Query gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 232 No_of_seqs 102 out of 2643 Neff 9.6 Searched_HMMs 23785 Date Sat Jun 4 22:51:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764510.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1jr2_A Uroporphyrinogen-III sy 100.0 4.9E-44 0 282.2 21.3 227 1-230 22-278 (286) 2 3mw8_A Uroporphyrinogen-III sy 100.0 3.7E-42 0 271.0 21.1 229 1-230 2-240 (240) 3 3d8t_A Uroporphyrinogen-III sy 100.0 2.1E-42 0 272.4 17.4 223 1-230 34-279 (286) 4 1wcw_A Uroporphyrinogen III sy 100.0 3.1E-39 1.3E-43 253.4 18.4 223 1-230 9-254 (261) 5 3p9z_A Uroporphyrinogen III co 100.0 4.6E-32 1.9E-36 210.4 21.3 200 25-229 6-222 (229) 6 3mw8_A Uroporphyrinogen-III sy 99.1 2E-10 8.5E-15 80.5 8.6 106 116-222 1-106 (240) 7 3d8t_A Uroporphyrinogen-III sy 99.1 1.4E-10 5.7E-15 81.6 7.3 113 115-229 32-153 (286) 8 1wcw_A Uroporphyrinogen III sy 99.1 4.6E-10 1.9E-14 78.4 8.8 113 116-230 8-129 (261) 9 1jr2_A Uroporphyrinogen-III sy 99.0 2.1E-09 8.7E-14 74.5 10.4 114 115-231 20-153 (286) 10 3p9z_A Uroporphyrinogen III co 98.6 1.4E-07 5.7E-12 63.6 7.8 108 2-109 112-224 (229) 11 2ekl_A D-3-phosphoglycerate de 96.8 0.0027 1.1E-07 37.7 6.3 167 1-178 6-208 (313) 12 2cuk_A Glycerate dehydrogenase 96.6 0.0025 1.1E-07 37.9 4.8 166 1-176 1-203 (311) 13 1wwk_A Phosphoglycerate dehydr 96.3 0.017 7.1E-07 33.0 7.7 166 1-177 4-207 (307) 14 1sc6_A PGDH, D-3-phosphoglycer 96.1 0.029 1.2E-06 31.6 8.1 172 1-177 5-208 (404) 15 3oet_A Erythronate-4-phosphate 95.9 0.01 4.3E-07 34.3 5.2 163 1-175 4-179 (381) 16 2g76_A 3-PGDH, D-3-phosphoglyc 95.7 0.031 1.3E-06 31.4 6.9 166 1-176 27-229 (335) 17 3k9c_A Transcriptional regulat 95.7 0.085 3.6E-06 28.8 9.1 177 14-198 32-221 (289) 18 2o4c_A Erythronate-4-phosphate 95.4 0.029 1.2E-06 31.5 5.9 164 1-177 1-178 (380) 19 2gcg_A Glyoxylate reductase/hy 94.9 0.072 3E-06 29.2 6.6 173 1-177 9-221 (330) 20 1xdw_A NAD+-dependent (R)-2-hy 94.6 0.2 8.5E-06 26.5 9.7 170 1-177 1-209 (331) 21 1gdh_A D-glycerate dehydrogena 94.6 0.14 5.8E-06 27.5 7.4 168 1-177 2-213 (320) 22 3k5p_A D-3-phosphoglycerate de 94.5 0.12 5.3E-06 27.8 7.1 173 1-179 16-221 (416) 23 2dbq_A Glyoxylate reductase; D 93.1 0.38 1.6E-05 24.9 7.4 168 1-177 3-215 (334) 24 3c3k_A Alanine racemase; struc 92.7 0.44 1.9E-05 24.5 9.7 180 13-200 28-222 (285) 25 1o1y_A Conserved hypothetical 90.2 0.36 1.5E-05 25.0 4.7 52 1-57 13-66 (239) 26 3m3p_A Glutamine amido transfe 86.9 0.71 3E-05 23.2 4.4 51 1-56 3-56 (250) 27 2pi1_A D-lactate dehydrogenase 86.8 0.35 1.5E-05 25.1 2.8 165 1-176 1-204 (334) 28 1dxy_A D-2-hydroxyisocaproate 86.8 1.4 5.8E-05 21.5 10.4 171 1-176 1-207 (333) 29 3jy6_A Transcriptional regulat 85.3 1.6 6.9E-05 21.1 11.0 175 13-198 27-217 (276) 30 3llv_A Exopolyphosphatase-rela 85.1 1.7 6.9E-05 21.0 6.6 76 156-231 59-138 (141) 31 3gyb_A Transcriptional regulat 84.6 1.8 7.4E-05 20.9 7.7 178 13-201 25-215 (280) 32 3i09_A Periplasmic branched-ch 83.6 1.9 8.1E-05 20.6 7.5 141 48-190 71-220 (375) 33 3ba1_A HPPR, hydroxyphenylpyru 83.5 1.6 6.9E-05 21.0 4.9 168 1-177 24-226 (333) 34 3g85_A Transcriptional regulat 83.5 2 8.2E-05 20.6 12.1 175 14-198 33-224 (289) 35 3clk_A Transcription regulator 80.5 2.5 0.00011 19.9 9.9 177 14-199 29-222 (290) 36 3jtm_A Formate dehydrogenase, 80.0 2.6 0.00011 19.8 4.9 157 15-177 32-231 (351) 37 3lkb_A Probable branched-chain 79.7 2.7 0.00011 19.8 9.2 109 97-206 124-243 (392) 38 3l6u_A ABC-type sugar transpor 79.5 2.7 0.00011 19.7 8.2 205 13-223 28-254 (293) 39 3bbl_A Regulatory protein of L 78.7 2.9 0.00012 19.6 10.2 181 12-200 27-226 (287) 40 1ydg_A Trp repressor binding p 77.2 2.1 8.8E-05 20.4 3.7 58 1-58 7-88 (211) 41 1sg0_A NRH dehydrogenase [quin 76.9 1.3 5.4E-05 21.7 2.6 31 1-31 3-41 (230) 42 3hcw_A Maltose operon transcri 76.4 3.4 0.00014 19.2 6.2 178 15-200 34-230 (295) 43 2h0a_A TTHA0807, transcription 73.6 4 0.00017 18.8 10.7 176 14-199 20-217 (276) 44 3n0w_A ABC branched chain amin 72.5 4.2 0.00018 18.6 6.3 142 47-190 72-222 (379) 45 1ccw_A Protein (glutamate muta 72.2 4.3 0.00018 18.6 7.4 96 128-230 20-132 (137) 46 3kke_A LACI family transcripti 69.4 4.9 0.00021 18.2 8.5 178 14-200 36-235 (303) 47 2d0i_A Dehydrogenase; structur 69.0 5 0.00021 18.1 5.3 204 1-231 3-252 (333) 48 3miz_A Putative transcriptiona 69.0 5 0.00021 18.1 5.1 180 13-199 34-234 (301) 49 2fep_A Catabolite control prot 68.5 5.2 0.00022 18.1 8.1 180 13-200 36-233 (289) 50 1id1_A Putative potassium chan 67.8 5.3 0.00022 18.0 7.0 74 156-229 60-138 (153) 51 1vme_A Flavoprotein; TM0755, s 67.5 4.1 0.00017 18.7 3.3 111 115-227 264-401 (410) 52 3gv0_A Transcriptional regulat 66.6 5.7 0.00024 17.8 9.2 175 14-199 31-225 (288) 53 3f0h_A Aminotransferase; RER07 66.1 5.8 0.00024 17.8 4.4 57 2-58 97-154 (376) 54 1t5b_A Acyl carrier protein ph 65.8 5.8 0.00025 17.7 5.0 13 46-58 84-96 (201) 55 3geb_A EYES absent homolog 2; 64.1 6.3 0.00026 17.5 4.3 46 185-230 224-271 (274) 56 1byk_A Protein (trehalose oper 62.7 6.7 0.00028 17.4 5.6 193 13-220 22-225 (255) 57 3kbo_A Glyoxylate/hydroxypyruv 62.4 6.8 0.00029 17.3 9.4 65 114-178 137-205 (315) 58 3d8u_A PURR transcriptional re 61.7 7 0.00029 17.3 9.1 176 14-200 24-219 (275) 59 2a9v_A GMP synthase; NP_394403 61.5 5.7 0.00024 17.8 3.2 48 1-56 14-62 (212) 60 3p0r_A Azoreductase; structura 60.4 7.4 0.00031 17.1 4.8 13 46-58 90-102 (211) 61 3huu_A Transcription regulator 60.1 7.4 0.00031 17.1 5.8 179 14-200 48-240 (305) 62 2vk2_A YTFQ, ABC transporter p 60.0 7.5 0.00031 17.1 8.5 203 13-223 22-253 (306) 63 2yxb_A Coenzyme B12-dependent 59.3 7.7 0.00032 17.0 6.2 106 116-228 18-139 (161) 64 3g1w_A Sugar ABC transporter; 59.3 7.7 0.00032 17.0 11.0 202 15-223 26-247 (305) 65 1d4a_A DT-diaphorase, quinone 59.1 5.5 0.00023 17.9 2.7 22 12-33 22-43 (273) 66 3fwz_A Inner membrane protein 58.0 8.1 0.00034 16.9 8.0 95 128-229 39-138 (140) 67 2rgy_A Transcriptional regulat 58.0 8.1 0.00034 16.9 8.9 178 14-199 29-226 (290) 68 3f2v_A General stress protein 56.3 8.6 0.00036 16.7 3.3 57 2-58 3-68 (192) 69 2gk3_A Putative cytoplasmic pr 56.1 7.7 0.00032 17.0 3.1 46 10-56 40-85 (256) 70 1j4a_A D-LDH, D-lactate dehydr 55.6 8.9 0.00037 16.7 8.5 168 1-176 2-209 (333) 71 1m1n_A Nitrogenase molybdenum- 55.0 9.1 0.00038 16.6 9.9 192 9-215 231-440 (491) 72 3h2s_A Putative NADH-flavin re 53.7 9.5 0.0004 16.5 4.2 29 1-29 1-30 (224) 73 3aek_A Light-independent proto 52.8 9.9 0.00041 16.4 13.9 198 3-212 188-398 (437) 74 5nul_A Flavodoxin; electron tr 51.2 9.7 0.00041 16.4 3.0 50 1-57 1-54 (138) 75 3ew7_A LMO0794 protein; Q8Y8U8 51.2 10 0.00044 16.2 4.5 29 1-29 1-30 (221) 76 3brq_A HTH-type transcriptiona 50.9 11 0.00044 16.2 10.0 177 14-198 42-236 (296) 77 2g1u_A Hypothetical protein TM 50.8 11 0.00045 16.2 5.7 102 114-216 17-137 (155) 78 2vy9_A Anti-sigma-factor antag 50.0 4.5 0.00019 18.4 1.1 61 170-230 53-116 (123) 79 2z9v_A Aspartate aminotransfer 48.0 12 0.00049 15.9 3.0 31 2-32 85-115 (392) 80 2p5y_A UDP-glucose 4-epimerase 46.8 12 0.00052 15.8 3.9 29 1-29 1-30 (311) 81 2c5a_A GDP-mannose-3', 5'-epim 46.3 13 0.00053 15.8 4.2 29 1-29 30-59 (379) 82 3keg_A FMN-dependent NADH-azor 46.0 13 0.00053 15.7 5.4 14 45-58 84-97 (212) 83 1w2w_B 5-methylthioribose-1-ph 43.6 13 0.00054 15.7 2.6 32 2-33 6-40 (191) 84 3hg7_A D-isomer specific 2-hyd 42.9 14 0.00059 15.4 6.8 66 114-179 138-207 (324) 85 3fvw_A Putative NAD(P)H-depend 42.4 14 0.0006 15.4 3.7 28 2-29 4-38 (192) 86 1vl0_A DTDP-4-dehydrorhamnose 42.0 13 0.00056 15.6 2.5 30 1-30 13-43 (292) 87 2pk3_A GDP-6-deoxy-D-LYXO-4-he 41.4 15 0.00063 15.3 4.2 30 1-30 13-43 (321) 88 3l4b_C TRKA K+ channel protien 41.2 15 0.00063 15.3 4.7 95 1-95 1-119 (218) 89 3fij_A LIN1909 protein; 11172J 41.0 15 0.00064 15.3 2.7 41 13-58 31-71 (254) 90 1dbq_A Purine repressor; trans 39.3 16 0.00068 15.1 6.9 180 13-199 27-224 (289) 91 2zki_A 199AA long hypothetical 39.3 13 0.00054 15.7 2.1 47 12-58 21-80 (199) 92 2fz5_A Flavodoxin; alpha/beta 39.1 16 0.00068 15.1 3.3 40 11-57 16-55 (137) 93 3ecs_A Translation initiation 38.7 16 0.00069 15.0 3.1 97 114-217 120-231 (315) 94 1p90_A NAFY protein, hypotheti 37.7 17 0.00072 14.9 3.5 34 196-229 75-108 (145) 95 2pzm_A Putative nucleotide sug 37.4 17 0.00073 14.9 3.5 29 1-29 21-50 (330) 96 1udb_A Epimerase, UDP-galactos 37.3 17 0.00073 14.9 4.2 29 1-29 1-30 (338) 97 2hmt_A YUAA protein; RCK, KTN, 37.2 17 0.00073 14.9 6.7 75 156-230 59-138 (144) 98 2iss_D Glutamine amidotransfer 37.1 17 0.00073 14.9 5.1 45 1-56 21-65 (208) 99 1vb5_A Translation initiation 36.9 18 0.00074 14.9 3.4 102 115-218 109-220 (276) 100 3ha2_A NADPH-quinone reductase 36.7 13 0.00053 15.7 1.7 56 1-58 1-61 (177) 101 2nac_A NAD-dependent formate d 36.6 18 0.00075 14.8 7.0 157 15-177 59-258 (393) 102 3k4h_A Putative transcriptiona 36.4 18 0.00075 14.8 7.9 180 14-200 34-230 (292) 103 3ko8_A NAD-dependent epimerase 36.1 18 0.00076 14.8 4.2 29 1-29 1-30 (312) 104 1usg_A Leucine-specific bindin 35.7 18 0.00077 14.8 8.9 98 97-195 119-223 (346) 105 3npg_A Uncharacterized DUF364 35.7 18 0.00077 14.8 7.7 141 74-229 82-231 (249) 106 3m2p_A UDP-N-acetylglucosamine 35.5 19 0.00078 14.7 4.2 29 1-29 3-32 (311) 107 3cs3_A Sugar-binding transcrip 35.3 19 0.00078 14.7 11.8 169 14-199 29-214 (277) 108 1t0i_A YLR011WP; FMN binding p 35.0 19 0.00079 14.7 4.9 58 1-58 1-94 (191) 109 1iuk_A Hypothetical protein TT 34.5 19 0.00081 14.6 2.8 49 165-213 69-121 (140) 110 1xrs_B D-lysine 5,6-aminomutas 33.2 20 0.00085 14.5 3.0 115 116-231 120-259 (262) 111 1lss_A TRK system potassium up 31.5 22 0.00091 14.3 6.6 28 1-28 5-32 (140) 112 1lk5_A D-ribose-5-phosphate is 30.9 22 0.00093 14.3 3.9 14 157-170 190-203 (229) 113 3hhe_A Ribose-5-phosphate isom 30.8 22 0.00093 14.3 4.9 43 47-89 40-88 (255) 114 1wdi_A Hypothetical protein TT 30.5 22 0.00094 14.2 7.3 88 114-209 175-268 (345) 115 2pln_A HP1043, response regula 30.4 23 0.00095 14.2 7.8 27 117-143 19-46 (137) 116 3e3m_A Transcriptional regulat 29.9 23 0.00097 14.2 11.6 99 101-200 173-288 (355) 117 1e5d_A Rubredoxin\:oxygen oxid 29.7 23 0.00097 14.1 8.0 110 113-227 249-385 (402) 118 3dqp_A Oxidoreductase YLBE; al 28.6 24 0.001 14.0 3.7 29 1-29 1-30 (219) 119 1req_A Methylmalonyl-COA mutas 28.2 25 0.001 14.0 7.0 100 126-230 611-720 (727) 120 3fro_A GLGA glycogen synthase; 27.7 25 0.0011 13.9 4.8 29 1-29 3-41 (439) 121 1qp8_A Formate dehydrogenase; 27.4 25 0.0011 13.9 2.7 64 114-177 122-185 (303) 122 3e8x_A Putative NAD-dependent 27.2 26 0.0011 13.9 4.5 29 1-29 22-51 (236) 123 3e61_A Putative transcriptiona 26.8 26 0.0011 13.8 9.5 171 14-198 29-213 (277) 124 2xij_A Methylmalonyl-COA mutas 26.7 26 0.0011 13.8 9.4 110 112-227 600-725 (762) 125 2h1q_A Hypothetical protein; Z 25.9 27 0.0011 13.7 5.9 110 114-230 139-253 (270) 126 3jvd_A Transcriptional regulat 25.4 28 0.0012 13.7 8.2 93 103-199 162-268 (333) 127 3lop_A Substrate binding perip 25.3 28 0.0012 13.7 9.0 98 98-197 124-228 (364) 128 3gfs_A FMN-dependent NADPH-azo 25.2 28 0.0012 13.7 2.1 25 1-26 1-29 (174) 129 1mio_A Nitrogenase molybdenum 24.6 29 0.0012 13.6 9.0 133 10-147 219-366 (533) 130 2o20_A Catabolite control prot 24.4 29 0.0012 13.6 7.9 98 101-199 166-276 (332) 131 1kew_A RMLB;, DTDP-D-glucose 4 24.2 29 0.0012 13.5 3.9 28 1-28 1-29 (361) 132 3k31_A Enoyl-(acyl-carrier-pro 24.2 29 0.0012 13.5 5.4 28 2-29 32-62 (296) 133 1l9x_A Gamma-glutamyl hydrolas 24.0 26 0.0011 13.9 1.5 41 14-58 56-96 (315) 134 1ycg_A Nitric oxide reductase; 23.9 29 0.0012 13.5 9.8 92 131-227 272-385 (398) 135 3bh1_A UPF0371 protein DIP2346 23.9 30 0.0012 13.5 4.5 56 2-57 114-181 (507) 136 2a5l_A Trp repressor binding p 23.8 30 0.0013 13.5 3.6 57 2-58 7-81 (200) 137 3ksm_A ABC-type sugar transpor 23.6 30 0.0013 13.5 8.8 198 14-223 21-247 (276) 138 2vzf_A NADH-dependent FMN redu 23.5 30 0.0013 13.5 4.1 14 20-33 31-44 (197) 139 2dc1_A L-aspartate dehydrogena 23.3 30 0.0013 13.4 6.0 129 1-153 1-135 (236) 140 1rtt_A Conserved hypothetical 23.3 30 0.0013 13.4 2.8 29 1-29 7-42 (193) 141 1q7r_A Predicted amidotransfer 22.4 32 0.0013 13.3 5.9 46 1-57 24-69 (219) 142 1m0s_A Ribose-5-phosphate isom 22.2 32 0.0013 13.3 5.7 43 48-90 20-66 (219) 143 2o8n_A APOA-I binding protein; 21.9 32 0.0014 13.3 4.1 59 86-144 46-111 (265) 144 1rli_A Trp repressor binding p 21.8 33 0.0014 13.3 4.4 57 1-58 4-81 (184) 145 3a11_A Translation initiation 21.4 33 0.0014 13.2 3.4 103 113-217 139-251 (338) 146 2ohh_A Type A flavoprotein FPR 21.4 33 0.0014 13.2 12.4 109 114-227 254-391 (404) 147 1mio_B Nitrogenase molybdenum 21.4 33 0.0014 13.2 9.4 198 9-213 181-407 (458) 148 3h7a_A Short chain dehydrogena 21.3 33 0.0014 13.2 4.2 28 3-30 10-38 (252) 149 3ktd_A Prephenate dehydrogenas 21.2 33 0.0014 13.2 5.1 27 3-29 11-37 (341) 150 2gek_A Phosphatidylinositol ma 20.8 34 0.0014 13.1 4.8 29 1-29 21-58 (406) 151 3dhn_A NAD-dependent epimerase 20.5 35 0.0015 13.1 4.5 29 1-29 5-34 (227) 152 1jay_A Coenzyme F420H2:NADP+ o 20.3 35 0.0015 13.1 4.2 29 1-29 1-30 (212) 153 3en0_A Cyanophycinase; serine 20.3 35 0.0015 13.1 2.9 57 9-65 70-127 (291) 154 2x4g_A Nucleoside-diphosphate- 20.1 35 0.0015 13.1 4.5 29 1-29 14-43 (342) 155 3oh8_A Nucleoside-diphosphate 20.1 35 0.0015 13.0 6.3 56 1-56 148-209 (516) 156 3egc_A Putative ribose operon 20.1 35 0.0015 13.0 9.6 179 13-199 28-223 (291) No 1 >1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1 Probab=100.00 E-value=4.9e-44 Score=282.24 Aligned_cols=227 Identities=16% Similarity=0.205 Sum_probs=194.2 Q ss_pred CEE-EEECCHHHH---HHHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHH------ Q ss_conf 938-985896886---99999999879829994210000078520---01644758799984846799988620------ Q gi|255764510|r 1 MYI-VITRPIKKA---LRTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANF------ 67 (232) Q Consensus 1 M~i-litRp~~~a---~~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~------ 67 (232) ||| |++||.++. +.+...|+++|++++.+|+|+|+|.+.+. .+.++.+||||||||+|||++|+..+ T Consensus 22 ~~vlll~~~~~~~~~~d~~~~~L~~~G~~~~~~Pli~i~~~~~~~l~~~~~~l~~y~~iIFTS~naV~~f~~~l~~~~~~ 101 (286) T 1jr2_A 22 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKT 101 (286) T ss_dssp CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCH T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCEEEEECCHHHHHHHHHCHHHCCEEEEECHHHHHHHHHHHHHHCCC T ss_conf 08999778987666548999999988997899899888838758999987283115789997869999999999873664 Q ss_pred ----------CCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH Q ss_conf ----------0136300041589999764101223544454567899986422012777538972156756201468984 Q gi|255764510|r 68 ----------CRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIE 137 (232) Q Consensus 68 ----------~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~ 137 (232) +...+++|+|++|++++++.|+....+..++++.+.+++... ...+++++++||+.++++|.+.|++ T Consensus 102 ~~~~~~l~~~~~~~~i~aVG~~Ta~~L~~~G~~~~~~~~~~ae~L~~~i~~~---~~~~~~iL~~~g~~~~~~L~~~L~~ 178 (286) T 1jr2_A 102 EVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICSR---ESSALPLLFPCGNLKREILPKALKD 178 (286) T ss_dssp HHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCSCCSCSSHHHHHHHHHTS---CCCSSCEEEEESCGGGCCHHHHHHT T ss_pred CHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH---CCCCCEEEEEECCCCHHHHHHHHHH T ss_conf 0124555430147859998779999999869910067888999999999875---2689759986056650789999984 Q ss_pred CCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHH----CCEEEEECCHHHHHHHHHCCC Q ss_conf 698256768875046899988999862---3783899807899999997135440----580399718899999997699 Q gi|255764510|r 138 HKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLPLPAK----ISAAFLCLSNNIASAIPASYK 210 (232) Q Consensus 138 ~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~----~~~~~~~ig~~tA~~~~~~g~ 210 (232) .|+.|+++++|++++.+...+.+...+ +.+|+|+||||++|+.|++++.... .+++++|||++||+++++.|+ T Consensus 179 ~G~~v~~~~vY~t~~~~~~~~~~~~~l~~~~~~d~VvFtSps~v~~f~~~l~~~~~~~~~~~~i~aIG~~Ta~~l~~~G~ 258 (286) T 1jr2_A 179 KGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGL 258 (286) T ss_dssp TTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESSHHHHHHHHHTTC T ss_pred CCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCC T ss_conf 79855699887221487421889999873268729999398999999999987303243681899989999999998699 Q ss_pred CEEEECCCCCHHHHHHHHHH Q ss_conf 66998799998899999861 Q gi|255764510|r 211 NVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 211 ~~~~va~~p~~~~ll~al~~ 230 (232) +++++|+.|+.++|+++|.+ T Consensus 259 ~~~iva~~pt~e~Ll~aI~~ 278 (286) T 1jr2_A 259 PVSCTAESPTPQALATGIRK 278 (286) T ss_dssp CCSEECSSSSHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHH T ss_conf 73799797897999999999 No 2 >3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis} Probab=100.00 E-value=3.7e-42 Score=270.95 Aligned_cols=229 Identities=14% Similarity=0.114 Sum_probs=195.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCC-CCCCCCCCEEEEECHHHHHHHHHHH---CCCCCEECC Q ss_conf 938985896886999999998798299942100000785200-1644758799984846799988620---013630004 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVF-LAMQQSYGAIAITSSESLSTLPANF---CRHTPIFAI 76 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~-~~~~~~~d~iiftS~~av~~~~~~~---~~~~~~~~v 76 (232) ||||||||.+++.+++..|+++|++++++|+++++|.+.... +..+.+||||||||++||+++.... ..+.+++|+ T Consensus 2 ~~IlitRp~~~~~~l~~~L~~~G~~~~~~Pli~i~~~~~~~~~l~~l~~~d~iIftS~~av~~~~~~~~~~~~~~~~~av 81 (240) T 3mw8_A 2 MKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAV 81 (240) T ss_dssp CCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEES T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 79999085788899999999889959994776667240309998520248999998889999999987763468859998 Q ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCC Q ss_conf 15899997641012235444545678999864220127775389721567562014689846982567688750468999 Q gi|255764510|r 77 GEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP 156 (232) Q Consensus 77 g~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~ 156 (232) |+.|++++.+.|+...............+ .........+.++++++|..+++.+.+.|+..|+.|+++++|++++.... T Consensus 82 G~~Ta~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~~~~~~~~~~l~~~l~~~g~~v~~~~~Y~~~~~~~~ 160 (240) T 3mw8_A 82 GDATADALALQGITAERSPADSQATEGLL-TLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLD 160 (240) T ss_dssp SHHHHHHHHHTTCCCEECC---CCGGGGG-GCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCC T ss_pred CHHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCC T ss_conf 38999999985997643676304788875-04554125787589853776632578999867986999987555458756 Q ss_pred HHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 88999862--37838998078999999971354405----8039971889999999769966998799998899999861 Q gi|255764510|r 157 ETTMKNLL--QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 157 ~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) .......+ +.+|+|+|||++++++|++++..+.. +.+++|+|++||+++++.||++++++++|+.++|++||.. T Consensus 161 ~~~~~~~~~~~~~d~v~f~S~~~v~~~~~~~~~~~~~~~~~~~~~~ig~~~a~~~~~~G~~~v~va~~p~~~~l~~al~~ 240 (240) T 3mw8_A 161 APASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVTNAGAANQAAVLDALGM 240 (240) T ss_dssp HHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSHHHHHHHHHTTCCCEEECSSSSHHHHHHHHTC T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCC T ss_conf 58999999828998999789999999999855531577619989998899999999759981688999898999998676 No 3 >3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A Probab=100.00 E-value=2.1e-42 Score=272.44 Aligned_cols=223 Identities=15% Similarity=0.082 Sum_probs=185.7 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCC----CCCCCCCCEEEEECHHHHHHHHHHH--------- Q ss_conf 938985896886999999998798299942100000785200----1644758799984846799988620--------- Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVF----LAMQQSYGAIAITSSESLSTLPANF--------- 67 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~----~~~~~~~d~iiftS~~av~~~~~~~--------- 67 (232) |||+||||+ ++++++.+|+++|++++.+|++++++++++.. ...+++|||+||||+|||++|+... T Consensus 34 ~ri~vtr~r-qa~~l~~lle~~G~~~i~~P~i~i~~~~~~~~~~~~~~~l~~~dwivFTS~ngV~~f~~~l~~~~~d~r~ 112 (286) T 3d8t_A 34 MRIAYAGLR-RKEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEG 112 (286) T ss_dssp CEEEECCSS-CHHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHH T ss_pred CEEEEECCC-HHHHHHHHHHHCCCEEEEECCEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHHHH T ss_conf 368880615-1899999999769939981263147289756799999761589999996868999999999974956888 Q ss_pred -CCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEE Q ss_conf -0136300041589999764101223544454567899986422012777538972156756201468984698256768 Q gi|255764510|r 68 -CRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVID 146 (232) Q Consensus 68 -~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~ 146 (232) ..+.+++|+|++|++++++.|......+.+.++.+.+.+ . ...+.++++.++.++++|.+.|++.|+.|++++ T Consensus 113 ~l~~~kiaAvG~kTa~aL~~~Gl~~d~~pe~~ae~Ll~~l----~--~~~~~~~v~~~g~~~~~L~~~L~~~G~~V~~v~ 186 (286) T 3d8t_A 113 PLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLL----P--QGRGVAALQLYGKPLPLLENALAERGYRVLPLM 186 (286) T ss_dssp HHHHSEEEESSHHHHHHHHHTTCCCSEECSSSGGGGGGGC----C--CCCSEEEEECSSSCCHHHHHHHHHTTCEEEEEC T ss_pred HHCCCEEEEECHHHHHHHHHCCCCCEECCCCHHHHHHHHH----H--HCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEE T ss_conf 7449879999969999999769981678955399999977----4--069789997489882789999997899878997 Q ss_pred EEEECCCCCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-------CCEEEEECCHHHHHHHHHCCCCEEEECC Q ss_conf 875046899988999862--3783899807899999997135440-------5803997188999999976996699879 Q gi|255764510|r 147 CYYSQDIAYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-------ISAAFLCLSNNIASAIPASYKNVVTVAC 217 (232) Q Consensus 147 vY~~~~~~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-------~~~~~~~ig~~tA~~~~~~g~~~~~va~ 217 (232) +|++++.+...+.+...+ +++|+|+|||+++|++|++++.... .++.++||||.||+++++.|++++++++ T Consensus 187 ~Y~t~~~~~~~~~l~~~l~~~~vD~V~FtS~s~v~~f~~~~~~~~~l~~~l~~~~~v~aIGp~Ta~al~~~Gi~~~v~pe 266 (286) T 3d8t_A 187 PYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDE 266 (286) T ss_dssp SEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHHHHTTTSEEEEESHHHHHHHHHTTCCCSEEEC T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEEC T ss_conf 99971787426899999745884099974999999999987652235787437978999899999999985998569718 Q ss_pred CCCHHHHHHHHHH Q ss_conf 9998899999861 Q gi|255764510|r 218 FPKETSLLKLLPL 230 (232) Q Consensus 218 ~p~~~~ll~al~~ 230 (232) .|+.++|+++|++ T Consensus 267 ~~t~~~Lv~al~~ 279 (286) T 3d8t_A 267 TERLGSLLQGFKR 279 (286) T ss_dssp SSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 9998999999999 No 4 >1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A Probab=100.00 E-value=3.1e-39 Score=253.41 Aligned_cols=223 Identities=15% Similarity=0.066 Sum_probs=183.2 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCC----CCCCCCCEEEEECHHHHHHHHHHHC-------- Q ss_conf 9389858968869999999987982999421000007852001----6447587999848467999886200-------- Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFL----AMQQSYGAIAITSSESLSTLPANFC-------- 68 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~----~~~~~~d~iiftS~~av~~~~~~~~-------- 68 (232) |||++|.++ +++.+..+|+++|++++.+|++++++++..... .....|||+||||+|||++|+.... T Consensus 9 ~r~~~~~~r-~~e~~~~lle~~G~~pi~~P~i~i~~~p~~~~~~~~~~~~~~~D~vifTS~n~V~~~~~~l~~~g~~~~~ 87 (261) T 1wcw_A 9 VRVAYAGLR-RKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEG 87 (261) T ss_dssp CEEEECCST-THHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHH T ss_pred CEEEECCHH-HHHHHHHHHHHCCCEEEECCHHHEECCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHH T ss_conf 289861323-2899999999779949980546626589214578999732799999997989999999999873940777 Q ss_pred --CCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEE Q ss_conf --136300041589999764101223544454567899986422012777538972156756201468984698256768 Q gi|255764510|r 69 --RHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVID 146 (232) Q Consensus 69 --~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~ 146 (232) .+.+++|+|++|++++.+.|+.....+.+.++. ++.. .. ...+.+++++++.++++|.+.|++.|+.|.+++ T Consensus 88 ~l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~~~s~~---l~~~-l~--~~~~~~~~~~~~~~~~~L~~~L~~~G~~V~~v~ 161 (261) T 1wcw_A 88 PLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKS---LLPL-LP--QGRGVAALQLYGKPLPLLENALAERGYRVLPLM 161 (261) T ss_dssp HHHHSEEEESSHHHHHHHHHTTCCCSEECSSSHHH---HGGG-SC--CCCEEEEEECCSSCCHHHHHHHHHTTEEEEEEC T ss_pred HHCCCEEEEECHHHHHHHHHCCCCCEECCCCCHHH---HHHH-HC--CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEE T ss_conf 84398799999899999997799855479731589---9987-50--489589997289881789999997899899998 Q ss_pred EEEECCCCCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-------CCEEEEECCHHHHHHHHHCCCCEEEECC Q ss_conf 875046899988999862--3783899807899999997135440-------5803997188999999976996699879 Q gi|255764510|r 147 CYYSQDIAYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-------ISAAFLCLSNNIASAIPASYKNVVTVAC 217 (232) Q Consensus 147 vY~~~~~~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-------~~~~~~~ig~~tA~~~~~~g~~~~~va~ 217 (232) +|++++.+.....+...+ +++|+|+|||++++++|++++.... ..+.++||||.|++++++.|++++++++ T Consensus 162 ~Y~t~~~~~~~~~l~~~l~~~~~D~V~ftS~s~v~~f~~~~~~~~~l~~~l~~~~~v~aIGp~Ta~al~~~G~~~~~~~~ 241 (261) T 1wcw_A 162 PYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDE 241 (261) T ss_dssp SEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHHHHHHHHTSEEEEESHHHHHHHHHTTCCCSEEEC T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEECC T ss_conf 99983686456899998744781199957999999999986542045787427978999899999999986998579759 Q ss_pred CCCHHHHHHHHHH Q ss_conf 9998899999861 Q gi|255764510|r 218 FPKETSLLKLLPL 230 (232) Q Consensus 218 ~p~~~~ll~al~~ 230 (232) .|+.++|+++|++ T Consensus 242 ~~~~~~lv~al~~ 254 (261) T 1wcw_A 242 TERLGSLLQGFKR 254 (261) T ss_dssp SCCHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 9998999999999 No 5 >3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori} Probab=100.00 E-value=4.6e-32 Score=210.38 Aligned_cols=200 Identities=17% Similarity=0.172 Sum_probs=157.4 Q ss_pred CEEEECCEEEECCCC----CC----CCCCCCCCCEEEEECHHHHHHHHHHH--------CCCCCEECCCHHHHHHHHHHC Q ss_conf 299942100000785----20----01644758799984846799988620--------013630004158999976410 Q gi|255764510|r 25 IPVMMPLSYFIHDRE----SV----FLAMQQSYGAIAITSSESLSTLPANF--------CRHTPIFAIGEASACLARQKG 88 (232) Q Consensus 25 ~~i~~Pli~i~~~~~----~~----~~~~~~~~d~iiftS~~av~~~~~~~--------~~~~~~~~vg~~t~~~~~~~~ 88 (232) +++..+..+|.|.+. .. ...++.+||||||||+|||++++... .++.+++|+|++|++++++.| T Consensus 6 ~~~~~~~~~i~~~~~~~l~~i~~~~~~~~l~~yd~iIfTS~naV~~~~~~l~~~~~~~~~~~~~i~aVG~~Ta~~l~~~G 85 (229) T 3p9z_A 6 EIVWVHSQRIAPYKTLILNEFCYYPLELDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDHH 85 (229) T ss_dssp CEEEESSSCCTTSEEECCEEEEECCCCSCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHTT T ss_pred EEEEECCCEECCCCCEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHC T ss_conf 17884461635766311300431777638554999999888999999999876444312269859999799999999709 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCC Q ss_conf 1223544454567899986422012777538972156756201468984698256768875046899988999862-378 Q gi|255764510|r 89 FTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNA 167 (232) Q Consensus 89 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~ 167 (232) +.....+..... +.+.+......++++++++||..++++|.+.|.++|++|+++++|++++.+........+. +++ T Consensus 86 ~~~~~~~~~~~~---~~L~~~~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~ 162 (229) T 3p9z_A 86 FKVAFMGEKAHG---KEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEK 162 (229) T ss_dssp CCBCCCCC------------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTT T ss_pred CCCCCCCCCHHH---HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCC T ss_conf 955315643068---89999765422797699974765507899999866997135778773288779899999855899 Q ss_pred CEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 38998078999999971354405803997188999999976996699879999889999986 Q gi|255764510|r 168 DAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 168 d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) |+|+|||++++++|++.+... .+.+++|||++||+++++.|++ +.+++.|+.++|++++. T Consensus 163 ~~I~f~S~ssv~~f~~~~~~~-~~~~vi~IG~~ta~~l~~~g~~-~~v~~~ps~~~li~~a~ 222 (229) T 3p9z_A 163 SILIFTAISHAKAFLHYFEFL-ENYTAISIGNTTALYLQEQGIP-SYIAKKPSLEACLELAL 222 (229) T ss_dssp CEEEECSHHHHHHHHHHSCCC-TTCEEEESSHHHHHHHHHTTCC-EEECSSSSHHHHHHHHH T ss_pred CEEEECCHHHHHHHHHHHHCC-CCCEEEEECHHHHHHHHHCCCC-EEECCCCCHHHHHHHHH T ss_conf 889954999999999973033-7979999999999999976995-69849999899999999 No 6 >3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis} Probab=99.13 E-value=2e-10 Score=80.53 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=90.0 Q ss_pred CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEE Q ss_conf 75389721567562014689846982567688750468999889998623783899807899999997135440580399 Q gi|255764510|r 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFL 195 (232) Q Consensus 116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~ 195 (232) |.+|++.+..+....+.+.|++.|+.+...++-+.++.+.....+. .+.+.|+++|+|+.+++.|++.+.....+.+++ T Consensus 1 G~~IlitRp~~~~~~l~~~L~~~G~~~~~~Pli~i~~~~~~~~~l~-~l~~~d~iIftS~~av~~~~~~~~~~~~~~~~~ 79 (240) T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLD-ELSRADILIFISTSAVSFATPWLKDQWPKATYY 79 (240) T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHH-HHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEE T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHH-HHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEE T ss_conf 9799990857888999999998899599947766672403099985-202489999988899999999877634688599 Q ss_pred ECCHHHHHHHHHCCCCEEEECCCCCHH Q ss_conf 718899999997699669987999988 Q gi|255764510|r 196 CLSNNIASAIPASYKNVVTVACFPKET 222 (232) Q Consensus 196 ~ig~~tA~~~~~~g~~~~~va~~p~~~ 222 (232) |+|+.|++++++.|+.+...+...... T Consensus 80 avG~~Ta~~l~~~g~~~~~~~~~~~~~ 106 (240) T 3mw8_A 80 AVGDATADALALQGITAERSPADSQAT 106 (240) T ss_dssp ESSHHHHHHHHHTTCCCEECC---CCG T ss_pred EECHHHHHHHHHCCCCCCCCCCCCHHH T ss_conf 983899999998599764367630478 No 7 >3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A Probab=99.12 E-value=1.4e-10 Score=81.57 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=89.6 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH--HHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC-- Q ss_conf 7753897215675620146898469825676887504689998--899986237838998078999999971354405-- Q gi|255764510|r 115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE--TTMKNLLQNADAILFYARSSVLYFFSLPLPAKI-- 190 (232) Q Consensus 115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~--~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~-- 190 (232) =+.+|++.+.. ..+.+.+.|++.|+.+..+++=+.++.++.. +.....+++.||++|||+.+|+.|++.+...+. T Consensus 32 f~~ri~vtr~r-qa~~l~~lle~~G~~~i~~P~i~i~~~~~~~~~~~~~~~l~~~dwivFTS~ngV~~f~~~l~~~~~d~ 110 (286) T 3d8t_A 32 FTMRIAYAGLR-RKEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDL 110 (286) T ss_dssp -CCEEEECCSS-CHHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCC T ss_pred CCCEEEEECCC-HHHHHHHHHHHCCCEEEEECCEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHH T ss_conf 77368880615-18999999997699399812631472897567999997615899999968689999999999749568 Q ss_pred -----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf -----803997188999999976996699879999889999986 Q gi|255764510|r 191 -----SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 191 -----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) +.+++|+|+.|++++++.|+.+..+++ .+.++|++.