIASAIPASYKNVVTVACFPKETS 223 (232)
Q Consensus 157 ~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ 223 (232)
......++ .++++|+-++...+....+.+...+. ++.++.+ .+..-+.++ .|.-...+.+.|-..+
T Consensus 173 ~~~~~~~L~~~p~i~ai~~~~d~~a~Ga~~a~~~~G~~~~i~vvg~D~~~~~~~~i~-~G~~~~tv~q~p~~~G 245 (277)
T cd06319 173 FDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKTGKVLLICFDAEPEFIELLK-SGALVGAGMQQPFLMG 245 (277)
T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH-CCCCEEEEECCHHHHH
T ss_conf 999999997389976899669889999999999759999858996379799999987-5993699964999999
No 101
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=60.03 E-value=12 Score=17.10 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=54.3
Q ss_pred CCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHH
Q ss_conf 127775389721567562-------0146898469825676887504689998-8999862---3783899807899999
Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLY 180 (232)
Q Consensus 112 ~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~ 180 (232)
...+..++.++.|..... -+.+.|.++|..+...-+++........ +....++ ..+++|+.++-..+-.
T Consensus 174 ~~~Ghr~Ia~i~~~~~~~~~~~R~~gf~~al~~~gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~ptAi~~~nD~~A~g 253 (335)
T PRK10703 174 IERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGDFEPESGYEAMQQILSQEHRPTAVFCGGDIMAMG 253 (335)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
T ss_conf 97599869999588765217899999999999859998813289657885889999999995699986689687599999
Q ss_pred HHHHCCHHHC----CEEEEECCHHHHH
Q ss_conf 9971354405----8039971889999
Q gi|255764510|r 181 FFSLPLPAKI----SAAFLCLSNNIAS 203 (232)
Q Consensus 181 ~~~~~~~~~~----~~~~~~ig~~tA~ 203 (232)
+++.+...+. ++.++++...-..
T Consensus 254 ~~~~l~~~g~~VP~DisvigfDd~~~~ 280 (335)
T PRK10703 254 AICAADEMGLRVPQDISVIGYDNVRNA 280 (335)
T ss_pred HHHHHHHCCCCCCCCEEEEEECCCHHH
T ss_conf 999999719999997499998882899
No 102
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=58.88 E-value=13 Score=16.98 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=93.8
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC--CCCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 9999999879829994210000078--520016447587999848467-9998862001363000415899997641012
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR--ESVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~--~~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
.+.+.+.++|++++.+..-+-.+.. .-.....-...|++|+.+... ..........+.|+..++... ..+..
T Consensus 20 gie~~~~~~Gy~~~l~~~~~~~~~~~~~~i~~l~~~~vdGiI~~~~~~~~~~~~~~~~~~iPvV~i~~~~-----~~~~~ 94 (264)
T cd01574 20 AIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAAPADVPVVFVDGSP-----SPRVS 94 (264)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCC-----CCCCC
T ss_conf 9999999849979999799998999999999999649999999168899699999985899689986679-----99998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH
Q ss_conf 2354445456789998642201277753897215675620-------146898469825676887504689998-89998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232)
.+.. +....+..+..+... .+.+++.++.|...... +.+.|.++|..... +|......... .....
T Consensus 95 ~V~~---Dn~~~~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~G~~~al~~~~i~~~~--~~~~~~~~~~~~~~~~~ 168 (264)
T cd01574 95 TVSV---DQEGGARLATEHLLE-LGHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPP--VLEGDWSAESGYRAGRE 168 (264)
T ss_pred EEEE---CHHHHHHHHHHHHHH-CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCE--EEECCCCHHHHHHHHHH
T ss_conf 8997---889999999999998-49982732589977757999999999999986989744--88668997999999999
Q ss_pred HH--CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHH
Q ss_conf 62--37838998078999999971354405----803997188999
Q gi|255764510|r 163 LL--QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIA 202 (232)
Q Consensus 163 ~~--~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA 202 (232)
++ .++|+|+..+-..+..+.+.+...+. ++.+++++..--
T Consensus 169 l~~~~~~~aii~~~D~~A~g~i~~l~~~g~~iP~di~iigfd~~~~ 214 (264)
T cd01574 169 LLREGDPTAVFAANDQMALGVLRALHELGLRVPDDVSVVGFDDIPE 214 (264)
T ss_pred HHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHH
T ss_conf 9837999689636429999999999982998898847998688178
No 103
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=58.76 E-value=13 Score=16.97 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=27.4
Q ss_pred CEEEEECCHHH------HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 93898589688------699999999879829994210000078520016447587999848
Q gi|255764510|r 1 MYIVITRPIKK------ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232)
Q Consensus 1 M~ilitRp~~~------a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232)
||+||+-...+ +...++.|.+ |.++-..++-+ ....++.+||.||+-|
T Consensus 1 MK~LIiYsS~dG~T~kIa~~Ia~~L~~-~~~v~l~~l~~-------~~~~~l~~yD~IIIGA 54 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHR-------IEEPDLSQYDRVVIGA 54 (177)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCC-CCCEEEEECCC-------CCCCCHHHCCEEEECC
T ss_conf 948999989997399999999998504-89379997410-------3558977889899805
No 104
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.42 E-value=13 Score=16.93 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=94.5
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 99999999879829994210000078520016447587999848467-99988620013630004158999976410122
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
....+.+.++|+.++.+..-+ .........-...|++|+.+... -..+......+.|+..++... . .+...
T Consensus 24 ~gie~~~~~~gy~l~l~~~~~---~~~~~~~~~~~~vDGiIi~~~~~~~~~~~~l~~~~iPvV~idr~~----~-~~~~~ 95 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS---EDSDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVVDQPL----P-PGVPS 95 (283)
T ss_pred HHHHHHHHHCCCEEEEEECCC---CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCC----C-CCCCE
T ss_conf 999999998499899996999---999999999779999999179899899999985799789988768----8-99998
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC------------------------CCCCHHHHHHHCCCEEEEEEE
Q ss_conf 35444545678999864220127775389721567------------------------562014689846982567688
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKP------------------------RNFHFEDYLIEHKIPLRVIDC 147 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~------------------------~~~~l~~~L~~~g~~v~~~~v 147 (232)
+... .......+.++.. ..+.+++.++++.. ...-+.+.|+++|..+....+
T Consensus 96 V~~D---n~~~~~~a~~~Li-~~Gh~~Ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~G~~~al~~~gl~~~~~~i 171 (283)
T cd06279 96 VGID---DRAAAREAARHLL-DLGHRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALEEAGIDISDVPI 171 (283)
T ss_pred EEEC---CHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 9967---2887999999999-72998699995245566544432210136642477999999999999985999772057
Q ss_pred EEECCCC-CC-HHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf 7504689-99-88999862---37838998078999999971354405----8039971889
Q gi|255764510|r 148 YYSQDIA-YP-ETTMKNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232)
Q Consensus 148 Y~~~~~~-~~-~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232)
+..-... .. ......++ .++++|+.++-..+...++.+...+. ++.++.+...
T Consensus 172 ~~~~~~~~~~g~~~~~~ll~~~~~ptai~~~nD~~A~g~~~~l~~~Gi~VP~DvsviGfDd~ 233 (283)
T cd06279 172 WEIPENDRASGEEAARELLDASPRPTAILCMSDVLALGALQVARELGLRVPEDLSVVGFDGI 233 (283)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 84599999999999999995599996698577299999999999818999996599958988
No 105
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative; InterPro: IPR011916 This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II..
Probab=56.44 E-value=14 Score=16.73 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHH
Q ss_conf 89999999769966998-79999889999986
Q gi|255764510|r 199 NNIASAIPASYKNVVTV-ACFPKETSLLKLLP 229 (232)
Q Consensus 199 ~~tA~~~~~~g~~~~~v-a~~p~~~~ll~al~ 229 (232)
...++++.+.||.+|.. ++.+++-.|++.|+
T Consensus 206 sali~AL~a~Gy~vVLTsgPD~~e~~mV~~I~ 237 (347)
T TIGR02201 206 SALIDALAAEGYEVVLTSGPDKDELKMVDEIA 237 (347)
T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 99999885189569882898986799999997
No 106
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.51 E-value=15 Score=16.66 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=16.1
Q ss_pred CEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE
Q ss_conf 5389721567562014689846982567688750
Q gi|255764510|r 117 KPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS 150 (232)
Q Consensus 117 ~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~ 150 (232)
.+..++|++.+-+. |.++|+.++.+.+=++
T Consensus 248 ~k~~IFcadsal~~----L~k~GIkPDyVc~ld~ 277 (594)
T COG2604 248 DKATIFCADSALPI----LAKHGIKPDYVCSLDP 277 (594)
T ss_pred CCEEEEECCCCCHH----HHHCCCCCCEEEEECC
T ss_conf 55399988975457----9867999776998564
No 107
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=54.62 E-value=15 Score=16.55 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEE
Q ss_conf 9986422012777538972156756-------20146898469825676887504689998-8999862---37838998
Q gi|255764510|r 104 KIIVEQKVLFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILF 172 (232)
Q Consensus 104 ~ll~~~~~~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f 172 (232)
..+.++ ....+..++.++.+.... .-+.+.|.++|..+. .+|......... .....++ ..+|+|+-
T Consensus 168 ~~a~~~-L~~~GhrrI~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~--~~~~~~~~~~~g~~~~~~ll~~~~~p~Ai~~ 244 (330)
T PRK11303 168 EMLAES-LLKFPAESILLLGALPELSVSFLREQGFRQALKDDPREVH--FLYAESFSREAGAQLFEKWLETHGMPDALFT 244 (330)
T ss_pred HHHHHH-HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE--EEECCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999-9986999799996897563799999999999996799805--9964889989999999999837999977997
Q ss_pred ECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHH
Q ss_conf 078999999971354405----80399718899999
Q gi|255764510|r 173 YARSSVLYFFSLPLPAKI----SAAFLCLSNNIASA 204 (232)
Q Consensus 173 ~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~ 204 (232)
.|-..+...++.+...+. ++.++++...--..
T Consensus 245 ~nD~~A~g~l~al~~~g~~VP~DvsvigfDd~~~~~ 280 (330)
T PRK11303 245 TSYTLLQGVLDVLLERPGKLPSDLAIATFGDNELLD 280 (330)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
T ss_conf 489999999999998599999975999999628897
No 108
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=54.61 E-value=15 Score=16.55 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=66.5
Q ss_pred CCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC-
Q ss_conf 7587999--8484679998862001363000415899997641012235444545678999864220127775389721-
Q gi|255764510|r 47 QSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLG- 123 (232)
Q Consensus 47 ~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~- 123 (232)
.+.++|+ ++|..+............++...+..... +.... ...+............+........+.+++.++.
T Consensus 66 d~V~aviG~~~S~~~~a~~~~~~~~~vp~is~~a~~~~-~t~~~-~~~fr~~~~~~~~~~~~a~~~~~~~g~~~vai~~~ 143 (334)
T cd06347 66 DKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSATNPK-VTQGK-DYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYD 143 (334)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCEEEECCCCCHH-HHCCC-CCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 79779976785687898899999719648713777823-30589-85585105875899999999999759878999984
Q ss_pred -CCC----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEE-CHHHHHHHHHHCCHHHCCEEEE
Q ss_conf -567----56201468984698256768875046899988999862-378389980-7899999997135440580399
Q gi|255764510|r 124 -GKP----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFY-ARSSVLYFFSLPLPAKISAAFL 195 (232)
Q Consensus 124 -g~~----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~-S~~~v~~~~~~~~~~~~~~~~~ 195 (232)
+.. ..+.+.+.+.+.|..+....-|..-. .+....+..+. .++|+|++. .+.....|++.+...+.+..++
T Consensus 144 ~~~~y~~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~D~~~~i~~i~~~~pD~v~~~~~~~~~~~~~~q~~~~G~~~~~~ 221 (334)
T cd06347 144 NSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGD-TDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQARELGIKVPIL 221 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 6966879999999999997597489997158888-87699999998659999999366167999999999769977699
No 109
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=54.61 E-value=15 Score=16.67 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=9.2
Q ss_pred CCCCEEEEECHHHHHHHHHH
Q ss_conf 37838998078999999971
Q gi|255764510|r 165 QNADAILFYARSSVLYFFSL 184 (232)
Q Consensus 165 ~~~d~i~f~S~~~v~~~~~~ 184 (232)
.++++.+++= +++..+.+.
T Consensus 133 ~gI~vtlI~D-sav~~~m~~ 151 (253)
T PRK06372 133 SGIDVVLLTD-ASMCEAVLN 151 (253)
T ss_pred CCCCEEEEEC-HHHHHHHHH
T ss_conf 6997899801-699999974
No 110
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=54.55 E-value=15 Score=16.55 Aligned_cols=90 Identities=8% Similarity=-0.039 Sum_probs=51.2
Q ss_pred CCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHHHH---CCCCEEEEECHHHHHHH
Q ss_conf 2777538972156756-------2014689846982567688750468-99988999862---37838998078999999
Q gi|255764510|r 113 FTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKNLL---QNADAILFYARSSVLYF 181 (232)
Q Consensus 113 ~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~i~f~S~~~v~~~ 181 (232)
..+.+++.++.|.... .-+.+.|.++|..+..-.++..... ..-.+....++ ..+++|+..+-..+-.+
T Consensus 171 ~~Ghr~I~~i~~~~~~~~~~~R~~gf~~al~~~gl~~~~~~~~~~~~~~~~g~~~~~~ll~~~~~ptAi~~~nD~~A~g~ 250 (327)
T PRK10423 171 DKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLAHPLRPQAVFTGNDAMAVGV 250 (327)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH
T ss_conf 75997499966887661799999999999998599988436996046737899999999847999984551780999999
Q ss_pred HHHCCHHHC----CEEEEECCHHHH
Q ss_conf 971354405----803997188999
Q gi|255764510|r 182 FSLPLPAKI----SAAFLCLSNNIA 202 (232)
Q Consensus 182 ~~~~~~~~~----~~~~~~ig~~tA 202 (232)
++.+...+. ++.++++...--
T Consensus 251 ~~al~~~g~~iP~DisvigfDd~~~ 275 (327)
T PRK10423 251 YQALYQAGLQVPQDIAVIGYDDIEL 275 (327)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCHH
T ss_conf 9999986999999759999758289
No 111
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=54.52 E-value=15 Score=16.54 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 587999--848467999886200136300041589999764101223544454567899986422012777538972156
Q gi|255764510|r 48 SYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK 125 (232)
Q Consensus 48 ~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~ 125 (232)
+.+.|+ ++|..+............+.+..+.+.. ...... .-.+............+...... ...+++.++..+
T Consensus 66 ~V~~ivG~~~S~~~~a~~~~~~~~~vp~is~~~~~~-~~~~~~-~y~fr~~~~~~~~~~~~~~~~~~-~g~kkvail~~~ 142 (312)
T cd06333 66 KVDAIIGPSTTPATMAVAPVAEEAKTPMISLAPAAA-IVEPKR-KWVFKTPQNDRLMAEAILADMKK-RGVKTVAFIGFS 142 (312)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCC-CCCCCC-CCEEECCCCHHHHHHHHHHHHHH-CCCCEEEEEECC
T ss_conf 933986687737788889999974986997478761-224898-70796159879999999999997-399889999617
Q ss_pred -----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEEC-HHHHHHHHHHCCHHHCCEEEE
Q ss_conf -----75620146898469825676887504689998899986-23783899807-899999997135440580399
Q gi|255764510|r 126 -----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYA-RSSVLYFFSLPLPAKISAAFL 195 (232)
Q Consensus 126 -----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S-~~~v~~~~~~~~~~~~~~~~~ 195 (232)
...+.+.+.+++.|..+.....|..... +....+..+ ..++|+|++.+ ......+.+.+.+.+.+..++
T Consensus 143 ~~yg~~~~~~~~~~~~~~G~~vv~~~~~~~~~~-Dfs~~l~ki~~~~pD~v~~~~~~~~~~~~~~q~~~~G~~~~~~ 218 (312)
T cd06333 143 DAYGESGLKELKALAPKYGIEVVADERYGRTDT-SVTAQLLKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGPIY 218 (312)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-CHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 605599999999999977993999997279876-7799999998569899999457516999999999769987088
No 112
>PRK07567 glutamine amidotransferase; Provisional
Probab=53.96 E-value=16 Score=16.49 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=35.3
Q ss_pred CE---EEEECCHHHH--HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 93---8985896886--99999999879829994210000078520016447587999848
Q gi|255764510|r 1 MY---IVITRPIKKA--LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232)
Q Consensus 1 M~---ilitRp~~~a--~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232)
|| +|-+||.+.. .++...++..|.++-.+-.+++.-.+ ....++++||++|++-
T Consensus 1 m~pfLllq~R~~~~~a~~E~~~f~~~~gl~~~q~~~~rld~~~--~p~~dL~~ydgvivgG 59 (242)
T PRK07567 1 MKPFLLLQPRPEDEVADAEYAAFLRYGGLKPAELRRIRLDHEE--LPDLDLDDFSGVIVGG 59 (242)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHEEEEEECCCC--CCCCCHHHCCEEEEEC
T ss_conf 9866999617965889999999999749988997999814889--9987830007899948
No 113
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.95 E-value=16 Score=16.39 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=101.6
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 9999999879829994210000078-52001644758799984846--79998862001363000415899997641012
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
-+...+++.|+.++....-.-.... .-.........|++|+.+.. ....+......+.|+..++... ......
T Consensus 20 gi~~~a~~~gy~lll~~t~~~~~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~~~~iPvV~i~~~~----~~~~~~ 95 (268)
T cd06289 20 GLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREV----AGAPFD 95 (268)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCC
T ss_conf 9999999869989999589998999999999996599989994688899999999997599899836767----999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf 2354445456789998642201277753897215675620-------14689846982567688750468999-889998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232)
.+. .+.......+.+... ..+.+++.++.+...... +.+.+.++|..+....++........ ......