+. T Consensus 111 r~~l~~~kiaAvG~kTa~aL~~~Gl~~d~~pe-~~ae~Ll~~l~ 153 (286) T 3d8t_A 111 EGPLAKAFRLARGAKAARALKEAGLPPHAVGD-GTSKSLLPLLP 153 (286) T ss_dssp HHHHHHSEEEESSHHHHHHHHHTTCCCSEECS-SSGGGGGGGCC T ss_pred HHHHCCCEEEEECHHHHHHHHHCCCCCEECCC-CHHHHHHHHHH T ss_conf 88744987999996999999976998167895-53999999774 No 8 >1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A Probab=99.08 E-value=4.6e-10 Score=78.37 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=87.5 Q ss_pred CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC--CCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC--- Q ss_conf 753897215675620146898469825676887504689--998899986237838998078999999971354405--- Q gi|255764510|r 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA--YPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKI--- 190 (232) Q Consensus 116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~--~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~--- 190 (232) +.++. ++|....+.+...|++.|+.+...++=+.++.+ ...+.+....++.||++|||+.+|+.|++.+...+. T Consensus 8 ~~r~~-~~~~r~~e~~~~lle~~G~~pi~~P~i~i~~~p~~~~~~~~~~~~~~~D~vifTS~n~V~~~~~~l~~~g~~~~ 86 (261) T 1wcw_A 8 AVRVA-YAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLE 86 (261) T ss_dssp CCEEE-ECCSTTHHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCH T ss_pred CCEEE-ECCHHHHHHHHHHHHHCCCEEEECCHHHEECCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHH T ss_conf 82898-61323289999999977994998054662658921457899973279999999798999999999987394077 Q ss_pred ----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf ----8039971889999999769966998799998899999861 Q gi|255764510|r 191 ----SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 191 ----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) +.+++|+|+.||+++++.|+.++.+++ .+.+.+++.+.. T Consensus 87 ~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~-~~s~~l~~~l~~ 129 (261) T 1wcw_A 87 GPLAKAFRLARGAKAARALKEAGLPPHAVGD-GTSKSLLPLLPQ 129 (261) T ss_dssp HHHHHSEEEESSHHHHHHHHHTTCCCSEECS-SSHHHHGGGSCC T ss_pred HHHCCCEEEEECHHHHHHHHHCCCCCEECCC-CCHHHHHHHHCC T ss_conf 7843987999998999999977998554797-315899987504 No 9 >1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1 Probab=99.03 E-value=2.1e-09 Score=74.46 Aligned_cols=114 Identities=10% Similarity=0.009 Sum_probs=88.5 Q ss_pred CCCEEEEECCCCCC----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCH Q ss_conf 77538972156756----201468984698256768875046899988999862---37838998078999999971354 Q gi|255764510|r 115 PQKPLIYLGGKPRN----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLPLP 187 (232) Q Consensus 115 ~~~~vl~~~g~~~~----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~ 187 (232) +..++++++..... +.+.+.|++.|+.+..+++=+.++.. .+.+...+ .+.|+|+|||+.+|++|++.+.. T Consensus 20 ~~~~vlll~~~~~~~~~~d~~~~~L~~~G~~~~~~Pli~i~~~~--~~~l~~~~~~l~~y~~iIFTS~naV~~f~~~l~~ 97 (286) T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS--LPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQ 97 (286) T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC--HHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCEEEEECC--HHHHHHHHHCHHHCCEEEEECHHHHHHHHHHHHH T ss_conf 83089997789876665489999999889978998998888387--5899998728311578999786999999999987 Q ss_pred HH-------------CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC Q ss_conf 40-------------580399718899999997699669987999988999998614 Q gi|255764510|r 188 AK-------------ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLR 231 (232) Q Consensus 188 ~~-------------~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~ 231 (232) .+ .+.+++|+|+.||+++++.|++++ +++..+-++|++.|... T Consensus 98 ~~~~~~~~~~l~~~~~~~~i~aVG~~Ta~~L~~~G~~~~-~~~~~~ae~L~~~i~~~ 153 (286) T 1jr2_A 98 NNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTE-GETCGNAEKLAEYICSR 153 (286) T ss_dssp TTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCS-CCSCSSHHHHHHHHHTS T ss_pred HCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEE-CCCCCCHHHHHHHHHHH T ss_conf 366401245554301478599987799999998699100-67888999999999875 No 10 >3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori} Probab=98.60 E-value=1.4e-07 Score=63.56 Aligned_cols=108 Identities=8% Similarity=0.028 Sum_probs=83.1 Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCC---CCCCCCCCEEEEECHHHHHHHHHHH--CCCCCEECC Q ss_conf 38985896886999999998798299942100000785200---1644758799984846799988620--013630004 Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVF---LAMQQSYGAIAITSSESLSTLPANF--CRHTPIFAI 76 (232) Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~---~~~~~~~d~iiftS~~av~~~~~~~--~~~~~~~~v 76 (232) +||+.|.......+.+.|.+.|+++..+++.+.++...... .......|+|+|||+.+|+.|.... .....++|+ T Consensus 112 ~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~I~f~S~ssv~~f~~~~~~~~~~~vi~I 191 (229) T 3p9z_A 112 SVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAISHAKAFLHYFEFLENYTAISI 191 (229) T ss_dssp EEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHHHHHHHHHHSCCCTTCEEEES T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 69997476550789999986699713577877328877989999985589988995499999999997303379799999 Q ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 158999976410122354445456789998642 Q gi|255764510|r 77 GEASACLARQKGFTQIFHGKDNSINLAKIIVEQ 109 (232) Q Consensus 77 g~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 109 (232) |+.|++++.+.|+........+.+.+.+++... T Consensus 192 G~~ta~~l~~~g~~~~v~~~ps~~~li~~a~~l 224 (229) T 3p9z_A 192 GNTTALYLQEQGIPSYIAKKPSLEACLELALSL 224 (229) T ss_dssp SHHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT T ss_pred CHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHH T ss_conf 999999999769956984999989999999997 No 11 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Probab=96.80 E-value=0.0027 Score=37.74 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=90.9 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCE---ECC Q ss_conf 9389858968869999999987982999421000007852001644758799984846799-988620013630---004 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPI---FAI 76 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~---~~v 76 (232) ||||+|-|.+ +...+.|++.|+++...|-.. .+.....+.++|+++.++..-+. -+..... ..++ ... T Consensus 6 mkili~~~~~--~~~~~~l~~~~~~v~~~~~~~-----~ee~~~~i~~~d~li~~~~~~i~~~~l~~~~-~Lk~I~~~~~ 77 (313) T 2ekl_A 6 VKALITDPID--EILIKTLREKGIQVDYMPEIS-----KEELLNIIGNYDIIVVRSRTKVTKDVIEKGK-KLKIIARAGI 77 (313) T ss_dssp CEEEECSCCC--HHHHHHHHHTTCEEEECTTCC-----HHHHHHHGGGCSEEEECSSSCBCHHHHHHCT-TCCEEEECSS T ss_pred EEEEEECCCC--HHHHHHHHHCCCEEEECCCCC-----HHHHHHHHCCCCEEEECCCCCCCHHHHHHCC-CCEEEEECCC T ss_conf 0899979999--999999997798899889999-----9999998389819998889988999995198-9779988981 Q ss_pred CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-----------------------HHCCCCCCEEEEECCCCCCCCH Q ss_conf 158--999976410122354445456789998642-----------------------2012777538972156756201 Q gi|255764510|r 77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-----------------------KVLFTPQKPLIYLGGKPRNFHF 131 (232) Q Consensus 77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----------------------~~~~~~~~~vl~~~g~~~~~~l 131 (232) |-. -...+.+.+......+...+...++..... ......++++.++.-......+ T Consensus 78 G~d~id~~~~~~~~i~v~~~~g~~~~~vaE~~~~~~l~l~r~~~~~~~~~~~g~~~~~~~~~L~gktvgIiG~G~IG~~v 157 (313) T 2ekl_A 78 GLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKV 157 (313) T ss_dssp CCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHH T ss_pred CCCCCCCHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHH T ss_conf 64516510155437015637987719999999999998751437788875348855567766799999998979899999 Q ss_pred HHHHHHCCCEEEEEEEEEECCCCC-------CHHHHHHHHCCCCEEEEECHHHH Q ss_conf 468984698256768875046899-------98899986237838998078999 Q gi|255764510|r 132 EDYLIEHKIPLRVIDCYYSQDIAY-------PETTMKNLLQNADAILFYARSSV 178 (232) Q Consensus 132 ~~~L~~~g~~v~~~~vY~~~~~~~-------~~~~~~~~~~~~d~i~f~S~~~v 178 (232) .+.|+..|..|. .|....... ....+.+++.+.|+|++.-|.+- T Consensus 158 a~~l~~fg~~v~---~~~~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~plt~ 208 (313) T 2ekl_A 158 GIIANAMGMKVL---AYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSK 208 (313) T ss_dssp HHHHHHTTCEEE---EECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCT T ss_pred HHHHHHCCCEEE---EECCCCCHHHHCCCCCCCCCHHHHHHHCCEEEECCCCCC T ss_conf 999986698689---726877566630256555889999864999985263332 No 12 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} Probab=96.56 E-value=0.0025 Score=37.94 Aligned_cols=166 Identities=12% Similarity=0.118 Sum_probs=89.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH--HHHHHHHCCCCCE---EC Q ss_conf 938985896886999999998798299942100000785200164475879998484679--9988620013630---00 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL--STLPANFCRHTPI---FA 75 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av--~~~~~~~~~~~~~---~~ 75 (232) ||||||++.++ ...+.|+++|.++...+- ...+.+.....+.++|+++.++..-+ +.+. ... ..++ .. T Consensus 1 MkIli~~~~~~--~~~~~L~~~~~~v~~~~~---~~~~~~e~~~~~~~~d~ii~~~~~~i~~~~l~-~~p-nLK~I~~~~ 73 (311) T 2cuk_A 1 MRVLVTRTLPG--KALDRLRERGLEVEVHRG---LFLPKAELLKRVEGAVGLIPTVEDRIDAEVMD-RAK-GLKVIACYS 73 (311) T ss_dssp CEEEESSCCSS--STTHHHHHTTCEEEECCS---SCCCHHHHHHHHTTCSEEECCTTSCBCHHHHH-HST-TCCEEECSS T ss_pred CEEEEECCCCH--HHHHHHHHCCCEEEEECC---CCCCHHHHHHHCCCCEEEEECCCCCCCHHHHH-CCC-CCEEEEECC T ss_conf 98999178999--999999847998998179---98998999987499859998999987999993-399-985999888 Q ss_pred CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHH-------------------HHH---------CCCCCCEEEEECCC Q ss_conf 4158--99997641012235444545678999864-------------------220---------12777538972156 Q gi|255764510|r 76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVE-------------------QKV---------LFTPQKPLIYLGGK 125 (232) Q Consensus 76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~-------------------~~~---------~~~~~~~vl~~~g~ 125 (232) +|-. -..++.+.+......+...+...++.... .+. ....++++.++.-. T Consensus 74 aG~D~Id~~~~~~~gi~v~n~~~~~~~~vaE~~~~lll~l~r~i~~~~~~~~~~~w~~~~~~~~~g~~l~gk~vgIiG~G 153 (311) T 2cuk_A 74 VGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMG 153 (311) T ss_dssp SCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS T ss_pred CCCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEC T ss_conf 30375077789866946741799740667777766668877153178999871753335754545532469989998078 Q ss_pred CCCCCHHHHHHHCCCEEEEEEEEEECCCC--CCHHHHHHHHCCCCEEEEECHH Q ss_conf 75620146898469825676887504689--9988999862378389980789 Q gi|255764510|r 126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIA--YPETTMKNLLQNADAILFYARS 176 (232) Q Consensus 126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~--~~~~~~~~~~~~~d~i~f~S~~ 176 (232) .....+.+.|+..|..|. .|.....+ .....+.+++.+.|+|++.-|. T Consensus 154 ~IG~~~a~~l~~fg~~v~---~~~~~~~~~~~~~~~l~ell~~sDiv~~~~pl 203 (311) T 2cuk_A 154 RIGQAVAKRALAFGMRVV---YHARTPKPLPYPFLSLEELLKEADVVSLHTPL 203 (311) T ss_dssp HHHHHHHHHHHHTTCEEE---EECSSCCSSSSCBCCHHHHHHHCSEEEECCCC T ss_pred HHHHHHHHHHHHCCCEEE---EECCCCCCCCCCCCCHHHHHHHCCEEEECCCC T ss_conf 899999999985899899---98898444687667999999769999993889 No 13 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Probab=96.29 E-value=0.017 Score=32.99 Aligned_cols=166 Identities=12% Similarity=0.148 Sum_probs=84.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE---ECC Q ss_conf 938985896886999999998798299942100000785200164475879998484679-9988620013630---004 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI---FAI 76 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~---~~v 76 (232) |||||+.|.+ +...+.|++.|+++...+... .+.....+.++|+++..+...+ +.+..... ..++ ... T Consensus 4 mKILi~~~i~--~~~~~~L~~~~~~v~~~~~~~-----~e~l~~~l~dad~li~~~~~~i~~~~l~~~p-~LK~I~~~~a 75 (307) T 1wwk_A 4 MKVLVAAPLH--EKAIQVLKDAGLEVIYEEYPD-----EDRLVELVKDVEAIIVRSKPKVTRRVIESAP-KLKVIARAGV 75 (307) T ss_dssp CEEEECSCCC--HHHHHHHHHTTCEEEECSSCC-----HHHHHHHSTTCSEEEESSCSCBCHHHHTTCT-TCCEEEESSS T ss_pred CEEEEECCCC--HHHHHHHHHCCCEEEECCCCC-----HHHHHHHHCCCCEEEEECCCCCCHHHHHCCC-CCEEEEECCC T ss_conf 8899968999--999999986799899789999-----9999998589949999389987999994299-9879998885 Q ss_pred CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH-----------------HH--------HHCCCCCCEEEEECCCCCCC Q ss_conf 158--9999764101223544454567899986-----------------42--------20127775389721567562 Q gi|255764510|r 77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIV-----------------EQ--------KVLFTPQKPLIYLGGKPRNF 129 (232) Q Consensus 77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~--------~~~~~~~~~vl~~~g~~~~~ 129 (232) |-. -...+.+.+......+...+...++... .. ......++++.++....... T Consensus 76 G~d~id~~~~~~~~I~v~n~~g~~~~~VAE~~l~~iL~~~R~~~~~~~~~~~~~~~~~~~~~~~l~~~~vgIiG~G~IG~ 155 (307) T 1wwk_A 76 GLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGY 155 (307) T ss_dssp CCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHH T ss_pred CCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEECCCCEEEEECCCHHHH T ss_conf 26751789897339467458985589999999999999985233678999839865457774404698999979288899 Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHHH Q ss_conf 0146898469825676887504689998-------89998623783899807899 Q gi|255764510|r 130 HFEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARSS 177 (232) Q Consensus 130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~~ 177 (232) .+.+.|+..|..| ..|...+.+... ..+.+++.+.|+|++.-|.+ T Consensus 156 ~va~~l~~fg~~v---~~~~~~~~~~~~~~~~~~~~~l~~ll~~sDiv~l~lplt 207 (307) T 1wwk_A 156 QVAKIANALGMNI---LLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLV 207 (307) T ss_dssp HHHHHHHHTTCEE---EEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCS T ss_pred HHHHHHHHCCCEE---EEECCCCCHHHHHHCCCEECCHHHHHHHCCEEEECCCCC T ss_conf 9999998779989---998799976667642944678999997599999978998 No 14 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Probab=96.11 E-value=0.029 Score=31.60 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=84.1 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE--CCC Q ss_conf 938985896886999999998798299942100000785200164475879998484679-99886200136300--041 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF--AIG 77 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~--~vg 77 (232) ||||++.+.+ +.-.+.|++.|++.+...--. ++.+.....+.++|++++.|..-+ +.+.....+-.-+. .+| T Consensus 5 mKIli~~~i~--~~~~~~L~~~g~~~v~~~~~~---~~~eel~~~i~d~d~iivrs~~~v~~~~l~~~~~Lk~I~~~g~G 79 (404) T 1sc6_A 5 IKFLLVEGVH--QKALESLRAAGYTNIEFHKGA---LDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIG 79 (404) T ss_dssp CCEEECSCCC--HHHHHHHHHTTCCCEEECSSC---CCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSC T ss_pred CEEEECCCCC--HHHHHHHHHCCCEEEEECCCC---CCHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCC T ss_conf 8899918999--999999997899899968999---99999998708976999878998599999508987499994753 Q ss_pred HH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H------HCCCCCCEEEEECCCCCCCC Q ss_conf 58--999976410122354445456789998642-------------------2------01277753897215675620 Q gi|255764510|r 78 EA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K------VLFTPQKPLIYLGGKPRNFH 130 (232) Q Consensus 78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~------~~~~~~~~vl~~~g~~~~~~ 130 (232) -. --.++.+.|......+...+...++...-. + .....++.+.+......... T Consensus 80 ~d~Id~~~a~~~GI~V~n~pg~n~~aVaE~~l~l~l~~~R~~~~~~~~~~~~~w~~~~~~~~el~gktlgIiG~G~IG~~ 159 (404) T 1sc6_A 80 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQ 159 (404) T ss_dssp CTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHH T ss_pred CCCHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHH T ss_conf 36410030103320146315754441167887754211001355555654276322356554443036899503331033 Q ss_pred HHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHH Q ss_conf 1468984698256768875046899--9889998623783899807899 Q gi|255764510|r 131 FEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 131 l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~ 177 (232) +.+.+...|..|..+..|....... ....+.+++...|.|++.-|.+ T Consensus 160 va~~~~~~gm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt 208 (404) T 1sc6_A 160 LGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404) T ss_dssp HHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS T ss_pred HHHHCCCCCCEEEECCCCCCCCCCCCEECCHHHHHHHHCCEEEECCCCC T ss_conf 3310034573686324446531135311030555452287999727888 No 15 >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Probab=95.95 E-value=0.01 Score=34.31 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=83.7 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCE-ECCCHH Q ss_conf 9389858968869999999987982999421000007852001644758799984846799988620013630-004158 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI-FAIGEA 79 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~-~~vg~~ 79 (232) |||+++...+...+ .+++.| ++...|-- +.....+.++|.++..|..-+..-.....+ .++ ...+.+ T Consensus 4 MKIl~d~~ip~~~e---~~~~~~-ev~~~~~~-------~~~~e~l~daD~livrs~~~i~~~ll~~~~-Lk~I~~~~~G 71 (381) T 3oet_A 4 MKILVDENMPYARE---LFSRLG-EVKAVPGR-------PIPVEELNHADALMVRSVTKVNESLLSGTP-INFVGTATAG 71 (381) T ss_dssp CEEEEETTSTTHHH---HHTTSS-EEEEECC----------CHHHHTTCSEEEECTTSCBSHHHHTTSC-CCEEEESSSC T ss_pred EEEEECCCCCHHHH---HHHHCC-CEEEECCC-------CCCHHHHCCCCEEEECCCCCCCHHHHCCCC-CEEEEECCCC T ss_conf 09998689845999---986489-88981899-------789988389829998999888799975899-8499989802 Q ss_pred H----HHHHHHHCCCCCCCCCCCHHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEE Q ss_conf 9----999764101223544454567899986-------42201277753897215675620146898469825676887 Q gi|255764510|r 80 S----ACLARQKGFTQIFHGKDNSINLAKIIV-------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCY 148 (232) Q Consensus 80 t----~~~~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY 148 (232) + ..++.+.|......+...+...++... ........++++.++........+.+.|+..|..|..+.-| T Consensus 72 ~D~iD~~~~~~~gI~v~n~~g~~a~aVAe~~l~~~l~~~~~~~~~~~~ktvGIiG~G~IG~~va~~l~~~g~~V~~~d~~ 151 (381) T 3oet_A 72 TDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPP 151 (381) T ss_dssp CTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHH T ss_pred CCCCCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 45007888960943899567646899999999987899874135541868844376757899999875478579998663 Q ss_pred EECCC-CCCHHHHHHHHCCCCEEEEECH Q ss_conf 50468-9998899986237838998078 Q gi|255764510|r 149 YSQDI-AYPETTMKNLLQNADAILFYAR 175 (232) Q Consensus 149 ~~~~~-~~~~~~~~~~~~~~d~i~f~S~ 175 (232) ..... ......+.+++.+.|.|.+--| T Consensus 152 ~~~~~~~~~~~~l~~ll~~sDiislh~p 179 (381) T 3oet_A 152 RAARGDEGDFRTLDELVQEADVLTFHTP 179 (381) T ss_dssp HHHTTCCSCBCCHHHHHHHCSEEEECCC T ss_pred CCCCCCCCCCCCHHHHHHHCCCEEEECC T ss_conf 2334433445779999974783145326 No 16 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} Probab=95.71 E-value=0.031 Score=31.37 Aligned_cols=166 Identities=13% Similarity=0.024 Sum_probs=89.0 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCC--CEECCC Q ss_conf 938985896886999999998798299942100000785200164475879998484679-99886200136--300041 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHT--PIFAIG 77 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~--~~~~vg 77 (232) ||||||.+.. ....+.|++.|++++..|-+. .+.....+.++|+++..+..-+ +-+.....+-. -.+.+| T Consensus 27 ~kvLi~~~~~--~~~~~~L~~~g~ev~~~~~~~-----~eel~~~~~d~d~li~~~~~~i~~~vl~~~~~LK~I~~~g~G 99 (335) T 2g76_A 27 RKVLISDSLD--PCCRKILQDGGLQVVEKQNLS-----KEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTG 99 (335) T ss_dssp CEEEECSCCC--HHHHHHHHHHTCEEEECCSCC-----HHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSS T ss_pred CEEEEECCCC--HHHHHHHHHCCCEEEECCCCC-----HHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCC T ss_conf 7699917999--899999997898999799989-----999999838984999868988799999319997699966854 Q ss_pred HH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------------HHCCCCCCEEEEECCCCCCCC Q ss_conf 58--999976410122354445456789998642-------------------------201277753897215675620 Q gi|255764510|r 78 EA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------------KVLFTPQKPLIYLGGKPRNFH 130 (232) Q Consensus 78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------------~~~~~~~~~vl~~~g~~~~~~ 130 (232) -. -..++.+.+......+...+...++...-. ......++++.++.-...... T Consensus 100 ~D~iD~~~a~~~gI~v~n~p~~~~~~VAE~~i~~iL~l~R~i~~~~~~~~~g~w~~~~~~g~eL~gktvgIiG~G~IG~~ 179 (335) T 2g76_A 100 VDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGRE 179 (335) T ss_dssp CTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHH T ss_pred CCCCCHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHH T ss_conf 56266999986790574279876314799999999999616799999998098765676762356888999898789999 Q ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHH Q ss_conf 146898469825676887504689998-------8999862378389980789 Q gi|255764510|r 131 FEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARS 176 (232) Q Consensus 131 l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~ 176 (232) +.+.++..|..|. .|.....+... ..+.+++.+.|+|++.-|. T Consensus 180 va~~l~~fg~~v~---~yd~~~~~~~~~~~~~~~~~l~~ll~~sDivslh~pl 229 (335) T 2g76_A 180 VATRMQSFGMKTI---GYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPL 229 (335) T ss_dssp HHHHHHTTTCEEE---EECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCC T ss_pred HHHHHCCCCCEEE---CCCCCCCHHHHHHHCCCHHHHHHHHHHCCEEEECCCC T ss_conf 9998566898786---6788755034555332043487765318999970688 No 17 >3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} Probab=95.71 E-value=0.085 Score=28.77 Aligned_cols=177 Identities=10% Similarity=0.099 Sum_probs=91.1 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCC Q ss_conf 99999998798299942100000785200164475879998484679998862001363000415899997641012235 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIF 93 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~ 93 (232) .+...+.+.|++++..+.-+-...........-...|++|+.+...-.-....+....|+.+++.... ......+. T Consensus 32 ~i~~~a~~~g~~v~l~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~iPvV~~~~~~~----~~~~~~V~ 107 (289) T 3k9c_A 32 QIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDTDELGALADRVPALVVARASG----LPGVGAVR 107 (289) T ss_dssp HHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCHHHHHHHHTTSCEEEESSCCS----STTSEEEE T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCC----CCCCCEEE T ss_conf 99999998599899993899889999999999729988999505699699999995799899960578----99888785 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHC-- Q ss_conf 44454567899986422012777538972156756------2014689846982567688750468999889998623-- Q gi|255764510|r 94 HGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN------FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQ-- 165 (232) Q Consensus 94 ~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~-- 165 (232) . +.......+.+... ..+.+++.++.+.+.. .-+.+.+.+.|..+....++...........+..+++ T Consensus 108 ~---D~~~a~~~a~~~l~-~~G~~~i~~i~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (289) T 3k9c_A 108 G---DDVAGITLAVDHLT-ELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMP 183 (289) T ss_dssp E---CHHHHHHHHHHHHH-HTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSS T ss_pred C---CHHHHHHHHHHHHH-HHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHC T ss_conf 4---76999999999998-7188741442587663157788877789998199977221115565677999999999734 Q ss_pred -CCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC Q ss_conf -7838998078999999971354405----80399718 Q gi|255764510|r 166 -NADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS 198 (232) Q Consensus 166 -~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig 198 (232) .+++++.++...+..+.+.+...+. ++.+++++ T Consensus 184 ~~~~ai~~~~d~~A~g~~~~l~~~g~~ip~dv~vi~~d 221 (289) T 3k9c_A 184 TPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289) T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 58660121458999999999998599999754420248 No 18 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Probab=95.44 E-value=0.029 Score=31.54 Aligned_cols=164 Identities=14% Similarity=0.028 Sum_probs=86.6 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCE---ECC Q ss_conf 9389858968869999999987982999421000007852001644758799984846799-988620013630---004 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPI---FAI 76 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~---~~v 76 (232) ||||+....+...+ .+.+.| ++..+|--++ ....+.++|.++..|..-+. .+.... + .++ ..+ T Consensus 1 MKIl~d~nip~~~~---~f~~~~-~v~~~~~~~~-------~~~~l~daD~livrs~t~v~~~ll~~~-~-Lk~I~~~~~ 67 (380) T 2o4c_A 1 MRILADENIPVVDA---FFADQG-SIRRLPGRAI-------DRAALAEVDVLLVRSVTEVSRAALAGS-P-VRFVGTCTI 67 (380) T ss_dssp CEEEEETTCTTHHH---HHGGGS-EEEEECGGGC-------STTTTTTCSEEEECTTSCBCHHHHTTS-C-CCEEEECSS T ss_pred CEEEECCCCHHHHH---HHHCCC-EEEECCCCCC-------CHHHHCCCEEEEECCCCCCCHHHHCCC-C-CEEEEECCC T ss_conf 97998789868999---860189-6998489868-------988838966999778988899997589-9-859988872 Q ss_pred CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE Q ss_conf 158--9999764101223544454567899986-------4220127775389721567562014689846982567688 Q gi|255764510|r 77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIV-------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC 147 (232) Q Consensus 77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v 147 (232) |-. -..++.+.|......+...+...++... +.......++++.++........+.+.|+..|..|..+.. T Consensus 68 G~D~ID~~~~~~~gI~v~n~pg~na~aVAE~vl~~~l~~~r~~~~~l~~~tvGIvG~G~IG~~va~~l~~~g~~v~~~d~ 147 (380) T 2o4c_A 68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP 147 (380) T ss_dssp CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECH T ss_pred CCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC T ss_conf 22403899998789579957986808999999983335666523053077883879881399999999864962102477 Q ss_pred EEECCCC-CCHHHHHHHHCCCCEEEEECHHH Q ss_conf 7504689-99889998623783899807899 Q gi|255764510|r 148 YYSQDIA-YPETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 148 Y~~~~~~-~~~~~~~~~~~~~d~i~f~S~~~ 177 (232) |...... .....+.+.+...|+|++.-|.+ T Consensus 148 ~~~~~~~~~~~~~l~e~l~~~Divslh~plt 178 (380) T 2o4c_A 148 PRQAREPDGEFVSLERLLAEADVISLHTPLN 178 (380) T ss_dssp HHHHHSTTSCCCCHHHHHHHCSEEEECCCCC T ss_pred CCCCCCCCCCCCCHHHHHHCCCEEEEECCCC T ss_conf 4222344232256888640078899956688 No 19 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Probab=94.92 E-value=0.072 Score=29.19 Aligned_cols=173 Identities=9% Similarity=-0.036 Sum_probs=81.4 Q ss_pred CEEEEECCHHHHHHHHHHHHHCC-CCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE---EC Q ss_conf 93898589688699999999879-8299942100000785200164475879998484679-9988620013630---00 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMG-YIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI---FA 75 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G-~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~---~~ 75 (232) |||+||++.++. ....|++.+ +++...+ .-.+.+.+.......++|+|+..+..-+ +.+........++ .. T Consensus 9 mKIli~~~i~~~--~~~~L~~~~~~~v~~~~--~~~~~~~~el~~~~~~ad~li~~~~~~i~~~~l~~~~~~LK~I~~~~ 84 (330) T 2gcg_A 9 MKVFVTRRIPAE--GRVALARAADCEVEQWD--SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMS 84 (330) T ss_dssp EEEEESSCCCHH--HHHHHHHCTTEEEEECC--SSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESS T ss_pred CEEEEECCCCHH--HHHHHHHCCCCEEEECC--CCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCEEEEECC T ss_conf 189996888999--99999852994899778--99999999999871898599985899859999970089954998998 Q ss_pred CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----------------------------HCCCCCCEEEEECCC Q ss_conf 4158--9999764101223544454567899986422----------------------------012777538972156 Q gi|255764510|r 76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQK----------------------------VLFTPQKPLIYLGGK 125 (232) Q Consensus 76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----------------------------~~~~~~~~vl~~~g~ 125 (232) +|-. -..++.+.+......+...+...++...-.. .....++.+.+.... T Consensus 85 aG~d~id~~~~~~~gi~v~~~~~~~~~~vae~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gi~g~g 164 (330) T 2gcg_A 85 VGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLG 164 (330) T ss_dssp SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCS T ss_pred CCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECC T ss_conf 54360179999867988997898423889999999998876323899999972996423432446742121059998013 Q ss_pred CCCCCHHHHHHHCCCEEEEEEEEEECCCC-----CCHHHHHHHHCCCCEEEEECHHH Q ss_conf 75620146898469825676887504689-----99889998623783899807899 Q gi|255764510|r 126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-----YPETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-----~~~~~~~~~~~~~d~i~f~S~~~ 177 (232) .....+...+...+..+.....+...... .....+.+++...|+|+..-|.+ T Consensus 165 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sDivv~~lplt 221 (330) T 2gcg_A 165 RIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLT 221 (330) T ss_dssp HHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCC T ss_pred CHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCEEEECCCCC T ss_conf 011345532023464035541146844554432000020466613577899714688 No 20 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Probab=94.59 E-value=0.2 Score=26.51 Aligned_cols=170 Identities=13% Similarity=0.036 Sum_probs=85.7 Q ss_pred CEEEEECCHHHHHH-HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-----HHHHHHHHHCCCCCEE Q ss_conf 93898589688699-99999987982999421000007852001644758799984846-----7999886200136300 Q gi|255764510|r 1 MYIVITRPIKKALR-TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-----SLSTLPANFCRHTPIF 74 (232) Q Consensus 1 M~ilitRp~~~a~~-~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-----av~~~~~~~~~~~~~~ 74 (232) |||++.-..+.... +....++.|+++...| .+++.+.......++|+++..+.. -.+.+.....+-.-.. T Consensus 1 MKIl~~~~~~~~~~~~e~~~~~~~~ev~~~~----~~~~~~e~~~~~~~~D~~i~~~~~~~~~~~l~~~~~l~lK~I~~~ 76 (331) T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVP----DYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTR 76 (331) T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECS----CCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEES T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEC T ss_conf 9899981585567999997656495899917----999989999986799789990788779999974520597099988 Q ss_pred CCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H-------HCCCCCCEEEEECCCC Q ss_conf 04158--999976410122354445456789998642-------------------2-------0127775389721567 Q gi|255764510|r 75 AIGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K-------VLFTPQKPLIYLGGKP 126 (232) Q Consensus 75 ~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~-------~~~~~~~~vl~~~g~~ 126 (232) .+|-. -..++.+.|......+...+...+|...-. + .....++.+.+..... T Consensus 77 ~aG~D~iD~~~~~~~gI~v~n~~g~~~~~VAE~~l~~iL~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vgi~G~G~ 156 (331) T 1xdw_A 77 TAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGR 156 (331) T ss_dssp SSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSH T ss_pred CCCCCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEEECCCC T ss_conf 83665007998973988999799988167999999999999877677655543135433355454143142999986676 Q ss_pred CCCCHHHHHHHCCCEEEEEEEEEECCCCCC-----HHHHHHHHCCCCEEEEECHHH Q ss_conf 562014689846982567688750468999-----889998623783899807899 Q gi|255764510|r 127 RNFHFEDYLIEHKIPLRVIDCYYSQDIAYP-----ETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~-----~~~~~~~~~~~d~i~f~S~~~ 177 (232) ....+.+.|...|..+.. |.....+.. ...+.+++...|+|++.-|.+ T Consensus 157 ig~~~a~~l~~~~~~v~~---~~~~~~~~~~~~~~~~~l~~ll~~sDiv~~~~plt 209 (331) T 1xdw_A 157 IGRVAAQIFHGMGATVIG---EDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYI 209 (331) T ss_dssp HHHHHHHHHHHTTCEEEE---ECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCC T ss_pred CCHHHHHHHHCCCCEEEC---CCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCC T ss_conf 443789876446834630---44433334433013235777543315554346887 No 21 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Probab=94.58 E-value=0.14 Score=27.49 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=86.8 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH--HHHHHHHCCCCC---EEC Q ss_conf 938985896886999999998798299942100000785200164475879998484679--998862001363---000 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL--STLPANFCRHTP---IFA 75 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av--~~~~~~~~~~~~---~~~ 75 (232) .|||||+|.++. ..++|++. ++++..+.-. +.+.+.....+.++|+++.++..-+ +.+.. .....+ .+. T Consensus 2 ~KIlit~~lp~~--~l~~L~~~-~ev~~~~~~~--~~~~~el~~~~~~~d~ii~~~~~~~~~e~l~~-~~~~LK~I~~~~ 75 (320) T 1gdh_A 2 KKILITWPLPEA--AMARARES-YDVIAHGDDP--KITIDEMIETAKSVDALLITLNEKCRKEVIDR-IPENIKCISTYS 75 (320) T ss_dssp CEEEESSCCCHH--HHHHHHTT-SEEEECCSTT--CCCHHHHHHHHTTCSEEEEETTSCBCHHHHHH-SCTTCCEEEEES T ss_pred CEEEECCCCCHH--HHHHHHCC-CCEEEECCCC--CCCHHHHHHHHCCCCEEEECCCCCCCHHHHHH-CCCCCCEEEECC T ss_conf 789991789999--99998768-9499958999--99999999985898399987899979999971-668872899998 Q ss_pred CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H---------HCCCCCCEEEEECCC Q ss_conf 4158--999976410122354445456789998642-------------------2---------012777538972156 Q gi|255764510|r 76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K---------VLFTPQKPLIYLGGK 125 (232) Q Consensus 76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~---------~~~~~~~~vl~~~g~ 125 (232) +|-. -..++.+.+......+...+...++...-. + .....++++.++... T Consensus 76 ~G~D~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~~~~~~~~~~~~~g~~l~gk~vgIiG~G 155 (320) T 1gdh_A 76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG 155 (320) T ss_dssp SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS T ss_pred EECCHHCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEEEC T ss_conf 74451269999977999997899671999999999999975234666554432124655433425426259889998166 Q ss_pred CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH---------HHHHHHHCCCCEEEEECHHH Q ss_conf 75620146898469825676887504689998---------89998623783899807899 Q gi|255764510|r 126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE---------TTMKNLLQNADAILFYARSS 177 (232) Q Consensus 126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~i~f~S~~~ 177 (232) .....+.+.|+..|..| ..|.+...+... ..+.+++...|+|++.-|.+ T Consensus 156 ~IG~~va~~l~~fg~~V---~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~D~v~~~~plt 213 (320) T 1gdh_A 156 SIGQALAKRAQGFDMDI---DYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPST 213 (320) T ss_dssp HHHHHHHHHHHTTTCEE---EEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCC T ss_pred HHHHHHHHHHHHCCCEE---EEECCCCCCHHHHHHCCCEECCCHHHHHHCCCEEEECCCCC T ss_conf 69999999987428768---88668777545553126332377999962399899868998 No 22 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Probab=94.54 E-value=0.12 Score=27.76 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=86.7 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEE-CCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCH Q ss_conf 93898589688699999999879829994-2100000785200164475879998484679-998862001363000415 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMM-PLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGE 78 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~-Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~ 78 (232) ||||++.+.. ..-.+.|++.|++.+.. |- +++.+.....+.++|++++.|..-+ +-+.....+-.-+...|. T Consensus 16 ~KIL~~~~i~--~~~~~~l~~~g~~~v~~~~~----~~~~eel~~~i~~~d~iivrs~~~v~~~~l~~~~~Lk~I~~~ga 89 (416) T 3k5p_A 16 INVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----ALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSV 89 (416) T ss_dssp SCEEECSCCC--HHHHHHHHHTTCCCEEECSS----CCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECSS T ss_pred CEEEEECCCC--HHHHHHHHHCCCEEEEECCC----CCCHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCEEEECCE T ss_conf 8799938999--99999999789989997999----99999999872798199988899879999933999729998986 Q ss_pred H----HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------------HHCCCCCCEEEEECCCCCCC Q ss_conf 8----999976410122354445456789998642-------------------------20127775389721567562 Q gi|255764510|r 79 A----SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------------KVLFTPQKPLIYLGGKPRNF 129 (232) Q Consensus 79 ~----t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------------~~~~~~~~~vl~~~g~~~~~ 129 (232) + -..++.+.|......+...+...++...-. ......++.+.++....... T Consensus 90 G~d~Id~~~~~~~gI~V~n~pg~na~aVAE~~i~~iL~l~R~i~~~~~~~~~~~w~~~~~~~~~l~~k~~giiG~G~iG~ 169 (416) T 3k5p_A 90 GTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGS 169 (416) T ss_dssp CCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHH T ss_pred ECCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEEEEECCCCCC T ss_conf 21300699899789799976986622899999999886531025665454317711036676240460899981266421 Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHHHH Q ss_conf 01468984698256768875046899--988999862378389980789999 Q gi|255764510|r 130 HFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSSVL 179 (232) Q Consensus 130 ~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~ 179 (232) .....+...|..+..+..|....... ....+.+++.+.|+|++.-|.+-+ T Consensus 170 ~va~~~~~~g~~v~~~~~~~~~~~~~~~~~~~L~ell~~sDiIslh~Plt~~ 221 (416) T 3k5p_A 170 QVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKS 221 (416) T ss_dssp HHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC--- T ss_pred EEEEECCCCCCEEEEECCCCCCHHCCEEECCCHHHHHHHCCEEEECCCCCCC T ss_conf 1123101355157763165440102312148999997528888871453002 No 23 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Probab=93.12 E-value=0.38 Score=24.87 Aligned_cols=168 Identities=14% Similarity=0.060 Sum_probs=81.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE---CC Q ss_conf 938985896886999999998798299942100000785200164475879998484679-99886200136300---04 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF---AI 76 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~---~v 76 (232) +|||||++.++ ...+.|++. +++...+.-. ..+.+.....+.++|+++..+..-+ +-+..... ..++. .. T Consensus 3 pKILvt~~l~~--~~l~~L~~~-~ev~v~~~~~--~~~~e~l~~~l~~~dali~~~~~~i~~e~l~~~p-~LK~I~~~~~ 76 (334) T 2dbq_A 3 PKVFITREIPE--VGIKMLEDE-FEVEVWGDEK--EIPREILLKKVKEVDALVTMLSERIDKEVFENAP-KLRIVANYAV 76 (334) T ss_dssp CEEEESSCCCH--HHHHHHHTT-SEEEECCCSS--CCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCT-TCCEEEESSS T ss_pred CEEEEECCCCH--HHHHHHHCC-CCEEEECCCC--CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHCCC-CCCEEEECCC T ss_conf 78999598999--999998668-9299937998--8999999998489839998789998999994499-9839998886 Q ss_pred CH--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------H------------HCCCCCCEEEEE Q ss_conf 15--8999976410122354445456789998642--------------------2------------012777538972 Q gi|255764510|r 77 GE--ASACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------K------------VLFTPQKPLIYL 122 (232) Q Consensus 77 g~--~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------~------------~~~~~~~~vl~~ 122 (232) |- --..++.+.+......+...+...+|..... . .....++++.++ T Consensus 77 G~d~id~~~~~~~~I~v~n~~g~~~~~VAE~~l~~iL~l~R~l~~~~~~~~~g~w~~~~~~~~~~~~~g~~L~g~~vgii 156 (334) T 2dbq_A 77 GYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII 156 (334) T ss_dssp CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEE T ss_pred CCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 44500689998669653328987740448999999999865546889999808753355556754445510579989998 Q ss_pred CCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHHH Q ss_conf 15675620146898469825676887504689998-------89998623783899807899 Q gi|255764510|r 123 GGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARSS 177 (232) Q Consensus 123 ~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~~ 177 (232) .-......+.+.|+..|..| .+|.....+... ..+.+++.+.|+|++.-|.+ T Consensus 157 G~G~IG~~va~~l~~fg~~v---~~~~~~~~~~~~~~~~~~~~~l~ell~~sDii~~~~plt 215 (334) T 2dbq_A 157 GLGRIGQAIAKRAKGFNMRI---LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLT 215 (334) T ss_dssp CCSHHHHHHHHHHHHTTCEE---EEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCC T ss_pred EECHHHHHHHHHHHCCCCEE---EEECCCCCHHHHHHCCCEECCHHHHHHHCCEEEECCCCC T ss_conf 17889999999976078789---973688733347652944578999986699999928997 No 24 >3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} Probab=92.66 E-value=0.44 Score=24.46 Aligned_cols=180 Identities=13% Similarity=0.070 Sum_probs=93.3 Q ss_pred HHHHHHHHHCCCCEEEECCEEEEC-CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 999999998798299942100000-7852001644758799984846799988620013630004158999976410122 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIH-DRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~-~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) ..+.+.++++|++++.++.-.-.. .........-...|++|+.+...-...........|+..++... ....... T Consensus 28 ~gi~~~~~~~g~~l~v~~~~~~~~~e~~~~~~~~~~~vdgii~~~~~~~~~~~~~~~~~~p~V~~~~~~----~~~~~~~ 103 (285) T 3c3k_A 28 KGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNIIGAFPWVQCAEYD----PLSTVSS 103 (285) T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHHTTSSEEEESSCC----TTSSSCE T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCEEEECCCC----CCCCCCE T ss_conf 999999998599899997899989999999998607732584146310489999986259889840457----8899998 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH Q ss_conf 354445456789998642201277753897215675620-------1468984698256768875046899988999862 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL 164 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~ 164 (232) + ..+.......+.+.... .+.+++.++.|...... +.+.+.+.|..+....++.......-......++ T Consensus 104 V---~~D~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (285) T 3c3k_A 104 V---SIDDVAASEYVVDQLVK-SGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLL 179 (285) T ss_dssp E---ECCHHHHHHHHHHHHHH-TTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHH T ss_pred E---EECHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 9---96718889999999997-3995699982445664045767999999998599843121222114555789999887 Q ss_pred ---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf ---37838998078999999971354405----8039971889 Q gi|255764510|r 165 ---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 165 ---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) .++++++.++...+..+.+.+...+. ++.+++++.. T Consensus 180 ~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vig~d~~ 222 (285) T 3c3k_A 180 KSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDGV 222 (285) T ss_dssp SSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC T ss_pred HCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCH T ss_conf 4179975377457799999999999849977843899823872 No 25 >1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Probab=90.20 E-value=0.36 Score=24.98 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=35.6 Q ss_pred CEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 9389858--96886999999998798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) ||||+.+ +.++...+.+.|++.|+++-..-.-+..+++ .++.+||++|++-. T Consensus 13 ~rilviqh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p-----~~~~~~D~lii~GG 66 (239) T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLE-----RPLEEYSLVVLLGG 66 (239) T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCS-----SCGGGCSEEEECCC T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC-----CCHHHCCEEEECCC T ss_conf 0899997988889779999999789969999888987787-----66322898998899 No 26 >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Probab=86.87 E-value=0.71 Score=23.22 Aligned_cols=51 Identities=6% Similarity=-0.050 Sum_probs=35.1 Q ss_pred CE-EEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC Q ss_conf 93-89858--9688699999999879829994210000078520016447587999848 Q gi|255764510|r 1 MY-IVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~-ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232) || |||.+ +.+....+.+.|++.|++.....+..-.+++ .++.+||++|++- T Consensus 3 mk~vlv~qh~~~e~~g~~~~~l~~~g~~~~v~~~~~~~~~P-----~~~~~~dglii~G 56 (250) T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLP-----AEIRDCSGLAMMG 56 (250) T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCC-----SCGGGSSEEEECC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC-----CCHHHCCEEEECC T ss_conf 86499995799998139999998589979999789998787-----7763389899909 No 27 >2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A* Probab=86.81 E-value=0.35 Score=25.05 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=80.9 Q ss_pred CEEEEEC-CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE---EC Q ss_conf 9389858-96886999999998798299942100000785200164475879998484679-9988620013630---00 Q gi|255764510|r 1 MYIVITR-PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI---FA 75 (232) Q Consensus 1 M~ilitR-p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~---~~ 75 (232) |+||+|- |..+-..+.+.|...+.+....+ ....+ ...+.++|.|+.-+..-+ +-+..... ..++ .. T Consensus 1 M~vl~~~~p~~~~~~~~e~l~~~~~~~~~~~---~~~~~----~~~~~~ad~i~~~~~~~~~~~~l~~~p-~Lk~I~~~~ 72 (334) T 2pi1_A 1 MNVLFTSVPQEDVPFYQEALKDLSLKIYTTD---VSKVP----ENELKKAELISVFVYDKLTEELLSKMP-RLKLIHTRS 72 (334) T ss_dssp CEEEECSCCTTHHHHHHHHTTTSEEEECSSC---GGGSC----HHHHHHCSEEEECTTSCBCHHHHTTCT-TCCEEEESS T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCEEEECC---CCCCC----HHHHCCCCEEEEECCCCCCHHHHHCCC-CCCEEEECC T ss_conf 9799968872447689998864692799577---46388----878457879999588988999994599-870898888 Q ss_pred CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------------HHCCCCCCEEEEECCCCC Q ss_conf 4158--999976410122354445456789998642--------------------------201277753897215675 Q gi|255764510|r 76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------------KVLFTPQKPLIYLGGKPR 127 (232) Q Consensus 76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------------~~~~~~~~~vl~~~g~~~ 127 (232) .|-. -..++.+.|......+...+...++...-. ......++++.++..... T Consensus 73 aG~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~l~~il~~~r~l~~~~~~~~~~~~~~~~~~~~~~l~g~~vgIiG~G~I 152 (334) T 2pi1_A 73 VGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRI 152 (334) T ss_dssp SCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBCCGGGSEEEEECCSHH T ss_pred CCCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCHH T ss_conf 50575486588739918995798580899999999988875233100221123553222343442105868999868989 Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCC------CHHHHHHHHCCCCEEEEECHH Q ss_conf 6201468984698256768875046899------988999862378389980789 Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAY------PETTMKNLLQNADAILFYARS 176 (232) Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~------~~~~~~~~~~~~d~i~f~S~~ 176 (232) ...+.+.|+..|..+. .|.....+. ....+.+++.+.|+|+..-|. T Consensus 153 G~~~a~~l~~~g~~v~---~~~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~lPl 204 (334) T 2pi1_A 153 GSRVAMYGLAFGMKVL---CYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPY 204 (334) T ss_dssp HHHHHHHHHHTTCEEE---EECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCC T ss_pred HHHHHHHHHHCCCEEE---EECCCCCHHHHHCCCEECCHHHHHHHCCEEEECCCC T ss_conf 9999998774585799---987865112453382544899998548978984789 No 28 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Probab=86.75 E-value=1.4 Score=21.52 Aligned_cols=171 Identities=9% Similarity=0.001 Sum_probs=83.0 Q ss_pred CEEEEECCHHHHH-HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH--HHHHHHHHCCCCCE---E Q ss_conf 9389858968869-9999999879829994210000078520016447587999848467--99988620013630---0 Q gi|255764510|r 1 MYIVITRPIKKAL-RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES--LSTLPANFCRHTPI---F 74 (232) Q Consensus 1 M~ilitRp~~~a~-~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a--v~~~~~~~~~~~~~---~ 74 (232) |||+++-..++.. .+.+.+++.|.++...+-.. . +.......++|.|+..+..- -+.+........++ . T Consensus 1 MKIl~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~d~d~ii~~~~~~~~~~~i~~~~~~nLK~I~~~ 75 (333) T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFL----D-ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR 75 (333) T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCC----C-TTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEES T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCC----C-HHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCEEEEEC T ss_conf 9799980686069999998887698899917999----8-8999985899789995489889999973732698799989 Q ss_pred CCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------------HHCCCCCCEEEEECCCC Q ss_conf 04158--999976410122354445456789998642--------------------------20127775389721567 Q gi|255764510|r 75 AIGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------------KVLFTPQKPLIYLGGKP 126 (232) Q Consensus 75 ~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------------~~~~~~~~~vl~~~g~~ 126 (232) .+|-. -..++.+.|......+...+...+|...-. ......++.+.+..+.. T Consensus 76 ~~G~D~ID~~~~~~~gI~v~n~~g~~a~aVAE~~l~~iL~l~R~~~~~~~~~~~g~~~~~~~~~~~~L~gk~vgI~G~G~ 155 (333) T 1dxy_A 76 NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH 155 (333) T ss_dssp SSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH T ss_pred CCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCC T ss_conf 82567459889962987999799848378999999999987540489999876165445566565114687788846776 Q ss_pred CCCCHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHH Q ss_conf 56201468984698256768875046899--988999862378389980789 Q gi|255764510|r 127 RNFHFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARS 176 (232) Q Consensus 127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~ 176 (232) +...+...+...|..|..+.-|....... ....+..++...|+|+..-|. T Consensus 156 iG~~~a~~~~~fg~~V~~~~~~~~~~~~~~~~~~~l~~l~~~~Dvv~~~~pl 207 (333) T 1dxy_A 156 IGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPG 207 (333) T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCC T ss_pred CCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHCCCCEEEEECCC T ss_conf 4647777760389879986054234533213442356563045546640687 No 29 >3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} Probab=85.25 E-value=1.6 Score=21.06 Aligned_cols=175 Identities=10% Similarity=0.147 Sum_probs=89.0 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 9999999987982999421000007-852001644758799984846799988620013630004158999976410122 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) ..+.+.+++.|++.+.++.-.-... ........-...|+||+.+...-..+......+.|+..++.... ...... T Consensus 27 ~gi~~~~~~~gy~~~i~~~~~~~~~~~~~i~~l~~~~vdgiIl~~~~~~~~~~~~~~~~iPvV~~~~~~~----~~~~~~ 102 (276) T 3jy6_A 27 KGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDREMD----ACPWPQ 102 (276) T ss_dssp HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCCCT----TCSSCE T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE T ss_conf 9999999986999999948999899999999999669989999536896999999974999999767778----889888 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-H---HHHHHHCCCEEEEEEEEEECCCCCCH----HHHHHH Q ss_conf 354445456789998642201277753897215675620-1---46898469825676887504689998----899986 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-F---EDYLIEHKIPLRVIDCYYSQDIAYPE----TTMKNL 163 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-l---~~~L~~~g~~v~~~~vY~~~~~~~~~----~~~~~~ 163 (232) +. .+.......+.+.... .+.+++.++.+...... . .+...+.........++ ...... ..+..+ T Consensus 103 V~---~d~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~ 175 (276) T 3jy6_A 103 VV---TDNFEAAKAATTAFRQ-QGYQHVVVLTSELELSRTRQERYRGILAAAQDVDVLEVS---ESSYNHSEVHQRLTQL 175 (276) T ss_dssp EE---CCHHHHHHHHHHHHHT-TTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEEEEEC---SSSCCHHHHHHHHHHH T ss_pred EE---ECHHHHHHHHHHHHHH-HCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHH T ss_conf 99---6479987777788987-356621387057311013878999999998755975321---3567678899999998 Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC Q ss_conf 2---37838998078999999971354405----80399718 Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS 198 (232) Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig 198 (232) + .++|+|+.+|...+..+.+.+...+. ++.++++. T Consensus 176 l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~di~vi~~d 217 (276) T 3jy6_A 176 ITQNDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFA 217 (276) T ss_dssp HHSSSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBC T ss_pred HHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC T ss_conf 764014330100667999999999998699999947999988 No 30 >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} Probab=85.15 E-value=1.7 Score=21.03 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=45.9 Q ss_pred CHHHHHHH-HCCCCEEEEECHHHHHHH--HHHCCHHH-CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC Q ss_conf 98899986-237838998078999999--97135440-580399718899999997699669987999988999998614 Q gi|255764510|r 156 PETTMKNL-LQNADAILFYARSSVLYF--FSLPLPAK-ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLR 231 (232) Q Consensus 156 ~~~~~~~~-~~~~d~i~f~S~~~v~~~--~~~~~~~~-~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~ 231 (232) ..+.+..+ +.+.++++.+++.-..+. ...+...+ ..+...+-.+..++.++..|...++.++.-..++|++.|.|. T Consensus 59 ~~~~L~~~~i~~a~~vi~~~~~d~~n~~~~~~~k~~~~~~ii~~~~~~~~~~~l~~~G~~~vv~~~~~~~~~i~~~l~~~ 138 (141) T 3llv_A 59 DESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMDKIKKM 138 (141) T ss_dssp CHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHHHHHHC T ss_pred CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHC T ss_conf 88888666672388999981880999999999985589988999869889999997798999978999999999997400 No 31 >3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Probab=84.56 E-value=1.8 Score=20.87 Aligned_cols=178 Identities=12% Similarity=0.074 Sum_probs=85.5 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC Q ss_conf 99999999879829994210000078520016447587999848467999886200136300041589999764101223 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232) ..+.+.+.+.|++.+.+..-+-+..............|++|+.+......+. ....++.+++..... ......+ T Consensus 25 ~gi~~~a~~~g~~l~v~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~p~vv~~~~~~~---~~~~~~V 98 (280) T 3gyb_A 25 QSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDIPDFTVP---DSLPPFVIAGTRITQ---ASTHDSV 98 (280) T ss_dssp HHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESCC-----------CCCEEEESCCCSS---SCSTTEE T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH---HCCCCEEEECCCCCC---CCCCCEE T ss_conf 9999999986998999968999899999999985698789960457307777---428978997366788---8889789 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-----CCHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH-- Q ss_conf 544454567899986422012777538972156756-----2014689846982567688750468999-88999862-- Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN-----FHFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNLL-- 164 (232) Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~-----~~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~~-- 164 (232) . .+......++.+.... .+..++.++.+.... .-+.+.+.+.|........+ ....... ......++ T Consensus 99 ~---~D~~~~~~~a~~~L~~-~G~~~i~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 173 (280) T 3gyb_A 99 A---NDDFRGAEIATKHLID-LGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYL-GPAVEHAGYTETLALLKE 173 (280) T ss_dssp E---ECHHHHHHHHHHHHHH-TTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCC-SCCCHHHHHHHHHHHHHH T ss_pred E---ECHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHC T ss_conf 9---7689999999999997-2984676301232178999888877899729974201013-445377889999999853 Q ss_pred -CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH Q ss_conf -37838998078999999971354405----80399718899 Q gi|255764510|r 165 -QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI 201 (232) Q Consensus 165 -~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t 201 (232) .++|+|+..+-..+..+.+.+...+. ++.+++++... T Consensus 174 ~~~~~ai~~~~d~~a~g~~~~l~~~g~~iP~dv~vvg~d~~~ 215 (280) T 3gyb_A 174 HPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNTP 215 (280) T ss_dssp CTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCH T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHH T ss_conf 899838995688999999999998799899876999989818 No 32 >3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Probab=83.62 E-value=1.9 Score=20.63 Aligned_cols=141 Identities=12% Similarity=0.003 Sum_probs=70.8 Q ss_pred CCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC Q ss_conf 587999--848467999886200136300041589999764101223544454567899986422012777538972156 Q gi|255764510|r 48 SYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK 125 (232) Q Consensus 48 ~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~ 125 (232) ..+.|+ ++|..+..........+.+.+..+...............+............+...... ...+++.++..+ T Consensus 71 ~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~k~v~ii~~d 149 (375) T 3i09_A 71 GLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVK-QGGKTWFFLTAD 149 (375) T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHH-TTCCEEEEEEES T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH-CCCCEEEEECCC T ss_conf 9769997256067788777787518630234212232346677873467504548999999988763-288689993588 Q ss_pred -----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHHHCCHHHC Q ss_conf -----75620146898469825676887504689998899986-2378389980-78999999971354405 Q gi|255764510|r 126 -----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFSLPLPAKI 190 (232) Q Consensus 126 -----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~~~~~~~~ 190 (232) ...+.+.+.+.+.|..+.....|..-. .+....+..+ ..++|+|++. ++.....|++.+...+. T Consensus 150 ~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~Df~~~v~~i~~~~~d~V~~~~~~~~~~~~~~~~~~~G~ 220 (375) T 3i09_A 150 YAFGKALEKNTADVVKANGGKVLGEVRHPLSA-SDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGI 220 (375) T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-SCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTG T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC T ss_conf 70666789999888873497489889605513-453248888762599899992667079999999997599 No 33 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Probab=83.54 E-value=1.6 Score=21.04 Aligned_cols=168 Identities=10% Similarity=0.092 Sum_probs=83.9 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCE--ECCC Q ss_conf 9389858968869999999987982999421000007852001644758799984846799-988620013630--0041 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPI--FAIG 77 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~--~~vg 77 (232) ++||++.|.. ..+.+.|++. ++++.+.-. +.+.+.......++|+|+..+...+. .+.....+-.-+ +.+| T Consensus 24 ~~VL~~~p~~--~~~~~~L~~~-~~v~~~~~~---~~~~~~l~~~~~~~daiv~~~~~~i~~e~l~~~p~LK~I~~~g~G 97 (333) T 3ba1_A 24 IGVLMMCPMS--TYLEQELDKR-FKLFRYWTQ---PAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG 97 (333) T ss_dssp CEEEECSCCC--HHHHHHHHHH-SEEEEGGGC---SSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSC T ss_pred CEEEEECCCC--HHHHHHHHCC-CCEEECCCC---CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCEEEECCCC T ss_conf 4289847999--7999998667-479971689---998899998756987999899999689999439976279889842 Q ss_pred HH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H-------HCCCCCCEEEEECCCCCCC Q ss_conf 58--999976410122354445456789998642-------------------2-------0127775389721567562 Q gi|255764510|r 78 EA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K-------VLFTPQKPLIYLGGKPRNF 129 (232) Q Consensus 78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~-------~~~~~~~~vl~~~g~~~~~ 129 (232) -. -..++.+.|......+...+...+|...-. + .....++++.++.-..... T Consensus 98 ~D~ID~~~~~~~gI~V~n~pg~~~~~VAE~al~liLal~R~~~~~~~~~~~~~~~~~~~~~~~~l~gk~vgIiG~G~IG~ 177 (333) T 3ba1_A 98 LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGL 177 (333) T ss_dssp CTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHH T ss_pred CCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEECCCEEEEECCCHHHH T ss_conf 25055888986897897089867899999999999987402245555542166453555455423599999988188999 Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCCCC----HHHHHHHHCCCCEEEEECHHH Q ss_conf 014689846982567688750468999----889998623783899807899 Q gi|255764510|r 130 HFEDYLIEHKIPLRVIDCYYSQDIAYP----ETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~----~~~~~~~~~~~d~i~f~S~~~ 177 (232) .+.+.+...|..|. .|........ ...+.+++.+.|+|++.-|.+ T Consensus 178 ~va~~~~~fg~~v~---~~~~~~~~~~~~~~~~~l~ell~~sDvi~l~~Plt 226 (333) T 3ba1_A 178 AVAERAEAFDCPIS---YFSRSKKPNTNYTYYGSVVELASNSDILVVACPLT 226 (333) T ss_dssp HHHHHHHTTTCCEE---EECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCC T ss_pred HHHHHHHCCCCEEE---EECCCCCHHHCCCCCCCHHHHHCCCCEEEEECCCC T ss_conf 99998743697798---64045662221343430333203399999918997 No 34 >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Probab=83.46 E-value=2 Score=20.59 Aligned_cols=175 Identities=13% Similarity=0.069 Sum_probs=88.6 Q ss_pred HHHHHHHHCCCCEEEECCEEE-ECCCCCCCCCCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 999999987982999421000-0078520016447587999848467999-88620013630004158999976410122 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYF-IHDRESVFLAMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i-~~~~~~~~~~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) .+...+++.|++...+..-.- ...............|++|+.+...-.. .........|+..++... ..... T Consensus 33 gi~~~~~~~g~~~~l~~~~~~~d~~~~~~~~~~~~~vdgiIv~~~~~~~~~~~~~~~~~iP~V~~~~~~------~~~~~ 106 (289) T 3g85_A 33 GLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYLNKASLTLPIILFNRLS------NKYSS 106 (289) T ss_dssp HHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHHHHHHCCCSSCEEEESCCC------SSSEE T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCC------CCCCE T ss_conf 999999986996799986897109999999998579788997787667899999854997289976688------99998 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHH Q ss_conf 354445456789998642201277753897215675620-------14689846982567688750468999-8899986 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNL 163 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~ 163 (232) +.. +....+..+.+.... .+.+++.++.|...... +.+.++++|..+....++........ .+.+..+ T Consensus 107 V~~---D~~~a~~~a~~~L~~-~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~ 182 (289) T 3g85_A 107 VNV---DNYKMGEKASLLFAK-KRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKL 182 (289) T ss_dssp EEE---CHHHHHHHHHHHHHH-TTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHH T ss_pred EEE---CCHHHHHHHHHHHHH-CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH T ss_conf 997---879999999999997-4997341145676783899998600367887299866314740443213578988877 Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC Q ss_conf 2---37838998078999999971354405----80399718 Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS 198 (232) Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig 198 (232) + ..+|+|+..+-..+..+.+.+.+.+. ++.