T Consensus 96 ~V~---~d~~~~~~~a~~~L~-~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (268)
T cd06289 96 YVG---PDNAAGARLATEHLI-SLGHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQ 171 (268)
T ss_pred EEE---ECHHHHHHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 899---777999999999999-7398709995289887069999999999999769986643453168865569999999
Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHCC----EEEEECCHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 62---378389980789999999713544058----0399718899999997699669987999988
Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKIS----AAFLCLSNNIASAIPASYKNVVTVACFPKET 222 (232)
Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~~----~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~ 222 (232)
++ ..+++|+..+-..+-.+++.+.+.+.+ +.+++++..- .+....-.-..+...|..-
T Consensus 172 ~l~~~~~~~aii~~~D~~A~g~l~~l~~~gi~vp~disiigfd~~~--~~~~~~p~ltti~~~~~~~ 236 (268)
T cd06289 172 LLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDVA--EAALATPALTTVSTDPREI 236 (268)
T ss_pred HHHCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHH--HHHHCCCCEEEEEECHHHH
T ss_conf 9846999862035768999999999998499999854999957878--9972289716998499999
No 114
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=52.34 E-value=17 Score=16.33 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=36.8
Q ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHHHCCHHHCCEEEEECC
Q ss_conf 146898469825676887504689998899986-2378389980-7899999997135440580399718
Q gi|255764510|r 131 FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFSLPLPAKISAAFLCLS 198 (232)
Q Consensus 131 l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~~~~~~~~~~~~~~ig 198 (232)
+.+.+.+.|+.+....-|..-.. +....+..+ -.++|+|+++ .+...-.|.+.+.+.+....++.+|
T Consensus 168 ~~~~~~~~G~~vv~~~~~~~g~~-Dfs~~l~kik~~~pD~V~~~~~~~d~~~~~kQ~~~~G~~~~i~~~~ 236 (357)
T cd06337 168 LPAALADAGYKLVDPGRFEPGTD-DFSSQINAFKREGVDIVTGFAIPPDFATFWRQAAQAGFKPKIVTIA 236 (357)
T ss_pred HHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 99999865988987640179864-4899999998559999998787468999999999759998758861
No 115
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.87 E-value=17 Score=16.29 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=92.5
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf 999999987982999421000007852-0016447587999848467999886200136300041589999764101223
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232)
.+...++++|++++.+..-.-...... .....-...|+||+.+...-...........|+..++... .......+
T Consensus 20 gi~~~~~~~gy~~ll~~t~~~~~~e~~~l~~l~~~~vdGiI~~~~~~~~~~~~~~~~~~P~V~idr~~----~~~~~~~V 95 (263)
T cd06280 20 AVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRATLRRLAELRLSFPVVLIDRAG----PAGRVDAV 95 (263)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEEEECCCC----CCCCCCEE
T ss_conf 99999998699899997899989999999999816987999878878767999970899689992568----88999889
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--
Q ss_conf 544454567899986422012777538972156756------201468984698256768875046899988999862--
Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN------FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-- 164 (232)
Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-- 164 (232)
.. +....+..+.++.. ..+.+++.++.|.... .-+.+.|.++|..+....+..+ .+.-......++
T Consensus 96 ~~---Dn~~~~~~a~~~L~-~~Ghr~I~~l~g~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~--~~~~~~~~~~~l~~ 169 (263)
T cd06280 96 VL---DNRAAARTLVEHLV-AQGYRRIGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFVAPT--AEAAEAALAAWLAA 169 (263)
T ss_pred EE---CHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC--HHHHHHHHHHHHHC
T ss_conf 98---88999999999998-60896699993899843999999999999976999763782487--67899999999827
Q ss_pred -CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCC
Q ss_conf -37838998078999999971354405----803997188999999976996
Q gi|255764510|r 165 -QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKN 211 (232)
Q Consensus 165 -~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~ 211 (232)
..+|+|+..+-..+...++.+...+. ++.++++...--...-.-.+.
T Consensus 170 ~~~~~ai~~~nD~~A~g~l~~l~~~g~~vP~disviGfDd~~~a~~~~P~LT 221 (263)
T cd06280 170 PERPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDPWTELVGPGIT 221 (263)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCCCCE
T ss_conf 9999789967889999999999984899999878999778588861799977
No 116
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=51.48 E-value=17 Score=16.25 Aligned_cols=124 Identities=13% Similarity=-0.017 Sum_probs=70.1
Q ss_pred CCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCC----CCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 587999848467999886200136300041589999764101223544----4545678999864220127775389721
Q gi|255764510|r 48 SYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHG----KDNSINLAKIIVEQKVLFTPQKPLIYLG 123 (232)
Q Consensus 48 ~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~vl~~~ 123 (232)
+.+|.-|.|...+--.+.. .+..+..+|..........+....... .+.++.+...-........++++|.++.
T Consensus 52 kV~W~~F~sG~~~~eAlas--G~vDig~~G~~P~~~a~a~g~~ik~v~i~~~~~~~ealvv~~~I~s~~DLkGKkVav~~ 129 (320)
T PRK11480 52 TVDWRKFDSGASIVRALAS--GDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKTISKPEDLIGKRIAVPF 129 (320)
T ss_pred CEEEEECCCHHHHHHHHHC--CCCCEECCCCCHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCHHHCCCCEEECCC
T ss_conf 1279977975999999966--99756457784799998679985999985478974389956899996884999896078
Q ss_pred CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEECHHH
Q ss_conf 5675620146898469825676887504689998899986-23783899807899
Q gi|255764510|r 124 GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYARSS 177 (232)
Q Consensus 124 g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S~~~ 177 (232)
|......|...|++.|.....+.+-.+.|. +....+ .+++|++...-|..
T Consensus 130 gS~~hy~ll~aL~~~Gl~~~dV~iv~m~p~----d~~aA~~~G~vDa~~~W~P~l 180 (320)
T PRK11480 130 ISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRGDIDGAYVWAPAV 180 (320)
T ss_pred CCCHHHHHHHHHHHCCCCHHHEEEEECCCH----HHHHHHHCCCCCEEEECCHHH
T ss_conf 873189999999985999899078844928----899999769978796267799
No 117
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=51.25 E-value=17 Score=16.23 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=25.4
Q ss_pred EECHHHHHHHHHHC----CH-HHC-CEEEEECCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 80789999999713----54-405-80399718899999997699669987999
Q gi|255764510|r 172 FYARSSVLYFFSLP----LP-AKI-SAAFLCLSNNIASAIPASYKNVVTVACFP 219 (232)
Q Consensus 172 f~S~~~v~~~~~~~----~~-~~~-~~~~~~ig~~tA~~~~~~g~~~~~va~~p 219 (232)
+-|.|++..|.+.+ +. ... ++..+|=|..|++.++++|+......+.|
T Consensus 21 lGTGST~~~~i~~LG~~v~~Ge~l~~i~gVpTS~~t~~lA~~~GIpl~~l~~~~ 74 (236)
T TIGR00021 21 LGTGSTVAYFIEALGERVKQGEGLDNIVGVPTSKQTAELARELGIPLSSLDEVP 74 (236)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCCEEECCCCCC
T ss_conf 245046899999999874367755643588483899999998298040225577
No 118
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=50.74 E-value=18 Score=16.18 Aligned_cols=83 Identities=10% Similarity=0.046 Sum_probs=44.6
Q ss_pred CCCCCCEEEEEC------CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHH
Q ss_conf 127775389721------5675620146898469825676887504689998899986-2378389980-7899999997
Q gi|255764510|r 112 LFTPQKPLIYLG------GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFS 183 (232)
Q Consensus 112 ~~~~~~~vl~~~------g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~ 183 (232)
.....+++.++- |......+.+.+++.|..|.....|..-.. +....+..+ ..++|+|++. .+...-.|++
T Consensus 132 ~~~g~k~vav~~~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~-Dfs~~l~~i~~~~pD~v~~~~~~~~~~~~~~ 210 (344)
T cd06348 132 LNPGIKRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDT-DFQAQITAVLNSKPDLIVISALAADGGNLVR 210 (344)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
T ss_conf 677998899999489758999999999999876985899871689860-1789999987519999999457425999999
Q ss_pred HCCHHHCCEEEE
Q ss_conf 135440580399
Q gi|255764510|r 184 LPLPAKISAAFL 195 (232)
Q Consensus 184 ~~~~~~~~~~~~ 195 (232)
.+...+.+..++
T Consensus 211 q~~~~G~~~~~~ 222 (344)
T cd06348 211 QLRELGYNGLIV 222 (344)
T ss_pred HHHHCCCCCEEE
T ss_conf 999769997099
No 119
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=50.61 E-value=18 Score=16.17 Aligned_cols=105 Identities=10% Similarity=-0.141 Sum_probs=41.7
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHHHCCEE
Q ss_conf 77538972156756201468984698256768875046899988999862-37838998078999999971354405803
Q gi|255764510|r 115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPAKISAA 193 (232)
Q Consensus 115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~~~~~~ 193 (232)
.+..|+--|....---......+.|..+. +.+=++.|.-+-.....++. .++++.+++=+. +..+.+...---...-
T Consensus 109 dg~~ILTH~~s~all~vi~~A~~~g~~~~-V~v~ETRP~~qG~~la~eL~~~gI~~tlI~Dsa-~~~~m~~~d~vivGAD 186 (276)
T PRK08335 109 DGDVIITHSFSSAVLEIFKTAKRRGKSFK-VILTESAPDYEGLALANELEALGIEFEVITDAQ-MGLFCKKATLAIVGAD 186 (276)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEE-EEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHH-HHHHHHCCCEEEECCC
T ss_conf 99879985673899999999998799207-999659952789999999996699838960216-9999644999998750
Q ss_pred --------EEECCH-HHHHHHHHCCCCEEEECCCCCH
Q ss_conf --------997188-9999999769966998799998
Q gi|255764510|r 194 --------FLCLSN-NIASAIPASYKNVVTVACFPKE 221 (232)
Q Consensus 194 --------~~~ig~-~tA~~~~~~g~~~~~va~~p~~ 221 (232)
+==||. ..|-.++..|....+++++.+.
T Consensus 187 ~i~~nG~v~NKiGT~~lAl~Ak~~~iPfyVaa~s~k~ 223 (276)
T PRK08335 187 NVTRDGAVVNKAGTYLLALACHENGVPFYVAAETYKF 223 (276)
T ss_pred EEECCCCEEEHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 6734886653543599999999839988997765433
No 120
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=49.73 E-value=18 Score=16.08 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=34.3
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC-HHHH
Q ss_conf 898589688699999999879829994210000078520016447587999848-4679
Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS-SESL 60 (232)
Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS-~~av 60 (232)
||.+.+.+....+.+.|++.|...+..-.++.... ....++.+||++|+|- +.++
T Consensus 4 il~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~dgvii~Gg~~~~ 59 (188)
T cd01741 4 ILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAG---ELLPDLDDYDGLVILGGPMSV 59 (188)
T ss_pred EEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCC---CCCCCHHHCCEEEEECCCCCC
T ss_conf 99779999974899999966998468999966669---899784440889996998777
No 121
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=49.01 E-value=19 Score=16.01 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=69.3
Q ss_pred CCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHH-----HHHHHCCHHHCC-EEE-
Q ss_conf 156756201468984698256768875046899988999862-378389980789999-----999713544058-039-
Q gi|255764510|r 123 GGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVL-----YFFSLPLPAKIS-AAF- 194 (232)
Q Consensus 123 ~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~-----~~~~~~~~~~~~-~~~- 194 (232)
|...+...|-..|+.+||+|..+-+-..+ .+-+..++ .+.|+|+++|=..-- .+.+.+.+.+.. +.+
T Consensus 13 cHAVG~k~LDhaf~nagF~V~NlGv~~~~-----~efi~AAiet~ADAilvSSlYGhg~~DC~Glr~~c~eaGl~~illY 87 (134)
T TIGR01501 13 CHAVGNKVLDHAFRNAGFTVVNLGVLTAQ-----EEFIKAAIETDADAILVSSLYGHGEIDCAGLRDKCAEAGLDAILLY 87 (134)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCH-----HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 02454378888873289889872131615-----7888773228998899830207800012457899986588827998
Q ss_pred ----EECC----HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf ----9718----89999999769966998799998899999861
Q gi|255764510|r 195 ----LCLS----NNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 195 ----~~ig----~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
++.| +.+.+..++.|+-.| .|++.+.|.-++++++
T Consensus 88 VGGNlvVGk~df~dV~~rFkeMGfDRV-fap~t~~E~v~~~~k~ 130 (134)
T TIGR01501 88 VGGNLVVGKTDFEDVEKRFKEMGFDRV-FAPQTDLEAVVDALKK 130 (134)
T ss_pred ECCEEEECCCCHHHHHHHHHHCCCCEE-ECCCCCHHHHHHHHHH
T ss_conf 767665577673678888764587332-3698582278999987
No 122
>PRK11062 nhaR transcriptional activator NhaR; Provisional
Probab=48.77 E-value=19 Score=15.99 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=58.8
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCE
Q ss_conf 77538972156756201468984698256768875046899--9889998623783899807899999997135440580
Q gi|255764510|r 115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISA 192 (232)
Q Consensus 115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~ 192 (232)
....+-+.|..+..++|.+.|..+..++-- ...|.+. ........+......+|.++..... ..+....+.
T Consensus 118 ~~~~v~l~~~eg~~~~LL~~L~~~~LDlvL----sd~p~~~~~~~~~~s~~L~~~~v~~~~~~~l~~~---~fP~~L~~~ 190 (296)
T PRK11062 118 EDESIHLRCFESTHEMLLEQLSQHKLDMIL----SDCPVDSTQQEGLFSKKLGECGVSFFCTNPLPEK---PFPACLEER 190 (296)
T ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCCEEE----ECCCCCCCCCCCEEEEECCCCCEEEEECCCCCCC---CCHHHHCCC
T ss_conf 289779999349879999999838987576----0688875568863898746684689845744458---795775579
Q ss_pred EEE------ECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf 399------718899999997699669987999988999998614
Q gi|255764510|r 193 AFL------CLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLR 231 (232)
Q Consensus 193 ~~~------~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~ 231 (232)
.++ ++....-.-+.+.|+++.++++ -|+.+|++++.+.
T Consensus 191 plllp~~~S~lR~~ld~wf~~~gI~P~Iv~E-~dD~allk~~a~~ 234 (296)
T PRK11062 191 RLLIPGRRTMLGRKLLNWFNSQGLNVEILGE-FDDAALMKAFGAY 234 (296)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE-ECCHHHHHHHHHH
T ss_conf 8402799875899999999968998449998-5989999999981
No 123
>KOG0068 consensus
Probab=48.64 E-value=19 Score=15.98 Aligned_cols=207 Identities=16% Similarity=0.119 Sum_probs=100.9
Q ss_pred CE-EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHH--HHHHHCCCCCE---E
Q ss_conf 93-898589688699999999879829994210000078520016447587999848467999--88620013630---0
Q gi|255764510|r 1 MY-IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLST--LPANFCRHTPI---F 74 (232)
Q Consensus 1 M~-ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~--~~~~~~~~~~~---~ 74 (232)
|| ||++.+.+++ =.+.|++.|+++...--+..+ .-...+.++|+++.-|..=|.. +.. .....++ +
T Consensus 6 ~~~il~~e~~~~~--~~~~l~~~g~~v~~~~~~~~e-----el~~~i~~~~aviVrs~tkvtadvl~a-a~~~lkvVgra 77 (406)
T KOG0068 6 MRKILVAESLDQA--CIEILKDNGYQVEFKKNLSLE-----ELIEKIKDCDALIVRSKTKVTADVLEA-AAGGLKVVGRA 77 (406)
T ss_pred CCEEEEECCCCHH--HHHHHHHCCCEEEEECCCCHH-----HHHHHHCCCCEEEEEECCEECHHHHHH-HCCCEEEEEEC
T ss_conf 3429984333668--899998517157886258989-----999986049889998577012999986-03874899851
Q ss_pred CCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH----HHHH---------------------CCCCCCEEEEECCCCC
Q ss_conf 04158--9999764101223544454567899986----4220---------------------1277753897215675
Q gi|255764510|r 75 AIGEA--SACLARQKGFTQIFHGKDNSINLAKIIV----EQKV---------------------LFTPQKPLIYLGGKPR 127 (232)
Q Consensus 75 ~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~----~~~~---------------------~~~~~~~vl~~~g~~~ 127 (232)
++|-. --.+...+|......+..++..-+|+-. .+.. +...++.+.++.-...
T Consensus 78 g~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrI 157 (406)
T KOG0068 78 GIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRI 157 (406)
T ss_pred CCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCEEECCEEEEEEECCEEEEEECCCC
T ss_conf 35756547255775783899589887177999999999997512031001543584110120146775667888504621
Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCC----CHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHH
Q ss_conf 6201468984698256768875046899----988999862378389980789999999713544058039971889999
Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAY----PETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIAS 203 (232)
Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~----~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~ 203 (232)
..++...++..|..+.....|....... .--.+.+.+...|.|.+--|.+-. ..+ -++..|-+
T Consensus 158 GseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~-----------T~~--lin~~tfA 224 (406)
T KOG0068 158 GSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPS-----------TEK--LLNDETFA 224 (406)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCEEEEHHHHHHHCCEEEECCCCCCC-----------HHH--CCCHHHHH
T ss_conf 18999999865854886068784677875165454098877556889981678821-----------431--13878999
Q ss_pred HHHHCCCCEEEECCC--CCHHHHHHHHH
Q ss_conf 999769966998799--99889999986
Q gi|255764510|r 204 AIPASYKNVVTVACF--PKETSLLKLLP 229 (232)
Q Consensus 204 ~~~~~g~~~~~va~~--p~~~~ll~al~ 229 (232)
.+ +.|.+.+-++.. -|+++|++||.
T Consensus 225 ~m-KkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068 225 KM-KKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred HH-HCCCEEEEECCCCEECHHHHHHHHH
T ss_conf 86-0785899824775206399998885
No 124
>PRK03619 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=48.03 E-value=19 Score=15.92 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=30.9
Q ss_pred CEEEEECCHH-H-HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf 9389858968-8-6999999998798299942100000785200164475879998484
Q gi|255764510|r 1 MYIVITRPIK-K-ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232)
Q Consensus 1 M~ilitRp~~-~-a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232)
|||.|.|-.. - -.+.+..++..|+++...= ..+ ..+.+||.++|.-.
T Consensus 1 mkvaIl~~pGsNcd~e~~~Af~~~G~~~~~v~-----~~d-----~~L~~~~~lv~pGG 49 (223)
T PRK03619 1 MKIAVITFPGTNCDVDMAHAIRLAGAEPVYVW-----HTD-----TDLDGVDAVVLPGG 49 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE-----ECC-----CCCCCCCEEEECCC
T ss_conf 96999971764949999999998699569998-----447-----98764538998350
No 125
>PRK05568 flavodoxin; Provisional
Probab=47.56 E-value=20 Score=15.88 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf 6999999998798299942100000785200164475879998484
Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232)
Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232)
+...++-+++.|+++-.+.+.+.. ..++.++|.|+|-||
T Consensus 19 A~~Iaegl~~~Gv~V~~~~~~~~~-------~~di~~~d~i~~Gsp 57 (142)
T PRK05568 19 ANLIAEGAKENGLEVKLLNVSEAS-------VDDVENADVVALGSP 57 (142)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCC-------HHHHHHCCEEEEECC
T ss_conf 999999998669839999800499-------889973996899477
No 126
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=47.02 E-value=20 Score=15.83 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=28.0
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 3898589688699999999879829994210
Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLS 32 (232)
Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli 32 (232)
|-+||=|..=+.+=.+-|+.+|+|++..|+-
T Consensus 90 k~Iiv~PeKmS~eKv~VL~AlGAEivrtPT~ 120 (527)
T TIGR01137 90 KCIIVLPEKMSEEKVDVLKALGAEIVRTPTA 120 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCEEEECCCC
T ss_conf 3999868754614789999819807787888
No 127
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=46.68 E-value=20 Score=15.79 Aligned_cols=61 Identities=7% Similarity=0.048 Sum_probs=35.8
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHH
Q ss_conf 775389721567562014689846982567688750468999889998623783899807899
Q gi|255764510|r 115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSS 177 (232)
Q Consensus 115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~ 177 (232)
.+.+++|++|++....+.-.-++.|..-+.+-+|.....+...+.+. ..+++.+++=|=++
T Consensus 109 ~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~--~~kP~~lIIDSIQT 169 (372)
T cd01121 109 RGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE--ELKPDLVIIDSIQT 169 (372)
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH--HHCCCEEEEECHHH
T ss_conf 39938998245678999989998587887727884356999999999--71998899956220
No 128
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=46.58 E-value=20 Score=15.78 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=123.9
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCC-----CCCCCCCCCCCEEEEE----CHHHH-----------
Q ss_conf 938985896886999999998798299942100000785-----2001644758799984----84679-----------
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRE-----SVFLAMQQSYGAIAIT----SSESL----------- 60 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~-----~~~~~~~~~~d~iift----S~~av----------- 60 (232)
|+|.|.=--.+.-.+++.|.+.|+++...=+-....... +.....+.+.|.||+- +.++.