++++| T Consensus 183 l~~~~~~~aii~~~d~~a~g~~~al~~~g~~vP~DisV~~ig 224 (289) T 3g85_A 183 MKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289) T ss_dssp TTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred HHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC T ss_conf 631788654331784999999999998798669623999847 No 35 >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Probab=80.50 E-value=2.5 Score=19.93 Aligned_cols=177 Identities=9% Similarity=0.037 Sum_probs=88.4 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC--CCCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf 99999998798299942100000785--20016447587999848467999886-2001363000415899997641012 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE--SVFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~--~~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) -..+.+++.|++++.+..-.-.+... ......-...|++|+.+......... ....+.|+.+++.... .... T Consensus 29 gi~~~a~~~g~~l~v~~~~~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~-----~~~~ 103 (290) T 3clk_A 29 GIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQLLQSSDVPYCFLSMGFD-----DDRP 103 (290) T ss_dssp HHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC----CHHHHHCC--CEEEESCC-------CCSC T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEECCCCCCC-----CCCC T ss_conf 99999998599899996899999999999999986698789997133455999999863786321466668-----9999 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH Q ss_conf 2354445456789998642201277753897215675620-------146898469825676887504689998899986 Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL 163 (232) Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~ 163 (232) .+.. +......++.+.... .+.+++.++.+...... +.+.+...+........................ T Consensus 104 ~V~~---d~~~~g~~a~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (290) T 3clk_A 104 FISS---DDEDIGYQATNLLIN-EGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKA 179 (290) T ss_dssp EEEC---CHHHHHHHHHHHHHT-TTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHH T ss_pred EEEE---CCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 8996---768999999988986-599569997177554226777799999999859986632245675156569999997 Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 2---37838998078999999971354405----803997188 Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) + .++++|+..+-..+..+...+...+. ++.+++++. T Consensus 180 ~~~~~~~~ai~~~~d~~a~~~~~~l~~~gl~iP~dv~vi~~d~ 222 (290) T 3clk_A 180 FGKNTDLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSIDG 222 (290) T ss_dssp HCTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC T ss_pred HHCCCCCEEECCCCHHHHHCHHHHHHHHHCCCCCCCHHCCCCC T ss_conf 5223311044147767653438999874056863100015587 No 36 >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Probab=79.98 E-value=2.6 Score=19.83 Aligned_cols=157 Identities=11% Similarity=0.011 Sum_probs=76.7 Q ss_pred HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH--H-HHHHHHHCCCC--CEECCCHH--HHHHHHHH Q ss_conf 999999879829994210000078520016447587999848467--9-99886200136--30004158--99997641 Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES--L-STLPANFCRHT--PIFAIGEA--SACLARQK 87 (232) Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a--v-~~~~~~~~~~~--~~~~vg~~--t~~~~~~~ 87 (232) ..+.|++.|++.+..+=- +.+.......+.++|.++.+.... + +-+.....+-. -...+|-. -..++.+. T Consensus 32 ~~~~le~~G~e~v~~~d~---~~~~~el~~~l~dadi~i~~~~~~~~i~~e~l~~~p~LK~I~~~~~G~D~id~~~~~~~ 108 (351) T 3jtm_A 32 IRDWLESQGHQYIVTDDK---EGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAA 108 (351) T ss_dssp CHHHHHHTTCEEEEESCC---SSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHT T ss_pred HHHHHHHCCCEEEEECCC---CCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 899999679589981799---89979999655897799977887786699999449997079886860565254433679 Q ss_pred CCCCCCCCCCCHHHHHHHHH---------------------------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCC Q ss_conf 01223544454567899986---------------------------422012777538972156756201468984698 Q gi|255764510|r 88 GFTQIFHGKDNSINLAKIIV---------------------------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKI 140 (232) Q Consensus 88 ~~~~~~~~~~~~~~~~~ll~---------------------------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~ 140 (232) |......+...+...++... ........++++.++.-......+.+.|+..|. T Consensus 109 gI~V~n~~g~~~~~vAE~~l~~iL~~~r~~~~~~~~~~~g~~~~~~~~~~~~~L~gk~vgIiG~G~IG~~va~~l~~fgm 188 (351) T 3jtm_A 109 GLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188 (351) T ss_dssp TCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHCCC T ss_conf 86999899878699999999999999752157776643286323455666331158766677746529999999986388 Q ss_pred EEEEEEEEEECCCCCCH---------HHHHHHHCCCCEEEEECHHH Q ss_conf 25676887504689998---------89998623783899807899 Q gi|255764510|r 141 PLRVIDCYYSQDIAYPE---------TTMKNLLQNADAILFYARSS 177 (232) Q Consensus 141 ~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~i~f~S~~~ 177 (232) .| ..|......... ..+.++++..|+|++.-|.+ T Consensus 189 ~V---~~~d~~~~~~~~~~~~~~~~~~~l~ell~~sDvI~l~~Plt 231 (351) T 3jtm_A 189 NL---LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLT 231 (351) T ss_dssp EE---EEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCC T ss_pred EE---EEECCCCCCHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCC T ss_conf 67---84458777666677519600478999985499999936787 No 37 >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Probab=79.69 E-value=2.7 Score=19.77 Aligned_cols=109 Identities=6% Similarity=-0.062 Sum_probs=64.4 Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEE Q ss_conf 54567899986422012777538972156-----75620146898469825676887504689998899986-2378389 Q gi|255764510|r 97 DNSINLAKIIVEQKVLFTPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAI 170 (232) Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i 170 (232) +........+........+.+++.++..+ ...+.+.+.+++.|+.+.....|..... +....+..+ ..++|+| T Consensus 124 ~~~~~~~~~~~~~~~~~~~~k~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-D~~~~v~~lk~~~~d~V 202 (392) T 3lkb_A 124 TSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNL-DNTALLKRFEQAGVEYV 202 (392) T ss_dssp CCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCC-CCHHHHHHHHHTTCCEE T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHCCCCCEE T ss_conf 64356788899999985389779999368706699999999999865987999980377764-12068887553599889 Q ss_pred EEE-CHHHHHHHHHHCCHHHCCEEEEE----CCHHHHHHHH Q ss_conf 980-78999999971354405803997----1889999999 Q gi|255764510|r 171 LFY-ARSSVLYFFSLPLPAKISAAFLC----LSNNIASAIP 206 (232) Q Consensus 171 ~f~-S~~~v~~~~~~~~~~~~~~~~~~----ig~~tA~~~~ 206 (232) ++. ++..+..|++.+...+.+..++. .++...+.+. T Consensus 203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g 243 (392) T 3lkb_A 203 VHQNVAGPVANILKDAKRLGLKMRHLGAHYTGGPDLIALAG 243 (392) T ss_dssp EEESCHHHHHHHHHHHHHTTCCCEEEECGGGCSHHHHHHHG T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH T ss_conf 99356527999999999849996499966778878998777 No 38 >3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} Probab=79.48 E-value=2.7 Score=19.73 Aligned_cols=205 Identities=15% Similarity=0.101 Sum_probs=91.3 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECH--HH-HHHHHHHHCCCCCEECCCHHHHHHHHHHC Q ss_conf 9999999987982999421000007-85200164475879998484--67-99988620013630004158999976410 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSS--ES-LSTLPANFCRHTPIFAIGEASACLARQKG 88 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~--~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~ 88 (232) ..+.+.++++|++++....-.-... ...+.......+|+||+.+. .+ ...+......+.|+..++..... .. T Consensus 28 ~~i~~~a~~~Gy~~~~~~~~~~~~~~~~~i~~li~~~~DgIii~~~~~~~~~~~l~~~~~~giPVV~~~~~~~~----~~ 103 (293) T 3l6u_A 28 NAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS----DA 103 (293) T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC----TT T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCC----CC T ss_conf 99999999869989999799998999999999997699999994332201389999999869979971777787----76 Q ss_pred CCCCCCCC--CCHHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH Q ss_conf 12235444--54567899986422--01277753897215675620-------146898469825676887504689998 Q gi|255764510|r 89 FTQIFHGK--DNSINLAKIIVEQK--VLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE 157 (232) Q Consensus 89 ~~~~~~~~--~~~~~~~~ll~~~~--~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~ 157 (232) ........ ..+...++.+.... ....+...+++..|...... +.+.+++.+. +.....+......... T Consensus 104 ~~~~v~~~~~~~g~~~a~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 182 (293) T 3l6u_A 104 VVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPT-LSIVDSVSGNYDPVTS 182 (293) T ss_dssp CSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTT-EEEEEEEECTTCHHHH T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-CCEEHHHHCCCCHHHH T ss_conf 330571363221278999998999985378741589961798762689999988866654588-4200111000004778 Q ss_pred -HHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHCCEE-EEEC--CHHHHHHHHHCCCCEEEECCCCCHHH Q ss_conf -8999862---37838998078999999971354405803-9971--88999999976996699879999889 Q gi|255764510|r 158 -TTMKNLL---QNADAILFYARSSVLYFFSLPLPAKISAA-FLCL--SNNIASAIPASYKNVVTVACFPKETS 223 (232) Q Consensus 158 -~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~~~~-~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ 223 (232) .....++ .++++|+..+-..+....+.+...+.... .+++ .+.+...+ ..|.....+...|.+.+ T Consensus 183 ~~~~~~~l~~~~~~~aI~~~~D~~A~g~~~al~~~g~~~~~~v~~dg~~~~~~~i-~~g~~~~tv~~~~~~~g 254 (293) T 3l6u_A 183 ERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDGNRAILEAV-DMKSMDATVVQSAEEMM 254 (293) T ss_dssp HHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH-HTTSSCEEEECCHHHHH T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH-HCCCCEEEEECCHHHHH T ss_conf 9999987422899619997881899999999997699999799997966999999-83997599957999999 No 39 >3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485} Probab=78.74 E-value=2.9 Score=19.59 Aligned_cols=181 Identities=10% Similarity=0.079 Sum_probs=93.9 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHHHHHHHHHHCC Q ss_conf 69999999987982999421000007852-00164475879998484679-99886200136300041589999764101 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEASACLARQKGF 89 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232) ...+.+.++++|+.++.++.-+-.-.... .....-...|++|+++...- ..+......+.|+..++.... .... T Consensus 27 ~~~i~~~a~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vDGiIv~~~~~~~~~~~~l~~~~iPvV~i~~~~~----~~~~ 102 (287) T 3bbl_A 27 LSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYNDPRVQFLLKQKFPFVAFGRSNP----DWDF 102 (287) T ss_dssp HHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTCHHHHHHHHTTCCEEEESCCST----TCCC T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCC T ss_conf 999999999779999999689998999999999981898789997898998999999967997999887688----9998 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHH-H Q ss_conf 2235444545678999864220127775389721567562-------0146898469825676887504689998899-9 Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTM-K 161 (232) Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~-~ 161 (232) ..+.. +.......+.+.... .+..++.++.+..... .+.+.+...|.......+............. . T Consensus 103 ~~V~~---d~~~~~~~a~~~L~~-~G~r~I~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (287) T 3bbl_A 103 AWVDI---DGTAGTRQAVEYLIG-RGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTL 178 (287) T ss_dssp CEEEE---CHHHHHHHHHHHHHH-HTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHH T ss_pred CEEEE---CHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 78984---889999999999997-49907999248977624566667899999972997431200135675568999999 Q ss_pred HHH-----CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf 862-----37838998078999999971354405----8039971889 Q gi|255764510|r 162 NLL-----QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 162 ~~~-----~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) ... .++++++.++...+...++.+...+. ++.+++++.. T Consensus 179 ~~~~~~~~~~~~ai~~~~d~~A~gv~~~l~~~g~~vp~disvig~d~~ 226 (287) T 3bbl_A 179 HLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDA 226 (287) T ss_dssp HHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCC T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCCCH T ss_conf 999746679975999887788899999999859998865023303876 No 40 >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Probab=77.19 E-value=2.1 Score=20.42 Aligned_cols=58 Identities=14% Similarity=-0.017 Sum_probs=33.7 Q ss_pred CEEEEECC--HHH----HHHHHHHHHHCCCCEEEECCEEEEC----------------CC--CCCCCCCCCCCCEEEEEC Q ss_conf 93898589--688----6999999998798299942100000----------------78--520016447587999848 Q gi|255764510|r 1 MYIVITRP--IKK----ALRTQEKIQKMGYIPVMMPLSYFIH----------------DR--ESVFLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~ilitRp--~~~----a~~~~~~L~~~G~~~i~~Pli~i~~----------------~~--~~~~~~~~~~~d~iiftS 56 (232) |||||.-- ... +...++-+++.|.++-.+.+-+... .. ......++.++|.|||-| T Consensus 7 mKilivy~S~~GnT~~lA~~ia~g~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iilgs 86 (211) T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211) T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEC T ss_conf 68999996998489999999999988659779999736657212220256665178765660665599998588118824 Q ss_pred HH Q ss_conf 46 Q gi|255764510|r 57 SE 58 (232) Q Consensus 57 ~~ 58 (232) |. T Consensus 87 P~ 88 (211) T 1ydg_A 87 PT 88 (211) T ss_dssp EE T ss_pred CC T ss_conf 51 No 41 >1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} SCOP: c.23.5.3 PDB: 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* 2qx6_A* 2qx8_A* 2qx9_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 2bzs_A* Probab=76.89 E-value=1.3 Score=21.69 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=20.5 Q ss_pred CEEEEEC--CHHH------HHHHHHHHHHCCCCEEEECC Q ss_conf 9389858--9688------69999999987982999421 Q gi|255764510|r 1 MYIVITR--PIKK------ALRTQEKIQKMGYIPVMMPL 31 (232) Q Consensus 1 M~ilitR--p~~~------a~~~~~~L~~~G~~~i~~Pl 31 (232) |||||.= |.++ +..+.+.+++.|.++...=| T Consensus 3 mKvLiI~g~P~~~S~s~~l~~~~~~~l~~~g~ev~~~dL 41 (230) T 1sg0_A 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL 41 (230) T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 889999828998568999999999999967997999987 No 42 >3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Probab=76.41 E-value=3.4 Score=19.19 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=86.8 Q ss_pred HHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHCCCCC Q ss_conf 99999987982999421000007-8520016447587999848467999886-200136300041589999764101223 Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKGFTQI 92 (232) Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232) +...+++.|+.++.+..-.-... ........-..+|++|+.+...-.-... ....+.|+..++......- ..+..+ T Consensus 34 i~~~a~~~Gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~--~~~~~v 111 (295) T 3hcw_A 34 ISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIGKPTSDID--HQFTHI 111 (295) T ss_dssp HHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEEEESCCCSSGG--GGSCEE T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCC--CCEEEE T ss_conf 999999869989999789997999999999995899889997665660999999975998899831477788--765698 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH---HHHHH Q ss_conf 5444545678999864220127775389721567562-------0146898469825676887504689998---89998 Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE---TTMKN 162 (232) Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~---~~~~~ 162 (232) . .+.......+...... .+..++.++.|..... -+.+.+++.|..++.+.+. ....... ..+.. T Consensus 112 ~---~d~~~a~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 185 (295) T 3hcw_A 112 D---NDNILASENLTRHVIE-QGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETS--NEREVILNYMQNLHT 185 (295) T ss_dssp E---ECHHHHHHHHHHHHHH-HCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEEC--SCHHHHHHHHHHHHH T ss_pred C---CCHHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECC--CCCHHHHHHHHHHHH T ss_conf 3---6689999999999997-298756775487431578888899999999769994244325--660356677777777 Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf 62---37838998078999999971354405----8039971889 Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) ++ ..+++|+.++-..+..+.+.+...+. ++.+++++.. T Consensus 186 ~~~~~~~~~aii~~~d~~a~g~~~~l~~~g~~ip~dv~vvg~d~~ 230 (295) T 3hcw_A 186 RLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFNDS 230 (295) T ss_dssp HHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEECCS T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCH T ss_conf 641477764345577899999999999869988946144414886 No 43 >2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=73.62 E-value=4 Score=18.76 Aligned_cols=176 Identities=8% Similarity=0.077 Sum_probs=90.7 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHH-HHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 9999999879829994210000078-52001644758799984846799988-620013630004158999976410122 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLP-ANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~-~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) .+...+.++|++++..+.-.-.... .-.........|+||+.+.+...... .....+.|+..++... .+... T Consensus 20 gi~~~a~~~gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~------~~~~~ 93 (276) T 2h0a_A 20 GIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTERPVVLVDAQN------PRYDS 93 (276) T ss_dssp HHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC------CCSCSSCEEEESSCC------TTSEE T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECC------CCCCE T ss_conf 999999986998999978998799999999998559998999547799899999864399489994136------88898 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------CHHHHHHHCCCEEEEEEEEEECCCCCCH-H Q ss_conf 35444545678999864220127775389721567562------------0146898469825676887504689998-8 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF------------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-T 158 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~------------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~ 158 (232) +.. +.......+.+... .....++.++.+..... -+.+.+.++|..+....+.......... . T Consensus 94 V~~---D~~~a~~~~~~~L~-~~g~~~i~~i~~~~~~~~~~~~~~~~R~~Gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (276) T 2h0a_A 94 VYL---DNRLGGRLAGAYLA-RFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRL 169 (276) T ss_dssp EEE---CSHHHHHHHHHHHT-TSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHH T ss_pred EEE---CCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH T ss_conf 995---65899999999998-71896269982478750123048999999999999980999771011111111157999 Q ss_pred HHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 999862---37838998078999999971354405----803997188 Q gi|255764510|r 159 TMKNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 159 ~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) .+..++ .++++|+..|...+....+.+...+. ++.++++.. T Consensus 170 ~~~~~l~~~~~~~aii~~~d~~a~g~~~al~~~g~~vp~~i~vvg~D~ 217 (276) T 2h0a_A 170 ALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDG 217 (276) T ss_dssp HHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESC T ss_pred HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEECCC T ss_conf 999988635677689967779999999999986998896531142278 No 44 >3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Probab=72.54 E-value=4.2 Score=18.60 Aligned_cols=142 Identities=10% Similarity=-0.039 Sum_probs=67.1 Q ss_pred CCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC Q ss_conf 7587999--84846799988620013630004158999976410122354445456789998642201277753897215 Q gi|255764510|r 47 QSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGG 124 (232) Q Consensus 47 ~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g 124 (232) +..+.|+ ++|..+............+.+..+..+............+............+...... ...+++.++.. T Consensus 72 ~~V~~viG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~k~vaii~~ 150 (379) T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLA-KGYKTWFLMLP 150 (379) T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHH-TTCCEEEEEEE T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECC T ss_conf 79869996142198999999998724772330355454456778885467345507899999999985-58848999568 Q ss_pred C-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHHHCCHHHC Q ss_conf 6-----75620146898469825676887504689998899986-2378389980-78999999971354405 Q gi|255764510|r 125 K-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFSLPLPAKI 190 (232) Q Consensus 125 ~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~~~~~~~~ 190 (232) + .....+.+.+++.|..+.....|..-. .+....+..+ ..++|+|++. ++.....|++.+...+. T Consensus 151 d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~q~~~~g~ 222 (379) T 3n0w_A 151 DAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET-QDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGL 222 (379) T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC-CCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTC T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC T ss_conf 870789999999999885499257678507987-668999999862499889994474579999999997599 No 45 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=72.22 E-value=4.3 Score=18.56 Aligned_cols=96 Identities=11% Similarity=-0.058 Sum_probs=55.2 Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEEC--HHHHHHH---HHHCCHHH-CCEEEEECC- Q ss_conf 6201468984698256768875046899988999862--3783899807--8999999---97135440-580399718- Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYA--RSSVLYF---FSLPLPAK-ISAAFLCLS- 198 (232) Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S--~~~v~~~---~~~~~~~~-~~~~~~~ig- 198 (232) ...+...|+..||+|..+-.... .+.+.... .++|.|.+++ ......+ .+.+...+ .++.+++-| T Consensus 20 ~~~va~~l~~~G~~V~~LG~~~p------~e~iv~~~~~~~~d~V~iS~~~~~~~~~~~~~i~~L~~~~~~~v~iivGG~ 93 (137) T 1ccw_A 20 NKILDHAFTNAGFNVVNIGVLSP------QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137) T ss_dssp HHHHHHHHHHTTCEEEEEEEEEC------HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEES T ss_pred HHHHHHHHHHCCCEEEECCCCCC------HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 99999999987987997786669------999999999839987887611344557799999999974999997999788 Q ss_pred --------HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf --------89999999769966998799998899999861 Q gi|255764510|r 199 --------NNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 199 --------~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) +..+..+++.|+..+. .+..+.+..++.|.+ T Consensus 94 ~~~~~~~~~~~~~~l~~~G~~~vf-~~gt~~~~~~~~i~~ 132 (137) T 1ccw_A 94 IVVGKQHWPDVEKRFKDMGYDRVY-APGTPPEVGIADLKK 132 (137) T ss_dssp CSSSSCCHHHHHHHHHHTTCSEEC-CTTCCHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHCCCCEEE-CCCCCHHHHHHHHHH T ss_conf 788744418899999975988897-998899999999999 No 46 >3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Probab=69.38 E-value=4.9 Score=18.18 Aligned_cols=178 Identities=9% Similarity=0.064 Sum_probs=91.4 Q ss_pred HHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 999999987982999421000007-852001644758799984846799-988620013630004158999976410122 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) .+.+.+.+.|++++....-.-... ..-........+|++|+.+..... ........+.|+..++.... ..... T Consensus 36 ~i~~~a~~~gy~l~l~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~iPvV~~d~~~~-----~~~~~ 110 (303) T 3kke_A 36 GVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLEGVPAVTINSRVP-----GRVGS 110 (303) T ss_dssp HHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHTTSCEEEESCCCT-----TCCCE T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC-----CCCCE T ss_conf 9999999769989999589997999999999995897889840346763999999975998899715579-----98997 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHH Q ss_conf 354445456789998642201277753897215675620-------146898469825676887504689998-899986 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNL 163 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~ 163 (232) +. .+.......+.+.... .+.+++.++.|...... +.+.+.+.|..+....++......... .....+ T Consensus 111 V~---~d~~~~~~~~~~~L~~-~G~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (303) T 3kke_A 111 VI---LDDQKGGGIATEHLIT-LGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTL 186 (303) T ss_dssp EE---ECHHHHHHHHHHHHHH-TTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHH T ss_pred EE---ECHHHHHHHHHHHHHH-HHHCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHH T ss_conf 99---7459999999999998-5205576415887660799999999999998599854223024566666799999999 Q ss_pred -----H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf -----2---37838998078999999971354405----8039971889 Q gi|255764510|r 164 -----L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 164 -----~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) + ..+++|+..+-..+..+.+.+...+. ++.++++... T Consensus 187 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~dv~vig~d~~ 235 (303) T 3kke_A 187 YRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINTT 235 (303) T ss_dssp HHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCH T ss_conf 9854431257984899667788999999999839865556169975787 No 47 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} Probab=68.98 E-value=5 Score=18.13 Aligned_cols=204 Identities=10% Similarity=0.091 Sum_probs=92.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE-ECCCH Q ss_conf 938985896886999999998798299942100000785200164475879998484679-9988620013630-00415 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI-FAIGE 78 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~-~~vg~ 78 (232) +|||++.+.++ +-...|++++ ++...+.. ..+.....+.++|+++..+..-+ +-+..... ..++ ...|. T Consensus 3 ~kilv~~~~~~--~~~~~l~~~~-~v~~~~~~-----~~e~l~~~~~~~d~ii~~~~~~i~~~~l~~~~-~Lk~I~~~~a 73 (333) T 2d0i_A 3 PKVGVLLKMKR--EALEELKKYA-DVEIILYP-----SGEELKGVIGRFDGIIVSPTTKITREVLENAE-RLKVISCHSA 73 (333) T ss_dssp SEEEECSCCCH--HHHHHHHTTS-EEEECCSC-----CHHHHHHHGGGCSEEEECTTSCBCHHHHTTCT-TCCEEEESSS T ss_pred CEEEEECCCCH--HHHHHHHCCC-CEEEEECC-----CHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC-CCEEEEECCC T ss_conf 66999688899--9999987049-99998388-----99999998669999998389982899991699-9809988981 Q ss_pred HH----HHHHHHHCCCCCCCCCCCHHHHHHHH----HHH---------------------------HHCCCCCCEEEEEC Q ss_conf 89----99976410122354445456789998----642---------------------------20127775389721 Q gi|255764510|r 79 AS----ACLARQKGFTQIFHGKDNSINLAKII----VEQ---------------------------KVLFTPQKPLIYLG 123 (232) Q Consensus 79 ~t----~~~~~~~~~~~~~~~~~~~~~~~~ll----~~~---------------------------~~~~~~~~~vl~~~ 123 (232) ++ ..++.+.|......+...+...++.. ... ......++++.++. T Consensus 74 G~d~id~~~~~~~gI~v~n~~~~~~~~VAE~~l~~iL~l~R~l~~~~~~~~~g~~~~~~~~~~~~~~~~~l~g~~vgIiG 153 (333) T 2d0i_A 74 GYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILG 153 (333) T ss_dssp CCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEEC T ss_pred CCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEEE T ss_conf 33401799998679999978986647899999999999972635766665348732111001356654310287799991 Q ss_pred CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEEE Q ss_conf 5675620146898469825676887504689998-------899986237838998078999999971354405803997 Q gi|255764510|r 124 GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFLC 196 (232) Q Consensus 124 g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ 196 (232) -......+.+.++..|..|. .|......... ..+.+++...|+|++.-|.+-+. --. T Consensus 154 ~G~IG~~va~~~~~fg~~v~---~~~~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T-------------~~l 217 (333) T 2d0i_A 154 MGAIGKAIARRLIPFGVKLY---YWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDT-------------YHI 217 (333) T ss_dssp CSHHHHHHHHHHGGGTCEEE---EECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTT-------------TTS T ss_pred CCHHHHHHHHHHHCCCCEEE---EECCCCCCCHHHHCCCCCCCHHHHCCCCCEEEECCCCCCCC-------------CCC T ss_conf 07899999998625686588---50588871034430724379889526499999878876666-------------441 Q ss_pred CCHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHC Q ss_conf 18899999997699669987--999988999998614 Q gi|255764510|r 197 LSNNIASAIPASYKNVVTVA--CFPKETSLLKLLPLR 231 (232) Q Consensus 197 ig~~tA~~~~~~g~~~~~va--~~p~~~~ll~al~~~ 231 (232) |+...-+.++. + .-+-++ +-=++++|+++|... T Consensus 218 i~~~~l~~mk~-~-~lIN~aRG~vVde~aL~~aL~~g 252 (333) T 2d0i_A 218 INEERVKKLEG-K-YLVNIGRGALVDEKAVTEAIKQG 252 (333) T ss_dssp BCHHHHHHTBT-C-EEEECSCGGGBCHHHHHHHHHTT T ss_pred HHHHHHHHCCC-C-CEEECCCCHHCCHHHHHHHHHHC T ss_conf 24547764565-7-66986774321699999999749 No 48 >3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Probab=68.97 E-value=5 Score=18.13 Aligned_cols=180 Identities=9% Similarity=0.015 Sum_probs=86.9 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 99999999879829994210000078-52001644758799984846799988620013630004158999976410122 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) ..+.+.+++.|++++..+.-.-.... ...........|++|+.+...-...........|+..++..... ...... T Consensus 34 ~gi~~~a~~~gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ip~V~~~~~~~~---~~~~~~ 110 (301) T 3miz_A 34 RGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPESGDVSIPTVMINCRPQT---RELLPS 110 (301) T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCCTTCCCCEEEEEEECSS---TTSSCE T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCC---CCCCCE T ss_conf 99999999779989999799996999999999875787689961631001017778449998999612578---888878 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCC--C---C-HH Q ss_conf 354445456789998642201277753897215675620-------146898469825676887504689--9---9-88 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIA--Y---P-ET 158 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~--~---~-~~ 158 (232) +. .+.......+.+.... ...+++.++.+...... +.+.+.+.|.......++.....+ . . .. T Consensus 111 V~---~D~~~~~~~~~~~L~~-~g~~~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (301) T 3miz_A 111 IE---PDDYQGARDLTRYLLE-RGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFA 186 (301) T ss_dssp EE---ECHHHHHHHHHHHHHT-TTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHH T ss_pred EE---ECHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH T ss_conf 99---7799999999999998-1897599984785456414665999999998599867624664034530466779999 Q ss_pred HHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 999862---37838998078999999971354405----803997188 Q gi|255764510|r 159 TMKNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 159 ~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) ....++ ..+++|+..|...+..+.+.+...+. ++.++|++. T Consensus 187 ~~~~ll~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~ivg~d~ 234 (301) T 3miz_A 187 AATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDD 234 (301) T ss_dssp HHHHHHTSTTCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBC T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC T ss_conf 999999559999830038899999999999981998896300241277 No 49 >2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* Probab=68.50 E-value=5.2 Score=18.07 Aligned_cols=180 Identities=9% Similarity=0.046 Sum_probs=87.2 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf 9999999987982999421000007-8520016447587999848467999-8862001363000415899997641012 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) ..+.+.++++|+.++.++.-.-... ...+........|++|+.+...-.. +........++..++.... ..... T Consensus 36 ~~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~~~vv~~~~~~~----~~~~~ 111 (289) T 2fep_A 36 RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEE----QEETP 111 (289) T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHSSSCEEEESCCCT----TCCSC T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCC----CCCCC T ss_conf 99999999869989999689997999999999996398747996315887999999864997899613467----89899 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHH Q ss_conf 235444545678999864220127775389721567562--------0146898469825676887504689998-8999 Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMK 161 (232) Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~ 161 (232) .+. .+.......+...... .+..++.+++|..... .+...+++.|..+....++......... .... T Consensus 112 ~V~---~D~~~~~~~~~~~l~~-~G~r~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (289) T 2fep_A 112 SVA---IDYEQAIYDAVKLLVD-KGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQ 187 (289) T ss_dssp EEE---CCHHHHHHHHHHHHHH-TTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHH T ss_pred EEE---ECHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHH T ss_conf 899---8789999999999997-499579996267543301345667889999984999772227732431144899999 Q ss_pred HHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf 862---37838998078999999971354405----8039971889 Q gi|255764510|r 162 NLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) .++ ..+++|+..+-..+..+...+.+.+. ++.+++++.. T Consensus 188 ~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vP~di~i~g~d~~ 233 (289) T 2fep_A 188 HLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNT 233 (289) T ss_dssp HHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC T ss_pred HHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCH T ss_conf 9995699996587478899999999999859999974599613882 No 50 >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Probab=67.80 E-value=5.3 Score=17.98 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=38.0 Q ss_pred CHHHHHHH-HCCCCEEEEECHHHHHHHHHH--CCHHHCCEE--EEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 98899986-237838998078999999971--354405803--997188999999976996699879999889999986 Q gi|255764510|r 156 PETTMKNL-LQNADAILFYARSSVLYFFSL--PLPAKISAA--FLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 156 ~~~~~~~~-~~~~d~i~f~S~~~v~~~~~~--~~~~~~~~~--~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) .++.+..+ +++.++++..+++-..++.-. +.......+ .-+-++...+.++..|...++.+..-..+.|.+++. T Consensus 60 ~~~~L~~a~i~~a~~vi~~t~~d~~n~~~~l~~r~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~~~~a~~l~~~l~ 138 (153) T 1id1_A 60 DSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLN 138 (153) T ss_dssp SHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHT T ss_pred CHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC T ss_conf 9999975798833899998698799999999999978998399998898999999977989999889999999999847 No 51 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Probab=67.46 E-value=4.1 Score=18.67 Aligned_cols=111 Identities=7% Similarity=0.002 Sum_probs=64.8 Q ss_pred CCCEEEE--ECCCCCC----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHHHH Q ss_conf 7753897--2156756----201468984698256768875046899988999862378389980789-------99999 Q gi|255764510|r 115 PQKPLIY--LGGKPRN----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVLYF 181 (232) Q Consensus 115 ~~~~vl~--~~g~~~~----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~~~ 181 (232) ..+++++ -+..+.. ..+.+.|++.|..+..+.++.... .....+...+.+.|+++|.||. .+..| T Consensus 264 ~~~kv~Ivy~S~~G~T~~~A~~i~~~l~~~g~~~~~~~~~d~~~--~~~~~i~~~~~~~d~~~~GsPT~~~~~~p~~~~~ 341 (410) T 1vme_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER--PAISEILKDIPDSEALIFGVSTYEAEIHPLMRFT 341 (410) T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC--CCHHHHHHHSTTCSEEEEEECEETTEECHHHHHH T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCC--CCHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHH T ss_conf 67724999975647799999999999986599349998555688--8645667778528979998577389667899999 Q ss_pred HHHCCHHHC-CEEEEECC---------HHHHHHHHHCCCCEEE---E-CCCCCHHHHHHH Q ss_conf 971354405-80399718---------8999999976996699---8-799998899999 Q gi|255764510|r 182 FSLPLPAKI-SAAFLCLS---------NNIASAIPASYKNVVT---V-ACFPKETSLLKL 227 (232) Q Consensus 182 ~~~~~~~~~-~~~~~~ig---------~~tA~~~~~~g~~~~~---v-a~~p~~~~ll~a 227 (232) ++.+..... ...+.++| +...+.++..|++.+- + ...|+++.+-++ T Consensus 342 l~~l~~~~~~~K~~~~fgsygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~le~~ 401 (410) T 1vme_A 342 LLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSFTEIKGSNMDERKIEEA 401 (410) T ss_dssp HHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEEEEEECSTTCCTHHHHHH T ss_pred HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCEEEECCCCCHHHHHHH T ss_conf 999872534899899998279870899999999998799896755798899999999999 No 52 >3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} Probab=66.55 E-value=5.7 Score=17.83 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=86.2 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCC-CCCCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 9999999879829994210000078520-016447587999848467999-88620013630004158999976410122 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESV-FLAMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~~~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) .+...++++|++++..+.-.-....... ........|++|+.+...-.. +......+.|+..++.... ...... T Consensus 31 gi~~~~~~~g~~l~v~~~~~~~~~~~~~~~~l~~~~vDgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~~----~~~~~~ 106 (288) T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPNDPRVRFMTERNMPFVTHGRSDM----GIEHAF 106 (288) T ss_dssp HHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCCCS----SCCCEE T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE T ss_conf 9999999879989999689996999999999995898689984776764999999976996999176578----899848 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHH----H Q ss_conf 354445456789998642201277753897215675620-------14689846982567688750468999889----9 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETT----M 160 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~----~ 160 (232) + . .+......++.+... ....++|.++.+...... +.+.+++.|........+.. ....+. . T Consensus 107 V--~-~d~~~~~~~a~~~L~-~~g~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~gl~~~~~~~~~~---~~~~~~~~~~~ 179 (288) T 3gv0_A 107 H--D-FDNEAYAYEAVERLA-QCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTI---ETPLEKIRDFG 179 (288) T ss_dssp E--E-ECHHHHHHHHHHHHH-HTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCT---TSCHHHHHHHH T ss_pred E--E-ECHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCC---CCHHHHHHHHH T ss_conf 9--7-089999999999998-629960899648754323878889999999983998562331133---10023678999 Q ss_pred HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 9862---37838998078999999971354405----803997188 Q gi|255764510|r 161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) ..++ .++|+|+.+|-..+..+.+.+...+. ++.++|++. T Consensus 180 ~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~dv~iigfd~ 225 (288) T 3gv0_A 180 QRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQS 225 (288) T ss_dssp HHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEES T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC T ss_conf 9986422577523446669999999999984998898518999778 No 53 >3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale} Probab=66.08 E-value=5.8 Score=17.77 Aligned_cols=57 Identities=9% Similarity=-0.008 Sum_probs=36.4 Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHH Q ss_conf 38985896886999999998798299942100000785-2001644758799984846 Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~ 58 (232) +||++.+...+.++++.++.+|++++.++.-.-...+. .+......+.++++++..+ T Consensus 97 ~vlv~~~G~f~~~~~~ia~~~G~~v~~i~~~~g~~~d~e~i~~~i~~~~k~v~~~~~~ 154 (376) T 3f0h_A 97 KVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDE 154 (376) T ss_dssp CEEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEE T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEECCC T ss_conf 8999959888999999999819974463168998779899998725588489983467 No 54 >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* Probab=65.81 E-value=5.8 Score=17.74 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=7.9 Q ss_pred CCCCCEEEEECHH Q ss_conf 4758799984846 Q gi|255764510|r 46 QQSYGAIAITSSE 58 (232) Q Consensus 46 ~~~~d~iiftS~~ 58 (232) +...|.|||.+|- T Consensus 84 i~~AD~iV~~~P~ 96 (201) T 1t5b_A 84 LKAHDVIVIAAPM 96 (201) T ss_dssp HHHCSEEEEECCC T ss_pred HHHCCEEEEECCC T ss_conf 9858908997376 No 55 >3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A Probab=64.10 E-value=6.3 Score=17.54 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=38.5 Q ss_pred CCHHHCCEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 3544058039971--889999999769966998799998899999861 Q gi|255764510|r 185 PLPAKISAAFLCL--SNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 185 ~~~~~~~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) ....+.+..+++| |+...++++.++|.-..+..+||..+|-.||.. T Consensus 224 ~~RFG~k~tyvvIGDG~dEe~AAk~l~~PFwrI~sh~Dl~~l~~al~~ 271 (274) T 3geb_A 224 MQRFGRKAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALEL 271 (274) T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHTTCCEEECCSHHHHHHHHHHHHH T ss_pred HHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH T ss_conf 998689856999789767999999629985880277119999775531 No 56 >1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 Probab=62.70 E-value=6.7 Score=17.39 Aligned_cols=193 Identities=12% Similarity=0.117 Sum_probs=90.3 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 9999999987982999421000007-852001644758799984846799988620013630004158999976410122 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) ..+...++++|+.++.+..-.-... ............|+||+++...... ......+.|+..++.. ..++.. T Consensus 22 ~~i~~~~~~~gy~~~i~~~~~~~~~~~~~l~~l~~~~vdgiI~~~~~~~~~-~~~~~~~~p~v~i~~~------~~~~~~ 94 (255) T 1byk_A 22 QTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE-EMLAHWQSSLVLLARD------AKGFAS 94 (255) T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-TTSGGGSSSEEEESSC------CSSCEE T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHCCCCEEEEECC------CCCCCE T ss_conf 999999998599899994899989999999999956998999858996569-9999779998999347------899988 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH Q ss_conf 35444545678999864220127775389721567562--------0146898469825676887504689998899986 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL 163 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~ 163 (232) +. .+.......+.+.... .+.+++.++.+..... -+.+.++++|.... ..+..............+ T Consensus 95 V~---~d~~~~~~~~~~~l~~-~G~~~I~~i~~~~~~~~~~~~R~~g~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~ 168 (255) T 1byk_A 95 VC---YDDEGAIKILMQRLYD-QGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPV--AALPGLAMKQGYENVAKV 168 (255) T ss_dssp EE---ECHHHHHHHHHHHHHH-TTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCE--EECCCSCHHHHHHHSGGG T ss_pred EE---ECHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--EECCCCCHHHHHHHHHHH T ss_conf 99---8779999999999986-49956997777856552789999999999998699841--202777778899999985 Q ss_pred H-CCCCEEEEECHHHHHHHHHHCCHHHC-CEEEEECCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 2-37838998078999999971354405-803997188999999976996699879999 Q gi|255764510|r 164 L-QNADAILFYARSSVLYFFSLPLPAKI-SAAFLCLSNNIASAIPASYKNVVTVACFPK 220 (232) Q Consensus 164 ~-~~~d~i~f~S~~~v~~~~~~~~~~~~-~~~~~~ig~~tA~~~~~~g~~~~~va~~p~ 220 (232) + .++|+|+.+|-..+..+.+.+...+. ...+++++..--.....-+.. .+...+. T Consensus 169 l~~~~~ai~~~~D~~A~g~~~~l~~~g~~d~~iig~d~~~~~~~~~p~lt--tv~~~~~ 225 (255) T 1byk_A 169 ITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIV--TVDPGYA 225 (255) T ss_dssp CCTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCCHHHHHHCTTSE--EEBCCHH T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCE--EEEECHH T ss_conf 06567613234258999999999981999872999998289983389956--9983999 No 57 >3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} Probab=62.35 E-value=6.8 Score=17.35 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=43.0 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC----CCHHHHHHHHCCCCEEEEECHHHH Q ss_conf 77753897215675620146898469825676887504689----998899986237838998078999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA----YPETTMKNLLQNADAILFYARSSV 178 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~----~~~~~~~~~~~~~d~i~f~S~~~v 178 (232) ..++++.++.-......+.+.|+..|.+|..+..+...... .....+.+++.+.|+|++.-|.+- T Consensus 137 l~g~tvgIvG~G~IG~~va~~l~~fG~~v~~~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~~~~Plt~ 205 (315) T 3kbo_A 137 REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTA 205 (315) T ss_dssp GGGCCEEEESCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTEEEEESGGGHHHHHHTCSEEEECCCCCT T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCEEECCCCCEEECCCCCCC T ss_conf 467578997618389999999987499255202344323231212331010000320337840478853 No 58 >3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} Probab=61.74 E-value=7 Score=17.28 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=87.5 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCC----CCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHC Q ss_conf 999999987982999421000007852----0016447587999848467999886-20013630004158999976410 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRES----VFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKG 88 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~----~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~ 88 (232) .+.+.+++.|++++.... ...... .....-...|++|+.+......... ......++..++... .... T Consensus 24 gi~~~~~~~Gy~~~~~~s---~~~~~~e~~~i~~l~~~~vdgiIv~~~~~~~~~~~~l~~~~~pvV~i~~~~----~~~~ 96 (275) T 3d8u_A 24 SFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELS----SKAS 96 (275) T ss_dssp HHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHHTCCEEEESSSC----SSSS T ss_pred HHHHHHHHCCCEEEEEEC---CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCC----CCCC T ss_conf 999999985999999968---999899999999999739989995798799899999997599889984146----8898 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHH Q ss_conf 122354445456789998642201277753897215675620-------14689846982567688750468999-8899 Q gi|255764510|r 89 FTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTM 160 (232) Q Consensus 89 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~ 160 (232) ...+. .+.......+...... .+.+++.++.+...... +.+.+.+.|..+....++........ .+.. T Consensus 97 ~~~V~---~d~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (275) T 3d8u_A 97 YLNIG---VDHFEVGKACTRHLIE-QGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGL 172 (275) T ss_dssp SEEEC---BCHHHHHHHHHHHHHT-TTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHH T ss_pred CCEEE---ECHHHHHHHHHHHHHH-CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH T ss_conf 88899---4617999999998874-0364152046686416899999999999997499876168960465305689999 Q ss_pred HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf 9862---37838998078999999971354405----8039971889 Q gi|255764510|r 161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) ..++ .++++|+..+-..+..+.+.+...+. ++.+++++.. T Consensus 173 ~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~di~vvg~d~~ 219 (275) T 3d8u_A 173 AKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGS 219 (275) T ss_dssp HHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESSCC T ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCH T ss_conf 99987502443223078899999999999738878860699997881 No 59 >2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Probab=61.51 E-value=5.7 Score=17.81 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=30.6 Q ss_pred CEEEEECCH-HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC Q ss_conf 938985896-88699999999879829994210000078520016447587999848 Q gi|255764510|r 1 MYIVITRPI-KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~ilitRp~-~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232) |+|+|.=-. .....+.+.|+++|+++...|- +....++.++|.||++- T Consensus 14 ~~i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~--------~~~~~~l~~~dgiIl~G 62 (212) T 2a9v_A 14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPN--------DIDSSELDGLDGLVLSG 62 (212) T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEET--------TSCGGGGTTCSEEEEEE T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC--------CCCHHHHHCCCEEEECC T ss_conf 67999999876899999999978983899969--------79999983699199979 No 60 >3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} Probab=60.37 E-value=7.4 Score=17.14 Aligned_cols=13 Identities=0% Similarity=-0.217 Sum_probs=8.4 Q ss_pred CCCCCEEEEECHH Q ss_conf 4758799984846 Q gi|255764510|r 46 QQSYGAIAITSSE 58 (232) Q Consensus 46 ~~~~d~iiftS~~ 58 (232) +...|.|||.||- T Consensus 90 i~~AD~iV~~sP~ 102 (211) T 3p0r_A 90 FLEADKVVFGFPL 102 (211) T ss_dssp HHHCSEEEEEEEC T ss_pred HHHCCEEEEECCC T ss_conf 9838989997066 No 61 >3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} Probab=60.15 E-value=7.4 Score=17.11 Aligned_cols=179 Identities=9% Similarity=0.041 Sum_probs=83.9 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHHHHHHHH-HCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 999999987982999421000007852-00164475879998484679998862-0013630004158999976410122 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESLSTLPAN-FCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av~~~~~~-~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) .+...+.+.|++.+.++.-.-...... .....-...|++|+.+...-..+... .....|+..++.... ...... T Consensus 48 ~i~~~~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~ip~v~~~~~~~----~~~~~~ 123 (305) T 3huu_A 48 GINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLN----YENIIH 123 (305) T ss_dssp HHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHHTTCCEEEESCCCS----STTCCE T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE T ss_conf 9999999759989999578866899999999984787549833777876899999864998899815545----688876 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCC-CHHHHHHH Q ss_conf 354445456789998642201277753897215675620-------1468984698256768875046899-98899986 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAY-PETTMKNL 163 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~-~~~~~~~~ 163 (232) +. .+....+..+...... .+.+++.++.+...... +.+.+...|...+............ ....+... T Consensus 124 v~---~d~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (305) T 3huu_A 124 ID---NDNIDAAYQLTQYLYH-LGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQYCIDA 199 (305) T ss_dssp EE---CCHHHHHHHHHHHHHH-TTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHHHC------- T ss_pred EE---CCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 84---3727999999999998-0897531267886542167999999999998499831000244321155799999957 Q ss_pred HCCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf 237838998078999999971354405----8039971889 Q gi|255764510|r 164 LQNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 164 ~~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) ...+++|+..+-..+..+.+.+.+.+. ++.+++++.. T Consensus 200 ~~~~~ai~~~~d~~A~g~~~al~~~g~~iP~Dv~vig~d~~ 240 (305) T 3huu_A 200 SHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTS 240 (305) T ss_dssp -CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCS T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCH T ss_conf 99976554566477777999999849998872599822885 No 62 >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Probab=59.98 E-value=7.5 Score=17.10 Aligned_cols=203 Identities=13% Similarity=0.068 Sum_probs=94.0 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCC----CCCCCCCCCCEEEEECH--HH-HHHHHHHHCCCCCEECCCHHHHHHHH Q ss_conf 9999999987982999421000007852----00164475879998484--67-99988620013630004158999976 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRES----VFLAMQQSYGAIAITSS--ES-LSTLPANFCRHTPIFAIGEASACLAR 85 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~----~~~~~~~~~d~iiftS~--~a-v~~~~~~~~~~~~~~~vg~~t~~~~~ 85 (232) ....+.++++|++.+.... ...... +........|+||+.+. .+ ...+......+.|+..+.......-. T Consensus 22 ~~~~~~a~~~G~~~~~~~~---~~~~~~q~~~i~~li~~~vDgIii~~~~~~~~~~~i~~a~~~gipvv~~d~~~~~~~~ 98 (306) T 2vk2_A 22 NVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK 98 (306) T ss_dssp HHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSCG T ss_pred HHHHHHHHHCCCEEEEEEC---CCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC T ss_conf 9999999986998999959---9999999999999997698999990788211599999999769819998145566677 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCH-------HHHHHHCCCEEEEEEEEEECCCCCC Q ss_conf 41012235444545678999864220--12777538972156756201-------4689846982567688750468999 Q gi|255764510|r 86 QKGFTQIFHGKDNSINLAKIIVEQKV--LFTPQKPLIYLGGKPRNFHF-------EDYLIEHKIPLRVIDCYYSQDIAYP 156 (232) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~~vl~~~g~~~~~~l-------~~~L~~~g~~v~~~~vY~~~~~~~~ 156 (232) ........ .+.......+.+... ....+..++++.|....... .+.|.+.+ .......+........ T Consensus 99 ~~~~~~v~---~~~~~~g~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~R~~g~~~~l~~~~-~~~~~~~~~~~~~~~~ 174 (306) T 2vk2_A 99 SLYMTTVT---ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRSQSGDFTRSK 174 (306) T ss_dssp GGSSEEEE---CCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCT-TEEEEEEEECTTCHHH T ss_pred CCEEEEEE---CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCHHH T ss_conf 73034683---3708878889999998537787338863277776089999999999998669-9850145522100478 Q ss_pred H-HHHHHHH------CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHH Q ss_conf 8-8999862------37838998078999999971354405----8039971--88999999976996699879999889 Q gi|255764510|r 157 E-TTMKNLL------QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCL--SNNIASAIPASYKNVVTVACFPKETS 223 (232) Q Consensus 157 ~-~~~~~~~------~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ 223 (232) . .....++ .++++|+..+...+....+.+...+. ++.++++ ++.+.+.++ .|.-...+...|..-+ T Consensus 175 ~~~~~~~~l~~~~~~p~i~ai~~~~d~~a~g~~~al~~~G~~~~~di~i~g~D~~~~~~~~i~-~g~~~~tv~~~~~~~~ 253 (306) T 2vk2_A 175 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM-DGEANASVELTPNMAG 253 (306) T ss_dssp HHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHH-TTCCCEEEECCSCCHH T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH-CCCCEEEEECCHHHHH T ss_conf 999999999873258863158735829999999999983999999579999998299999987-6996699958899999 No 63 >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Probab=59.31 E-value=7.7 Score=17.03 Aligned_cols=106 Identities=3% Similarity=-0.133 Sum_probs=55.7 Q ss_pred CCEEEEEC--CC---CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEEC--HHHHH---HHHH Q ss_conf 75389721--56---756201468984698256768875046899988999862--3783899807--89999---9997 Q gi|255764510|r 116 QKPLIYLG--GK---PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYA--RSSVL---YFFS 183 (232) Q Consensus 116 ~~~vl~~~--g~---~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S--~~~v~---~~~~ 183 (232) ..+|++-+ ++ .+...+...|+..||.|..+-.. .+.+.+.... .++|.|.+++ ..... .+.+ T Consensus 18 k~rvvia~~~~D~HdiG~~~va~~l~~~G~eV~~LG~~------~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 91 (161) T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161) T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH T ss_conf 98799980498624788999999999789889978977------899999999986699899985576644899999999 Q ss_pred HCCHHH-CCEEEEEC---CHHHHHHHHHCCCCEEEECCCCCHHHHHHHH Q ss_conf 135440-58039971---8899999997699669987999988999998 Q gi|255764510|r 184 LPLPAK-ISAAFLCL---SNNIASAIPASYKNVVTVACFPKETSLLKLL 228 (232) Q Consensus 184 ~~~~~~-~~~~~~~i---g~~tA~~~~~~g~~~~~va~~p~~~~ll~al 228 (232) .+...+ .++.+++- .....+.+++.|...+.-+.. +.+..++-+ T Consensus 92 ~L~~~g~~~i~i~vGG~~~~~d~~~l~~~Gvd~vF~pgt-~~~e~v~~l 139 (161) T 2yxb_A 92 KLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGT-SLGEIIEKV 139 (161) T ss_dssp HHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTC-CHHHHHHHH T ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCC-CHHHHHHHH T ss_conf 999759999879996687988899999779888849989-999999999 No 64 >3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} Probab=59.28 E-value=7.7 Score=17.02 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=98.6 Q ss_pred HHHHHHHCCCCEEEECCEEEECCC--CCCCCCCCCCCCEEEEECHH---HHHHHHHHHCCCCCEECCCHHHHHHHHHHCC Q ss_conf 999999879829994210000078--52001644758799984846---7999886200136300041589999764101 Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHDR--ESVFLAMQQSYGAIAITSSE---SLSTLPANFCRHTPIFAIGEASACLARQKGF 89 (232) Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~~--~~~~~~~~~~~d~iiftS~~---av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232) +....+++|+++...-.-+-.+-. ...........|+||+.+.. ....+......++++.++..... .... T Consensus 26 ~~~aa~~~g~~l~~~~~~~~d~~~q~~~l~~~i~~~~dgIii~~~d~~~~~~~l~~~~~~gIpvv~~d~~~~----~~~~ 101 (305) T 3g1w_A 26 FEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAP----DSHA 101 (305) T ss_dssp HHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCT----TSCC T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC----CCCC T ss_conf 999999729989999799999999999999999769899999788567689999999976995688730443----3454 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCC------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHH Q ss_conf 22354445456789998642201-2777538972156756------20146898469825676887504689998-8999 Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQKVL-FTPQKPLIYLGGKPRN------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMK 161 (232) Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~vl~~~g~~~~------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~ 161 (232) .. ... .+.........+.... ......++++.+.... .-+.+.|++.+..++.+.++......... .... T Consensus 102 ~~-~v~-~d~~~~g~~aa~~l~~~~~~~~~~~~~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (305) T 3g1w_A 102 HS-FLG-TNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAH 179 (305) T ss_dssp SC-EEE-CCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHH T ss_pred CE-EEC-CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH T ss_conf 13-305-6718899999999999730367517852243217889999999999986899731123147875788999999 Q ss_pred HHH---CCCCEEEEECHHHHHHHHHHCCHHHC--CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHH Q ss_conf 862---37838998078999999971354405--8039971--88999999976996699879999889 Q gi|255764510|r 162 NLL---QNADAILFYARSSVLYFFSLPLPAKI--SAAFLCL--SNNIASAIPASYKNVVTVACFPKETS 223 (232) Q Consensus 162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ 223 (232) .++ .++|+|+..+...+....+.+...+. ++.++++ ++.+.+.+++..+. ..+...|...+ T Consensus 180 ~~l~~~p~~~~I~~~~d~~a~g~~~al~~~g~~~~v~vvg~d~~~~~~~~i~~g~i~-atv~~~~~~~G 247 (305) T 3g1w_A 180 QLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEGIIS-ATLAQGTWNMG 247 (305) T ss_dssp HHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHTTSSC-EEEEECHHHHH T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCE-EEEECCHHHHH T ss_conf 998508986079955848999999999975999982999948989999999859956-99928999999 No 65 >1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* Probab=59.07 E-value=5.5 Score=17.88 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=15.4 Q ss_pred HHHHHHHHHHCCCCEEEECCEE Q ss_conf 6999999998798299942100 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSY 33 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~ 33 (232) ++.+...|++.|.++...=|.+ T Consensus 22 ~~~~~~~l~~~G~eV~v~DLy~ 43 (273) T 1d4a_A 22 KEAAAAALKKKGWEVVESDLYA 43 (273) T ss_dssp HHHHHHHHHHTTCEEEEEETTT T ss_pred HHHHHHHHHHCCCEEEEEECCC T ss_conf 8510789997899799998733 No 66 >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Probab=58.01 E-value=8.1 Score=16.89 Aligned_cols=95 Identities=15% Similarity=0.008 Sum_probs=53.2 Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEECHHHHHHH--HHHCCHHHCCEE--EEECCHHHH Q ss_conf 620146898469825676887504689998899986-237838998078999999--971354405803--997188999 Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYARSSVLYF--FSLPLPAKISAA--FLCLSNNIA 202 (232) Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S~~~v~~~--~~~~~~~~~~~~--~~~ig~~tA 202 (232) .++..+.+++.|+.+ +| -.....+.+..+ +++.+.++.+.+.-..++ ...+.....+.. .-+..+..+ T Consensus 39 d~~~~~~~~~~g~~~----i~---GD~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~l~p~~~iiar~~~~~~~ 111 (140) T 3fwz_A 39 SRTRVDELRERGVRA----VL---GNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEV 111 (140) T ss_dssp CHHHHHHHHHTTCEE----EE---SCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHH T ss_pred CCHHHHHHHHCCCEE----EE---CCCCCHHHHHHHCHHHHCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH T ss_conf 807750156539658----85---15899999997274451899998798899999999999978998499998799999 Q ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 999976996699879999889999986 Q gi|255764510|r 203 SAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 203 ~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) +.+++.|...++.+..-.-..|.+.|. T Consensus 112 ~~l~~~G~~~vi~~~~~~a~~l~~~l~ 138 (140) T 3fwz_A 112 AYITERGANQVVMGEREIARTMLELLE 138 (140) T ss_dssp HHHHHTTCSEEEEHHHHHHHHHHHHHH T ss_pred HHHHHCCCCEEECHHHHHHHHHHHHHC T ss_conf 999977989999889999999999744 No 67 >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} Probab=57.98 E-value=8.1 Score=16.89 Aligned_cols=178 Identities=11% Similarity=0.037 Sum_probs=88.8 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC----CCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHC Q ss_conf 99999998798299942100000785----20016447587999848467-99988620013630004158999976410 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE----SVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKG 88 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~----~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~ 88 (232) .+...+++.|+..+.+..-.-..... .+....-...|++|+.+... -..+......+.|+..++.... ... T Consensus 29 gi~~~~~~~g~~~~i~~~~~~~~~~e~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~i~~~~~----~~~ 104 (290) T 2rgy_A 29 QTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDELHRMHPKMVFLNRAFD----ALP 104 (290) T ss_dssp HHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSEEEESSCCT----TSG T ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCC----CCC T ss_conf 9999999869989999688986309999999999984899889996565897999999964997899906778----886 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHH Q ss_conf 122354445456789998642201277753897215675620-------146898469825676887504689998-899 Q gi|255764510|r 89 FTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTM 160 (232) Q Consensus 89 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~ 160 (232) ...+. .+.......+.+.... .+.+++.++.|...... +.+.+.++|..+....++......... ... T Consensus 105 ~~~V~---~D~~~~~~~a~~~L~~-~G~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (290) T 2rgy_A 105 DASFC---PDHRRGGELAAATLIE-HGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAAT 180 (290) T ss_dssp GGEEC---CCHHHHHHHHHHHHHH-TTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHH T ss_pred CCEEE---ECHHHHHHHHHHHHHH-HCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHH T ss_conf 87898---5669999999999998-3985162177873222067777788888997099865022014688889999999 Q ss_pred HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 9862---37838998078999999971354405----803997188 Q gi|255764510|r 161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) ..