T Consensus 3 ~~iaviGGD~Rq~~l~~~L~~~g~~V~~~gf~~~~~~~~~~~~~~~~~~~~~~~d~iIlPvpg~~d~g~i~~~~~~~~~~ 82 (296)
T PRK08306 3 MHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGVAKCSSLEEALSDVDVIILPVPGTNDEGEVDTVFSNEKLV 82 (296)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCHHHHHHCCCEEEECCCCCCCCCEEECCCCCCCCC
T ss_conf 48999787589999999999779979998357655566761773467888723999997883225896385534678763
Q ss_pred --HHHHHHHCCCCCEEC--CCHHHHHHHHHHCCCCC----------CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf --998862001363000--41589999764101223----------5444545678999864220127775389721567
Q gi|255764510|r 61 --STLPANFCRHTPIFA--IGEASACLARQKGFTQI----------FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKP 126 (232)
Q Consensus 61 --~~~~~~~~~~~~~~~--vg~~t~~~~~~~~~~~~----------~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~ 126 (232)
+-+......+..+|+ ..+...+.....+.... ....+.+++......++......+.+++++....
T Consensus 83 l~~~~~~~l~~~~~vf~G~~~~~l~~~~~~~~~~~~d~~e~d~vAi~NaipTAEGai~~ai~~tp~ti~gs~~lVlG~Gr 162 (296)
T PRK08306 83 LTKELLEKTPEHCTIFSGIANPYLKELAETTGRKLIELFERDDVAIYNSIPTAEGAIMMAIEHTPITIHGSNVLVLGFGR 162 (296)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCH
T ss_conf 22999974699987999559989999999759836762002035556270148999999996599632476589989868
Q ss_pred CCCCHHHHHHHCCCEEEEEEEEEECCC-----------CCCHHHHHHHHCCCCEEEEECHHHH--HHHHHHCCHHHCCEE
Q ss_conf 562014689846982567688750468-----------9998899986237838998078999--999971354405803
Q gi|255764510|r 127 RNFHFEDYLIEHKIPLRVIDCYYSQDI-----------AYPETTMKNLLQNADAILFYARSSV--LYFFSLPLPAKISAA 193 (232)
Q Consensus 127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~-----------~~~~~~~~~~~~~~d~i~f~S~~~v--~~~~~~~~~~~~~~~ 193 (232)
....+...|...|..|. +|.+.+. ......+...+.+.|.|+=|=|..+ +..++.++++-.-+-
T Consensus 163 ~G~~lA~~l~~lGA~V~---V~aR~~~~~a~a~~~G~~~v~~~~L~~~~~~~D~i~NTIPa~Vlt~~~l~~~~~~avIID 239 (296)
T PRK08306 163 TGMTLARTLKALGAKVK---VGARKSAHLARITEMGYSPVHLSELAEEVGEADIIFNTIPALVLTKNVLSKMPPHALIID 239 (296)
T ss_pred HHHHHHHHHHHCCCEEE---EEECCHHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEECCCHHHCCHHHHHCCCCCCEEEE
T ss_conf 99999999997799699---997999999999976985871999997735699999898525439999941899969999
Q ss_pred EE-ECCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99-718899999997699669987999
Q gi|255764510|r 194 FL-CLSNNIASAIPASYKNVVTVACFP 219 (232)
Q Consensus 194 ~~-~ig~~tA~~~~~~g~~~~~va~~p 219 (232)
+. -.|-+=-+++++.|.+....+.=|
T Consensus 240 LAS~PGG~Df~~A~~~Gika~lapgLP 266 (296)
T PRK08306 240 LASKPGGTDFEYAKKLGIKALLAPGLP 266 (296)
T ss_pred ECCCCCCCCHHHHHHHCCEEEECCCCC
T ss_conf 477999738899998398599728999
No 129
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.69 E-value=21 Score=15.70 Aligned_cols=200 Identities=16% Similarity=0.103 Sum_probs=98.3
Q ss_pred HHHHHHHCCCCEEEECCEEEECCCC----CCCCCCCCCCCEEEEECH--HHH-HHHHHHHCCCCCEECCCHHHHHHHHHH
Q ss_conf 9999998798299942100000785----200164475879998484--679-998862001363000415899997641
Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHDRE----SVFLAMQQSYGAIAITSS--ESL-STLPANFCRHTPIFAIGEASACLARQK 87 (232)
Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~~~----~~~~~~~~~~d~iiftS~--~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~ 87 (232)
..+..+++|++++... -..... .+.......+|+||++.. .+. ..+.......+|+.++...........
T Consensus 22 ~e~~A~~~G~~~~v~~---~~~d~~~q~~~i~~~i~~~vd~Iii~p~d~~~~~~~i~~a~~agIpVv~~d~~~~~~~~~~ 98 (275)
T cd06317 22 FQAAAEEDGVEVIVLD---ANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSNISEKGFEF 98 (275)
T ss_pred HHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCE
T ss_conf 9999997699899977---9999999999999999759999999678712457999999986994999768887667752
Q ss_pred CCCCCCCCCCC---HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-
Q ss_conf 01223544454---56789998642201277753897215675620-------14689846982567688750468999-
Q gi|255764510|r 88 GFTQIFHGKDN---SINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP- 156 (232)
Q Consensus 88 ~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~- 156 (232)
...+....+ +...++.+.+ .....++++++.|...... +.+.|.+.+-.++.+...........
T Consensus 99 --~~~~~g~d~~~~G~~~a~~l~~---~~~~~~~v~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~i~iv~~~~~~~~~~~a 173 (275)
T cd06317 99 --IKSFTGPDDISQGERSAEAMCK---ALGGKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLDTQPADWDREKA 173 (275)
T ss_pred --EEEEECCCHHHHHHHHHHHHHH---HCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf --8998558589999999999998---64999617999379998599999999999999858875698887414778999
Q ss_pred HHHHHHHHC----CCCEEEEECHHHHHHHHHHCCHHHC--CEEEEECC--HHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 889998623----7838998078999999971354405--80399718--8999999976996699879999889
Q gi|255764510|r 157 ETTMKNLLQ----NADAILFYARSSVLYFFSLPLPAKI--SAAFLCLS--NNIASAIPASYKNVVTVACFPKETS 223 (232)
Q Consensus 157 ~~~~~~~~~----~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~ig--~~tA~~~~~~g~~~~~va~~p~~~~ 223 (232)
......++. ++|+|+-.+...+....+.+...+. ++.++.+. +..-+.+ +.|.-...+.+.|...+
T Consensus 174 ~~~~~~lL~~~~~~i~~I~~~nd~~a~Ga~~Al~~~G~~~~v~vvg~d~~~~~~~~i-~~G~~~~tv~q~p~~~G 247 (275)
T cd06317 174 QVAMEALITKFGDDIDGVYAGDDNMARGALNAAKEAGLAGGIVIVGANNFAVGYEAI-RAGKYYGTIYQSPVDDG 247 (275)
T ss_pred HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH-HCCCCEEEEECCHHHHH
T ss_conf 999999987345753344058957899999999974998998799879809999999-85998399925999999
No 130
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=44.77 E-value=22 Score=15.61 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 889998623783899
Q gi|255764510|r 157 ETTMKNLLQNADAIL 171 (232)
Q Consensus 157 ~~~~~~~~~~~d~i~ 171 (232)
+..+...+..+.+|+
T Consensus 189 p~~l~~~L~~ipGVV 203 (228)
T PRK13978 189 PYKFHEYLIHLTGVF 203 (228)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999987799998
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=44.63 E-value=22 Score=15.60 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=59.7
Q ss_pred EEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE---EECHHHHHHHHHHCCHHHCCEEEEE
Q ss_conf 9721567562014689846982567688750468999889998623783899---8078999999971354405803997
Q gi|255764510|r 120 IYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL---FYARSSVLYFFSLPLPAKISAAFLC 196 (232)
Q Consensus 120 l~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~---f~S~~~v~~~~~~~~~~~~~~~~~~ 196 (232)
.++.|..-|+||.++|++- |.+ ++..++.--..+..|+.|+ =||..+.+ .-.+++|...+=.+=|
T Consensus 275 ~LLAGTKYRGDFE~RLK~V---~~E--------i~~~~~anILFIDEIHTIVGAGATSGGsmD-ASNLLKPaL~~G~iRC 342 (774)
T TIGR02639 275 TLLAGTKYRGDFEERLKAV---VSE--------IEKEPNANILFIDEIHTIVGAGATSGGSMD-ASNLLKPALASGKIRC 342 (774)
T ss_pred HHHHHCCCCCHHHHHHHHH---HHH--------HHCCCCCCEEEEECCCCEEECCCCCCHHHH-HHHHHHHHHHCCCEEE
T ss_conf 5641024542478999999---999--------852899954664110103317878751552-4432112530787786
Q ss_pred CCHHHHHHHHHCC---------CCEEEECCCCCHHHHHHHHH
Q ss_conf 1889999999769---------96699879999889999986
Q gi|255764510|r 197 LSNNIASAIPASY---------KNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 197 ig~~tA~~~~~~g---------~~~~~va~~p~~~~ll~al~ 229 (232)
||.||=+.=++.+ |+.+=|.+ ||.|.-++-|.
T Consensus 343 IGsTTy~EY~~~FeKDrALsRRFQKIDv~E-Ps~eet~~ILk 383 (774)
T TIGR02639 343 IGSTTYEEYKNHFEKDRALSRRFQKIDVGE-PSIEETVKILK 383 (774)
T ss_pred ECCCCHHHHHCHHHCCCCCCCCCCEECCCC-CCHHHHHHHHH
T ss_conf 226524864111010202165423311795-78889999998
No 132
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=44.30 E-value=22 Score=15.57 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=55.5
Q ss_pred ECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC--CCCC---CCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHH-
Q ss_conf 589688699999999879829994210000078520--0164---4758799984846799988620013630004158-
Q gi|255764510|r 6 TRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV--FLAM---QQSYGAIAITSSESLSTLPANFCRHTPIFAIGEA- 79 (232)
Q Consensus 6 tRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~--~~~~---~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~- 79 (232)
.++.+.+.++.+.|++.|..++.+- -.-...+... .+.. .....--|+||..+...+........++|++|..
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflT-Nn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~ 101 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLT-NNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEG 101 (269)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEEE-CCCCCCHHHHHHHHHHHCCCCCCHHHEECHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9238159999999998699399995-899899899999998626998887776638999999998537898799977810
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999976410122354
Q gi|255764510|r 80 SACLARQKGFTQIFH 94 (232)
Q Consensus 80 t~~~~~~~~~~~~~~ 94 (232)
-.+.+...|+.....
T Consensus 102 l~~~l~~~G~~~~~~ 116 (269)
T COG0647 102 LKEELEGAGFELVDE 116 (269)
T ss_pred HHHHHHHCCCEEECC
T ss_conf 689998689089405
No 133
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=43.94 E-value=22 Score=15.54 Aligned_cols=177 Identities=10% Similarity=0.087 Sum_probs=92.2
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCC-CCCCCCCCCEEEEECHHHHHHH-HHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 9999999879829994210000078520-0164475879998484679998-8620013630004158999976410122
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESV-FLAMQQSYGAIAITSSESLSTL-PANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~~~~~~~~d~iiftS~~av~~~-~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
...+.++++|++++.+..-.-.-..... ....-...|++|+.+...-... ........|+..++.. ..+...
T Consensus 20 gi~~~~~~~gy~~ll~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~PvV~id~~------~~~~~~ 93 (269)
T cd06297 20 GIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLTERLAERRLPTERPVVLVDAE------NPRFDS 93 (269)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECC------CCCCCE
T ss_conf 99999998799899997999779999999999844888799778899989999998639989999337------899898
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC-------------CCCCHHHHHHHCCCEEEEEEEEEECCCCCCH-
Q ss_conf 35444545678999864220127775389721567-------------5620146898469825676887504689998-
Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKP-------------RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE- 157 (232)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~-------------~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~- 157 (232)
+.. +.........++.... +.++.++.+.. ...-+.+.|++.|..+..-.++.........
T Consensus 94 v~~---Dn~~~~~~a~~~L~~~--~~r~~~~~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~g~ 168 (269)
T cd06297 94 FYL---DNRLGGRLAGAYLADF--PGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLLAITDHSEEGGR 168 (269)
T ss_pred EEE---CHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHH
T ss_conf 997---7299999999999970--88089998046776310026899999999999998299866223413786365699
Q ss_pred HHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH
Q ss_conf 8999862---37838998078999999971354405----80399718899
Q gi|255764510|r 158 TTMKNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI 201 (232)
Q Consensus 158 ~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t 201 (232)
+....++ ..+++|+-++-..+-..++.+...+. ++.++.+...-
T Consensus 169 ~~~~~ll~~~~~p~Ai~~~nD~~A~g~l~~l~~~Gi~vP~DisviGfDd~~ 219 (269)
T cd06297 169 LAMRHLLEKASPPLAVFASADQQALGALQEAVELGLTVGEDVRVVGFDDHP 219 (269)
T ss_pred HHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 999999836999858998978999999999998399889966999989848
No 134
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=43.00 E-value=23 Score=15.45 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=28.0
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH
Q ss_conf 3898589688699999999879829994210000078520016447587999848467
Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES 59 (232)
Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a 59 (232)
||-| ++........|++.|++++.+- ...+...+|++|+|-...
T Consensus 3 kIaV---E~~Ls~v~e~L~~~Gy~Vv~l~-----------~~~~~~~~da~VitG~d~ 46 (80)
T pfam03698 3 KIAV---EQSLSNIEEALKEKGYEVVRLK-----------NEQDAQGCDACVVTGLDS 46 (80)
T ss_pred CEEE---CCCCHHHHHHHHHCCCEEEECC-----------CCCCCCCCCEEEEECCCC
T ss_conf 2663---2672599999997798788678-----------703256658899958986
No 135
>PRK07053 glutamine amidotransferase; Provisional
Probab=42.67 E-value=23 Score=15.42 Aligned_cols=54 Identities=7% Similarity=0.056 Sum_probs=35.2
Q ss_pred EEEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE-CHHHH
Q ss_conf 389858--968869999999987982999421000007852001644758799984-84679
Q gi|255764510|r 2 YIVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT-SSESL 60 (232)
Q Consensus 2 ~ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift-S~~av 60 (232)
+|||.+ |.+.-..+.+.|++.|++.-..-+ -..+....+..+||++|++ ++-++
T Consensus 4 ~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~-----~~~~~~p~~~~~~d~livlGGpms~ 60 (235)
T PRK07053 4 TAVAIRHVAFEDLGSFEQVLGERGYRVRYVDV-----GVDDLEVLDALEPDLLVVLGGPIGV 60 (235)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEEEEEEC-----CCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 39999689988986999999978995999967-----8898899996667999993899898
No 136
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=42.49 E-value=24 Score=15.40 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=23.3
Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf 9389858968-8699999999879829994
Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232)
Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232)
||||||=-.. =+..++..|.+.|+++..+
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G~~V~~l 30 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERGEEVRVL 30 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 949998677799999999999784989999
No 137
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=41.87 E-value=24 Score=15.34 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=47.2
Q ss_pred CCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE--CHHHHHHHHHHC
Q ss_conf 777538972156-----75620146898469825676887504689998899986-2378389980--789999999713
Q gi|255764510|r 114 TPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY--ARSSVLYFFSLP 185 (232)
Q Consensus 114 ~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~--S~~~v~~~~~~~ 185 (232)
...+++.++..+ ...+.+.+.+.+.|+.+....-|..-.. +....+..+ ..++|+|++. ++..+..+++.+
T Consensus 136 ~g~k~vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~g~~-Df~~~l~~i~~~~pD~v~~~~~~~~~~~~~~~q~ 214 (347)
T cd06336 136 PGGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTT-DFSPIVTKLLAEKPDVIFLGGPSPAPAALVIKQA 214 (347)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 299789999237604699999999987525976999995488866-7799999999659699999166735799999999
Q ss_pred CHHHCCEEEEE
Q ss_conf 54405803997
Q gi|255764510|r 186 LPAKISAAFLC 196 (232)
Q Consensus 186 ~~~~~~~~~~~ 196 (232)
...+.+..++.
T Consensus 215 ~~~G~~~~~~~ 225 (347)
T cd06336 215 RELGFKGGFLS 225 (347)
T ss_pred HHCCCCCCEEE
T ss_conf 97699875898
No 138
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria..
Probab=41.08 E-value=25 Score=15.27 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCC-----EEEEECHHHHHHHHHHHCCCCCEECCCH-HHHH
Q ss_conf 688699999999879829994210000078520016447587-----9998484679998862001363000415-8999
Q gi|255764510|r 9 IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYG-----AIAITSSESLSTLPANFCRHTPIFAIGE-ASAC 82 (232)
Q Consensus 9 ~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d-----~iiftS~~av~~~~~~~~~~~~~~~vg~-~t~~ 82 (232)
.+.+..|.+.|++.++.-+.. +-+-.--|..+.....++|| --||||-=|.--.+.....+..+|++|+ +..+
T Consensus 19 I~ea~~FV~~L~kr~~pYLFV-TNNstrtPe~Va~~L~snfdipat~e~VfT~smAta~y~~~~k~~~~vyViGEeGl~e 97 (251)
T TIGR01457 19 IEEAVEFVKELKKRDVPYLFV-TNNSTRTPESVAELLASNFDIPATKEQVFTASMATADYLADLKKEKSVYVIGEEGLKE 97 (251)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-ECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 167899999886479863687-2788888179999987516899972102344789999998328802899982367899
Q ss_pred HHHHHCCCCC
Q ss_conf 9764101223
Q gi|255764510|r 83 LARQKGFTQI 92 (232)
Q Consensus 83 ~~~~~~~~~~ 92 (232)
++++.|....
T Consensus 98 aike~G~~~~ 107 (251)
T TIGR01457 98 AIKEAGLVVD 107 (251)
T ss_pred HHHHCCCEEC
T ss_conf 9986687323
No 139
>PRK03094 hypothetical protein; Provisional
Probab=40.94 E-value=25 Score=15.25 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH
Q ss_conf 688699999999879829994210000078520016447587999848467
Q gi|255764510|r 9 IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES 59 (232)
Q Consensus 9 ~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a 59 (232)
++......+.|++.|++++.+- ...+...+|++|+|-...
T Consensus 7 E~~Ls~v~~~L~~~GY~Vv~l~-----------~~~~a~~~Da~ViTG~d~ 46 (80)
T PRK03094 7 ENSLTDVQQALKQKGYEVVTLN-----------SEQDAQGCDCCVVTGQDS 46 (80)
T ss_pred CCCCHHHHHHHHHCCCEEEECC-----------CCCCCCCCCEEEEECCCC
T ss_conf 2672599999997798789668-----------714335678899958976
No 140
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=40.87 E-value=25 Score=15.25 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEE----------ECCEEEECCCCCCCCC----CCCCCCEEEEECHHHHHHHH-HHHC---C
Q ss_conf 968869999999987982999----------4210000078520016----44758799984846799988-6200---1
Q gi|255764510|r 8 PIKKALRTQEKIQKMGYIPVM----------MPLSYFIHDRESVFLA----MQQSYGAIAITSSESLSTLP-ANFC---R 69 (232)
Q Consensus 8 p~~~a~~~~~~L~~~G~~~i~----------~Pli~i~~~~~~~~~~----~~~~~d~iiftS~~av~~~~-~~~~---~ 69 (232)
|.+-|...-..|.+.|+.++. .|++..|-.++-..+. .-..|+.+|+|++|.--... ..+. +
T Consensus 89 p~~~A~~~E~~la~~G~~VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G~ivtNPNC~t~~lTl~LkPl~d 168 (358)
T TIGR00978 89 PSEVAEEVEPKLAEEGIIVFSNASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKGFIVTNPNCTTAGLTLALKPLID 168 (358)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 97999999999985698898768477888886778333561479999854001688617995761678877610134643
Q ss_pred CCCEECCCHHHHHHHHHHCCC
Q ss_conf 363000415899997641012
Q gi|255764510|r 70 HTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 70 ~~~~~~vg~~t~~~~~~~~~~ 90 (232)
..-+--|--.|-+|.-..|+.