++ .++++|+.+|...+..+.+.+...+. ++.+++++. T Consensus 181 ~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~dv~vig~d~ 226 (290) T 2rgy_A 181 CQLLESKAPFTGLFCANDTMAVSALARFQQLGISVPGDVSVIGYDD 226 (290) T ss_dssp HHHHHHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC T ss_pred HHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECC T ss_conf 7520025676338853738888899999986998999618999798 No 68 >3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} Probab=56.30 E-value=8.6 Score=16.73 Aligned_cols=57 Identities=7% Similarity=-0.052 Sum_probs=29.0 Q ss_pred EEEEEC--CHHH----HHHHHHHHHHCCCCEEEECCEEEECCCC-CC--CCCCCCCCCEEEEECHH Q ss_conf 389858--9688----6999999998798299942100000785-20--01644758799984846 Q gi|255764510|r 2 YIVITR--PIKK----ALRTQEKIQKMGYIPVMMPLSYFIHDRE-SV--FLAMQQSYGAIAITSSE 58 (232) Q Consensus 2 ~ilitR--p~~~----a~~~~~~L~~~G~~~i~~Pli~i~~~~~-~~--~~~~~~~~d~iiftS~~ 58 (232) ||||.- |.+. +..+++.+++.|.++...=|-...+.+. ++ ....+...|.|||-+|- T Consensus 3 KiLvi~ahP~~~~s~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~dv~~~~~~l~~AD~iV~~~P~ 68 (192) T 3f2v_A 3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPI 68 (192) T ss_dssp CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEEC T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEECCH T ss_conf 599998089923579999999999955996399986101589821099999999858999997665 No 69 >2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.25A {Salmonella typhimurium LT2} SCOP: c.23.16.9 Probab=56.15 E-value=7.7 Score=17.03 Aligned_cols=46 Identities=20% Similarity=0.083 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC Q ss_conf 88699999999879829994210000078520016447587999848 Q gi|255764510|r 10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232) +.+..+...|...|+++.++|.-+.... .+.....+.+||.|||.- T Consensus 40 ~~~~~l~~al~~~~~~v~~~p~~~~~~~-fP~~~e~L~~yD~vIl~D 85 (256) T 2gk3_A 40 EGATWLLECLRKGGVDIDYMPAHTVQIA-FPESIDELNRYDVIVISD 85 (256) T ss_dssp ESCHHHHHHHHHTTCEEEEECHHHHHHC-CCCSHHHHHTCSEEEEES T ss_pred CCHHHHHHHHHHCCCEEEEECCHHHHHH-CCCCHHHHHHCCEEEECC T ss_conf 6058899766543935887142134454-763687783179999805 No 70 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Probab=55.63 E-value=8.9 Score=16.65 Aligned_cols=168 Identities=10% Similarity=-0.004 Sum_probs=80.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHC--CCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-----HHHHHHHHHCCCCCE Q ss_conf 9389858968869999999987--982999421000007852001644758799984846-----799988620013630 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKM--GYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-----SLSTLPANFCRHTPI 73 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~--G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-----av~~~~~~~~~~~~~ 73 (232) |||++.-..++...+.+.+.+. .+++...+- ... +.......++|+|+.-+.. ..+.+.....+-+.. T Consensus 2 ~KIl~~~~~~~~~~~~~~~~~~~~~~ev~~~~~----~~~-~e~~~~~~~~d~i~~~~~~~~~~~~l~~~~~~~Lk~I~~ 76 (333) T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK----LLT-PETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSL 76 (333) T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSS----CCC-TTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEE T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCC----CCC-HHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCEEEEE T ss_conf 779998358324899999997689979998999----999-899998389988999368988999998544079669998 Q ss_pred ECCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH------------------HH-HH------CCCCCCEEEEECCCC Q ss_conf 004158--9999764101223544454567899986------------------42-20------127775389721567 Q gi|255764510|r 74 FAIGEA--SACLARQKGFTQIFHGKDNSINLAKIIV------------------EQ-KV------LFTPQKPLIYLGGKP 126 (232) Q Consensus 74 ~~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~------------------~~-~~------~~~~~~~vl~~~g~~ 126 (232) ..+|-. -..++.+.|......+...+...++... +. +. ....++.+.++.-.. T Consensus 77 ~~~G~d~iD~~~~~~~gI~v~n~~~~~~~~vAE~~~~~il~~~R~~~~~~~~~~~~~~~~~~~~g~~l~gk~vgIiG~G~ 156 (333) T 1j4a_A 77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGH 156 (333) T ss_dssp SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSH T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCC T ss_conf 87624631499998789589978987868999999999999865425899999827876478775240288899992465 Q ss_pred CCCCHHHHHHHCCCEEEEEEEEEECCCCC------CHHHHHHHHCCCCEEEEECHH Q ss_conf 56201468984698256768875046899------988999862378389980789 Q gi|255764510|r 127 RNFHFEDYLIEHKIPLRVIDCYYSQDIAY------PETTMKNLLQNADAILFYARS 176 (232) Q Consensus 127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~~~------~~~~~~~~~~~~d~i~f~S~~ 176 (232) ....+.+.|...|.+|.. |...+.+. ....+.+++++.|+|++.=|. T Consensus 157 IG~~va~~l~~fg~~V~~---~d~~~~~~~~~~~~~~~~l~~ll~~aDiv~~~lPl 209 (333) T 1j4a_A 157 IGQVFMQIMEGFGAKVIT---YDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPD 209 (333) T ss_dssp HHHHHHHHHHHTTCEEEE---ECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCC T ss_pred CCHHHHHHHCCCCCCEEE---ECCCCCCCHHCCCCCCCCHHHHHHHCCEEEEECCC T ss_conf 147488763366770110---07877710210560038799998649989991689 No 71 >1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 1g20_A* 1g21_A* 3k1a_A* 1fp4_A* 1qgu_A* 1qh1_A* 1qh8_A* 1h1l_A* Probab=55.02 E-value=9.1 Score=16.59 Aligned_cols=192 Identities=8% Similarity=-0.049 Sum_probs=100.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCCE----ECCCHHHHH Q ss_conf 6886999999998798299942100000785200164475879998484679998862001--3630----004158999 Q gi|255764510|r 9 IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR--HTPI----FAIGEASAC 82 (232) Q Consensus 9 ~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~~----~~vg~~t~~ 82 (232) ..+...+.++|++.|++++....-.. .-.++........-+..++.+..++...+.+ +.|+ +-....|.+ T Consensus 231 ~gd~~ei~~lL~~~Gi~v~~~~~g~~----t~eei~~~~~A~lniv~~~~~~~~~A~~Lee~~GiP~i~~~~~G~~~T~~ 306 (491) T 1m1n_A 231 GGDAWSSRILLEEMGLRCVAQWSGDG----SISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIE 306 (491) T ss_dssp TTTTHHHHHHHHHTTCEEEEEEETTC----CHHHHHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHH T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCC----CHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHH T ss_conf 55799999999975997599878999----89999861077399985778999999999997598633023587378999 Q ss_pred HHHHHCCCCCCCCCCCHHH-----HH---HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC Q ss_conf 9764101223544454567-----89---998642201277753897215675620146898469825676887504689 Q gi|255764510|r 83 LARQKGFTQIFHGKDNSIN-----LA---KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA 154 (232) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-----~~---~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 154 (232) .+++.............+. .. ..+. .......++++.+..|......+...|+..|..|.... |... T Consensus 307 ~Lr~ia~~~g~~~~~~~E~~Ia~e~~~~~~~l~-~~~~~L~GKrv~i~~g~~~~~~l~~~l~ElGmevv~~~-~~~~--- 381 (491) T 1m1n_A 307 SLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVA-KYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTG-YEFA--- 381 (491) T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEEE-ESSC--- T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE-ECCC--- T ss_conf 999999985872467899999999999999999-99998679718996786007999999998699799996-0678--- Q ss_pred CCHHHHHHHHC--CCCEEEEEC--HHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEE Q ss_conf 99889998623--783899807--89999999713544058039971889999999769966998 Q gi|255764510|r 155 YPETTMKNLLQ--NADAILFYA--RSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTV 215 (232) Q Consensus 155 ~~~~~~~~~~~--~~d~i~f~S--~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~v 215 (232) ..+....... +.+.+++.. ......+++...+ -++.-|.+-...+++.|..-+.+ T Consensus 382 -~~~d~~~~~~~~~~~~~iv~d~~~~el~~~i~~~kp-----DLiig~~~~k~~a~k~gIP~~~~ 440 (491) T 1m1n_A 382 -HNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKP-----DLIGSGIKEKFIFQKMGIPFREM 440 (491) T ss_dssp -CHHHHHTTTTTSCTTCEEEESCBHHHHHHHHHHHCC-----SEEEECHHHHHHHHHTTCCEEES T ss_pred -CHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCC-----CEEEECCCHHHHHHHCCCCEEEC T ss_conf -878999999867998689668999999999985499-----99997972289999839997107 No 72 >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Probab=53.72 E-value=9.5 Score=16.46 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=24.1 Q ss_pred CEEEEECC-HHHHHHHHHHHHHCCCCEEEE Q ss_conf 93898589-688699999999879829994 Q gi|255764510|r 1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=. ..-+..+++.|.+.|++++.+ T Consensus 1 MkIlV~GatG~iG~~lv~~L~~~G~~V~~~ 30 (224) T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAV 30 (224) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 969999989589999999999787989999 No 73 >3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A Probab=52.83 E-value=9.9 Score=16.38 Aligned_cols=198 Identities=12% Similarity=-0.013 Sum_probs=102.2 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC-CCC----EECCC Q ss_conf 8985896886999999998798299942100000785200164475879998484679998862001-363----00041 Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR-HTP----IFAIG 77 (232) Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~-~~~----~~~vg 77 (232) ++-..+..+...+..+|++.|+++...+- -....++........++..++..-........+ ..+ ..... T Consensus 188 i~G~~~~~d~~ei~rlL~~~GI~v~~~~p-----~~~~~~l~~~~~~~~~i~~~p~~~~~a~~le~r~g~p~~~~~PiG~ 262 (437) T 3aek_A 188 VVGALPDVVEDQCLSLLTQLGVGPVRMLP-----ARRSDIEPAVGPNTRFILAQPFLGETTGALERRGAKRIAAPFPFGE 262 (437) T ss_dssp EESCCCHHHHHHHHHHHHHTTCCCEEEES-----CSSGGGCCCBCTTCEEEESSTTCHHHHHHHHHTTCEECCCCCSCHH T ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEECC-----CCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 41467840699999999986997899838-----9878889744666578874688999999999846966437897756 Q ss_pred HHHHHHHHHHCCCCCCCCCCCH----HH---HHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH-CCCEEEEEEEEE Q ss_conf 5899997641012235444545----67---899986422012777538972156756201468984-698256768875 Q gi|255764510|r 78 EASACLARQKGFTQIFHGKDNS----IN---LAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIE-HKIPLRVIDCYY 149 (232) Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~----~~---~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~-~g~~v~~~~vY~ 149 (232) ..|.+.+++............. +. ....+.. ......++++.+..+....-.+...|.+ .|..|..+-.+. T Consensus 263 egT~~wL~~Ia~~~Gi~~e~ve~~i~~e~~r~~~aL~~-~~~~L~GKrv~i~~d~~l~~~larfL~~elGmevv~vgt~~ 341 (437) T 3aek_A 263 EGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKAIAA-HLETLTGKSLFMFPDSQLEIPLARFLARECGMKTTEIATPF 341 (437) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-THHHHTTCEEEECSSSSCHHHHHHHHHHTTCCEEEEEEESC T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 99999999999884887455888876578899999999-99870799899828951789999999986397777873556 Q ss_pred ECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCE Q ss_conf 046899988999862378389980789999999713544058039971889999999769966 Q gi|255764510|r 150 SQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNV 212 (232) Q Consensus 150 ~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~ 212 (232) ... ........++.. +..+... ..+...++.+...+.+ ++.-|...|..+++.|+.. T Consensus 342 ~~~--~~~~~e~~~L~~-~~~I~e~-~d~~~~l~~i~~~~PD--LvI~g~~~a~pl~~~g~~~ 398 (437) T 3aek_A 342 LHK--AIMAPDLALLPS-NTALTEG-QDLEAQLDRHEAINPD--LTVCGLGLANPLEAKGHAT 398 (437) T ss_dssp CCH--HHHHHHHTTSBT-TCEEEEE-CCHHHHHHHHHHHCCS--EEEECHHHHHHHHTTTCCE T ss_pred CCH--HHHHHHHHHCCC-CCEEEEC-CCHHHHHHHHHHHCCC--EEECCCCCCCHHHHCCCCE T ss_conf 887--889999974689-9889848-9989999999960989--9976643466275549740 No 74 >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Probab=51.23 E-value=9.7 Score=16.41 Aligned_cols=50 Identities=16% Similarity=-0.023 Sum_probs=31.4 Q ss_pred CEEEEECCHH----HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 9389858968----86999999998798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRPIK----KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp~~----~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) |+|+.--... -+..+++.+++.|.++...++.+.. ..++.++|.|+|-|+ T Consensus 1 i~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~-------~~~~~~~d~iv~g~p 54 (138) T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN-------IDELLNEDILILGCS 54 (138) T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC-------HHHHTTCSEEEEEEC T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-------HHHHCCCCEEEEEEC T ss_conf 999999988079999999999876459737999830066-------325454998999973 No 75 >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Probab=51.21 E-value=10 Score=16.22 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=23.4 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=-.. -+..+++.|.+.|+++..+ T Consensus 1 MkIlV~GatG~iG~~l~~~L~~~G~~V~~~ 30 (221) T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAI 30 (221) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 949999988189999999999786989999 No 76 >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} Probab=50.90 E-value=11 Score=16.19 Aligned_cols=177 Identities=11% Similarity=0.071 Sum_probs=85.8 Q ss_pred HHHHHHHHCCCCEEEECCEEE-ECCCCCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf 999999987982999421000-007852001644758799984846--79998862001363000415899997641012 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYF-IHDRESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i-~~~~~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) .+...+++.|++.+....-.- +..............|++|+.+.. .-...........++..++... ...... T Consensus 42 gi~~~~~~~g~~l~l~~~~~~~~~~~~~l~~~~~~~~dgiIi~~~~~~~~~~~~~~~~~~ipvV~~~~~~----~~~~~~ 117 (296) T 3brq_A 42 HAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRL----RKNSSH 117 (296) T ss_dssp HHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCC----SSSGGG T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECC----CCCCCC T ss_conf 9999999859999999689997999999999997098737752666775899999996499889996124----778898 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH Q ss_conf 2354445456789998642201277753897215675620-------14689846982567688750468999-889998 Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN 162 (232) Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~ 162 (232) .+. .+.......+..... ..+..++.++.|....+. +.+.+.+.|.......++........ ...... T Consensus 118 ~v~---~d~~~~~~~~~~~l~-~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (296) T 3brq_A 118 SVW---CDHKQTSFNAVAELI-NAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEM 193 (296) T ss_dssp EEC---CCHHHHHHHHHHHHH-HTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHH T ss_pred EEE---ECCHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH T ss_conf 899---673677888899987-6324503999468777505778889999999859987610243155452207899999 Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC Q ss_conf 62---37838998078999999971354405----80399718 Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS 198 (232) Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig 198 (232) ++ .++++|+..|...+..+.+.+...+. ++.++++. T Consensus 194 ~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~di~vig~D 236 (296) T 3brq_A 194 LLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296) T ss_dssp HHTC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEES T ss_pred HHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCC T ss_conf 9856888745885685999999999997399898642010348 No 77 >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Probab=50.84 E-value=11 Score=16.19 Aligned_cols=102 Identities=11% Similarity=0.065 Sum_probs=48.8 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEE-------------EE-CCCCCCHHHHHHH-HCCCCEEEEECHHHH Q ss_conf 77753897215675620146898469825676887-------------50-4689998899986-237838998078999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCY-------------YS-QDIAYPETTMKNL-LQNADAILFYARSSV 178 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY-------------~~-~~~~~~~~~~~~~-~~~~d~i~f~S~~~v 178 (232) .+.++|+++.++.....+.+.|.+.|..|.-+.-= .. .......+.+..+ +++.+.++...+.-- T Consensus 17 ~~~~~IiI~G~g~~G~~ia~~L~~~g~~vvvId~d~~~~~~l~~~~~~~~i~GD~~d~~~L~~a~i~~a~~vI~~t~dDe 96 (155) T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS 96 (155) T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH T ss_pred HCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHHCCHHHCCEEEECCCCHH T ss_conf 15981999899899999999999789979999468898443120334136977760078887418224689999149849 Q ss_pred HH-HHHHC-CHHHCCEEE--EECCHHHHHHHHHCCCCEEEEC Q ss_conf 99-99713-544058039--9718899999997699669987 Q gi|255764510|r 179 LY-FFSLP-LPAKISAAF--LCLSNNIASAIPASYKNVVTVA 216 (232) Q Consensus 179 ~~-~~~~~-~~~~~~~~~--~~ig~~tA~~~~~~g~~~~~va 216 (232) .+ +..+. ........+ .+-.+...+.+++.|.. ++.+ T Consensus 97 ~Nl~~~l~ak~~~~~~~iIar~~~~~~~~~~~~~G~~-vI~p 137 (155) T 2g1u_A 97 TNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIK-TICP 137 (155) T ss_dssp HHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE-EECH T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-EECC T ss_conf 9999999999987998399998888899999977999-9861 No 78 >2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} Probab=50.02 E-value=4.5 Score=18.42 Aligned_cols=61 Identities=7% Similarity=-0.061 Sum_probs=42.5 Q ss_pred EEEECHHHHHHHHHHCCH---HHCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 998078999999971354---4058039971889999999769966998799998899999861 Q gi|255764510|r 170 ILFYARSSVLYFFSLPLP---AKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 170 i~f~S~~~v~~~~~~~~~---~~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) +-|.++++...|.++... .+....+..++|.+++.+...|.....+.-.+|.++=++.+++ T Consensus 53 v~~idssgl~~l~~~~~~~~~~g~~~~l~g~~p~v~~~l~~~g~d~~~~~~~~tl~~Al~~l~~ 116 (123) T 2vy9_A 53 LEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALNLQKGLDKLKN 116 (123) T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHTTCCSTTSEEESSHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHH T ss_conf 9745199999999999999976998999938999999999959986782566899999999986 No 79 >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Probab=48.01 E-value=12 Score=15.92 Aligned_cols=31 Identities=0% Similarity=-0.220 Sum_probs=17.2 Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCE Q ss_conf 3898589688699999999879829994210 Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLS 32 (232) Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli 32 (232) +||+..+...+.++...++.+|.+++.+|+- T Consensus 85 ~Vlv~~~g~f~~~~~~~a~~~G~~v~~i~~~ 115 (392) T 2z9v_A 85 VVLNLASGVYGKGFGYWAKRYSPHLLEIEVP 115 (392) T ss_dssp CEEEEESSHHHHHHHHHHHHHCSCEEEEECC T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 7999537617899999999719847995168 No 80 >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Probab=46.78 E-value=12 Score=15.80 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=24.2 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=... -+..+++.|.+.|++++.+ T Consensus 1 MKIlITGatGfIG~~lv~~L~~~g~~V~~~ 30 (311) T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVL 30 (311) T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 969998888879999999999786989999 No 81 >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Probab=46.28 E-value=13 Score=15.76 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.0 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=... =+..++..|.+.|++++.+ T Consensus 30 MKILVTGatGfIGs~Lv~~L~~~g~~Vi~~ 59 (379) T 2c5a_A 30 LKISITGAGGFIASHIARRLKHEGHYVIAS 59 (379) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 979998999889999999999783989999 No 82 >3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* Probab=45.99 E-value=13 Score=15.73 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=9.4 Q ss_pred CCCCCCEEEEECHH Q ss_conf 44758799984846 Q gi|255764510|r 45 MQQSYGAIAITSSE 58 (232) Q Consensus 45 ~~~~~d~iiftS~~ 58 (232) .+...|.|||.||- T Consensus 84 ~i~~AD~iV~~~Pi 97 (212) T 3keg_A 84 ELFDSDLLVISTPM 97 (212) T ss_dssp HHHTCSEEEEEEEC T ss_pred HHHHCCEEEEEECC T ss_conf 99858989998066 No 83 >1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Probab=43.56 E-value=13 Score=15.68 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=23.3 Q ss_pred EEEEE--CCHHHHHHH-HHHHHHCCCCEEEECCEE Q ss_conf 38985--896886999-999998798299942100 Q gi|255764510|r 2 YIVIT--RPIKKALRT-QEKIQKMGYIPVMMPLSY 33 (232) Q Consensus 2 ~ilit--Rp~~~a~~~-~~~L~~~G~~~i~~Pli~ 33 (232) +|+++ ||.-++.++ +..|.+.|+++...+--. T Consensus 6 ~V~v~EsRP~~eG~~ltA~~L~~~GI~vtli~Dsa 40 (191) T 1w2w_B 6 HVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSS 40 (191) T ss_dssp EEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGG T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHH T ss_conf 89990698313779999999998699879995338 No 84 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} Probab=42.90 E-value=14 Score=15.44 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=42.3 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC----CCHHHHHHHHCCCCEEEEECHHHHH Q ss_conf 77753897215675620146898469825676887504689----9988999862378389980789999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA----YPETTMKNLLQNADAILFYARSSVL 179 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~----~~~~~~~~~~~~~d~i~f~S~~~v~ 179 (232) ..++++.++........+.+.|+..|..|..+.-+...... .....+.+++.+.|+|++.-|.+-+ T Consensus 138 l~gktvgIiG~G~IG~~va~~l~~fg~~v~~~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~Plt~~ 207 (324) T 3hg7_A 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRE 207 (324) T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSS T ss_pred CCCCEEEEEEEEECCCHHHHCCCCCCCEEECCCCCCCCCHHHHCCCCCCCHHCCCCCCCCCEEECCCCCC T ss_conf 6588889996650550231024676755640323433210110132100010044456643120589842 No 85 >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} Probab=42.42 E-value=14 Score=15.39 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=12.8 Q ss_pred EEEEE----CCHHHHHHHHHHHHH---CCCCEEEE Q ss_conf 38985----896886999999998---79829994 Q gi|255764510|r 2 YIVIT----RPIKKALRTQEKIQK---MGYIPVMM 29 (232) Q Consensus 2 ~ilit----Rp~~~a~~~~~~L~~---~G~~~i~~ 29 (232) |||+. |+...+..+++.+.+ .|.++..+ T Consensus 4 KIl~i~GS~R~~s~t~~la~~~~~~l~~~~ev~~~ 38 (192) T 3fvw_A 4 RILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYL 38 (192) T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEEC T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 49999899999987999999999875799779998 No 86 >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} SCOP: c.2.1.2 Probab=41.98 E-value=13 Score=15.57 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=24.3 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 9389858968-86999999998798299942 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P 30 (232) ||||||=... =+..++..|.+.|++++.+- T Consensus 13 MKILItGatGfIG~~lv~~L~~~g~~V~~~~ 43 (292) T 1vl0_A 13 MKILITGANGQLGREIQKQLKGKNVEVIPTD 43 (292) T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEEC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 7589989998899999999986879899932 No 87 >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Probab=41.37 E-value=15 Score=15.30 Aligned_cols=30 Identities=10% Similarity=-0.060 Sum_probs=24.0 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 9389858968-86999999998798299942 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P 30 (232) ||||||=... =+..++..|.+.|++++.+= T Consensus 13 MKILVtGatGfIG~~l~~~Ll~~g~~V~~~~ 43 (321) T 2pk3_A 13 MRALITGVAGFVGKYLANHLTEQNVEVFGTS 43 (321) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 6799967888899999999998849899980 No 88 >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Probab=41.20 E-value=15 Score=15.28 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=50.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECC----EE---------EECC-CCCC---CCCCCCCCCEEEEECHHHHH-H Q ss_conf 9389858968869999999987982999421----00---------0007-8520---01644758799984846799-9 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPL----SY---------FIHD-RESV---FLAMQQSYGAIAITSSESLS-T 62 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pl----i~---------i~~~-~~~~---~~~~~~~~d~iiftS~~av~-~ 62 (232) |||+|.=-..-+..++..|.+.|++++..=- ++ +... ..+. ....+.+++.+|.+..+-.. . T Consensus 1 m~iiI~G~g~~g~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~i~gD~~~~~~L~~a~i~~a~~~ia~t~~D~~N~ 80 (218) T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL 80 (218) T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHH T ss_conf 98999998899999999999789989999999999999998526307854543268887664046654764158788889 Q ss_pred ---HHH-HHCCCCCEE--CCCHHHHHHHHHHCCCCCCCC Q ss_conf ---886-200136300--041589999764101223544 Q gi|255764510|r 63 ---LPA-NFCRHTPIF--AIGEASACLARQKGFTQIFHG 95 (232) Q Consensus 63 ---~~~-~~~~~~~~~--~vg~~t~~~~~~~~~~~~~~~ 95 (232) ... ......+++ +....-...+...+......+ T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~vi~~ 119 (218) T 3l4b_C 81 FIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNL 119 (218) T ss_dssp HHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCH T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCEEECH T ss_conf 999999998599749999624233444212455389888 No 89 >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Probab=41.01 E-value=15 Score=15.26 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=28.0 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 9999999987982999421000007852001644758799984846 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) ....+.+++.|+.++.+|..+.. .....+...|.|+||-.. T Consensus 31 ~~yv~~l~~aGa~pv~ip~~~~~-----~~~~~l~~~DGvll~GG~ 71 (254) T 3fij_A 31 QRYVDAIQKVGGFPIALPIDDPS-----TAVQAISLVDGLLLTGGQ 71 (254) T ss_dssp HHHHHHHHHHTCEEEEECCCCGG-----GHHHHHHTCSEEEECCCS T ss_pred HHHHHHHHHCCCEEEEECCCCHH-----HHHHHHHHCCEEEECCCC T ss_conf 99999999869989997589858-----899888656949965887 No 90 >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Probab=39.34 E-value=16 Score=15.10 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=82.1 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHH--HHHHHHCCCCCEECCCHHHHHHHHHHCC Q ss_conf 99999999879829994210000078-52001644758799984846799--9886200136300041589999764101 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLS--TLPANFCRHTPIFAIGEASACLARQKGF 89 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~--~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232) ......+++.|++++..+.-.-.... ...........|++|+.+..--. ..........++.+++..... ... T Consensus 27 ~gi~~~~~~~gy~~~l~~~~~~~~~e~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~----~~~ 102 (289) T 1dbq_A 27 EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAK----ADF 102 (289) T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCC----SSS T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCC----CCC T ss_conf 9999999986999999968999899999999998559886653100123258999985269978994366667----546 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHH Q ss_conf 223544454567899986422012777538972156756-------20146898469825676887504689998-8999 Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMK 161 (232) Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~ 161 (232) ..... ........+.... ....+.+++.++.+.... ..+.+.+..+|........+......... .... T Consensus 103 ~~v~~--~~~~~~~~~a~~~-~~~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (289) T 1dbq_A 103 TDAVI--DNAFEGGYMAGRY-LIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQ 179 (289) T ss_dssp CEEEE--ECHHHHHHHHHHH-HHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHH T ss_pred CEEEE--CCHHHHHHHHHHH-HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH T ss_conf 63995--1578889999999-98738863764378854305678887899999972899883079964665456999999 Q ss_pred HHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 862---37838998078999999971354405----803997188 Q gi|255764510|r 162 NLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) .++ ..+|+|+..+-..+..+...+...+. ++.+++++. T Consensus 180 ~ll~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~vP~di~Vig~d~ 224 (289) T 1dbq_A 180 QILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN 224 (289) T ss_dssp HHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEEC T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 998289998089988709988778999985256996089995687 No 91 >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Probab=39.27 E-value=13 Score=15.67 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=23.4 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEE--CC---------CC--CCCCCCCCCCCEEEEECHH Q ss_conf 699999999879829994210000--07---------85--2001644758799984846 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFI--HD---------RE--SVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~--~~---------~~--~~~~~~~~~~d~iiftS~~ 58 (232) ++..++-+++.|+++...-+-+.. +. .+ .....++.++|.|||-||- T Consensus 21 a~ai~~Ga~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~AD~IilgSP~ 80 (199) T 2zki_A 21 AKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPT 80 (199) T ss_dssp HHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEEC T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEEEECCC T ss_conf 999999887649889999766667088886336553478530679999858978996575 No 92 >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Probab=39.15 E-value=16 Score=15.09 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 86999999998798299942100000785200164475879998484 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) =+..+++.|++.|.++...++-+.. ..++.++|.|||-|+ T Consensus 16 iA~~ia~~l~~~g~~~~~~~~~~~~-------~~dl~~~d~ii~gsp 55 (137) T 2fz5_A 16 MANEIEAAVKAAGADVESVRFEDTN-------VDDVASKDVILLGCP 55 (137) T ss_dssp HHHHHHHHHHHTTCCEEEEETTSCC-------HHHHHTCSEEEEECC T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHH-------HHHHHHHHHEEEECC T ss_conf 9999999987568854122088988-------888886443067324 No 93 >3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Probab=38.73 E-value=16 Score=15.05 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=38.4 Q ss_pred CCCCEEEEECCCCCCCCHHHHHH---HCCCEEEEEEEEEECCCCCCH-HHH-HHHH-CCCCEEEEECHHHHHHHHHHCCH Q ss_conf 77753897215675620146898---469825676887504689998-899-9862-37838998078999999971354 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLI---EHKIPLRVIDCYYSQDIAYPE-TTM-KNLL-QNADAILFYARSSVLYFFSLPLP 187 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~---~~g~~v~~~~vY~~~~~~~~~-~~~-~~~~-~~~d~i~f~S~~~v~~~~~~~~~ 187 (232) ..+..|+-.|.. ......|+ +.|.. ..||-+...+... ..+ +.+. .++++.++. -+++..+++.+.. T Consensus 120 ~dg~~ILTh~~S---~tV~~~l~~A~~~gk~---f~V~v~EsrP~~~G~~la~~L~~~GI~vt~I~-Dsav~~~m~~vd~ 192 (315) T 3ecs_A 120 KDGATILTHAYS---RVVLRVLEAAVAAKKR---FSVYVTESQPDLSGKKMAKALCHLNVPVTVVL-DAAVGYIMEKADL 192 (315) T ss_dssp CTTEEEEECSCC---HHHHHHHHHHHTTTCC---EEEEEECCTTTTHHHHHHHHHHTTTCCEEEEC-GGGHHHHGGGCSE T ss_pred CCCCEEEEECCC---HHHHHHHHHHHHCCCE---EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-HHHHHHHHHCCCE T ss_conf 999999974880---9999999999986990---89999579986327999999997799879976-5799999750888 Q ss_pred HHC--------CEEEEECCHHH-HHHHHHCCCCEEEECC Q ss_conf 405--------80399718899-9999976996699879 Q gi|255764510|r 188 AKI--------SAAFLCLSNNI-ASAIPASYKNVVTVAC 217 (232) Q Consensus 188 ~~~--------~~~~~~ig~~t-A~~~~~~g~~~~~va~ 217 (232) --. .-.+--+|... |-.++..+.....+|+ T Consensus 193 VlvGAd~V~~nG~v~nkiGT~~iA~~Ak~~~vPvyV~ae 231 (315) T 3ecs_A 193 VIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAE 231 (315) T ss_dssp EEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECC T ss_pred EEEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCEEEECC T ss_conf 998201896388885564189999998763997698325 No 94 >1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2 Probab=37.73 E-value=17 Score=14.95 Aligned_cols=34 Identities=6% Similarity=-0.080 Sum_probs=24.0 Q ss_pred ECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 7188999999976996699879999889999986 Q gi|255764510|r 196 CLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 196 ~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) .||+.-...+.+.|++++.+.+.-+.+..++.|+ T Consensus 75 ~IG~~a~~~L~~~GI~~i~~~~g~~I~eaL~~L~ 108 (145) T 1p90_A 75 SIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQ 108 (145) T ss_dssp BCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH T ss_conf 4694799999988978998489980999999999 No 95 >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Probab=37.37 E-value=17 Score=14.92 Aligned_cols=29 Identities=21% Similarity=0.093 Sum_probs=23.6 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=-.. -+..++..|.+.|++++.+ T Consensus 21 MkILVTGgtGfiG~~lv~~Ll~~G~~V~~~ 50 (330) T 2pzm_A 21 MRILITGGAGCLGSNLIEHWLPQGHEILVI 50 (330) T ss_dssp CEEEEETTTSHHHHHHHHHHGGGTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 769998987789999999999786989999 No 96 >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Probab=37.31 E-value=17 Score=14.91 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=24.0 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=-.. -+..++..|.+.|++++.+ T Consensus 1 MkILItGatGfiG~~lv~~Ll~~g~~V~~~ 30 (338) T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30 (338) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 969998988789999999999784989999 No 97 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=37.18 E-value=17 Score=14.90 Aligned_cols=75 Identities=9% Similarity=-0.010 Sum_probs=38.1 Q ss_pred CHHHHHHH-HCCCCEEEEE--CHHHHHHHHHHCCHHHCCEEE--EECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 98899986-2378389980--789999999713544058039--971889999999769966998799998899999861 Q gi|255764510|r 156 PETTMKNL-LQNADAILFY--ARSSVLYFFSLPLPAKISAAF--LCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 156 ~~~~~~~~-~~~~d~i~f~--S~~~v~~~~~~~~~~~~~~~~--~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) .++.+..+ +++.+.++.+ +......+............+ .+-.+.-.+.+++.|...++.+....-+.|.+.|.. T Consensus 59 d~~~L~~a~i~~a~~vii~~~~d~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~Gad~Vv~p~~~~a~~l~~~l~~ 138 (144) T 2hmt_A 59 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSD 138 (144) T ss_dssp CHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHHH T ss_pred CHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCC T ss_conf 88888630223499999981886899999999998779985999994688899999779999998799999999999764 No 98 >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} Probab=37.06 E-value=17 Score=14.89 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=30.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC Q ss_conf 93898589688699999999879829994210000078520016447587999848 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232) |||-|.-=...-...++.|++.|+++.... ...++.++|.||+.- T Consensus 21 mkIgVi~~~Gn~~s~~~aL~~lG~~~~iv~-----------~~~~l~~~D~lILPG 65 (208) T 2iss_D 21 MKIGVLGVQGDVREHVEALHKLGVETLIVK-----------LPEQLDMVDGLILPG 65 (208) T ss_dssp CEEEEECSSSCHHHHHHHHHHTTCEEEEEC-----------SGGGGGGCSEEEECS T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECC T ss_conf 789999568879999999998899899989-----------989982599999999 No 99 >1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.124.1.5 Probab=36.91 E-value=18 Score=14.87 Aligned_cols=102 Identities=10% Similarity=-0.105 Sum_probs=42.2 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHHHC--- Q ss_conf 77538972156756201468984698256768875046899988999862-37838998078999999971354405--- Q gi|255764510|r 115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPAKI--- 190 (232) Q Consensus 115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~~~--- 190 (232) .+..|+-.|....--.+.....++|.... +.|=++.|.-.-.....++. .++++.++.- +++..++.....--. T Consensus 109 dg~~IlT~~~S~tv~~~l~~a~~~g~~~~-V~v~EsrP~~~G~~lA~eL~~~Gi~vtlI~D-~a~~~~m~~~d~VlvGAd 186 (276) T 1vb5_A 109 DGDVIITHSFSSTVLEIIRTAKERKKRFK-VILTESSPDYEGLHLARELEFSGIEFEVITD-AQMGLFCREASIAIVGAD 186 (276) T ss_dssp TTEEEECCSCCHHHHHHHHHHHHTTCCEE-EEEECCTTTTHHHHHHHHHHHTTCCEEEECG-GGHHHHHTTCSEEEECCS T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCHHHHHHHHHHCCCCEEEECH-HHHHHHHHHCCEEEEEEE T ss_conf 99989997980899999999998799579-9994489775409999999875998089647-899998530787998524 Q ss_pred -----CEEEEECCHHH-HHHHHHCCCCEEEECCC Q ss_conf -----80399718899-99999769966998799 Q gi|255764510|r 191 -----SAAFLCLSNNI-ASAIPASYKNVVTVACF 218 (232) Q Consensus 191 -----~~~~~~ig~~t-A~~~~~~g~~~~~va~~ 218 (232) ...+--+|... |-.++..|.....+++. T Consensus 187 ~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 220 (276) T 1vb5_A 187 MITKDGYVVNKAGTYLLALACHENAIPFYVAAET 220 (276) T ss_dssp EECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG T ss_pred EEECCCCEEEHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 8954898865230799999998569986997034 No 100 >3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} Probab=36.69 E-value=13 Score=15.73 Aligned_cols=56 Identities=9% Similarity=-0.137 Sum_probs=31.4 Q ss_pred CEEEEECCHHH-----HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 93898589688-----69999999987982999421000007852001644758799984846 Q gi|255764510|r 1 MYIVITRPIKK-----ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilitRp~~~-----a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) |||||.=-+|+ +.++...+.+.|.++...-+.....+ ......+..+|.|||.+|- T Consensus 1 MKvLII~aHP~~~~S~~~~~~~~~~~~~~~v~i~dL~~~~dv--~~e~~~l~~aD~iV~~~P~ 61 (177) T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVADFNV--EQEQSLLLQNDRIILEFPL 61 (177) T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCTTCCH--HHHHHHHHTCSEEEEEEEC T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHHHCCEEEEECCH T ss_conf 949999979890674999999999953894599744453479--9999999858989998682 No 101 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Probab=36.62 E-value=18 Score=14.84 Aligned_cols=157 Identities=13% Similarity=0.008 Sum_probs=72.5 Q ss_pred HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH--H-HHHHHHHCCCCCE--ECCCHH--HHHHHHHH Q ss_conf 999999879829994210000078520016447587999848467--9-9988620013630--004158--99997641 Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES--L-STLPANFCRHTPI--FAIGEA--SACLARQK 87 (232) Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a--v-~~~~~~~~~~~~~--~~vg~~--t~~~~~~~ 87 (232) +.+.|++.|++++..+=-+ .++......+.+.|.+|..+... + +-......+-.-+ ..+|-. -.+++.+. T Consensus 59 ~r~~le~~G~e~v~~~~~~---~~~~~~~~~l~Dad~vi~~~~~~~~i~~e~l~~ap~LK~I~~~g~G~D~IDl~aa~~~ 135 (393) T 2nac_A 59 LRKYLESNGHTLVVTSDKD---GPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDR 135 (393) T ss_dssp CHHHHHHTTCEEEEESCCS---STTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHT T ss_pred HHHHHHHCCCEEEEECCCC---CCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCEEEEECCEECCHHCHHHHHHC T ss_conf 6999997898899947998---8568998405776599854777774199999369998099989833132059889868 Q ss_pred CCCCCCCCCCCHHHHHHHHHHH---------------------------HHCCCCCCEEEEECCCCCCCCHHHHHHHCCC Q ss_conf 0122354445456789998642---------------------------2012777538972156756201468984698 Q gi|255764510|r 88 GFTQIFHGKDNSINLAKIIVEQ---------------------------KVLFTPQKPLIYLGGKPRNFHFEDYLIEHKI 140 (232) Q Consensus 88 ~~~~~~~~~~~~~~~~~ll~~~---------------------------~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~ 140 (232) |......+...+...+|...-. ......++.+.++........+.+.|...|. T Consensus 136 gI~V~n~~g~~~~sVAE~~i~liL~l~R~~~~~~~~~~~g~w~~~~~~~~~~~l~gk~vGIiG~G~IG~~va~~l~~fg~ 215 (393) T 2nac_A 136 NVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215 (393) T ss_dssp TCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTC T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCC T ss_conf 99999889848199999999999999863308899998089752335565421115379987672015689998521585 Q ss_pred EEEEEEEEEECCCCCCH---------HHHHHHHCCCCEEEEECHHH Q ss_conf 25676887504689998---------89998623783899807899 Q gi|255764510|r 141 PLRVIDCYYSQDIAYPE---------TTMKNLLQNADAILFYARSS 177 (232) Q Consensus 141 ~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~i~f~S~~~ 177 (232) .| ..|......... ..+.+++...|+|++.-|.. T Consensus 216 ~V---~~~d~~~~~~~~~~~~~~~~~~sl~ell~~sDvV~lh~PLt 258 (393) T 2nac_A 216 HL---HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLH 258 (393) T ss_dssp EE---EEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCC T ss_pred EE---EEEECCCCHHHHHHCCCCEEECCHHHHHHHCCEEEEECCCC T ss_conf 69---99714467355321023023146888764156355505787 No 102 >3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Probab=36.41 E-value=18 Score=14.82 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=83.8 Q ss_pred HHHHHHHHCCCCEEEECCEEEEC-CCCCCCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHCCCC Q ss_conf 99999998798299942100000-78520016447587999848467999886-20013630004158999976410122 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIH-DRESVFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKGFTQ 91 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~-~~~~~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~~~~ 91 (232) .+.+.+++.|++++.+..-.-.. .............|+||+.+......... ....+.|+..++.... ....... T Consensus 34 ~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~pvV~~~~~~~---~~~~~~~ 110 (292) T 3k4h_A 34 GISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYD---RKDEITY 110 (292) T ss_dssp HHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHTTCCEEEESCCSS---CTTTSCE T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC---CCCCCCE T ss_conf 9999999869999998289988999999999983798789997166885899999974999899756568---8888867 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHH-HHHH Q ss_conf 354445456789998642201277753897215675620-------14689846982567688750468999889-9986 Q gi|255764510|r 92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETT-MKNL 163 (232) Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~-~~~~ 163 (232) +. .+....+..+.+... ..+..++.++.+...... +...+...+.......+............ ...+ T Consensus 111 V~---~d~~~~~~~~~~~L~-~~g~~~i~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (292) T 3k4h_A 111 VD---NDNYTAAREVAEYLI-SLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEEL 186 (292) T ss_dssp EE---CCHHHHHHHHHHHHH-HTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHH T ss_pred EE---CCHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHH T ss_conf 81---289999999999999-81997089980687652288899999999997288887243102542114899999999 Q ss_pred H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf 2---37838998078999999971354405----8039971889 Q gi|255764510|r 164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) + ..+++|+..|-..+..+.+.+...+. ++.+++++.. T Consensus 187 l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~v~g~d~~ 230 (292) T 3k4h_A 187 MGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNA 230 (292) T ss_dssp HTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC T ss_pred HHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCH T ss_conf 95399982899737187899999999828988720331566867 No 103 >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* Probab=36.06 E-value=18 Score=14.79 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=23.9 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=... -+..++..|.+.|++++.+ T Consensus 1 MKILItGatGfiG~~l~~~L~~~g~~V~~~ 30 (312) T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVV 30 (312) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 969998888689999999999786989999 No 104 >1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Probab=35.71 E-value=18 Score=14.76 Aligned_cols=98 Identities=8% Similarity=0.007 Sum_probs=52.9 Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEE Q ss_conf 545678999864220127775389721567-----56201468984698256768875046899988999862-378389 Q gi|255764510|r 97 DNSINLAKIIVEQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAI 170 (232) Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i 170 (232) +........+..........+++.++..+. ....+.+.+.+.|+.+....-|... ..+....+..+. .++|+| T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~~~~~~~~~~~~~d~v 197 (346) T 1usg_A 119 GLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG-EKDFSALIARLKKENIDFV 197 (346) T ss_dssp CCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT-CCCCHHHHHHHHHTTCCEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCCHHHHHHHHHHCCCCEE T ss_conf 565156666778776413562268843786034556766631010579779999934887-6412589999985699999 Q ss_pred EEE-CHHHHHHHHHHCCHHHCCEEEE Q ss_conf 980-7899999997135440580399 Q gi|255764510|r 171 LFY-ARSSVLYFFSLPLPAKISAAFL 195 (232) Q Consensus 171 ~f~-S~~~v~~~~~~~~~~~~~~~~~ 195 (232) ++. ++.....|++.+...+....++ T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (346) T 1usg_A 198 YYGGYYPEMGQMLRQARSVGLKTQFM 223 (346) T ss_dssp EEESCHHHHHHHHHHHHHTTCCCEEE T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEE T ss_conf 99366289999999998639987478 No 105 >3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii} Probab=35.66 E-value=18 Score=14.75 Aligned_cols=141 Identities=15% Similarity=0.053 Sum_probs=79.1 Q ss_pred ECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCC Q ss_conf 00415899997641012235444545678999864220127775389721567562014689846982567688750468 Q gi|255764510|r 74 FAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDI 153 (232) Q Consensus 74 ~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~ 153 (232) .++|-++..++..+...... ....+..+++ ....+++|.++.. -+-+.+.|++ ++ .+.+.++.+. T Consensus 82 rslglAaiNAl~~~~~~~~~---~~~~d~~~~~-----~~~~~~kV~vVG~---~p~l~~~l~~-~~---~l~V~E~~p~ 146 (249) T 3npg_A 82 RTLGVAAINAVSQYYIDLRE---AKWIDVTELI-----QQDEIKRIAIIGN---MPPVVRTLKE-KY---EVYVFERNMK 146 (249) T ss_dssp HHHHHHHHHHHHHHHCCCTT---CBCCCHHHHH-----HTSCCSEEEEESC---CHHHHHHHTT-TS---EEEEECCSGG T ss_pred HHHHHHHHHHHHHCCCCCCC---CCCCCHHHHH-----CCCCCCEEEEECC---CHHHHHHHHC-CC---CEEEEECCCC T ss_conf 99999999854311245687---4445656530-----2268986999858---7689999853-49---8899978987 Q ss_pred C-----CCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCE-EEEECCHHHH---HHHHHCCCCEEEECCCCCHHHH Q ss_conf 9-----99889998623783899807899999997135440580-3997188999---9999769966998799998899 Q gi|255764510|r 154 A-----YPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISA-AFLCLSNNIA---SAIPASYKNVVTVACFPKETSL 224 (232) Q Consensus 154 ~-----~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~-~~~~ig~~tA---~~~~~~g~~~~~va~~p~~~~l 224 (232) . .........+.+.|+|++|.++-+..=++.+.....+. ..+-+||+|- +.+...|...+.=..-.|.+.+ T Consensus 147 ~~~~~~~p~~~~~~~Lp~aD~ViiTGsTlvN~Tl~~lL~~~~~a~~vvl~GPStp~~P~~l~~~Gv~~l~g~~v~d~~~~ 226 (249) T 3npg_A 147 LWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKA 226 (249) T ss_dssp GCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHH T ss_pred CCCCCCCCHHHHHHHHHHCCEEEEEEEEHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEEEECHHHH T ss_conf 78888688778798874099999986303317989999737568779998999644779996389867967787379999 Q ss_pred HHHHH Q ss_conf 99986 Q gi|255764510|r 225 LKLLP 229 (232) Q Consensus 225 l~al~ 229 (232) +++|+ T Consensus 227 ~~~i~ 231 (249) T 3npg_A 227 LVKLK 231 (249) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99997 No 106 >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Probab=35.48 E-value=19 Score=14.73 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.8 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=-.. =+..++..|.+.|.+++.+ T Consensus 3 MkILItGatGfIG~~l~~~L~~~g~~v~~~ 32 (311) T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIIL 32 (311) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 449998999789999999999786989999 No 107 >3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} Probab=35.34 E-value=19 Score=14.72 Aligned_cols=169 Identities=11% Similarity=0.142 Sum_probs=87.1 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC Q ss_conf 9999999879829994210000078520016447587999848467-999886200136300041589999764101223 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232) .+.+.+.++|++++.+.. ........-...|++|+.+... -..+........|+..++.... ..+...+ T Consensus 29 gi~~~~~~~g~~~~~~~~------~~~~~~l~~~~vdgiIl~~~~~~~~~~~~l~~~~iPvV~~~~~~~----~~~~~~V 98 (277) T 3cs3_A 29 GIKKGLALFDYEMIVCSG------KKSHLFIPEKMVDGAIILDWTFPTKEIEKFAERGHSIVVLDRTTE----HRNIRQV 98 (277) T ss_dssp HHHHHHHTTTCEEEEEES------TTTTTCCCTTTCSEEEEECTTSCHHHHHHHHHTTCEEEESSSCCC----STTEEEE T ss_pred HHHHHHHHCCCEEEEEEC------HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCEE T ss_conf 999999986998999808------587999996699989997277997999999974998999877557----8999889 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHH-HHHHH Q ss_conf 54445456789998642201277753897215675620-------14689846982567688750468999889-99862 Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETT-MKNLL 164 (232) Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~-~~~~~ 164 (232) . .+.......+...... .+..++.++.|...... +.+.+.+.|..+.. ++ .......... ...+. T Consensus 99 ~---~D~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 171 (277) T 3cs3_A 99 L---LDNRGGATQAIEQFVN-VGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEI--IQ-GDFTEPSGYAAAKKIL 171 (277) T ss_dssp E---ECHHHHHHHHHHHHHH-TTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEE--EE-CCSSHHHHHHHHHHHT T ss_pred E---ECCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEE--EC-CCCCCCHHHHHHHHHH T ss_conf 9---7758999999999997-39814888517876522888878899999983997202--10-2222004899999986 Q ss_pred ----CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf ----37838998078999999971354405----803997188 Q gi|255764510|r 165 ----QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 165 ----~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) .++++|+-++-..+..+.+.+...+. ++.+++++. T Consensus 172 ~~~~~~~~ai~~~~d~~A~gv~~~l~~~g~~vP~dv~vig~d~ 214 (277) T 3cs3_A 172 SQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDN 214 (277) T ss_dssp TSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSC T ss_pred HCCCCCCEEEEECCHHHHHCHHHHHHHCCCCCCCCEEEEEECC T ss_conf 3367887078717878863558999974998898438999888 No 108 >1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 Probab=34.96 E-value=19 Score=14.68 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=29.1 Q ss_pred CEEEEE----CCHHHHHHH----HHHHHHC------CCCEEEECCEE-------EECC-------------CCCC--CCC Q ss_conf 938985----896886999----9999987------98299942100-------0007-------------8520--016 Q gi|255764510|r 1 MYIVIT----RPIKKALRT----QEKIQKM------GYIPVMMPLSY-------FIHD-------------RESV--FLA 44 (232) Q Consensus 1 M~ilit----Rp~~~a~~~----~~~L~~~------G~~~i~~Pli~-------i~~~-------------~~~~--~~~ 44 (232) |||++. |+...+.++ .+.+++. |.++-.+-+-+ -... ++.. ... T Consensus 1 MkI~vI~GS~R~~s~s~~la~~~~~~~~~~~~~~~~g~ev~~idl~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191) T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191) T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 98999978999887349999999999998663168995799997001588865531113555455344458599999999 Q ss_pred CCCCCCEEEEECHH Q ss_conf 44758799984846 Q gi|255764510|r 45 MQQSYGAIAITSSE 58 (232) Q Consensus 45 ~~~~~d~iiftS~~ 58 (232) .+..+|.+||.||. T Consensus 81 ~l~~AD~iv~~tP~ 94 (191) T 1t0i_A 81 IVNALDIIVFVTPQ 94 (191) T ss_dssp HHHTCSEEEEEEEC T ss_pred HHHHCCCCEEECCC T ss_conf 99848887896754 No 109 >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Probab=34.54 E-value=19 Score=14.64 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=27.4 Q ss_pred CCCCEEE-EECHHHHHHHHHHCCHHHCCEEEE---ECCHHHHHHHHHCCCCEE Q ss_conf 3783899-807899999997135440580399---718899999997699669 Q gi|255764510|r 165 QNADAIL-FYARSSVLYFFSLPLPAKISAAFL---CLSNNIASAIPASYKNVV 213 (232) Q Consensus 165 ~~~d~i~-f~S~~~v~~~~~~~~~~~~~~~~~---~ig~~tA~~~~~~g~~~~ 213 (232) ..+|.++ |..+..+...++.+...+....++ ...+...+.+++.|++.+ T Consensus 69 ~~vDlv~i~vp~~~v~~~v~e~~~~g~~~v~~q~G~~~~e~~~~a~~~Gi~vI 121 (140) T 1iuk_A 69 EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGIRHPEFEKALKEAGIPVV 121 (140) T ss_dssp SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHHHHHTTCCEE T ss_pred CCCCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEE T ss_conf 98738999808899999999999629898998989689999999999599799 No 110 >1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 Probab=33.18 E-value=20 Score=14.51 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=57.1 Q ss_pred CCEEEE-ECCCCCCCC----HHHHHHHCC-CEEEEEEEEEECCC--CCCHHHHHHHH--CCCCEEEEECH-----H---H Q ss_conf 753897-215675620----146898469-82567688750468--99988999862--37838998078-----9---9 Q gi|255764510|r 116 QKPLIY-LGGKPRNFH----FEDYLIEHK-IPLRVIDCYYSQDI--AYPETTMKNLL--QNADAILFYAR-----S---S 177 (232) Q Consensus 116 ~~~vl~-~~g~~~~~~----l~~~L~~~g-~~v~~~~vY~~~~~--~~~~~~~~~~~--~~~d~i~f~S~-----~---~ 177 (232) ..+|+. --|.+..+. +...+...| +-+++...|+...+ ..+++.+.... .++|+|.++|- . . T Consensus 120 ~~~vv~a~~g~D~H~~G~~~v~~~~~~aG~~~~e~~~~feVi~LG~~vp~ee~v~~a~e~~aD~VgvS~llt~~~~h~~~ 199 (262) T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQN 199 (262) T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHH T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH T ss_conf 86799984086444778999999998758643002684499968889999999999986499999997521552337899 Q ss_pred HHHHHHHCCHHHC--CEEEEECCHHH-HHHHHHCCCCEEEECCCCCHHH----HHHHHHHC Q ss_conf 9999971354405--80399718899-9999976996699879999889----99998614 Q gi|255764510|r 178 VLYFFSLPLPAKI--SAAFLCLSNNI-ASAIPASYKNVVTVACFPKETS----LLKLLPLR 231 (232) Q Consensus 178 v~~~~~~~~~~~~--~~~~~~ig~~t-A~~~~~~g~~~~~va~~p~~~~----ll~al~~~ 231 (232) +..+.+.+...+. ++.++|-|+.+ .+.+++.|...+.- +....+. +.+.+.+| T Consensus 200 ~~~li~~l~e~gl~~~v~vivGG~~~~~~~a~~lGaDavfg-~gt~~~dva~~l~~~l~~r 259 (262) T 1xrs_B 200 MTHLIELLEAEGLRDRFVLLCGGPRINNEIAKELGYDAGFG-PGRFADDVATFAVKTLNDR 259 (262) T ss_dssp HHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTTTCSEEEC-TTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCEECC-CCCCHHHHHHHHHHHHHHH T ss_conf 99999999966998895899989989999999779988769-9988999999999999987 No 111 >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Probab=31.46 E-value=22 Score=14.33 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=15.2 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEE Q ss_conf 9389858968869999999987982999 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVM 28 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~ 28 (232) |||+|.=-..-+..+++.|.+.|++++. T Consensus 5 m~ViI~G~G~~G~~la~~L~~~g~~v~v 32 (140) T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVL 32 (140) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEE T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEE T ss_conf 9999999899999999999977995899 No 112 >1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Probab=30.91 E-value=22 Score=14.28 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=4.9 Q ss_pred HHHHHHHHCCCCEE Q ss_conf 88999862378389 Q gi|255764510|r 157 ETTMKNLLQNADAI 170 (232) Q Consensus 157 ~~~~~~~~~~~d~i 170 (232) +..+...+..+.+| T Consensus 190 p~~l~~~L~~ipGV 203 (229) T 1lk5_A 190 PLDMEIELNTIPGV 203 (229) T ss_dssp HHHHHHHHHTSTTE T ss_pred HHHHHHHHHCCCCE T ss_conf 99999998789869 No 113 >3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str} Probab=30.81 E-value=22 Score=14.27 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=18.1 Q ss_pred CCCCEEEEECHHHHHHHHHHHC----CCCC--EECCCHHHHHHHHHHCC Q ss_conf 7587999848467999886200----1363--00041589999764101 Q gi|255764510|r 47 QSYGAIAITSSESLSTLPANFC----RHTP--IFAIGEASACLARQKGF 89 (232) Q Consensus 47 ~~~d~iiftS~~av~~~~~~~~----~~~~--~~~vg~~t~~~~~~~~~ 89 (232) .+-+.|.+-|...+.++...+. ...+ ....+..|...+...|. T Consensus 40 ~dG~~IGLGsGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~~~~~Gi 88 (255) T 3hhe_A 40 EDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGV 88 (255) T ss_dssp CTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTC T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC T ss_conf 8998999787269999999999998636745998578899999997698 No 114 >1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1 Probab=30.46 E-value=22 Score=14.23 Aligned_cols=88 Identities=7% Similarity=0.027 Sum_probs=54.2 Q ss_pred CCCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEE----CCCCCCHHHHHHHHCCC-CEEEEECHHHHHHHHHHCCH Q ss_conf 777538972156-7562014689846982567688750----46899988999862378-38998078999999971354 Q gi|255764510|r 114 TPQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYS----QDIAYPETTMKNLLQNA-DAILFYARSSVLYFFSLPLP 187 (232) Q Consensus 114 ~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~----~~~~~~~~~~~~~~~~~-d~i~f~S~~~v~~~~~~~~~ 187 (232) ...+.|--|+.. +-.+++.+.|+++|+.+..+..--- .|+. +.+.. .++ .-...-|..+++.+-+.-.. T Consensus 175 k~~GSVAAPTAGLHFt~~ll~~l~~kgi~~~~iTLHVG~GTF~PV~---~~i~~--H~mH~E~~~I~~~t~~~I~~ak~~ 249 (345) T 1wdi_A 175 RRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK---GDPEK--HEMHAEPYAIPEEVAEAVNRAKAE 249 (345) T ss_dssp ------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------------CCCEEEEECHHHHHHHHHHHHT T ss_pred CCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCC---CCCCC--CCCCCEEEEECHHHHHHHHHHHHC T ss_conf 6898550676878779999999998698089999963677504544---54346--787653899669999999999974 Q ss_pred HHCCEEEEECCHHHHHHHHHCC Q ss_conf 4058039971889999999769 Q gi|255764510|r 188 AKISAAFLCLSNNIASAIPASY 209 (232) Q Consensus 188 ~~~~~~~~~ig~~tA~~~~~~g 209 (232) .-+++|+|-++..+++... T Consensus 250 ---g~rIiAVGTT~~RaLEs~~ 268 (345) T 1wdi_A 250 ---GRRVVAVGTTVVRALESAY 268 (345) T ss_dssp ---TCCEEEESHHHHHHHHHTE T ss_pred ---CCCEEEEECCHHHHHHHHH T ss_conf ---9929999240899999999 No 115 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=30.38 E-value=23 Score=14.22 Aligned_cols=27 Identities=7% Similarity=-0.089 Sum_probs=12.2 Q ss_pred CEEEEECCC-CCCCCHHHHHHHCCCEEE Q ss_conf 538972156-756201468984698256 Q gi|255764510|r 117 KPLIYLGGK-PRNFHFEDYLIEHKIPLR 143 (232) Q Consensus 117 ~~vl~~~g~-~~~~~l~~~L~~~g~~v~ 143 (232) -+|++.--+ ..+..+.+.|+..|+.|. T Consensus 19 mrILvVEDd~~~~~~l~~~L~~~G~~v~ 46 (137) T 2pln_A 19 MRVLLIEKNSVLGGEIEKGLNVKGFMAD 46 (137) T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEE T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEE T ss_conf 8899995999999999999998899999 No 116 >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Probab=29.88 E-value=23 Score=14.17 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=56.1 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC--------CCHHHHHHHCCCEEEEEEEEEECCCCCCHH--HHHHHH---CCC Q ss_conf 7899986422012777538972156756--------201468984698256768875046899988--999862---378 Q gi|255764510|r 101 NLAKIIVEQKVLFTPQKPLIYLGGKPRN--------FHFEDYLIEHKIPLRVIDCYYSQDIAYPET--TMKNLL---QNA 167 (232) Q Consensus 101 ~~~~ll~~~~~~~~~~~~vl~~~g~~~~--------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~--~~~~~~---~~~ 167 (232) ....++.+... ..+..++.++.+.... .-+.+.+.++|........+.......... ....++ ..+ T Consensus 173 ~~~~~a~~~L~-~~G~r~i~~l~~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (355) T 3e3m_A 173 RAAYDMTNALL-ARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDT 251 (355) T ss_dssp HHHHHHHHHHH-HTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTC T ss_pred HHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999-76996299995788777409999871699999859994210022445302344566655687538999 Q ss_pred CEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH Q ss_conf 38998078999999971354405----8039971889 Q gi|255764510|r 168 DAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 168 d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~ 200 (232) ++|+.+|...+..++..+...+. ++.+++++.. T Consensus 252 ~ai~~~~d~~A~g~~~~l~~~g~~vP~disVig~D~~ 288 (355) T 3e3m_A 252 DCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGNF 288 (355) T ss_dssp CEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSSCC T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC T ss_conf 7688567799999999999859999984399997784 No 117 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Probab=29.65 E-value=23 Score=14.15 Aligned_cols=110 Identities=8% Similarity=0.066 Sum_probs=62.0 Q ss_pred CCCCCEEEEE--CCCCCC----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHH Q ss_conf 2777538972--156756----201468984698256768875046899988999862378389980789-------999 Q gi|255764510|r 113 FTPQKPLIYL--GGKPRN----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVL 179 (232) Q Consensus 113 ~~~~~~vl~~--~g~~~~----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~ 179 (232) ..+.++++++ +..+.. +.+.+.|...|..|+. |.-.. .....+..-+.+.|+|+|.||. .+. T Consensus 249 ~~~~~kv~i~Y~S~~GnT~~~a~~ia~~l~~~g~~v~~---~~~~~--~~~~~~~~~~~~~d~ii~gspt~~~~~~~~~~ 323 (402) T 1e5d_A 249 QKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKL---MWCKA--CHHSQIMSEISDAGAVIVGSPTHNNGILPYVA 323 (402) T ss_dssp CCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEE---EETTT--SCHHHHHHHHHTCSEEEEECCCBTTBCCHHHH T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE---EECCC--CCHHHHHHHHHHCCEEEEEECCCCCCCCHHHH T ss_conf 25567447999389875999999999888655965999---98566--87577788897589699970475886439999 Q ss_pred HHHHHCCHHHC-CEEEEECC---------HHHHHHHHHCCCC----EEEECCCCCHHHHHHH Q ss_conf 99971354405-80399718---------8999999976996----6998799998899999 Q gi|255764510|r 180 YFFSLPLPAKI-SAAFLCLS---------NNIASAIPASYKN----VVTVACFPKETSLLKL 227 (232) Q Consensus 180 ~~~~~~~~~~~-~~~~~~ig---------~~tA~~~~~~g~~----~~~va~~p~~~~ll~a 227 (232) .|++.+..... +..++++| ....+.+++.|++ .+.+.-.|+++.+-++ T Consensus 324 ~~l~~~~~~~~~~k~~~~Fgs~g~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~ 385 (402) T 1e5d_A 324 GTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQL 385 (402) T ss_dssp HHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHH T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHHH T ss_conf 99999854665899899998489883899999999997799895785799617998999999 No 118 >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Probab=28.59 E-value=24 Score=14.04 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=23.5 Q ss_pred CEEEEECC-HHHHHHHHHHHHHCCCCEEEE Q ss_conf 93898589-688699999999879829994 Q gi|255764510|r 1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=- ..-+..++..|.+.|+++..+ T Consensus 1 MkVlVtGatG~iG~~lv~~Ll~~g~~V~~~ 30 (219) T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219) T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 939999999989999999999783989999 No 119 >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Probab=28.20 E-value=25 Score=13.99 Aligned_cols=100 Identities=6% Similarity=-0.104 Sum_probs=67.8 Q ss_pred CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHH-----HHHHHHHHCCHHHC-CEEEEECC Q ss_conf 756201468984698256768875046899988999862-378389980789-----99999971354405-80399718 Q gi|255764510|r 126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARS-----SVLYFFSLPLPAKI-SAAFLCLS 198 (232) Q Consensus 126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~-----~v~~~~~~~~~~~~-~~~~~~ig 198 (232) .++.++...+...|+.|..-..|.+. .+....+. ++.++|++.|.. .+..+.+.+...+. ++.