T Consensus 169 ~~~~~~V~v~TmQAvSGAGY~ 189 (358)
T TIGR00978 169 AFGIKKVIVTTMQAVSGAGYP 189 (358)
T ss_pred CCCCCEEEEEEECCHHCCCCC
T ss_conf 058456999872000148888
No 141
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=40.54 E-value=25 Score=15.22 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=63.5
Q ss_pred CCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHH---CCCCCCCCCCC----HHHHHHHHHHHHHCCCCCC
Q ss_conf 7587999--8484679998862001363000415899997641---01223544454----5678999864220127775
Q gi|255764510|r 47 QSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQK---GFTQIFHGKDN----SINLAKIIVEQKVLFTPQK 117 (232)
Q Consensus 47 ~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~---~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~ 117 (232)
.+.+.|+ ++|..+.-........+.++...+..+....... +....+..... .......+........+.+
T Consensus 66 ~~V~~iiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~lt~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~~~~~g~k 145 (344)
T cd06345 66 DKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFK 145 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99708746768578899999999869549980788804205776667855886168807999999999999876516974
Q ss_pred EEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEE-ECHHHHHHHHHHCCHHHC
Q ss_conf 38972156-----756201468984698256768875046899988999862-37838998-078999999971354405
Q gi|255764510|r 118 PLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILF-YARSSVLYFFSLPLPAKI 190 (232)
Q Consensus 118 ~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f-~S~~~v~~~~~~~~~~~~ 190 (232)
++.++..+ .....+.+.+++.|++|....-|..-. .+....+..+. .++|+|++ ..+.....|.+.+...+.
T Consensus 146 ~vav~~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~D~s~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~g~ 224 (344)
T cd06345 146 TAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDT-TDFTPILQQIKAADPDVIIAGFSGNVGVLFTQQWAEQKV 224 (344)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9999960724559999999999875397599999658976-454999999986599999990674369999999997599
No 142
>pfam11731 Cdd1 Pathogenicity locus. Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=40.27 E-value=14 Score=16.68 Aligned_cols=34 Identities=12% Similarity=-0.075 Sum_probs=18.1
Q ss_pred ECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 7188999999976996699879999889999986
Q gi|255764510|r 196 CLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 196 ~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232)
-||+.+|+-+..+|+..+.--..-+.+.|.+.|+
T Consensus 19 nIG~a~a~DL~~LGi~~~~~L~g~dp~elY~~lc 52 (92)
T pfam11731 19 NIGKATAKDLRLLGINSPAQLAGRDPLELYERLC 52 (92)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHH
T ss_conf 7469999999991899899991799999999999
No 143
>LOAD_surE consensus
Probab=39.99 E-value=26 Score=15.17 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=22.2
Q ss_pred CEEEEECC----HHHHHHHHHHHHHCCCCEEE-EC
Q ss_conf 93898589----68869999999987982999-42
Q gi|255764510|r 1 MYIVITRP----IKKALRTQEKIQKMGYIPVM-MP 30 (232)
Q Consensus 1 M~ilitRp----~~~a~~~~~~L~~~G~~~i~-~P 30 (232)
||||+|=. .+.-..+.+.|.+.|++++. .|
T Consensus 1 M~ILlTNDDGi~a~Gl~aL~~~l~~~g~~V~vvAP 35 (192)
T LOAD_surE 1 MRILVTNDDGIDSPGIRALAEALKEEGAEVTVVAP 35 (192)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 96999837988888899999999878996999877
No 144
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.61 E-value=26 Score=15.13 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=63.9
Q ss_pred CEEEEECCCCCCCCHHHHHHHCCCEEEEEE---------------EEEECCCCCCHHHHHHH-HCCCCEEE--EECHHHH
Q ss_conf 538972156756201468984698256768---------------87504689998899986-23783899--8078999
Q gi|255764510|r 117 KPLIYLGGKPRNFHFEDYLIEHKIPLRVID---------------CYYSQDIAYPETTMKNL-LQNADAIL--FYARSSV 178 (232)
Q Consensus 117 ~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~---------------vY~~~~~~~~~~~~~~~-~~~~d~i~--f~S~~~v 178 (232)
+++++.........+.+.|++.|.++.-+. +|.= .....+.+..+ .++...++ +.++...
T Consensus 418 ~hvii~G~Gr~G~~va~~L~~~~~~~vvid~d~~~v~~~~~~g~~v~~G--Da~~~~~L~~agi~~A~~vvit~~d~~~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLASGIPLVVIETSRTRVDELRERGIRAVLG--NAANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEE--CCCCHHHHHHCCCCCCCEEEEEECCHHHH
T ss_conf 9989989886699999999987998899989899999999689979997--89988999857913249999981988999
Q ss_pred HHHHHHCCHHHCCEEEE--ECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 99997135440580399--7188999999976996699879999889999986
Q gi|255764510|r 179 LYFFSLPLPAKISAAFL--CLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 179 ~~~~~~~~~~~~~~~~~--~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232)
....+.....+.+..++ |-...-++.+++.|...++..+.-.-.+|.+.|.
T Consensus 496 ~~iv~~~r~~~p~~~IiaRa~~~~~~~~L~~aGA~~VV~~~~e~a~~m~e~l~ 548 (558)
T PRK10669 496 GEIVASAREKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLE 548 (558)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHC
T ss_conf 99999999878698699997989999999977999898937899999999857
No 145
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=38.58 E-value=27 Score=15.03 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=96.3
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf 999999998798299942100000785-20016447587999848467999-8862001363000415899997641012
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASACLARQKGFT 90 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232)
..+...++++|+.++....-.-..... -.....-...|++|+.+...-.. .......+.|+..++.... .....
T Consensus 19 ~~ie~~~~~~Gy~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~iPvV~idr~~~----~~~~~ 94 (264)
T cd06274 19 KRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDDPYYLCQKAGLPVVALDRPGD----PSRFP 94 (264)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC----CCCCC
T ss_conf 99999999869989999389998999999999996699879976788987999999975998899850589----89997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHH
Q ss_conf 2354445456789998642201277753897215675620-------146898469825676887504689998-89998
Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKN 162 (232)
Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~ 162 (232)
.+.. +....+..+.++.. ..+.+++.++.|...... +.+.++++|..+....+|......... .....
T Consensus 95 ~V~~---Dn~~~~~~a~~~L~-~~Ghr~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~i~~~~~~~~~g~~~~~~ 170 (264)
T cd06274 95 SVVS---DNRDGAAELTRELL-AAPPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYSPESGYQLMAE 170 (264)
T ss_pred EEEE---CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 8997---66999999999999-8599669997689877309999999999999779987740798268887899999999
Q ss_pred HH---CC-CCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCC
Q ss_conf 62---37-838998078999999971354405----80399718899999997699
Q gi|255764510|r 163 LL---QN-ADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYK 210 (232)
Q Consensus 163 ~~---~~-~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~ 210 (232)
++ .. +++|+.++-..+...++.+...+. ++.++++...--...-.-.+
T Consensus 171 ~l~~~~~~p~ai~~~nd~~a~g~l~~l~~~g~~vP~disvvgfDd~~~a~~~~p~L 226 (264)
T cd06274 171 LLARLGRLPRALFTTSYTLLEGVLRFLRERPGLAPSDLRIATFDDHPLLDFLPFPV 226 (264)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHCCCCC
T ss_conf 99865688742201769999999999998599999987999989868997379997
No 146
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=38.10 E-value=28 Score=14.99 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=32.6
Q ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 03997188999999976996699879999889999986
Q gi|255764510|r 192 AAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 192 ~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232)
+....||..-++.+.+.|..++-+......+.+++.|+
T Consensus 65 v~~~~IG~~aa~~L~~~gI~Pik~~~~~~I~~~l~~lq 102 (102)
T cd00853 65 LYCAAIGGPAAARLVRAGIHPIKVPEGEPIAELLEELQ 102 (102)
T ss_pred EEECCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHC
T ss_conf 99812396599999984998966699971999998519
No 147
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=37.25 E-value=29 Score=14.90 Aligned_cols=213 Identities=13% Similarity=0.060 Sum_probs=95.1
Q ss_pred HHHHHHHHCCCCEEE---ECCEEEECCCC--CCCCCCCCCCCEEEEEC-HHHH-HHHHHHH-CCCCCEECCCHHHHHHHH
Q ss_conf 999999987982999---42100000785--20016447587999848-4679-9988620-013630004158999976
Q gi|255764510|r 14 RTQEKIQKMGYIPVM---MPLSYFIHDRE--SVFLAMQQSYGAIAITS-SESL-STLPANF-CRHTPIFAIGEASACLAR 85 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~---~Pli~i~~~~~--~~~~~~~~~~d~iiftS-~~av-~~~~~~~-~~~~~~~~vg~~t~~~~~ 85 (232)
-+..+++++|...-. .+=-+...... ........++|+||||. .... ....... ....+++...-.|....-
T Consensus 21 g~e~~a~eLGI~~ei~~~~~~~~~D~~~Q~~~le~~i~~~~D~Ii~tp~~~~~~~~I~~~~~~~~~kliv~ni~tp~~~~ 100 (280)
T cd06303 21 SFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLASGKTKIILQNITTPVKAW 100 (280)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf 99999998499869988147887479999999999985379989991680566778999997489958999478861234
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCCEEEEECCCCCCC------CHHHHHHHCCCEEEEEEEEEECCCCCCHH
Q ss_conf 410122354445456789998642-20127775389721567562------01468984698256768875046899988
Q gi|255764510|r 86 QKGFTQIFHGKDNSINLAKIIVEQ-KVLFTPQKPLIYLGGKPRNF------HFEDYLIEHKIPLRVIDCYYSQDIAYPET 158 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~~vl~~~g~~~~~------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~ 158 (232)
............ ....++++.+. ....++++++.++.|..+.. -+.+.+.++. .++-+..+..........
T Consensus 101 ~~~~p~~yvg~D-n~~gg~~~a~~l~~~lg~~g~vail~g~~g~~s~~R~~GF~~~~~~~~-~i~iv~~~~~~~~r~~a~ 178 (280)
T cd06303 101 LKHQPLLYVGFD-HAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFIDCVHARN-NWTLTSEFYTDATRQKAY 178 (280)
T ss_pred HCCCCCEEECCC-HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHH
T ss_conf 046875587076-399999999999997599975999967887427789988999998689-967998852776689999
Q ss_pred -HHHHHH-C--CCCEEEEECHHHHHHHHHHCCHHHC--CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHHH--HHHH
Q ss_conf -999862-3--7838998078999999971354405--8039971--889999999769966998799998899--9998
Q gi|255764510|r 159 -TMKNLL-Q--NADAILFYARSSVLYFFSLPLPAKI--SAAFLCL--SNNIASAIPASYKNVVTVACFPKETSL--LKLL 228 (232)
Q Consensus 159 -~~~~~~-~--~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~l--l~al 228 (232)
....++ . ++++|.=.+-..+..-.+.+...+. ++.++.+ ++..-++++ .|.=...|+.-+++.++ -+||
T Consensus 179 ~~a~~~L~~~Pdi~~I~a~nd~mAlGa~~Al~~ag~~~~i~vvG~dg~~~~l~ai~-~G~l~aTv~r~~dd~g~~~aeai 257 (280)
T cd06303 179 QATSDILSNNPDVDFIYACSTDIALGASDALKELGREDDILINGWGGGSAELDAIQ-QGELDVTVMRMNDDTGVAMAEAI 257 (280)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99999998698930999789457899999999739878879997279999999998-49985898402664219999999
Q ss_pred H
Q ss_conf 6
Q gi|255764510|r 229 P 229 (232)
Q Consensus 229 ~ 229 (232)
.
T Consensus 258 k 258 (280)
T cd06303 258 K 258 (280)
T ss_pred H
T ss_conf 9
No 148
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.08 E-value=27 Score=15.01 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=9.9
Q ss_pred CCHHHHHHHCCCEEEEEEEEE
Q ss_conf 201468984698256768875
Q gi|255764510|r 129 FHFEDYLIEHKIPLRVIDCYY 149 (232)
Q Consensus 129 ~~l~~~L~~~g~~v~~~~vY~ 149 (232)
.++...++++|+++..+.+|.
T Consensus 16 a~va~i~~~~~iNI~Sv~vyp 36 (72)
T cd04883 16 ADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred HHHHHHHHHCCCCEEEEEEEE
T ss_conf 999999997597589999841
No 149
>PRK07588 hypothetical protein; Provisional
Probab=37.07 E-value=29 Score=14.89 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=37.6
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH
Q ss_conf 93898589688699999999879829994210000078520016447587999848467999886
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPA 65 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~ 65 (232)
|||+|.=-..-+..+|-.|.+.|+++..+ +-. ..+.....-|-.++|+++.+..
T Consensus 1 mkVlIvGaGiaGLalA~~L~r~G~~v~V~---Er~--------~~~r~~G~~i~l~~~~~~vl~~ 54 (391)
T PRK07588 1 MKIAISGAGIAGATLAHWLQRTGHEPTLI---ERA--------PKLRTGGYMVDFWGVGYEVAKR 54 (391)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEE---ECC--------CCCCCCCEEEEECCHHHHHHHH
T ss_conf 97999993289999999998689998999---038--------9888773387238399999998
No 150
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=36.66 E-value=29 Score=14.85 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=45.0
Q ss_pred CCEEEEECCCCCCCCH-------H-HHHHHCC--CEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-----HHHH
Q ss_conf 7538972156756201-------4-6898469--8256768875046899988999862378389980789-----9999
Q gi|255764510|r 116 QKPLIYLGGKPRNFHF-------E-DYLIEHK--IPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-----SVLY 180 (232)
Q Consensus 116 ~~~vl~~~g~~~~~~l-------~-~~L~~~g--~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-----~v~~ 180 (232)
.++|+|+-+..++..+ . +-++..| -.+..+.=|+ | ...+.+.+ .++|+|+.+|.. ....
T Consensus 178 ~~~Vlfvls~~Gg~~~vaG~~t~ad~iI~lAGG~~a~~~~~~yK--p--ls~EAlia--a~PDvivm~~r~~~~~gg~d~ 251 (300)
T COG4558 178 PKKVLFVLSHGGGAPLVAGKGTAADAIIELAGGVNAAAGIEGYK--P--LSAEALIA--ANPDVIVMMSRGLDGDGGADE 251 (300)
T ss_pred CCEEEEEEECCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCC--C--CCHHHHHH--CCCCEEEEECCCCCCCCCHHH
T ss_conf 64189999458873476057740789998626754445544566--4--68878863--399789992577666564777
Q ss_pred HHHHCC----HHHCC--------EEEEECCHHHHHHHHHC
Q ss_conf 997135----44058--------03997188999999976
Q gi|255764510|r 181 FFSLPL----PAKIS--------AAFLCLSNNIASAIPAS 208 (232)
Q Consensus 181 ~~~~~~----~~~~~--------~~~~~ig~~tA~~~~~~ 208 (232)
++++.. +...+ ...+-+|++|.+.+.++
T Consensus 252 L~~~PgiA~TpAgknkrli~~D~~~llgfGprtpe~l~~L 291 (300)
T COG4558 252 LFALPGIAQTPAGKNKRLITVDGNLLLGFGPRTPEVLLRL 291 (300)
T ss_pred HHHCCCCCCCCCCCCCCEEEECCCCEEEECCCCHHHHHHH
T ss_conf 7628430148411377389987974575277878999999
No 151
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=36.08 E-value=30 Score=14.79 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=7.2
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 6999999998798299
Q gi|255764510|r 12 ALRTQEKIQKMGYIPV 27 (232)
Q Consensus 12 a~~~~~~L~~~G~~~i 27 (232)
+.++...++++|++.+
T Consensus 55 S~~T~~~a~~~Gi~l~ 70 (222)
T PRK00702 55 SEASTELAKELGIPVF 70 (222)
T ss_pred CHHHHHHHHHCCCEEE
T ss_conf 6999999998798686
No 152
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=36.03 E-value=30 Score=14.79 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=33.1
Q ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 93898589688-699999999879829994210000078520016447587999848
Q gi|255764510|r 1 MYIVITRPIKK-ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232)
Q Consensus 1 M~ilitRp~~~-a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232)
||||+.=-..+ ...+++.|++.|.++...+--++.+ ........+||.||+.-
T Consensus 1 MrILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~---~~~~~~~~~~dgIILSp 54 (221)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRL---ADEAAVAAGFDGVLLSP 54 (221)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCH---HHHHHHHCCCCEEEECC
T ss_conf 9799993889339999999987799189998998998---89987634899899969
No 153
>PRK09739 hypothetical protein; Provisional
Probab=35.99 E-value=30 Score=14.78 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=31.8
Q ss_pred CEEEEEC--CHHHH------HHHHHHHHHCCCCEEEECCEEEEC--CC----------------CCC--CCCCCCCCCEE
Q ss_conf 9389858--96886------999999998798299942100000--78----------------520--01644758799
Q gi|255764510|r 1 MYIVITR--PIKKA------LRTQEKIQKMGYIPVMMPLSYFIH--DR----------------ESV--FLAMQQSYGAI 52 (232)
Q Consensus 1 M~ilitR--p~~~a------~~~~~~L~~~G~~~i~~Pli~i~~--~~----------------~~~--~~~~~~~~d~i 52 (232)
|||||.= |.+++ +.+++.+++.|.++-..=|.+... .- +++ ....+...|.|
T Consensus 4 kkiLIV~aHP~~~S~~~ala~~~~~~l~~~GheV~v~DLy~~~FdP~l~~~d~~~~~~~~~~~~~dv~~eq~~L~~AD~l 83 (201)
T PRK09739 4 ERIYLVWAHPRHDSLTAKVADAIHQRAQERGIQVTELDLYRRGFDPVLTPEDEPDWKNMDKRYSPEVHQLYSELLEHDAL 83 (201)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE
T ss_conf 77999973899865689999999999998799599997130269966583312132234567878899999999867979
Q ss_pred EEECHH
Q ss_conf 984846
Q gi|255764510|r 53 AITSSE 58 (232)
Q Consensus 53 iftS~~ 58 (232)
||..|-
T Consensus 84 VfvfPl 89 (201)
T PRK09739 84 VVVFPL 89 (201)
T ss_pred EEECCH
T ss_conf 998745
No 154
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=35.98 E-value=30 Score=14.78 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHH
Q ss_conf 127775389721567562-------0146898469825676887504689998-8999862---3783899807899999
Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLY 180 (232)
Q Consensus 112 ~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~ 180 (232)
...+.+++.|++|..... -+.+.|+++|..+....++...+..... ..+..++ ..+++|+.+|-..+-.
T Consensus 172 ~~~Ghr~Ia~i~~~~~~~~~~~R~~g~~~al~~~gl~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~tAi~~~nD~~A~g 251 (342)
T PRK10727 172 IQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVACYNDSMAAG 251 (342)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEECCHHHHHH
T ss_conf 97499759999689888359999999999999769999820588157877889999999985599977415546999999
Q ss_pred HHHHCCHHHC----CEEEEECCHHHHHHHHHCCCCE
Q ss_conf 9971354405----8039971889999999769966
Q gi|255764510|r 181 FFSLPLPAKI----SAAFLCLSNNIASAIPASYKNV 212 (232)
Q Consensus 181 ~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~~ 212 (232)
.++.+...+. ++.++++...-....-.-.+..
T Consensus 252 ~l~al~~~Gl~VP~DisViGfDd~~~~~~~~P~LTT 287 (342)
T PRK10727 252 AMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTT 287 (342)
T ss_pred HHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCCCEE
T ss_conf 999999829999998699988971898648899858
No 155
>TIGR00060 L18_bact ribosomal protein L18; InterPro: IPR004389 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This is the ribosomal protein L18 family. The archaebacterial and eukaryotic type rpL18 is not included in this family.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=35.95 E-value=30 Score=14.78 Aligned_cols=92 Identities=10% Similarity=-0.060 Sum_probs=46.1
Q ss_pred HHHHHCC-CEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHH-HCCHHHCCEEEEECCHHHHHHHHHCCC
Q ss_conf 6898469-82567688750468999889998623783899807899999997-135440580399718899999997699
Q gi|255764510|r 133 DYLIEHK-IPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFS-LPLPAKISAAFLCLSNNIASAIPASYK 210 (232)
Q Consensus 133 ~~L~~~g-~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~-~~~~~~~~~~~~~ig~~tA~~~~~~g~ 210 (232)
..|+..| ....++.|+++...- ... .+......+++|.|+++--+. .+.-.+..-..-.+|..+|+.+.+.|.
T Consensus 14 ~kl~~~~~~~rprl~VfrS~~hi--YAQ---vIDd~~~~tlas~Stl~~~l~~~~~~~~n~~~a~~vG~~~A~rl~~kgi 88 (118)
T TIGR00060 14 KKLRGTGEANRPRLVVFRSNRHI--YAQ---VIDDVKQVTLASASTLEKKLKEQLKSTGNKDAAKKVGKLVAERLIKKGI 88 (118)
T ss_pred HHHHHCCCCCCCEEEEEEECCCE--EEE---EEECCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99862142568368998616817--899---9985888478731556688776510378988999999999999997277
Q ss_pred CEEEE-CCCCCHHHHHHHHH
Q ss_conf 66998-79999889999986
Q gi|255764510|r 211 NVVTV-ACFPKETSLLKLLP 229 (232)
Q Consensus 211 ~~~~v-a~~p~~~~ll~al~ 229 (232)
+.++. -..---.+.++||+
T Consensus 89 ~~vvFDR~G~~YHGrv~ALA 108 (118)
T TIGR00060 89 NDVVFDRGGYKYHGRVAALA 108 (118)
T ss_pred CEEEEECCCCCHHHHHHHHH
T ss_conf 22685269962233899999
No 156
>KOG3107 consensus
Probab=35.74 E-value=30 Score=14.76 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=36.5
Q ss_pred CHHHCCEEEEECCH--HHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 54405803997188--9999999769966998799998899999861
Q gi|255764510|r 186 LPAKISAAFLCLSN--NIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232)
Q Consensus 186 ~~~~~~~~~~~ig~--~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232)
...+.+..++|||. -.+.+++++.+....+..++|.++|..||..
T Consensus 419 ~RFg~K~~yvvIgdG~eee~aAK~ln~PfwrI~~h~Dl~~l~~aL~~ 465 (468)
T KOG3107 419 SRFGRKVVYVVIGDGVEEEQAAKALNMPFWRISSHSDLDALYSALEL 465 (468)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCC
T ss_conf 98678459999668678778888617865761367348887530152
No 157
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=35.14 E-value=31 Score=14.70 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=24.1
Q ss_pred CEEEEEC-CHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9389858-96886999999998798299942
Q gi|255764510|r 1 MYIVITR-PIKKALRTQEKIQKMGYIPVMMP 30 (232)
Q Consensus 1 M~ilitR-p~~~a~~~~~~L~~~G~~~i~~P 30 (232)
|+|+||= |.-.-...+..|.++|++++++-
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~ 31 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRELGYKVIELN 31 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEHH
T ss_conf 9379937999866879999998298466199
No 158
>KOG0333 consensus
Probab=34.67 E-value=31 Score=14.65 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=39.8
Q ss_pred CCEEEEEC--HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 87999848--4679998862001363000415899997641012235444545678999864220127775389721567
Q gi|255764510|r 49 YGAIAITS--SESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKP 126 (232)
Q Consensus 49 ~d~iiftS--~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~ 126 (232)
+..+.||- +-+|+.+...+.+..-+..+|......-.-...............+.+.+.. .....-++|.--..
T Consensus 453 rqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~----~~~ppiIIFvN~kk 528 (673)
T KOG0333 453 RQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILES----NFDPPIIIFVNTKK 528 (673)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHEEEEEECCHHHHHHHHHHHHH----CCCCCEEEEEECHH
T ss_conf 57899844787679999999852776999546789860211178881556889999999984----79998799983132
Q ss_pred CCCCHHHHHHHCCCEEEEE
Q ss_conf 5620146898469825676
Q gi|255764510|r 127 RNFHFEDYLIEHKIPLRVI 145 (232)
Q Consensus 127 ~~~~l~~~L~~~g~~v~~~ 145 (232)
+-+.+.+.|.+.|+++.++
T Consensus 529 ~~d~lAk~LeK~g~~~~tl 547 (673)
T KOG0333 529 GADALAKILEKAGYKVTTL 547 (673)
T ss_pred HHHHHHHHHHHCCCEEEEE
T ss_conf 4899999986443247996
No 159
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=34.50 E-value=32 Score=14.64 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=4.3
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999999879829
Q gi|255764510|r 15 TQEKIQKMGYIP 26 (232)
Q Consensus 15 ~~~~L~~~G~~~ 26 (232)
+...++++|+++
T Consensus 54 T~~~~~~~Gi~v 65 (213)
T cd01398 54 TEELARELGIPL 65 (213)
T ss_pred HHHHHHHCCCCE
T ss_conf 999999879974
No 160
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=34.36 E-value=24 Score=15.40 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=17.1
Q ss_pred CCCEEEEECHHHHHHHHHHH
Q ss_conf 58799984846799988620
Q gi|255764510|r 48 SYGAIAITSSESLSTLPANF 67 (232)
Q Consensus 48 ~~d~iiftS~~av~~~~~~~ 67 (232)
.||+||+-||.|++..|.+.
T Consensus 113 ~FDYviIDcPAGIE~GF~nA 132 (272)
T TIGR01968 113 HFDYVIIDCPAGIESGFRNA 132 (272)
T ss_pred CCEEEEEECCCCHHHHHHHH
T ss_conf 93079973787743568998
No 161
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=33.86 E-value=32 Score=14.57 Aligned_cols=202 Identities=9% Similarity=0.060 Sum_probs=92.3
Q ss_pred HHHHHCCCCEEEECCE---EEECCCCCCCCCCCCCCCEEEEECH--HHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf 9999879829994210---0000785200164475879998484--6799988620013630004158999976410122
Q gi|255764510|r 17 EKIQKMGYIPVMMPLS---YFIHDRESVFLAMQQSYGAIAITSS--ESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232)
Q Consensus 17 ~~L~~~G~~~i~~Pli---~i~~~~~~~~~~~~~~~d~iiftS~--~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232)
+.-.++|+++.....- +...--..+.......+|+||++.. +++..........+|+.++.......... ..
T Consensus 23 ~aA~e~G~~v~~~~~~~~~d~~~Qi~~ie~~i~~gvDaIii~p~d~~al~~~~~a~~agIPVV~~d~~i~~~~~~---~~ 99 (268)
T cd06306 23 EEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIALVNDINSPDIT---AK 99 (268)
T ss_pred HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---EE
T ss_conf 999996997999958999999999999999998399999986798677789999998698299994577875540---36
Q ss_pred CCCC-CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf 3544-4545678999864220127775389721567562-------014689846982567688750468999-889998
Q gi|255764510|r 92 IFHG-KDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232)
Q Consensus 92 ~~~~-~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232)
+... ...+...++.+........+...+.++.|..... -+.+.|...++.+. ..+........ ......
T Consensus 100 v~~dn~~~G~~~ge~l~~~~~~~g~~~~v~i~~g~~~~~~~~~R~~Gf~~~l~~~~~~iv--~~~~~~~~~~~a~~~~~~ 177 (268)
T cd06306 100 VGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEIS--AIKYGDTGKEVQRKLVEE 177 (268)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE--EEECCCCCHHHHHHHHHH
T ss_conf 751727999999999998515039953999996797762999999889998832895488--873178749999999999
Q ss_pred HHC---CCCEEEEECHHHHHHHHHHCCHHHC--CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 623---7838998078999999971354405--8039971--8899999997699669987999988999
Q gi|255764510|r 163 LLQ---NADAILFYARSSVLYFFSLPLPAKI--SAAFLCL--SNNIASAIPASYKNVVTVACFPKETSLL 225 (232)
Q Consensus 163 ~~~---~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ll 225 (232)
++. .+|+| |....++..-...+..... ++.++.+ .+.+.++++ .|.-...+.+.|...+-+
T Consensus 178 ~L~~~pdi~~i-~~~~~~a~~a~~a~~~~g~~~~v~vvg~d~~~~~~~~i~-~G~i~atv~Q~p~~~G~~ 245 (268)
T cd06306 178 ALEAHPDIDYI-VGSAVAAEAAVGILRQRGLTDQIKIVSTYLSHAVYRGLK-RGKILAAPTDSMVLQGRL 245 (268)
T ss_pred HHHHCCCCCEE-EECCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH-CCCEEEEEECCHHHHHHH
T ss_conf 98629998899-957467999999998607799759999369989999998-598379995699999999
No 162
>PRK13663 hypothetical protein; Provisional
Probab=33.76 E-value=33 Score=14.56 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=23.7
Q ss_pred EEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECC
Q ss_conf 89858--968869999999987982999421000007
Q gi|255764510|r 3 IVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHD 37 (232)
Q Consensus 3 ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~ 37 (232)
|+||| ..+.+..|..+|++.|+.+..+=.++-.|.
T Consensus 111 VVITqy~~qpaa~~F~~~Le~~gIkvy~Hy~i~GYP~ 147 (493)
T PRK13663 111 VVITQYEGQPAADAFRNKLERRGIKVYLHYPIKGYPT 147 (493)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 9986258985799999999877970698446688887
No 163
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=33.64 E-value=33 Score=14.55 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=23.7
Q ss_pred CEEEEECCH-HHHHHHHHHHHHCCCCEEEE
Q ss_conf 938985896-88699999999879829994
Q gi|255764510|r 1 MYIVITRPI-KKALRTQEKIQKMGYIPVMM 29 (232)
Q Consensus 1 M~ilitRp~-~~a~~~~~~L~~~G~~~i~~ 29 (232)
||||||=-. .=+...+..|.+.|++++..
T Consensus 1 mnVlITGas~GIG~aiA~~la~~Ga~V~i~ 30 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVIS 30 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 989997587789999999999879999999
No 164
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=33.30 E-value=33 Score=14.52 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 999999987982999421
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPL 31 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pl 31 (232)
...+.+++.|+++-.+-+
T Consensus 21 ~~~~~l~~~g~~~~~idl 38 (171)
T TIGR03567 21 HVREALQEQGVEVDHLSV 38 (171)
T ss_pred HHHHHHHHCCCEEEEEEC
T ss_conf 999999875996998433
No 165
>pfam08903 DUF1846 Domain of unknown function (DUF1846). This family of proteins are functionally uncharacterized. Some members of the family are annotated as ATP-dependent peptidases. However, we can find no support for this annotation.
Probab=33.10 E-value=33 Score=14.50 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=22.8
Q ss_pred EEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECC
Q ss_conf 89858--968869999999987982999421000007
Q gi|255764510|r 3 IVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHD 37 (232)
Q Consensus 3 ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~ 37 (232)
|+||| ..+.+..|..+|+++|+.+..+=.|+-.|.
T Consensus 110 VVITqy~~qp~a~~F~~~Le~~GIkvy~Hy~i~GYP~ 146 (491)
T pfam08903 110 VVITQYSGQPAADLFKNRLERLGIKVYLHYPIPGYPT 146 (491)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 9987048985799999999977981798457688888
No 166
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=33.03 E-value=34 Score=14.49 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=46.3
Q ss_pred CCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCC-CHHHHHHHH-CCCCEEE-EECHHHHHHHHHHC
Q ss_conf 7775389721567-----56201468984698256768875046899-988999862-3783899-80789999999713
Q gi|255764510|r 114 TPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAY-PETTMKNLL-QNADAIL-FYARSSVLYFFSLP 185 (232)
Q Consensus 114 ~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~-~~~~~~~~~-~~~d~i~-f~S~~~v~~~~~~~ 185 (232)
.+-++|.++..+. ..+.+.+.|++.|+.|.....|....... ....+..+. .+.++|+ .+++..++.++...
T Consensus 133 ~gw~~vail~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~d~~~~L~~ik~~~~~viv~~~~~~~a~~i~~qA 212 (350)
T cd06366 133 FGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEA 212 (350)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 69969999997680048999999999998799899999746899743699999997437998899978889999999999
Q ss_pred CHHHC
Q ss_conf 54405
Q gi|255764510|r 186 LPAKI 190 (232)
Q Consensus 186 ~~~~~ 190 (232)
...++
T Consensus 213 ~~lgm 217 (350)
T cd06366 213 YKLGM 217 (350)
T ss_pred HHCCC
T ss_conf 97598
No 167
>PRK05884 short chain dehydrogenase; Provisional
Probab=32.72 E-value=34 Score=14.46 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=23.7
Q ss_pred CEEEEECCH-HHHHHHHHHHHHCCCCEEEE
Q ss_conf 938985896-88699999999879829994
Q gi|255764510|r 1 MYIVITRPI-KKALRTQEKIQKMGYIPVMM 29 (232)
Q Consensus 1 M~ilitRp~-~~a~~~~~~L~~~G~~~i~~ 29 (232)
||||||=-. .=....++.|.+.|++++..
T Consensus 1 ~~VlVTGgs~GIG~aiA~~la~~Ga~V~i~ 30 (223)
T PRK05884 1 MEVLVTGGDTDLGRTIAEGFRNDGHKVTLV 30 (223)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 939998788799999999999879999999
No 168
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.77 E-value=35 Score=14.37 Aligned_cols=167 Identities=11% Similarity=-0.021 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCCEE----CCCHHHHHHH
Q ss_conf 86999999998798299942100000785200164475879998484679998862001--36300----0415899997
Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR--HTPIF----AIGEASACLA 84 (232)
Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~~~----~vg~~t~~~~ 84 (232)
+.......|++.|++++..=+-+ ..-.++........-+.....+..++...+.+ +.|++ -.-..|.+.+
T Consensus 186 d~~~i~~lL~~mGi~V~~~~tgd----~t~~di~~~~~A~lNvv~C~~~~~~~A~~le~~yGiP~~~~~f~Gi~~T~~~L 261 (421)
T cd01976 186 DAWASRILLEEMGLRVVAQWSGD----GTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPTKIAESL 261 (421)
T ss_pred CHHHHHHHHHHCCCCEEEEEECC----CCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
T ss_conf 29999999998398379998089----97999973200769988535799999999999869896951565879999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHH----------HHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf 641012235444545678999864----------2201277753897215675620146898469825676887504689
Q gi|255764510|r 85 RQKGFTQIFHGKDNSINLAKIIVE----------QKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA 154 (232)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 154 (232)
++....-... ..+...+++.+ .......++++.+..|......+...++..|..|.-. -|+.-. .
T Consensus 262 r~IA~~fG~e---l~~~~E~lI~~e~~~~~~~l~~yr~~L~GKrv~i~~Gg~~~~~~i~~~~eLGmevV~~-g~~~~~-~ 336 (421)
T cd01976 262 RKIAAYFDDE---ITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGT-GYEFAH-R 336 (421)
T ss_pred HHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE-EEECCC-H
T ss_conf 9999985908---8899999999999999999999998708988999899874689999999879889997-312274-7
Q ss_pred CCHHHHHHHHCCCCEEEEEC--HHHHHHHHHHCCH
Q ss_conf 99889998623783899807--8999999971354
Q gi|255764510|r 155 YPETTMKNLLQNADAILFYA--RSSVLYFFSLPLP 187 (232)
Q Consensus 155 ~~~~~~~~~~~~~d~i~f~S--~~~v~~~~~~~~~ 187 (232)
+..+...... +.+.+++-. +..+..+++...+
T Consensus 337 ~Dye~~~~~~-~~~~~iidd~~~~Ele~~i~~~~p 370 (421)
T cd01976 337 DDYERTEVIP-KEGTLLYDDVTHYELEEFVKRLKP 370 (421)
T ss_pred HHHHHHHHHC-CCCCEEEECCCHHHHHHHHHHCCC
T ss_conf 6799998508-988289727999999999985399
No 169
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=31.38 E-value=36 Score=14.33 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=26.1
Q ss_pred CCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 7775389721567562----0146898469825676887504
Q gi|255764510|r 114 TPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQ 151 (232)
Q Consensus 114 ~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~ 151 (232)
...++|+++||.+-+. .+...|..+|++|.-+.++...
T Consensus 26 ~~~~~v~il~G~GNNGGDGlv~Ar~L~~~g~~V~v~~~~~~~ 67 (170)
T pfam03853 26 PAGKRVLVLCGPGNNGGDGLAAARHLAQRGYKVTVLLLNPDE 67 (170)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 778869999879987288999999999879907999967855
No 170
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=30.94 E-value=36 Score=14.28 Aligned_cols=19 Identities=5% Similarity=0.069 Sum_probs=11.7
Q ss_pred CCCCEEEEECHHHHHHHHH
Q ss_conf 7587999848467999886
Q gi|255764510|r 47 QSYGAIAITSSESLSTLPA 65 (232)
Q Consensus 47 ~~~d~iiftS~~av~~~~~ 65 (232)
.+-|-.|+...++.-.++.
T Consensus 53 ~~RDRfvLS~GH~s~~lYa 71 (333)
T pfam00456 53 PNRDRFVLSNGHASMLLYS 71 (333)
T ss_pred CCCCEEEEECCCHHHHHHH
T ss_conf 8987499967404699999
No 171
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=30.77 E-value=37 Score=14.26 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=32.1
Q ss_pred CEEEEE-CCHH--HHHHHHHHHHHCCCCEEEECCEEEEC----CCCCCC--CCCCCCCCEEEE
Q ss_conf 938985-8968--86999999998798299942100000----785200--164475879998
Q gi|255764510|r 1 MYIVIT-RPIK--KALRTQEKIQKMGYIPVMMPLSYFIH----DRESVF--LAMQQSYGAIAI 54 (232)
Q Consensus 1 M~ilit-Rp~~--~a~~~~~~L~~~G~~~i~~Pli~i~~----~~~~~~--~~~~~~~d~iif 54 (232)
|||.|. |+.. ...++.+..++.|+++..+-..++.- ...... -..+.+||+++-
T Consensus 1 mki~iLs~~~~~yst~RL~eaa~~rGh~v~vidp~~~~~~i~~~~~~v~~~g~~L~~~Davip 63 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIP 63 (300)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEHHHCEEEECCCCCEEEECCEECCCCCEEEE
T ss_conf 979999369976079999999998799599961489189824898649989808687888998
No 172
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family; InterPro: IPR006349 This family of sequences represent 2-phosphoglycolate phosphatase which is limited to the eukaryotic lineage. PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In mammals, PGP is found in many tissues, notably in red blood cells where P-glycolate is and important activator of the hydrolysis of 2,3-bisphosphoglycerate, a major modifier of the oxygen affinity of hemoglobin. The PGPase enzyme described here is a member of the Haloacid dehalogenase superfamily of hydrolase enzymes. Unlike the bacterial PGP equivalog (IPR006346 from INTERPRO), which is a member of class (subfamily) I, this enzyme is a member of class (subfamily) II . These two enzymes have almost certainly arisen from convergent evolution (although these two ancestors may themselves have diverged from a more distant HAD superfamily progenitor). One of the sequences in the group comes from Chlamydomonas reinhardtii, a photosynthetic alga. The enzyme has been purified and characterised and these data are fully consistent with the assignment of function as a PGPase involved in photorespiration . Another, from Homo sapiens, is supported as a member of the family indirectly. Biochemical characterization of partially purified PGP's from various tissues including red blood cells have been performed while one gene for PGP has been localized to chromosome 16p13.3 . The Homo sapiens sequence maps to chromosome 22. There is indeed a related gene on chromosome 16 (and it is expressed, since EST's are found) which shows 46 0dentity and 59603b08ositives by BLAST2 (E=1e-66). Presumably, these two genes are isoforms and have the same catalytic function while being expressed in different tissues and may be differently regulated. The sequence from Caenorhabditis elegans, is only supported by sequence similarity. This family is closely related to a family of bacterial sequences including the Escherichia coli NagD and Bacillus subtilus AraL genes which are characterised by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The Chlamydomonas reinhardtii PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this family have been annotated as pNPPases due to this association.; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=29.31 E-value=39 Score=14.11 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC-CCCC--CCCCCEEEEECHHHH-HHHHH----HHCCCCCEECCCHH
Q ss_conf 9688699999999879829994210000078520-0164--475879998484679-99886----20013630004158
Q gi|255764510|r 8 PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV-FLAM--QQSYGAIAITSSESL-STLPA----NFCRHTPIFAIGEA 79 (232)
Q Consensus 8 p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~~~~--~~~~d~iiftS~~av-~~~~~----~~~~~~~~~~vg~~ 79 (232)
-.+.+.++.++|.+.|-+++.+-=-.....+.-. .+.. ++...-=+|.|..++ ..|.. ......++|++|+.
T Consensus 19 v~pG~Pelld~L~~~gK~~~fvtNNstksRa~ya~kfa~LG~n~~ae~l~ssa~~aA~~L~~rlPG~~~~~k~VyviGe~ 98 (288)
T TIGR01452 19 VVPGAPELLDRLAKAGKKVLFVTNNSTKSRAEYAKKFAKLGYNSVAEELFSSALVAAALLRRRLPGAIDANKKVYVIGEE 98 (288)
T ss_pred ECCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 13787278999974598799981686410489999997517760245522678999999987377888888628997770
Q ss_pred -HHHHHHHHCCCCCCCCCC
Q ss_conf -999976410122354445
Q gi|255764510|r 80 -SACLARQKGFTQIFHGKD 97 (232)
Q Consensus 80 -t~~~~~~~~~~~~~~~~~ 97 (232)
..+.+...|......+..
T Consensus 99 Glr~Eld~~Gir~~G~p~~ 117 (288)
T TIGR01452 99 GLREELDEKGIRYVGDPSE 117 (288)
T ss_pred CHHHHHHHHCCHHCCCCCC
T ss_conf 2688998716021178860
No 173
>PRK03348 DNA polymerase IV; Provisional
Probab=28.98 E-value=39 Score=14.08 Aligned_cols=58 Identities=5% Similarity=-0.071 Sum_probs=32.3
Q ss_pred CCCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 37838998078999999971354405803997188999999976996699879999889999
Q gi|255764510|r 165 QNADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLK 226 (232)
Q Consensus 165 ~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~ 226 (232)
.++|.+..-.+..++.|+.-++-. .+.-||+++++.|...|+..+.--..-+.+.|.+
T Consensus 159 aKP~G~~vi~p~~~~~~L~~lPV~----~lwGIG~~t~~kL~~~GI~TigDLa~~~~~~L~~ 216 (456)
T PRK03348 159 AKPDGIRVVPPGEERELLAPLPVR----RLWGIGPVAEEKLHRLGIETIGDLAALSEAEVAN 216 (456)
T ss_pred CCCCCEEEECHHHHHHHHHHCCHH----HCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHH
T ss_conf 489837996888999998756574----3387759999999986981468776099999999
No 174
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.63 E-value=42 Score=13.93 Aligned_cols=203 Identities=11% Similarity=0.004 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEECC-------------CCC-CCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCC
Q ss_conf 68869999999987982999421000007-------------852-00164475879998484679998862001--363
Q gi|255764510|r 9 IKKALRTQEKIQKMGYIPVMMPLSYFIHD-------------RES-VFLAMQQSYGAIAITSSESLSTLPANFCR--HTP 72 (232)
Q Consensus 9 ~~~a~~~~~~L~~~G~~~i~~Pli~i~~~-------------~~~-~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~ 72 (232)
..+..++.++|++.|+++..+|-+.-... ... .++....+...-+..++.....+...+.+ ..|
T Consensus 168 ~~D~~eik~ll~~~Gl~v~~l~d~s~~ld~~~~~~~~~~~~ggt~~~~i~~~~~A~~ni~~~~~~~~~~a~~L~~~~giP 247 (428)
T cd01965 168 PGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVP 247 (428)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 24599999999984991698157121147766676520168998699998656599999988889999999999985998
Q ss_pred EEC----CC-HHHHHHHHHHCCCCCCCCCC-CHH---HHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEE
Q ss_conf 000----41-58999976410122354445-456---7899986422012777538972156756201468984698256
Q gi|255764510|r 73 IFA----IG-EASACLARQKGFTQIFHGKD-NSI---NLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLR 143 (232)
Q Consensus 73 ~~~----vg-~~t~~~~~~~~~~~~~~~~~-~~~---~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~ 143 (232)
... .| ..|.+.++............ ..+ ...+.+.. ......++++.+..+....--+.+.|...|..+.
T Consensus 248 ~~~~~~P~G~~~T~~~l~~la~~~g~~~~~~~~~er~r~~d~~~d-~~~~l~gkrvai~~~~~~~~~l~~~L~elG~~~~ 326 (428)
T cd01965 248 YILFPTPIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLD-SHFYLGGKRVAIAGDPDLLLGLSRFLLEMGAEPV 326 (428)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEE
T ss_conf 484377646799999999999984899559999999999999999-9986079789998881889999999998599567
Q ss_pred EEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEE
Q ss_conf 768875046899988999862378389980789999999713544058039971889999999769966998
Q gi|255764510|r 144 VIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTV 215 (232)
Q Consensus 144 ~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~v 215 (232)
.+.+....+.............+.+..++....- ..+-+.+.... .-++.-|..-...+++.|..-+.+
T Consensus 327 ~~~~~t~~~~~~~~~~~~~~~~~~~~~v~~~~D~-~~le~~i~~~~--~dliig~s~~~~~A~~l~iP~~~~ 395 (428)
T cd01965 327 AAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDL-WDLESLAKEEP--VDLLIGNSHGRYLARDLGIPLVRV 395 (428)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCH-HHHHHHHHHCC--CCEEEECHHHHHHHHHCCCCEEEE
T ss_conf 9998179924778899876650799639976999-99999997479--999997857899999859987994
No 175
>PRK08017 short chain dehydrogenase; Provisional
Probab=27.56 E-value=42 Score=13.93 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEECC-HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898589-688699999999879829994
Q gi|255764510|r 3 IVITRP-IKKALRTQEKIQKMGYIPVMM 29 (232)
Q Consensus 3 ilitRp-~~~a~~~~~~L~~~G~~~i~~ 29 (232)
+|||=- ..=+..++..|.+.|+.++..
T Consensus 5 vlITGassGIG~a~A~~la~~G~~V~~~ 32 (256)
T PRK08017 5 VLITGCSSGIGLESALELKRQGFRVLAG 32 (256)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9996587689999999999879999999
No 176
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=27.36 E-value=42 Score=13.90 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=42.5
Q ss_pred HHHHHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCC--EEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEEC-H
Q ss_conf 9864220127775389721567-----56201468984698--256768875046899988999862-3783899807-8
Q gi|255764510|r 105 IIVEQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKI--PLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYA-R 175 (232)
Q Consensus 105 ll~~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~--~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S-~ 175 (232)
.+..........+++.++..+. ....+.+.+.+.+. .+..-..|..-...+....+..+. .++|+|++.+ +
T Consensus 132 ~~a~~~~~~~~~k~vai~~~d~~~g~~~~~~~~~~~~~~~~g~~vv~~~~~p~~~~~Df~~~i~~i~~~~pd~v~~~~~~ 211 (342)
T cd06329 132 ALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWG 211 (342)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999997689976999369973769999999999998169958876785258887766999999986699999993775
Q ss_pred HHHHHHHHHCCHHHCCEEEE---ECCHHHHHHHHHC
Q ss_conf 99999997135440580399---7188999999976
Q gi|255764510|r 176 SSVLYFFSLPLPAKISAAFL---CLSNNIASAIPAS 208 (232)
Q Consensus 176 ~~v~~~~~~~~~~~~~~~~~---~ig~~tA~~~~~~ 208 (232)
...-.|.+.+...+.+..++ +.++...+.+.+.
T Consensus 212 ~~~~~~~kq~~~~g~~~~~~~~~~~~~~~~~~~g~~ 247 (342)
T cd06329 212 NDLLLLVKQAADAGLKLPFYTPYLDQPGNPAALGEA 247 (342)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 569999999997699981899707877899875664
No 177
>PRK06242 flavodoxin; Provisional
Probab=26.39 E-value=44 Score=13.80 Aligned_cols=48 Identities=13% Similarity=0.051 Sum_probs=26.1
Q ss_pred CEEEEEC-CH--HHHHHHHHHHHH-CCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf 9389858-96--886999999998-798299942100000785200164475879998484
Q gi|255764510|r 1 MYIVITR-PI--KKALRTQEKIQK-MGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232)
Q Consensus 1 M~ilitR-p~--~~a~~~~~~L~~-~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232)
||.+|+- .. ..-.+.|+.+.+ .+.+++ ++... ...++.+||.|+|-|+
T Consensus 1 MK~~IvY~S~~tGNT~KvA~aiae~l~~~~~-----~~~~~----~~~~l~~yDlI~~Gsg 52 (150)
T PRK06242 1 MKALIVYVSIHHGNTEKIAKAMAEVLNADVI-----KPTDI----SPEDLNEYDLIGFGSG 52 (150)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEE-----EECCC----CCCCCCCCCEEEECCC
T ss_conf 9689999956889799999999976597399-----74458----8343021788998352
No 178
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=26.12 E-value=44 Score=13.77 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=4.1
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999987982
Q gi|255764510|r 15 TQEKIQKMGYI 25 (232)
Q Consensus 15 ~~~~L~~~G~~ 25 (232)
+...+.++|++
T Consensus 58 t~~l~~~~GI~ 68 (227)
T COG0120 58 TEELARELGIP 68 (227)
T ss_pred HHHHHHHCCCE
T ss_conf 99999982976
No 179
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=26.03 E-value=44 Score=13.76 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=45.6
Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEEC--HHH---HHHHHHHCCHHHCCEEEEECCHHHH
Q ss_conf 01468984698256768875046899988999862--3783899807--899---9999971354405803997188999
Q gi|255764510|r 130 HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYA--RSS---VLYFFSLPLPAKISAAFLCLSNNIA 202 (232)
Q Consensus 130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S--~~~---v~~~~~~~~~~~~~~~~~~ig~~tA 202 (232)
-+...|++.|++|..+.+.. ..+.+.+.+ .++|.|-|++ ..+ +..+.+.++....++.+++-|+...
T Consensus 19 ~la~~l~~~G~~V~~~d~~~------~~~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~p~~~iv~GG~~~t 92 (121)
T pfam02310 19 YVAAALRAAGFEVILLGADV------PPEDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIRPGVKVVVGGPHPT 92 (121)
T ss_pred HHHHHHHHCCCCCCCEECCC------CHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999998599500102479------999999999980999999952321121136899999998598975998387634
Q ss_pred ---HHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf ---9999769966998799998899999
Q gi|255764510|r 203 ---SAIPASYKNVVTVACFPKETSLLKL 227 (232)
Q Consensus 203 ---~~~~~~g~~~~~va~~p~~~~ll~a 227 (232)
+.+.+.....+.+.....++++.+.
T Consensus 93 ~~p~~~l~~~~~~D~vv~GEgE~~~~~L 120 (121)
T pfam02310 93 ADPEEVLRAAPGIDDVVRGEGEDALEAL 120 (121)
T ss_pred CCHHHHHHCCCCCCEEEECCCHHHHHHH
T ss_conf 1899998408997589989768999986
No 180
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=25.95 E-value=45 Score=13.75 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=25.1
Q ss_pred CEEEEEC--HHHHHHHH---HHHCCCCCE--ECCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7999848--46799988---620013630--0041589999764101223544454
Q gi|255764510|r 50 GAIAITS--SESLSTLP---ANFCRHTPI--FAIGEASACLARQKGFTQIFHGKDN 98 (232)
Q Consensus 50 d~iiftS--~~av~~~~---~~~~~~~~~--~~vg~~t~~~~~~~~~~~~~~~~~~ 98 (232)
..+|..| .|-.+-+. ....+..++ ..-|+.-.+.+.+.|+.....+.+.
T Consensus 74 ~~lIAvSYSGNT~ETl~~~e~A~~~~~~~~aITSGG~L~e~A~e~g~~~i~iP~G~ 129 (338)
T TIGR02128 74 TLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGGKLEEMAKEEGLDVIKIPKGL 129 (338)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCEEEECCCC
T ss_conf 17999861786689999999998657955999448538863011487568828861
No 181
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=25.83 E-value=45 Score=13.74 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.3
Q ss_pred CCCCEEEEECHHHHHHHHHHH
Q ss_conf 758799984846799988620
Q gi|255764510|r 47 QSYGAIAITSSESLSTLPANF 67 (232)
Q Consensus 47 ~~~d~iiftS~~av~~~~~~~ 67 (232)
.+||||+..||.|++..+...
T Consensus 112 ~~fDyIi~DsPAGIE~G~~~A 132 (272)
T COG2894 112 MDFDYIIIDSPAGIEQGFKNA 132 (272)
T ss_pred CCCCEEEECCCCHHHHHHHHH
T ss_conf 699889964840677888865
No 182
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.64 E-value=45 Score=13.72 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=68.4
Q ss_pred CCCCEEEE--ECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCH----HHHHHHHHHHHHCC-CCCCEE
Q ss_conf 75879998--484679998862001363000415899997641012235444545----67899986422012-777538
Q gi|255764510|r 47 QSYGAIAI--TSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNS----INLAKIIVEQKVLF-TPQKPL 119 (232)
Q Consensus 47 ~~~d~iif--tS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~-~~~~~v 119 (232)
++.++|+= +|..+.-..........++...+..... +...+....+...+.. ....+.+....... .+.+++
T Consensus 69 d~V~aviG~~~S~~~~a~~~v~~~~~vp~i~~~a~~~~-lt~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v 147 (347)
T cd06340 69 EGVVALVGAYQSAVTLAASQVAERYGVPFVVDGAVSDS-ITERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTV 147 (347)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCEEEEECCCCCHH-HHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89469745767376666469998628458804868867-75378886686068838999999999999999738996399
Q ss_pred EEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEEC-HHHHHHHHHHCCHHHCCE
Q ss_conf 972156-----756201468984698256768875046899988999862-3783899807-899999997135440580
Q gi|255764510|r 120 IYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYA-RSSVLYFFSLPLPAKISA 192 (232)
Q Consensus 120 l~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S-~~~v~~~~~~~~~~~~~~ 192 (232)
.++..+ .....+.+.+++.|..+....-|..-. .+....+..+. .++|+|++.. +...-.|++.+...+...
T Consensus 148 ail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~Dfs~~l~~i~~~~pD~v~~~~~~~~~~~~~kq~~~~G~~~ 226 (347)
T cd06340 148 ALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANA-RDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEP 226 (347)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 99943876457799999999997398799999727887-76699999998669999999067627999999999769997
Q ss_pred E
Q ss_conf 3
Q gi|255764510|r 193 A 193 (232)
Q Consensus 193 ~ 193 (232)
.
T Consensus 227 ~ 227 (347)
T cd06340 227 K 227 (347)
T ss_pred C
T ss_conf 6
No 183
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=25.60 E-value=45 Score=13.71 Aligned_cols=55 Identities=16% Similarity=0.029 Sum_probs=29.3
Q ss_pred CEEEEEC--C-----HHHHHHHHHHHHHCCCCEEEECC-------EEEEC---CCCCC--CCCCCCCCCEEEEE
Q ss_conf 9389858--9-----68869999999987982999421-------00000---78520--01644758799984
Q gi|255764510|r 1 MYIVITR--P-----IKKALRTQEKIQKMGYIPVMMPL-------SYFIH---DRESV--FLAMQQSYGAIAIT 55 (232)
Q Consensus 1 M~ilitR--p-----~~~a~~~~~~L~~~G~~~i~~Pl-------i~i~~---~~~~~--~~~~~~~~d~iift 55 (232)
|||||.- | ...++...+.+++.|.++...-+ ....+ .+.++ +...+..+|.|||-
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlq 74 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQ 74 (189)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEE
T ss_conf 91899982663201387888999999870248886156663588433466656796789999999846821245
No 184
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=25.48 E-value=45 Score=13.70 Aligned_cols=186 Identities=15% Similarity=0.064 Sum_probs=96.3
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf 999999987982999421000007852001644758799984846799-9886200136300041589999764101223
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232)
.....+.++|++.+....-+ .........-...|++|+++...-. .+......+.|+..++... ......+
T Consensus 20 gi~~~~~~~GY~~ll~~~~~---~~~~~~~l~~~~vDGiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~-----~~~~~~V 91 (261)
T cd06272 20 GINQAISKNGYNMNVSITPS---LAEAEDLFKENRFDGVIIFGESASDVEYLYKIKLAIPVVSYGVDY-----DLKYPIV 91 (261)
T ss_pred HHHHHHHHCCCEEEEEECCC---HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCC-----CCCCCEE
T ss_conf 99999998499899996898---599999999679989999789899799999974899399983678-----9999899
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH
Q ss_conf 5444545678999864220127775389721567562-------0146898469825676887504689998-8999862
Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL 164 (232)
Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~ 164 (232)
.. +....+..+.++... .+.+++.++.+..... -+.+.+.++|..+....++......... .....++
T Consensus 92 ~~---Dn~~~~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~i~~~~~~~~~~~~~~~~ll 167 (261)
T cd06272 92 NV---DNEKAMELAVLYLAE-KGHKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSAEGGDNAAKKLL 167 (261)
T ss_pred EE---CHHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 96---889999999999998-69982899669888735999999999999985998551389830310367999999998
Q ss_pred ---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCC
Q ss_conf ---37838998078999999971354405----803997188999999976996
Q gi|255764510|r 165 ---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKN 211 (232)
Q Consensus 165 ---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~ 211 (232)
..+++|+.++-..+..+.+.+...+. ++.++.+...--...-.-.+.
T Consensus 168 ~~~~~p~Ai~~~nD~~A~g~~~~l~~~g~~vP~dvsviGfDd~~~~~~~~P~LT 221 (261)
T cd06272 168 KESDLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQMAIIDPPLT 221 (261)
T ss_pred HCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHCCCCE
T ss_conf 527898610127689999999999980999999559999888188995099847
No 185
>KOG0953 consensus
Probab=25.04 E-value=46 Score=13.65 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=51.4
Q ss_pred EEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHCC-EEE-
Q ss_conf 972156756201468984698256768875046899988999862---378389980789999999713544058-039-
Q gi|255764510|r 120 IYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLPLPAKIS-AAF- 194 (232)
Q Consensus 120 l~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~~-~~~- 194 (232)
+++||+.+.=+|.+.+.+--..=.++.-|++-..-...+....-+ ...|.|+-||....-.....+...... ...
T Consensus 308 iHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953 308 IHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred HHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 10058804899999998631781489760005765000423202306888876999411148888999998558554899
Q ss_pred ---EECCHHHHHHHH
Q ss_conf ---971889999999
Q gi|255764510|r 195 ---LCLSNNIASAIP 206 (232)
Q Consensus 195 ---~~ig~~tA~~~~ 206 (232)
+-.+-+.|++..
T Consensus 388 YGsLPPeTr~aQA~~ 402 (700)
T KOG0953 388 YGSLPPETRLAQAAL 402 (700)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 558997306888987
No 186
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=24.98 E-value=46 Score=13.64 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=20.7
Q ss_pred CEEEEEC----CHH----HHHHHHHHHHHCCCCEEEECCEEEE
Q ss_conf 9389858----968----8699999999879829994210000
Q gi|255764510|r 1 MYIVITR----PIK----KALRTQEKIQKMGYIPVMMPLSYFI 35 (232)
Q Consensus 1 M~ilitR----p~~----~a~~~~~~L~~~G~~~i~~Pli~i~ 35 (232)
|||+..- +.. -.+...+.|++.|.++..+-+.+.-
T Consensus 1 MkIV~IsGS~s~~SrT~~L~~~v~~~L~~~g~ev~~i~l~dl~ 43 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSVLLEYAREWLQGLDVEVYHWNLQDFA 43 (191)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCC
T ss_conf 9599995899999749999999999998669858998633168
No 187
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=24.75 E-value=47 Score=13.61 Aligned_cols=149 Identities=7% Similarity=0.007 Sum_probs=86.5
Q ss_pred CCCEEEEEC--HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 587999848--467999886200136300041589999764101223544454567899986422012777538972156
Q gi|255764510|r 48 SYGAIAITS--SESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK 125 (232)
Q Consensus 48 ~~d~iiftS--~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~ 125 (232)
+.+..+++. -+|+.........+..++.-.++|+..+++..-.++..-..+..+....+.+... .++++.++...
T Consensus 8 ~~~i~v~~~~l~~av~~a~~~~~~g~dvIIsRGgta~~ir~~~~iPVv~I~~s~~Dil~al~~a~~---~~~kiavvg~~ 84 (169)
T pfam06506 8 DADVEVVDGGLEDAVEVARALVAEGVDVIISRGGTAAYLRDRLSVPVVEIKVSGFDLLRALARARR---YGGRIGLVGYE 84 (169)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH---HCCCEEEEECC
T ss_conf 772799977789999999999977995999896589999985899889982788699999999997---58979999276
Q ss_pred CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHC-CCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHH
Q ss_conf 7562014689846982567688750468999889998623-783899807899999997135440580399718899999
Q gi|255764510|r 126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQ-NADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASA 204 (232)
Q Consensus 126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~-~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~ 204 (232)
...+. ...+..+++ ++....+.|+..++...+.+...+ ...+.-|..+.+.
T Consensus 85 ~~~~~--------------------------~~~~~~il~~~i~~~~~~~~~e~~~~i~~l~~~G--~~vvVG~~~~~~~ 136 (169)
T pfam06506 85 NIIPG--------------------------LKALSELLGLDIVQRAYQSEEEARAAVKELKAQG--IKVIVGDGLVCDL 136 (169)
T ss_pred CCCHH--------------------------HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEECCCHHHHH
T ss_conf 30368--------------------------9999999699359999668899999999999869--9599858289999
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 9976996699879999889999986
Q gi|255764510|r 205 IPASYKNVVTVACFPKETSLLKLLP 229 (232)
Q Consensus 205 ~~~~g~~~~~va~~p~~~~ll~al~ 229 (232)
+++.|++.+.+ ..+.+++-+|+.
T Consensus 137 A~~~Gl~~vli--~sg~eSI~~A~~ 159 (169)
T pfam06506 137 AEQAGLQGVLI--YSGKESVREAFE 159 (169)
T ss_pred HHHCCCCEEEE--ECCHHHHHHHHH
T ss_conf 99839957999--667899999999
No 188
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.50 E-value=47 Score=13.58 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=20.8
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 938985896886999999998798299942
Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMP 30 (232)
Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~P 30 (232)
||+|+--- =..++++.|...|++.+|.-
T Consensus 1 MkilvD~~--Lp~rlad~l~~~g~e~~h~r 28 (113)
T COG4634 1 MKILVDAQ--LPPRLADWLPMAGIEAVHWR 28 (113)
T ss_pred CCEEEECC--CCHHHHHHHHHCCCCEEEEC
T ss_conf 93755367--88489998654355103451
No 189
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=23.75 E-value=49 Score=13.50 Aligned_cols=91 Identities=4% Similarity=-0.041 Sum_probs=53.2
Q ss_pred CCCCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEE---E-CCCCCCHHHHHHHHCCC-CEEEEECHHHHHHHHHHCC
Q ss_conf 2777538972156-756201468984698256768875---0-46899988999862378-3899807899999997135
Q gi|255764510|r 113 FTPQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYY---S-QDIAYPETTMKNLLQNA-DAILFYARSSVLYFFSLPL 186 (232)
Q Consensus 113 ~~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~---~-~~~~~~~~~~~~~~~~~-d~i~f~S~~~v~~~~~~~~ 186 (232)
....+.|--|+.. +-.++|.+.|+++|+.+..+..-- | .|+. .+.+.+- ++ .-...-|..+++.+-+.-.
T Consensus 192 A~~~GSVAAPTAGLHFt~~ll~~L~~kGv~ia~vTLHVG~GTF~PV~--~e~i~~H--~mH~E~~~I~~~t~~~In~ak~ 267 (366)
T PRK01424 192 SQIEGSVAAPTAGLHFTKDILDKLKAKGIQTAFVTLHVGAGTFLPVK--TENIHEH--KMHTEYCSITPETAEIINKAKQ 267 (366)
T ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCCCCCC--CCCCEEEEECHHHHHHHHHHHH
T ss_conf 28888401676768889999999998699279999986577647888--7763358--8746689979999999999987
Q ss_pred HHHCCEEEEECCHHHHHHHHHCCC
Q ss_conf 440580399718899999997699
Q gi|255764510|r 187 PAKISAAFLCLSNNIASAIPASYK 210 (232)
Q Consensus 187 ~~~~~~~~~~ig~~tA~~~~~~g~ 210 (232)
. .-+++|+|-++..+++....
T Consensus 268 ~---g~RViAVGTT~vRaLEs~~~ 288 (366)
T PRK01424 268 E---GRRIIAVGTTTLRTLESSCN 288 (366)
T ss_pred C---CCCEEEEECCHHHHHHHHHH
T ss_conf 1---89289994516887887751
No 190
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=23.06 E-value=51 Score=13.42 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH
Q ss_conf 9688699999999879829994210000078520016447587999848467999886
Q gi|255764510|r 8 PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPA 65 (232)
Q Consensus 8 p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~ 65 (232)
|.+....+.+.++++|.+..+++.++-. .++.....+.+.|+|.|+-.|--+.+..
T Consensus 42 ~~~~~~~~~~~~~~lG~~~~~l~~~~~a--~~~~~~~~l~~ad~i~~~GG~~~~~~~~ 97 (210)
T cd03129 42 RDEYGEEYRAAFERLGVEVVHLLLIDTA--NDPDVVARLLEADGIFVGGGNQLRLLSV 97 (210)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC--CCHHHHHHHHHCCEEEECCCCHHHHHHH
T ss_conf 0899999999999749948875122567--8716999997199999889889999999
No 191
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=22.79 E-value=51 Score=13.38 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=21.4
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3898589688699999999879829994
Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMM 29 (232)
Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~ 29 (232)
||++.-..+-+.+++=.++++|.+++..
T Consensus 14 kvmLLGSGELGKEvaIe~QRLG~eVIAV 41 (394)
T COG0027 14 KVMLLGSGELGKEVAIEAQRLGVEVIAV 41 (394)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 8999638864469999888638779996
No 192
>PRK09065 glutamine amidotransferase; Provisional
Probab=22.61 E-value=52 Score=13.36 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC-HHHH
Q ss_conf 9999999879829994210000078520016447587999848-4679
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS-SESL 60 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS-~~av 60 (232)
-|...|...|.+.... .......+.++.+||++|+|- +.+|
T Consensus 28 ~f~~ll~~~~~~~~~~------~v~~ge~~p~~~~~dg~iitGS~~~v 69 (238)
T PRK09065 28 WIRVALGLAEQPVVVV------DVFAGEPLPAPEDFAGVLITGSHAMV 69 (238)
T ss_pred HHHHHHHCCCCCEEEE------ECCCCCCCCCHHHCCEEEEECCCCCC
T ss_conf 9999872369857999------67279899895784889997985205
No 193
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=22.38 E-value=52 Score=13.33 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=64.3
Q ss_pred CCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEEC
Q ss_conf 7587999--84846799988620013630004158999976410122354445456789998642201-27775389721
Q gi|255764510|r 47 QSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVL-FTPQKPLIYLG 123 (232)
Q Consensus 47 ~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~vl~~~ 123 (232)
++.+.|+ ++|..+............+....+..+.......+....+............+...... ..+.+++.++.
T Consensus 66 d~V~aiiG~~~S~~~~av~~~~~~~~ip~i~~~~~s~~l~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~~~~k~vaii~ 145 (346)
T cd06330 66 EGVDMLIGLISSGVALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATIN 145 (346)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 89669977877577899999999839857844767656536788862157159868999999999997078980899993
Q ss_pred CC-----CCCCCHHHHHHHCCCEEEEE-EEEEECCCCCCHHHHHHHH-CCCCEEEEEC-HHHHHHHHHHCCHHH
Q ss_conf 56-----75620146898469825676-8875046899988999862-3783899807-899999997135440
Q gi|255764510|r 124 GK-----PRNFHFEDYLIEHKIPLRVI-DCYYSQDIAYPETTMKNLL-QNADAILFYA-RSSVLYFFSLPLPAK 189 (232)
Q Consensus 124 g~-----~~~~~l~~~L~~~g~~v~~~-~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S-~~~v~~~~~~~~~~~ 189 (232)
.+ ...+.+.+.+++.|..++.+ ..|......+....+.... .++|+|++.. +...-.|++...+.+
T Consensus 146 ~d~~~G~~~~~~~~~~~~~~g~~~~vv~~~~~~~~~~D~s~~l~~i~~~~pd~v~~~~~~~~~~~~~~q~~~~G 219 (346)
T cd06330 146 PDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFVRQANARG 219 (346)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 89567799999999999861789658888825899864699999999679999999066457999999999749
No 194
>PRK06703 flavodoxin; Provisional
Probab=22.29 E-value=52 Score=13.32 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf 86999999998798299942100000785200164475879998484
Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232)
Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232)
-|.+++..|++.|+++...++-++.+ ..+..+|.++|-|+
T Consensus 18 ~A~~i~~~l~~~g~~v~~~~~~~~~~-------~~l~~~d~li~gts 57 (151)
T PRK06703 18 IADLIKVSLDAFDHEVVLQEMDGMDA-------EELLAYDGIILGSY 57 (151)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCH-------HHHHCCCCEEEEEE
T ss_conf 99999999985799638976031998-------89842884599973
No 195
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=21.98 E-value=53 Score=13.29 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=74.3
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC--CC-------CCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEE--CCCHHHHH
Q ss_conf 99999998798299942100000785--20-------016447587999848467999886200136300--04158999
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE--SV-------FLAMQQSYGAIAITSSESLSTLPANFCRHTPIF--AIGEASAC 82 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~--~~-------~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~--~vg~~t~~ 82 (232)
-|.+.|.++|++. . -+++...+. +. ......+.|.|+-.+--+...+..... +.|+. ++......
T Consensus 19 g~~~~L~~~G~~~-~--n~~~~~~na~gd~~~~~~ia~~l~~~~~Dli~a~~Tpaa~a~~~~~~-~iPIVf~~v~dPv~a 94 (292)
T pfam04392 19 GIQEALKDFGYEP-K--NVLIKVKNAEGDPSKAAQIARQLVTDKNDLIIGIATPVAQILKSAIK-TIPIVFAAVTDPVGA 94 (292)
T ss_pred HHHHHHHHCCCCC-C--CEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCC-CCCEEEEEECCHHHH
T ss_conf 9999999759976-5--65999950789999999999999737998999875099999998359-999899972685660
Q ss_pred H----HHHHCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCEEEEECCCC-C-----CCCHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 9----764101223544-4545678999864220127775389721567-5-----620146898469825676887504
Q gi|255764510|r 83 L----ARQKGFTQIFHG-KDNSINLAKIIVEQKVLFTPQKPLIYLGGKP-R-----NFHFEDYLIEHKIPLRVIDCYYSQ 151 (232)
Q Consensus 83 ~----~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~-~-----~~~l~~~L~~~g~~v~~~~vY~~~ 151 (232)
- +...|.+.+... ..+.....+++.+ ..+.-+++.++-... . ...+.+...+.|+.+....+...
T Consensus 95 glv~s~~~pg~NvTGvs~~~~~~~~l~ll~~---l~P~~k~igviyn~~e~~s~~~~~~~~~~a~~~gi~l~~~~v~~~- 170 (292)
T pfam04392 95 KLVPSKEQPGENVTGVSDLVDVEQTIELIKK---LLPNVKSIGVYYSPSEANSVSLVEEIKKYAKKSGIKVVEASVPSS- 170 (292)
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHH---HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH-
T ss_conf 6644566899826785277479999999998---688985899995799865799999999999976998999966886-
Q ss_pred CCCCCHHHHHHHHCCCCEEEEECHHHHHH
Q ss_conf 68999889998623783899807899999
Q gi|255764510|r 152 DIAYPETTMKNLLQNADAILFYARSSVLY 180 (232)
Q Consensus 152 ~~~~~~~~~~~~~~~~d~i~f~S~~~v~~ 180 (232)
.+....+..+.++.|++++.....+..
T Consensus 171 --~ei~~a~~~l~~~~Dal~i~~d~~v~s 197 (292)
T pfam04392 171 --NDVPSAMSSMAGKVDAIFIPTDNLIAS 197 (292)
T ss_pred --HHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf --679999997432898899937810788
No 196
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=21.95 E-value=53 Score=13.28 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999999879829994
Q gi|255764510|r 14 RTQEKIQKMGYIPVMM 29 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~ 29 (232)
.++..|++.|+++..+
T Consensus 7 ylaa~L~~~G~~v~~~ 22 (127)
T cd02068 7 YLAAVLEDAGFIVAEH 22 (127)
T ss_pred HHHHHHHHCCCEEEEE
T ss_conf 9999999789957998
No 197
>PRK05569 flavodoxin; Provisional
Probab=21.82 E-value=54 Score=13.26 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCEE---EECCCCCHHHHHHH
Q ss_conf 99999997699669---98799998899999
Q gi|255764510|r 200 NIASAIPASYKNVV---TVACFPKETSLLKL 227 (232)
Q Consensus 200 ~tA~~~~~~g~~~~---~va~~p~~~~ll~a 227 (232)
.+.+.+++.|++.+ .+--.|+++.+=++
T Consensus 102 ~~~~~l~~~g~~vv~~~~~~~~P~~e~l~~c 132 (141)
T PRK05569 102 LWKDRMKDYGFNVIGDLAVNESPNKEELNSA 132 (141)
T ss_pred HHHHHHHHCCCEEECEEEEEECCCHHHHHHH
T ss_conf 9999999789848240589618898999999
No 198
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=21.76 E-value=54 Score=13.26 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=14.8
Q ss_pred CCCEEEEECHHHHHHHHHHCCH
Q ss_conf 7838998078999999971354
Q gi|255764510|r 166 NADAILFYARSSVLYFFSLPLP 187 (232)
Q Consensus 166 ~~d~i~f~S~~~v~~~~~~~~~ 187 (232)
++|.+++.|.|.|..-++....
T Consensus 548 ~pd~iliAtGSEV~lAv~Aa~~ 569 (663)
T COG0021 548 DPDVILIATGSEVELAVEAAKE 569 (663)
T ss_pred CCCEEEEECCCHHHHHHHHHHH
T ss_conf 9988999466599999999999
No 199
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=21.33 E-value=55 Score=13.20 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=55.0
Q ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE----CHHHHHHHHHHHC--CCCCE
Q ss_conf 93898589688-69999999987982999421000007852001644758799984----8467999886200--13630
Q gi|255764510|r 1 MYIVITRPIKK-ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT----SSESLSTLPANFC--RHTPI 73 (232)
Q Consensus 1 M~ilitRp~~~-a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift----S~~av~~~~~~~~--~~~~~ 73 (232)
||||+.=+.+. +..+...|+..|+++....-.+ .......-..+|.++.- ..+|...+..... ...|+
T Consensus 1 mkILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~-----~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~pi 75 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAK-----EADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPI 75 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHH-----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCE
T ss_conf 9899995989999999999997899999989999-----99999975799899997999898864001201104898768
Q ss_pred ECCCH----HHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 00415----899997641012235444545678999
Q gi|255764510|r 74 FAIGE----ASACLARQKGFTQIFHGKDNSINLAKI 105 (232)
Q Consensus 74 ~~vg~----~t~~~~~~~~~~~~~~~~~~~~~~~~l 105 (232)
..+.. .........|.......+.....+...
T Consensus 76 I~lta~~~~~~~~~al~~Gaddyl~KP~~~~eL~ar 111 (223)
T PRK10816 76 LVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMAR 111 (223)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 999444567789999986998864189777899999
No 200
>pfam01094 ANF_receptor Receptor family ligand binding region. This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Probab=21.23 E-value=55 Score=13.19 Aligned_cols=74 Identities=12% Similarity=-0.057 Sum_probs=30.8
Q ss_pred CCEEEEECCCCC-----CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEE-EECHHHHHHHHHHCC
Q ss_conf 753897215675-----6201468984698256768875046899988999862---3783899-807899999997135
Q gi|255764510|r 116 QKPLIYLGGKPR-----NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAIL-FYARSSVLYFFSLPL 186 (232)
Q Consensus 116 ~~~vl~~~g~~~-----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~-f~S~~~v~~~~~~~~ 186 (232)
-+++.++..+.. ...+.+.+.+.|..+.....+......+....+..+. .+.|+|+ +.++..+..|++.+.
T Consensus 119 ~~~vail~~~~~~g~~~~~~~~~~~~~~g~~iv~~~~~~~~~~~~~~~~~~~i~~~~~~~~vv~~~~~~~~~~~~~~~a~ 198 (344)
T pfam01094 119 WKRVAVIYDDDDYGEGGLEALEDALREAGGNVVAKASEVIASDDDFTALLKELKDIKSKARVIVVCGSSDDLRQILQQAR 198 (344)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 95379995176477999999999999879989999986489997889999999961779988999567089999999999
Q ss_pred HHH
Q ss_conf 440
Q gi|255764510|r 187 PAK 189 (232)
Q Consensus 187 ~~~ 189 (232)
..+
T Consensus 199 ~~g 201 (344)
T pfam01094 199 ELG 201 (344)
T ss_pred HCC
T ss_conf 759
No 201
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=21.10 E-value=56 Score=13.18 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=87.2
Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECH-----H-HHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 99999999879829994210000078-5200164475879998484-----6-799988620013630004158999976
Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSS-----E-SLSTLPANFCRHTPIFAIGEASACLAR 85 (232)
Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~-----~-av~~~~~~~~~~~~~~~vg~~t~~~~~ 85 (232)
....+.+.++|+.++..-.-.-.... .-.....-...|++|+.+. + ....+........|+..++....
T Consensus 19 ~gi~~~~~~~gy~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~~~~~~~~l~~~~iPvV~i~~~~~---- 94 (273)
T cd01541 19 RGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINASYE---- 94 (273)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC----
T ss_conf 9999999986998999978999899999999999659998999253103578777999999976998999956778----
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC------CCCHHHHHHHCCCEEEEEEE--EEECCCC-CC
Q ss_conf 410122354445456789998642201277753897215675------62014689846982567688--7504689-99
Q gi|255764510|r 86 QKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPR------NFHFEDYLIEHKIPLRVIDC--YYSQDIA-YP 156 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~------~~~l~~~L~~~g~~v~~~~v--Y~~~~~~-~~ 156 (232)
......+.. ++ ......+.++... .+.+++.++.+... ..-+.+.+.++|..+....+ |.+.... ..
T Consensus 95 ~~~~~~V~~--Dn-~~a~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (273)
T cd01541 95 ELNFPSLVL--DD-EKGGYKATEYLIE-LGHRKIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSNVITYTTEEKEEKL 170 (273)
T ss_pred CCCCCEEEE--CC-HHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHH
T ss_conf 899988997--85-9999999999985-6996089981676310799999999999987999772332244675168999
Q ss_pred HHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf 88999862---37838998078999999971354405----803997188
Q gi|255764510|r 157 ETTMKNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232)
Q Consensus 157 ~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232)
...+..++ .++|+|+.++-..+-.+...+...+. ++.++++..
T Consensus 171 ~~~~~~ll~~~~~~~av~~~~D~~A~g~~~~l~~~g~~vP~dvsIigfd~ 220 (273)
T cd01541 171 FEKIKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIPEDISVVGFDD 220 (273)
T ss_pred HHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 99999998369999569848889998899865314888887724761287
No 202
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=20.98 E-value=56 Score=13.16 Aligned_cols=135 Identities=15% Similarity=0.081 Sum_probs=73.3
Q ss_pred CCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHH----HHHHHCCCCCCCCCCCHHHHHHHHHHH---------
Q ss_conf 6447587999848467999-88620013630004158999----976410122354445456789998642---------
Q gi|255764510|r 44 AMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASAC----LARQKGFTQIFHGKDNSINLAKIIVEQ--------- 109 (232)
Q Consensus 44 ~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~--------- 109 (232)
....++|.+++ |..-+.. +.....+-.-+...|.++.. +..+.|......+..++...+|+..-.
T Consensus 41 ~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~ 119 (324)
T COG0111 41 EALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIP 119 (324)
T ss_pred HHCCCCCEEEE-ECCCCCHHHHHCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 74033788999-36888999982188861999905165543635531374379967986537699999999999960564
Q ss_pred ----------HH------CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCC-----CHHHHHHHHCCCC
Q ss_conf ----------20------12777538972156756201468984698256768875046899-----9889998623783
Q gi|255764510|r 110 ----------KV------LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY-----PETTMKNLLQNAD 168 (232)
Q Consensus 110 ----------~~------~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~-----~~~~~~~~~~~~d 168 (232)
+. ....++.+.++.-......+.+.|+..|.+|.-+..|....... ....+.+++.+.|
T Consensus 120 ~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~aD 199 (324)
T COG0111 120 DADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEAD 199 (324)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCCHHHHHHHCC
T ss_conf 77899872867523566510169889998987899999999986798699988988600012356311026999987699
Q ss_pred EEEEECHHHHH
Q ss_conf 89980789999
Q gi|255764510|r 169 AILFYARSSVL 179 (232)
Q Consensus 169 ~i~f~S~~~v~ 179 (232)
+|++--|.+-+
T Consensus 200 iv~lh~PlT~e 210 (324)
T COG0111 200 ILTLHLPLTPE 210 (324)
T ss_pred EEEECCCCCCH
T ss_conf 99983899812
No 203
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=20.71 E-value=57 Score=13.12 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-HHHHH--HHHHCCCCCEECCCHH
Q ss_conf 869999999987982999421000007852001644758799984846-79998--8620013630004158
Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-SLSTL--PANFCRHTPIFAIGEA 79 (232)
Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-av~~~--~~~~~~~~~~~~vg~~ 79 (232)
...+++..|++.|++++..--.+ +.........+..++|++.-. ....+ ........|+|..+..
T Consensus 5 ~~~~l~~~l~~~~~~vv~~~~~~----d~~~~~~~~~~i~avil~~~~~~~~ll~~ir~~n~~lPvFl~~~~ 72 (111)
T pfam03709 5 ASRELAEALEATGREVVDATSTD----DLLSLIETFTDIAAVVLSWDDEARGLLDEIRRRNFDLPVFLLAET 72 (111)
T ss_pred HHHHHHHHHHHCCCEEEEECCHH----HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECH
T ss_conf 58999999997898899748789----999999838787689998460689999999974789998988441
No 204
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=20.61 E-value=57 Score=13.11 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH--H-HHHHHH-------
Q ss_conf 454567899986422012777538972156-75620146898469825676887504689998--8-999862-------
Q gi|255764510|r 96 KDNSINLAKIIVEQKVLFTPQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE--T-TMKNLL------- 164 (232)
Q Consensus 96 ~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~--~-~~~~~~------- 164 (232)
.|+.+...|-+..+ ...++-.++-||-. +..-=..-.|.+..-+--...+-.|++++... . .+....
T Consensus 476 DGPTHQP~EqLa~L--Ra~PN~~vwRP~D~~E~aaa~~~a~~kas~~~Pt~L~LtRQnLp~l~~T~~~~~~~~KGgYv~~ 553 (675)
T TIGR00232 476 DGPTHQPIEQLASL--RAIPNLSVWRPADGNETAAAYKYALEKASQDAPTVLILTRQNLPQLERTESSLEKVLKGGYVLK 553 (675)
T ss_pred CCCCCCCHHHHHHH--HHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 88847702230233--2203531623787327899999999962058980799805777776642789998633980787
Q ss_pred --CC-CCEEEEECHHHHHHHHHHCC---HHHCCEEEEECCHH
Q ss_conf --37-83899807899999997135---44058039971889
Q gi|255764510|r 165 --QN-ADAILFYARSSVLYFFSLPL---PAKISAAFLCLSNN 200 (232)
Q Consensus 165 --~~-~d~i~f~S~~~v~~~~~~~~---~~~~~~~~~~ig~~ 200 (232)
++ +|.|++.|+|.|+.-++... ..+.++++|++-..
T Consensus 554 d~~~~Pd~iliAtGSEV~La~~a~~~L~~~~~kvrVVS~P~~ 595 (675)
T TIGR00232 554 DSKGEPDIILIATGSEVQLAVEAAKKLAAENIKVRVVSMPSF 595 (675)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 258794089985273689999999999854985799965864
No 205
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=20.47 E-value=11 Score=17.33 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCEEEEECHHH---HHHHHHHHC
Q ss_conf 520016447587999848467---999886200
Q gi|255764510|r 39 ESVFLAMQQSYGAIAITSSES---LSTLPANFC 68 (232)
Q Consensus 39 ~~~~~~~~~~~d~iiftS~~a---v~~~~~~~~ 68 (232)
+..+..-.+.|||++|-.-|| |..+..+++
T Consensus 24 YaaEi~A~AGfDWLL~DgEHAPnDv~~~l~QLQ 56 (249)
T TIGR02311 24 YAAEIVAGAGFDWLLIDGEHAPNDVRTLLSQLQ 56 (249)
T ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 244653314763110147658146899998710
No 206
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=20.42 E-value=57 Score=13.09 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHH-HCCCCEEEECC
Q ss_conf 688699999999-87982999421
Q gi|255764510|r 9 IKKALRTQEKIQ-KMGYIPVMMPL 31 (232)
Q Consensus 9 ~~~a~~~~~~L~-~~G~~~i~~Pl 31 (232)
.+..+.++++++ ++|..++.+|-
T Consensus 41 ~~~~~~~~~~~~e~~~~P~ilfPs 64 (242)
T TIGR01768 41 LDKLDQLIEALRERYGVPIILFPS 64 (242)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 688999999997405983798418
No 207
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.28 E-value=58 Score=13.07 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=33.9
Q ss_pred EEEEECC---HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC-C-CCCCCCCCEEE----EECHHHHHHHHHHHC
Q ss_conf 3898589---688699999999879829994210000078520-0-16447587999----848467999886200
Q gi|255764510|r 2 YIVITRP---IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV-F-LAMQQSYGAIA----ITSSESLSTLPANFC 68 (232)
Q Consensus 2 ~ilitRp---~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~-~~~~~~~d~ii----ftS~~av~~~~~~~~ 68 (232)
.+|||=. +.=+...+..|.+.|++++..-.- +...... . .........++ .++...++.+.....
T Consensus 8 ~~lVTGaag~rGIG~aiA~~la~~Ga~Vvi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 81 (256)
T PRK08594 8 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG--ERLEKEVRELAETLEQQESLVLPCDVTSDEEITACFETIK 81 (256)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8999899999639999999999879999997488--0669999999987079947999913899999999999999
No 208
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=20.21 E-value=58 Score=13.06 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=50.4
Q ss_pred EEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEE----CH-HHHHHHHHHCCHHHC-CE
Q ss_conf 8972156756201468984698256768875046899988999862378389980----78-999999971354405-80
Q gi|255764510|r 119 LIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFY----AR-SSVLYFFSLPLPAKI-SA 192 (232)
Q Consensus 119 vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~----S~-~~v~~~~~~~~~~~~-~~ 192 (232)
|+++ -=+....+.+.|.++|+.|. ++-|++ ..+.+.+ -++|+|+++ =| +.++...+.+.+... ++
T Consensus 199 Vv~~-DfG~K~nIlr~L~~rG~~v~-vVP~~~-----~~~~i~~--~~PDGiflSNGPGDPH~~~~~~i~~~~~l~~~~~ 269 (383)
T TIGR01368 199 VVVI-DFGVKQNILRRLVKRGCEVT-VVPYDT-----DAEEIKK--YNPDGIFLSNGPGDPHAAVEPAIETVRELLEAKI 269 (383)
T ss_pred EEEE-ECCCCHHHHHHHHHCCCEEE-EECCCC-----CHHHHHH--HCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9998-55887558989976698799-967899-----8899986--5788899908798805678999999999984489
Q ss_pred E--EEECCHHHHHHH
Q ss_conf 3--997188999999
Q gi|255764510|r 193 A--FLCLSNNIASAI 205 (232)
Q Consensus 193 ~--~~~ig~~tA~~~ 205 (232)
. =+|+|.=+-+.+
T Consensus 270 P~fGICLGHQllALA 284 (383)
T TIGR01368 270 PIFGICLGHQLLALA 284 (383)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 710026668999997
No 209
>PRK06490 glutamine amidotransferase; Provisional
Probab=20.15 E-value=58 Score=13.05 Aligned_cols=54 Identities=13% Similarity=-0.037 Sum_probs=32.5
Q ss_pred EEEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE-CHHHH
Q ss_conf 389858--968869999999987982999421000007852001644758799984-84679
Q gi|255764510|r 2 YIVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT-SSESL 60 (232)
Q Consensus 2 ~ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift-S~~av 60 (232)
+|||.+ +.+....+.+.|++.|++.-..-...-.+++ ..+++||++|++ ++-+|
T Consensus 13 ~vLviqH~~~e~pG~i~~~L~~~G~~~~i~r~~~gd~lP-----~~l~~~dglvVlGGpmsa 69 (243)
T PRK06490 13 PILIVLHQERSTPGRVGQLLRERGYPLDIRRPRLGDPLP-----ETLEDHAGAVIFGGPMSA 69 (243)
T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC-----CCCCCCCEEEEECCCCCC
T ss_conf 579996689999729999999789858999678999899-----975460589992899998
No 210
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=20.09 E-value=58 Score=13.05 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=77.4
Q ss_pred CCCCCEEEEECHHHHH--HHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 4758799984846799--98862001363000415899997641012235444545678999864220127775389721
Q gi|255764510|r 46 QQSYGAIAITSSESLS--TLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLG 123 (232)
Q Consensus 46 ~~~~d~iiftS~~av~--~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~ 123 (232)
....|+||.++..... ........+.|+...+..............+. .+.......+.++... .+.+++.++.
T Consensus 56 ~~~vd~ii~~~~~~~~~~~~~~~~~~~iPvv~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~l~~-~g~~~i~~i~ 131 (269)
T cd01391 56 QQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLTGYPYVFRVG---PDNEQAGEAAAEYLAE-KGWKRVALIY 131 (269)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEE---ECHHHHHHHHHHHHHH-HCCCEEEEEC
T ss_conf 74999999468874448999999976981999678878777888658998---5889999999868987-1896169973
Q ss_pred CCCC------CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-C--CCCEEEEECHHHHHHHHHHCCHHHC---C
Q ss_conf 5675------6201468984698256768875046899988999862-3--7838998078999999971354405---8
Q gi|255764510|r 124 GKPR------NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-Q--NADAILFYARSSVLYFFSLPLPAKI---S 191 (232)
Q Consensus 124 g~~~------~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~--~~d~i~f~S~~~v~~~~~~~~~~~~---~ 191 (232)
+... ..-+.+.++++|..+.....+.... ..........+ . ++++|+..+...+..+++.+...+. +
T Consensus 132 ~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a~~~~G~~p~d 210 (269)
T cd01391 132 GDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT-EKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAAREAGLTPGD 210 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCC
T ss_conf 79857799999999999998699867999713432-14899999998618997399988889999999999986989476
Q ss_pred EEEEECCHHHHH
Q ss_conf 039971889999
Q gi|255764510|r 192 AAFLCLSNNIAS 203 (232)
Q Consensus 192 ~~~~~ig~~tA~ 203 (232)
+.++.+...-..
T Consensus 211 ~~iig~d~~~~~ 222 (269)
T cd01391 211 ISIIGFDGSPAA 222 (269)
T ss_pred EEEEEECCCHHH
T ss_conf 599817898899
No 211
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.09 E-value=58 Score=13.04 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCCEEEECCE
Q ss_conf 699999999879829994210
Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLS 32 (232)
Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli 32 (232)
+.-++.+|++.|+++.....+
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v 39 (140)
T pfam00994 19 GPLLAALLREAGAEVIRYGIV 39 (140)
T ss_pred HHHHHHHHHHCCCEEEEEEEE
T ss_conf 999999999879937799897
No 212
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=20.08 E-value=58 Score=13.04 Aligned_cols=200 Identities=15% Similarity=0.125 Sum_probs=93.2
Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCC----CCCCCCCCCCEEEEECHH--HH-HHHHHHHCCCCCEECCCHHHHHHHHH
Q ss_conf 999999987982999421000007852----001644758799984846--79-99886200136300041589999764
Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRES----VFLAMQQSYGAIAITSSE--SL-STLPANFCRHTPIFAIGEASACLARQ 86 (232)
Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~----~~~~~~~~~d~iiftS~~--av-~~~~~~~~~~~~~~~vg~~t~~~~~~ 86 (232)
-..+.++++|++++.+.. ...+.. +........|.|++.+.. ++ ..+......+.|+..+......
T Consensus 47 gie~~a~~~Gy~l~v~~s---~~d~~~q~~~i~~li~~~vdgiii~p~d~~~~~~~~~~a~~~gIPvV~~d~~~~~---- 119 (295)
T PRK10653 47 GAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRGATK---- 119 (295)
T ss_pred HHHHHHHHCCCEEEEEEC---CCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCC----
T ss_conf 999999976998999839---9999999999999997699889984777065699999999769819999512788----
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-
Q ss_conf 1012235444545678999864220-12777538972156756-------20146898469825676887504689998-
Q gi|255764510|r 87 KGFTQIFHGKDNSINLAKIIVEQKV-LFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE- 157 (232)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~- 157 (232)
....... ...+ ........++.. ....+.+++++.|.... .-+.+.|+++++.+.. .+.........
T Consensus 120 ~~~~~~V-~~Dn-~~~g~~a~~~L~~~~~~~~~i~~~~G~~~~~~~~~R~~Gf~~al~~~~~~~~~--~~~~~~~~~~g~ 195 (295)
T PRK10653 120 GEVVSHI-ASDN-VLGGKMAGDYIAKKAGEGAKVIQLEGIAGTSAARERGEGFQQAVAAHKFNVLA--SQPADFDRTKGL 195 (295)
T ss_pred CCCCEEE-EECH-HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE--EECCCCCHHHHH
T ss_conf 7700399-8656-99999999999986189958999958989868999999999999866986875--304777899999
Q ss_pred HHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHH-CCEEEEECC--HHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 8999862---3783899807899999997135440-580399718--899999997699669987999988999
Q gi|255764510|r 158 TTMKNLL---QNADAILFYARSSVLYFFSLPLPAK-ISAAFLCLS--NNIASAIPASYKNVVTVACFPKETSLL 225 (232)
Q Consensus 158 ~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~-~~~~~~~ig--~~tA~~~~~~g~~~~~va~~p~~~~ll 225 (232)
.....++ .++++|+-++-..+-..++.+...+ .++.++.+- +..-..+ ..|.-...+.+.|.+-+-.
T Consensus 196 ~~~~~lL~~~p~~~aIf~~nD~~A~Ga~~al~~~G~~di~vvGfD~~~~~~~~i-~~g~~~~Tv~Q~~~~~G~~ 268 (295)
T PRK10653 196 NVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV-NDGKLAATIAQQPDQIGAK 268 (295)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH-HCCCCEEEEECCHHHHHHH
T ss_conf 999999960899778997797799999999998099983999289987999997-7499629992799999999
No 213
>PRK07261 topology modulation protein; Provisional
Probab=20.03 E-value=59 Score=13.04 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=24.2
Q ss_pred CEEEEECCHH-HHHHHHHHH-HHCCCCEEEECCEEEEC
Q ss_conf 9389858968-869999999-98798299942100000
Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKI-QKMGYIPVMMPLSYFIH 36 (232)
Q Consensus 1 M~ilitRp~~-~a~~~~~~L-~~~G~~~i~~Pli~i~~ 36 (232)
|||+|.=+.. +-..||..| +..|+.++++=-+.-.|
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~p 38 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFSS 38 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEECC
T ss_conf 98999889998689999999998797979702278889
Done!