+++-| T Consensus 611 ~~ra~fA~~f~~~Gf~V~~~~~f~tp-----ee~a~aa~es~a~vv~ics~d~~y~~~vp~l~~~Lk~ag~~~i~VilgG 685 (727) T 1req_A 611 RGQKVIATAYADLGFDVDVGPLFQTP-----EETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGG 685 (727) T ss_dssp HHHHHHHHHHHHHTCEEEECCTTBCH-----HHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEE T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCH-----HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 35999999998589617548888999-----9999999976999999917874558899999999996799885799807 Q ss_pred ---HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf ---89999999769966998799998899999861 Q gi|255764510|r 199 ---NNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 199 ---~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) +.-.+.+++.|...++-+.++-.+++.+.|.+ T Consensus 686 ~iP~~d~~~L~~aGV~~if~pgtni~~~~~~~l~~ 720 (727) T 1req_A 686 VIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKK 720 (727) T ss_dssp SCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHH T ss_conf 78878799999779886848998099999999999 No 120 >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* Probab=27.74 E-value=25 Score=13.95 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=21.1 Q ss_pred CEEEEEC----CH------HHHHHHHHHHHHCCCCEEEE Q ss_conf 9389858----96------88699999999879829994 Q gi|255764510|r 1 MYIVITR----PI------KKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitR----p~------~~a~~~~~~L~~~G~~~i~~ 29 (232) ||||+.= |. .....++..|.++|++|..+ T Consensus 3 MkIl~~~~~~~P~~~GG~~~~~~~La~~L~~~Gh~V~vv 41 (439) T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVF 41 (439) T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEE T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 099998886798567879999999999999769989999 No 121 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Probab=27.37 E-value=25 Score=13.91 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=40.7 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHH Q ss_conf 7775389721567562014689846982567688750468999889998623783899807899 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~ 177 (232) ..++++.++........+.+.|+..|.+|..+.-|...........+.+++.+.|+|++.-|.+ T Consensus 122 l~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~l~~ll~~sDvv~~~~Plt 185 (303) T 1qp8_A 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN 185 (303) T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEECCCCC T ss_conf 5899999990389999999988735977997448842233323387999972579998616797 No 122 >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Probab=27.21 E-value=26 Score=13.89 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.4 Q ss_pred CEEEEECC-HHHHHHHHHHHHHCCCCEEEE Q ss_conf 93898589-688699999999879829994 Q gi|255764510|r 1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=- ..-+..+++.|.+.|+++..+ T Consensus 22 MkIlI~GasG~iG~~lv~~Ll~~g~~V~~l 51 (236) T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 908999998889999999999785989999 No 123 >3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} Probab=26.76 E-value=26 Score=13.84 Aligned_cols=171 Identities=9% Similarity=0.050 Sum_probs=83.7 Q ss_pred HHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC Q ss_conf 999999987982999421000007-8520016447587999848467999886200136300041589999764101223 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQI 92 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232) .+...+.++|+.++.++.-.-... ............|++|+.+.+.-...........++..++..... ...+ T Consensus 29 ~i~~~a~~~g~~~~~~~~~~~~~~e~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~ipvv~~~~~~~~------~~~V 102 (277) T 3e61_A 29 GVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFIDRINNE------HNGI 102 (277) T ss_dssp HHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC------------ T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCC------CCEE T ss_conf 9999999849999999789998999999999986598299952531057999999759988997304799------9979 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH- Q ss_conf 54445456789998642201277753897215675620-------1468984698256768875046899988999862- Q gi|255764510|r 93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL- 164 (232) Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~- 164 (232) . .+......+..+... .....++.++.+....+. +.+.+.+.+........ .. .........++ T Consensus 103 ~---~d~~~~~~~a~~~l~-~~~~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~ 174 (277) T 3e61_A 103 S---TNHFKGGQLQAEVVR-KGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKMLEA--TL--LDNDKKFIDLIK 174 (277) T ss_dssp ------HHHHHHHHHHHHH-HTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEEEEG--GG--GGSHHHHHHHHH T ss_pred E---ECHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE--CC--HHHHHHHHHHHH T ss_conf 9---768999999999998-489836999247666522677789999999973997303430--21--148999999986 Q ss_pred -CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC Q ss_conf -37838998078999999971354405----80399718 Q gi|255764510|r 165 -QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS 198 (232) Q Consensus 165 -~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig 198 (232) .++|+|+-.+-..+..+.+.+...+. ++.++++. T Consensus 175 ~~~~~ai~~~~d~~A~g~~~al~~~g~~iP~di~vig~d 213 (277) T 3e61_A 175 ELSIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGYD 213 (277) T ss_dssp HHTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSB T ss_pred CCCCCEEECCCHHHHCCHHHHHHHCCCCCCCEEEEEEEC T ss_conf 079776760613655260799997499889558999978 No 124 >2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Probab=26.74 E-value=26 Score=13.84 Aligned_cols=110 Identities=5% Similarity=-0.071 Sum_probs=69.1 Q ss_pred CCCCCCEEEEEC-CC----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHH-HHHH-CCCCEEEEECHH-----HHH Q ss_conf 127775389721-56----75620146898469825676887504689998899-9862-378389980789-----999 Q gi|255764510|r 112 LFTPQKPLIYLG-GK----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTM-KNLL-QNADAILFYARS-----SVL 179 (232) Q Consensus 112 ~~~~~~~vl~~~-g~----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~-~~~~-~~~d~i~f~S~~-----~v~ 179 (232) ...+..+|++-. |. .++.++.......|+.|..-+.+.| +++. ..+. ++.++|.+.|.. .|- T Consensus 600 ~~GrrPrillakmG~dgH~~ga~~iA~~F~d~GfeV~~~~~f~T------peE~a~aA~e~~a~vvgics~d~~h~~lvp 673 (762) T 2xij_A 600 REGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQT------PREVAQQAVDADVHAVGVSTLAAGHKTLVP 673 (762) T ss_dssp HHSSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCC------HHHHHHHHHHTTCSEEEEEECSSCHHHHHH T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCC------HHHHHHHHHHCCCCEEEEECCCCCHHHHHH T ss_conf 82999759996578774410199999999857902852787789------999999999769999999268765688999 Q ss_pred HHHHHCCHHH-CCEEEEECC---HHHHHHHHHCCCCEEEECCCCCHHHHHHH Q ss_conf 9997135440-580399718---89999999769966998799998899999 Q gi|255764510|r 180 YFFSLPLPAK-ISAAFLCLS---NNIASAIPASYKNVVTVACFPKETSLLKL 227 (232) Q Consensus 180 ~~~~~~~~~~-~~~~~~~ig---~~tA~~~~~~g~~~~~va~~p~~~~ll~a 227 (232) .+.+.+...+ .++.++|-| +.-.+.+++.|...++-+.++-.+++.+. T Consensus 674 ~l~~~Lk~~g~~~i~VvvgGviP~~d~~~l~~aGV~~if~pg~~i~~~~~~i 725 (762) T 2xij_A 674 ELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQV 725 (762) T ss_dssp HHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHH T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH T ss_conf 9999999669998679980778878899999869887839998299999999 No 125 >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} SCOP: c.67.3.1 PDB: 3l5o_A Probab=25.91 E-value=27 Score=13.74 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=64.9 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC Q ss_conf 777538972156756201468984698256768875046899--988999862378389980789999999713544058 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS 191 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~ 191 (232) .++++|.++..- + +.+.+++.+.. +.+-++.|... ..+.....+...|+|++|.++-+..=++.+.....+ T Consensus 139 ~~gkkV~vVG~f---P-~i~~~~~~~~~---l~V~E~~p~~g~~p~~~~~~~Lp~~D~viiTGstlvN~Tl~~lL~~~~~ 211 (270) T 2h1q_A 139 VKGKKVGVVGHF---P-HLESLLEPICD---LSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRN 211 (270) T ss_dssp TTTSEEEEESCC---T-THHHHHTTTSE---EEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTT T ss_pred CCCCEEEEECCC---C-CHHHHHHCCCC---EEEEECCCCCCCCCHHHHHHHHHCCCEEEEEEEHHHCCCHHHHHHHCCC T ss_conf 579889998886---2-07999853895---7999658887998768889875128899998532541898999974767 Q ss_pred E-EEEECCHHHH--HHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 0-3997188999--9999769966998799998899999861 Q gi|255764510|r 192 A-AFLCLSNNIA--SAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 192 ~-~~~~ig~~tA--~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) . ..+-+||++- -.+-+.|...+.=..-.|.+.+++.++. T Consensus 212 a~~vvlvGPStp~~P~lf~~Gv~~lag~~V~d~~~~~~~i~~ 253 (270) T 2h1q_A 212 ARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAG 253 (270) T ss_dssp SSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTT T ss_pred CCEEEEECCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHC T ss_conf 776999889841379999538567978897289999999972 No 126 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Probab=25.37 E-value=28 Score=13.68 Aligned_cols=93 Identities=8% Similarity=-0.047 Sum_probs=50.4 Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEE Q ss_conf 9998642201277753897215675620-------1468984698256768875046899988999862---37838998 Q gi|255764510|r 103 AKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILF 172 (232) Q Consensus 103 ~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f 172 (232) ...+.... ...+..++.++.|...... +.+.+...|...... +..... ...+.....+ ..+++|+. T Consensus 162 ~~~a~~~l-~~~G~~~i~~~~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~~~ai~~ 237 (333) T 3jvd_A 162 FFQLTESV-LGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFH--FGHYSV-ESGEEMAQVVFNNGLPDALIV 237 (333) T ss_dssp HHHHHHHH-CCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECCSSH-HHHHHHHHHHHHTCCCSEEEE T ss_pred HHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEE--ECCCCH-HHHHHHHHHHHCCCCCCEEEE T ss_conf 77766777-64288036897044210367888999999999759973265--245520-217888999962799874310 Q ss_pred ECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 078999999971354405----803997188 Q gi|255764510|r 173 YARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 173 ~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) +|...+..+.+.+...+. ++.++++.. T Consensus 238 ~~d~~A~g~~~al~~~g~~vP~disvig~D~ 268 (333) T 3jvd_A 238 ASPRLMAGVMRAFTRLNVRVPHDVVIGGYDD 268 (333) T ss_dssp CCHHHHHHHHHHHHHTTCCTTTTCEEEEESC T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEEECC T ss_conf 7999999999999984999999879999798 No 127 >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Probab=25.34 E-value=28 Score=13.68 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=55.5 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEE Q ss_conf 45678999864220127775389721567-----56201468984698256768875046899988999862-3783899 Q gi|255764510|r 98 NSINLAKIIVEQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAIL 171 (232) Q Consensus 98 ~~~~~~~ll~~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~ 171 (232) ........+.+.... ...+++.++..+. ....+.+.+++.|+.+.....|.... .+....+..+. .++|+|+ T Consensus 124 ~~~~~~~~~~~~l~~-~g~~~vaii~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~-~d~~~~v~~i~~~~~d~v~ 201 (364) T 3lop_A 124 SYQQEIDKMITALVT-IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNT-ANVGPAVDKLLAADVQAIF 201 (364) T ss_dssp CHHHHHHHHHHHHHH-TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTS-CCCHHHHHHHHHSCCSEEE T ss_pred CHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEE T ss_conf 808999999999996-49939999844773038899999865540484599886047777-7789999999825998999 Q ss_pred EE-CHHHHHHHHHHCCHHHCCEEEEEC Q ss_conf 80-789999999713544058039971 Q gi|255764510|r 172 FY-ARSSVLYFFSLPLPAKISAAFLCL 197 (232) Q Consensus 172 f~-S~~~v~~~~~~~~~~~~~~~~~~i 197 (232) +. ++.....|++.+........++.. T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (364) T 3lop_A 202 LGATAEPAAQFVRQYRARGGEAQLLGL 228 (364) T ss_dssp EESCHHHHHHHHHHHHHTTCCCEEEEC T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 974789999999999984898769997 No 128 >3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* Probab=25.24 E-value=28 Score=13.67 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=15.1 Q ss_pred CEEEEE----CCHHHHHHHHHHHHHCCCCE Q ss_conf 938985----89688699999999879829 Q gi|255764510|r 1 MYIVIT----RPIKKALRTQEKIQKMGYIP 26 (232) Q Consensus 1 M~ilit----Rp~~~a~~~~~~L~~~G~~~ 26 (232) ||||+. |+.....++++.+.+ |+++ T Consensus 1 MKil~i~GS~r~~s~t~~l~~~~~~-~~e~ 29 (174) T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAA-LYHT 29 (174) T ss_dssp --CEEEECCCCTTCHHHHHHHHHHH-HTTC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHH-HCCE T ss_conf 9899998679988779999999982-0880 No 129 >1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 Probab=24.56 E-value=29 Score=13.59 Aligned_cols=133 Identities=11% Similarity=-0.031 Sum_probs=74.4 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCCE----ECCCHHHHHH Q ss_conf 886999999998798299942100000785200164475879998484679998862001--3630----0041589999 Q gi|255764510|r 10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR--HTPI----FAIGEASACL 83 (232) Q Consensus 10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~~----~~vg~~t~~~ 83 (232) .+...+.+.|++.|+++...+.-.. .-.++........-+..++.+...+...+.+ +.|+ +.....|.+. T Consensus 219 ~D~~ei~~lL~~~Gi~v~~~~~g~~----s~eei~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~~~~p~G~~~T~~~ 294 (533) T 1mio_A 219 GDAWEMDRVLEKIGYHVNATLTGDA----TYEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDGIVET 294 (533) T ss_dssp SHHHHHHHHHHHHTCEEEEEEETTC----CHHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHHH T ss_pred CCHHHHHHHHHHCCCCEEEECCCCC----CHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHH T ss_conf 3699999999983996489728998----778886376640999956578999999999851955650688781458999 Q ss_pred HHHHCCCCCCCCC-CCHHH-----HH---HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE Q ss_conf 7641012235444-54567-----89---99864220127775389721567562014689846982567688 Q gi|255764510|r 84 ARQKGFTQIFHGK-DNSIN-----LA---KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC 147 (232) Q Consensus 84 ~~~~~~~~~~~~~-~~~~~-----~~---~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v 147 (232) ++........... ...+. .. +.+.. ......++++.+..|....-.+...|+..|..+..... T Consensus 295 Lr~ia~~~g~~~~~~~~e~~I~~e~~~~~~~l~~-~~~~L~GKrv~i~~~~~~~~~l~~~l~elGmevv~~g~ 366 (533) T 1mio_A 295 LRDMAKCFDDPELTKRTEEVIAEEIAAIQDDLDY-FKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGF 366 (533) T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEE T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 9999998589606778999999999999999999-99975797499976726789999999986996999743 No 130 >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} Probab=24.36 E-value=29 Score=13.57 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=53.6 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEE Q ss_conf 789998642201277753897215675620-------1468984698256768875046899988999862--3783899 Q gi|255764510|r 101 NLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAIL 171 (232) Q Consensus 101 ~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~ 171 (232) ..+..+...... .+..++.++.|...... +.+.+.++|..+....++...............+ .+.+.++ T Consensus 166 ~~~~~a~~~L~~-~G~~ri~~i~~~~~~~~~~~R~~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 244 (332) T 2o20_A 166 LAAYQSTKKLID-SGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAV 244 (332) T ss_dssp HHHHHHHHHHHH-TTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHHH-HCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEE T ss_conf 999999999998-1898511762786650688999999999998599999536995563067899999996431465389 Q ss_pred EECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 8078999999971354405----803997188 Q gi|255764510|r 172 FYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 172 f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) .++-..+..++..+...+. ++.+++++. T Consensus 245 ~~~d~~A~g~~~al~~~g~~vp~dv~vig~d~ 276 (332) T 2o20_A 245 VSHDTVAVGLLSAMMDKGVKVPEDFEIISGAN 276 (332) T ss_dssp ESCHHHHHHHHHHHHHTTCCTTTTCEEEESSC T ss_pred EECHHHHHHHHHHHHHCCCCCCCCEEEEEECC T ss_conf 84389999999999982987789879999688 No 131 >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Probab=24.17 E-value=29 Score=13.55 Aligned_cols=28 Identities=25% Similarity=0.083 Sum_probs=22.6 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEE Q ss_conf 9389858968-869999999987982999 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVM 28 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~ 28 (232) ||||||=-.. -+..++..|.+.|.+++. T Consensus 1 MKILVtGatGfiGs~l~~~Ll~~g~~~vi 29 (361) T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVV 29 (361) T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEE T ss_conf 96999888868999999999978996899 No 132 >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A* Probab=24.16 E-value=29 Score=13.54 Aligned_cols=28 Identities=14% Similarity=-0.051 Sum_probs=19.8 Q ss_pred EEEEECC---HHHHHHHHHHHHHCCCCEEEE Q ss_conf 3898589---688699999999879829994 Q gi|255764510|r 2 YIVITRP---IKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 2 ~ilitRp---~~~a~~~~~~L~~~G~~~i~~ 29 (232) .+|||=- ..=+...+..|.+.|++++.. T Consensus 32 ~alVTGass~~GIG~aiA~~la~~Ga~Vvi~ 62 (296) T 3k31_A 32 KGVIIGVANDKSLAWGIAKAVCAQGAEVALT 62 (296) T ss_dssp EEEEECCCSTTSHHHHHHHHHHHTTCEEEEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 8999899998649999999999869999999 No 133 >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Probab=24.00 E-value=26 Score=13.86 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=26.8 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 999999987982999421000007852001644758799984846 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) ...+.++..|+.++.+|.-... +.....+...|.|+||-.. T Consensus 56 sYvk~ve~aGa~~vpIp~~~~~----~~~~~~l~~idGiilpGG~ 96 (315) T 1l9x_A 56 SYVKYLESAGARVVPVRLDLTE----KDYEILFKSINGILFPGGS 96 (315) T ss_dssp HHHHHHHHTTCEEEEECSSCCH----HHHHHHHHHSSEEEECCCC T ss_pred HHHHHHHHCCCEEEEECCCCCH----HHHHHHHHHCCEEEECCCC T ss_conf 9999999879989998899998----9999986216989977898 No 134 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Probab=23.94 E-value=29 Score=13.52 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=53.9 Q ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHHHHHHHCCHHHCC-EEEEEC---C- Q ss_conf 1468984698256768875046899988999862378389980789-------999999713544058-039971---8- Q gi|255764510|r 131 FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVLYFFSLPLPAKIS-AAFLCL---S- 198 (232) Q Consensus 131 l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~~~~~~~~~~~~~-~~~~~i---g- 198 (232) +.+.+.+.|..|..+.+... ....+.+.+...|+++|.||. .++.|++.+.....+ ....++ | T Consensus 272 ia~~~~~~g~~v~~~~~~~~-----~~~~~~~~~~~~d~iilgspt~~g~~~~~~~~fl~~l~~~~~~~k~~~~fgs~g~ 346 (398) T 1ycg_A 272 LMDGLVAGGCEVKLFKLSVS-----DRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGW 346 (398) T ss_dssp HHHHHHHTTCEEEEEEGGGS-----CHHHHHHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEEEESS T ss_pred HHHHHHHCCCEEEEEECCCC-----CHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC T ss_conf 99887527967999987778-----9799999998679799972762886619999999998604657998999993087 Q ss_pred -----HHHHHHHHHCCCCE-----EEECCCCCHHHHHHH Q ss_conf -----89999999769966-----998799998899999 Q gi|255764510|r 199 -----NNIASAIPASYKNV-----VTVACFPKETSLLKL 227 (232) Q Consensus 199 -----~~tA~~~~~~g~~~-----~~va~~p~~~~ll~a 227 (232) ....+.++..|+.. +.+-..|+++.+=++ T Consensus 347 ~~~a~~~~~~~l~~~g~~~v~~~~~~~~~~P~~~~l~~~ 385 (398) T 1ycg_A 347 GGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRC 385 (398) T ss_dssp SCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCEEEECCEEEEECCCCHHHHHHH T ss_conf 867999999999977998961771899457998999999 No 135 >3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129} Probab=23.94 E-value=30 Score=13.52 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=33.1 Q ss_pred EEEEECCHHH---HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCC---------CCCCCEEEEECH Q ss_conf 3898589688---6999999998798299942100000785200164---------475879998484 Q gi|255764510|r 2 YIVITRPIKK---ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAM---------QQSYGAIAITSS 57 (232) Q Consensus 2 ~ilitRp~~~---a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~---------~~~~d~iiftS~ 57 (232) .|+|||=.++ +..|..+|+++|+.+..+=.|+-.|.+-+...++ -..-+.+|+|.| T Consensus 114 sVVITqy~~q~~~a~~F~~~Le~~GIkvy~Hy~i~GYP~dv~~IVSdeGyGkN~yIeTtrpLVVVTAP 181 (507) T 3bh1_A 114 HVVLTQLENDNRLALAFIERLQRLGIKVSRHRVIPGYPTDMDRIVSDEGFGLNEYAETTRDLVVVTAP 181 (507) T ss_dssp EEEEESCCTTCHHHHHHHHHHHTTTCEEEECCCCTTTTTCHHHHSSTTTGGGSCCCCCCSSEEEEECS T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCEECCCCEEEEECC T ss_conf 19998368996188999999997798179954658988885615673556778741236876999689 No 136 >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Probab=23.77 E-value=30 Score=13.50 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=32.9 Q ss_pred EEEEEC------CHHHHHHHHHHHHHCCCCEEEECCEEEECCC------------CCCCCCCCCCCCEEEEECHH Q ss_conf 389858------9688699999999879829994210000078------------52001644758799984846 Q gi|255764510|r 2 YIVITR------PIKKALRTQEKIQKMGYIPVMMPLSYFIHDR------------ESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 2 ~ilitR------p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~------------~~~~~~~~~~~d~iiftS~~ 58 (232) ||||.- +..=+..+++-+++.|+++....+-...... ......++.+||.|||-||. T Consensus 7 Kilivy~S~~GnT~~la~~i~~g~~~~g~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iilgsP~ 81 (200) T 2a5l_A 7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT 81 (200) T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEEC T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEECCC T ss_conf 289999389808999999999988644966899843652157787724565335554788789758976995563 No 137 >3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} Probab=23.58 E-value=30 Score=13.48 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=94.8 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCC---C----CCCCCCCCEEEEEC--HHHH-HHHHHHHCCCCCEECCCHHHHHH Q ss_conf 9999999879829994210000078520---0----16447587999848--4679-99886200136300041589999 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESV---F----LAMQQSYGAIAITS--SESL-STLPANFCRHTPIFAIGEASACL 83 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~----~~~~~~~d~iiftS--~~av-~~~~~~~~~~~~~~~vg~~t~~~ 83 (232) -+.+.++++|+++...- .....+.. . ...-..+|+|++.. ..+. ..+......+.|+..+...... T Consensus 21 g~~~~a~~~g~~~~~~~---~~~~~d~~~q~~~i~~~l~~~~~Dgiii~~~~~~~~~~~i~~~~~~~Ipvv~~d~~~~~- 96 (276) T 3ksm_A 21 GAQKAADEAGVTLLHRS---TKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG- 96 (276) T ss_dssp HHHHHHHHHTCEEEECC---CSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS- T ss_pred HHHHHHHHCCCEEEEEE---CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCC- T ss_conf 99999998299999995---89986899999999999982799899992798577799999999779949997255467- Q ss_pred HHHHCCCCCCCCCC--CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH-------HHHHHHCCCEEEEEEEEEECCCC Q ss_conf 76410122354445--4567899986422012777538972156756201-------46898469825676887504689 Q gi|255764510|r 84 ARQKGFTQIFHGKD--NSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHF-------EDYLIEHKIPLRVIDCYYSQDIA 154 (232) Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l-------~~~L~~~g~~v~~~~vY~~~~~~ 154 (232) ........... .+....+.+.... ...+.++++++.|....... .+.+.+.+ .+..+..+ .... T Consensus 97 ---~~~~~~v~~d~~~~g~~a~~~l~~~~-~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~~~~~~-~~~~~~~~--~~~~ 169 (276) T 3ksm_A 97 ---DAHQGLVATDNYAAGQLAARALLATL-DLSKERNIALLRLRAGNASTDQREQGFLDVLRKHD-KIRIIAAP--YAGD 169 (276) T ss_dssp ---SCSSEEEECCHHHHHHHHHHHHHHHS-CTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCT-TEEEEECC--BCCS T ss_pred ---CCCCEEEECCCHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEE--EEHH T ss_conf ---76521894261888999999999874-22898559981477777608899999999999779-86430355--4112 Q ss_pred CCHH---HHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC--CEEEEECC--HHHHHHHHHCCCCEEEECCCCCHHH Q ss_conf 9988---999862---37838998078999999971354405--80399718--8999999976996699879999889 Q gi|255764510|r 155 YPET---TMKNLL---QNADAILFYARSSVLYFFSLPLPAKI--SAAFLCLS--NNIASAIPASYKNVVTVACFPKETS 223 (232) Q Consensus 155 ~~~~---~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~ig--~~tA~~~~~~g~~~~~va~~p~~~~ 223 (232) .... ....++ .++|+++..+...+....+.+...+. ++.+++++ +...+.+. .|.-...+...|...+ T Consensus 170 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a~~~~g~~~~i~vvg~d~~~~~~~~i~-~g~~~~ti~q~~~~~g 247 (276) T 3ksm_A 170 DRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMY-AGEISNLVVQNPEYMG 247 (276) T ss_dssp SHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHHH-TTSSSEEEECCHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH-CCCCEEEEECCHHHHH T ss_conf 34789999887651289850442378299999999999769999818998789799999987-5995399958999999 No 138 >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* Probab=23.51 E-value=30 Score=13.47 Aligned_cols=14 Identities=0% Similarity=-0.209 Sum_probs=7.8 Q ss_pred HHCCCCEEEECCEE Q ss_conf 98798299942100 Q gi|255764510|r 20 QKMGYIPVMMPLSY 33 (232) Q Consensus 20 ~~~G~~~i~~Pli~ 33 (232) ++.|.++..+-+.+ T Consensus 31 ~~~~~~~~~i~l~~ 44 (197) T 2vzf_A 31 ARSDSQGRHIHVID 44 (197) T ss_dssp HHSSEEEEEEEGGG T ss_pred HHCCCEEEEEEECC T ss_conf 43598699997012 No 139 >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Probab=23.31 E-value=30 Score=13.45 Aligned_cols=129 Identities=7% Similarity=-0.025 Sum_probs=58.0 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCC----CCCCCCCCCCCEEE-EECHHHHHHH-HHHHCCCCCEE Q ss_conf 938985896886999999998798299942100000785----20016447587999-8484679998-86200136300 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRE----SVFLAMQQSYGAIA-ITSSESLSTL-PANFCRHTPIF 74 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~----~~~~~~~~~~d~ii-ftS~~av~~~-~~~~~~~~~~~ 74 (232) |||-|.==-.-+...++.|.+.|++....= +..+... +.+.....+.|.++ ++++.++.-. ...+...++++ T Consensus 1 MkVgIIG~G~iG~~v~~~l~~~~~el~~v~--d~~~~~~~~~~~~de~l~~~~DvVie~a~~~a~~e~a~~~L~~G~~vv 78 (236) T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAIL--DVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLI 78 (236) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE--CSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEE T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEE--ECCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEE T ss_conf 979999588899999999971998899999--678502244489999943888789990697404799999997399799 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCC Q ss_conf 0415899997641012235444545678999864220127775389721567562014689846982567688750468 Q gi|255764510|r 75 AIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDI 153 (232) Q Consensus 75 ~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~ 153 (232) +.-.+. .......+.+..... ..+.++.++.|..+.-+....++. .++ -+.|.+... T Consensus 79 v~S~ga----------------lad~~~~~~L~~~A~--~~g~~l~i~sGaigGld~l~aa~~---~l~-~v~~~~~k~ 135 (236) T 2dc1_A 79 VLSTGA----------------FADRDFLSRVREVCR--KTGRRVYIASGAIGGLDAIFSASE---LIE-EIVLTTRKN 135 (236) T ss_dssp ESCGGG----------------GGSHHHHHHHHHHHH--HHCCCEEECCTTCSCHHHHHHTGG---GEE-EEEEEEEEE T ss_pred EEECHH----------------HCCCHHHHHHHHHHH--HCCCCEEECCCHHCCHHHHHHHHH---HHH-CCEEECCCC T ss_conf 962216----------------317349999999998--658837844200114489999975---433-019961437 No 140 >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A* Probab=23.25 E-value=30 Score=13.44 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=17.7 Q ss_pred CEEEEE----CCHHHHHHHHHHHHHC---CCCEEEE Q ss_conf 938985----8968869999999987---9829994 Q gi|255764510|r 1 MYIVIT----RPIKKALRTQEKIQKM---GYIPVMM 29 (232) Q Consensus 1 M~ilit----Rp~~~a~~~~~~L~~~---G~~~i~~ 29 (232) |||++. |+...+..+++.+.+. |+++-.+ T Consensus 7 MKIl~I~GS~R~~S~t~~l~~~~~~~~~~g~ev~~i 42 (193) T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELA 42 (193) T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEEC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 779999898998888999999999864699989998 No 141 >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Probab=22.39 E-value=32 Score=13.34 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=31.2 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 938985896886999999998798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) |||=|.-=...-...++.|++.|+++.... ...++.++|.||+.-. T Consensus 24 mkigvl~~~Gn~~s~~~AL~~lG~~~~iv~-----------~~~~l~~~D~lILPGG 69 (219) T 1q7r_A 24 MKIGVLGLQGAVREHVRAIEACGAEAVIVK-----------KSEQLEGLDGLVLPGG 69 (219) T ss_dssp CEEEEESCGGGCHHHHHHHHHTTCEEEEEC-----------SGGGGTTCSEEEECCC T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECCC T ss_conf 779999658839999999998799699989-----------9899824999999999 No 142 >1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Probab=22.23 E-value=32 Score=13.32 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=21.6 Q ss_pred CCCEEEEECHHHHHHHHHHHC----CCCCEECCCHHHHHHHHHHCCC Q ss_conf 587999848467999886200----1363000415899997641012 Q gi|255764510|r 48 SYGAIAITSSESLSTLPANFC----RHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 48 ~~d~iiftS~~av~~~~~~~~----~~~~~~~vg~~t~~~~~~~~~~ 90 (232) +...|=+-|...+.+|...+. ...........|+..+.+.|.. T Consensus 20 ~gm~IGLGtGsTv~~~i~~L~~~~~~~~~~v~tS~~t~~~~~~~Gi~ 66 (219) T 1m0s_A 20 ADRIVGVGSGSTVNCFIEALGTIKDKIQGAVAASKESEELLRKQGIE 66 (219) T ss_dssp TTSEEEECCSHHHHHHHHHHHTTGGGSCEEEESSHHHHHHHHHTTCC T ss_pred CCCEEEECCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCC T ss_conf 99999947569999999999875426615884868999999987997 No 143 >2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A Probab=21.85 E-value=32 Score=13.27 Aligned_cols=59 Identities=10% Similarity=-0.021 Sum_probs=30.8 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEE Q ss_conf 41012235444545678999864220---127775389721567562----014689846982567 Q gi|255764510|r 86 QKGFTQIFHGKDNSINLAKIIVEQKV---LFTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRV 144 (232) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~ 144 (232) ++|.......+..+...++.+.+... .....++|+++||.+-+. .+...|...|+.|.. T Consensus 46 ~~Gis~~~LME~AG~~va~~i~~~~~~~~~~~~~~~IlvlcG~GNNGGDGlv~AR~L~~~G~~V~v 111 (265) T 2o8n_A 46 EYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTI 111 (265) T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHSCGGGSSSSSCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEE T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 729899999999999999999996552223568984999988998769999999999975990699 No 144 >1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 Probab=21.75 E-value=33 Score=13.26 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=29.0 Q ss_pred CEEEEE----CCHHHHHHHHHHHHHCCCC--EEEECCEEEECCCC-------------CC--CCCCCCCCCEEEEECHH Q ss_conf 938985----8968869999999987982--99942100000785-------------20--01644758799984846 Q gi|255764510|r 1 MYIVIT----RPIKKALRTQEKIQKMGYI--PVMMPLSYFIHDRE-------------SV--FLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilit----Rp~~~a~~~~~~L~~~G~~--~i~~Pli~i~~~~~-------------~~--~~~~~~~~d~iiftS~~ 58 (232) ||||+. |+......+++.+.+ |++ .+.+.-.++.+... +. ....+..+|.|||.||. T Consensus 4 MKil~i~gSpr~~g~t~~l~~~~~~-g~e~~~i~l~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~i~~AD~iV~~sP~ 81 (184) T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPI 81 (184) T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEEC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEEEEE T ss_conf 8899998889978789999999974-78878998020575400024443037776407899999999968979998752 No 145 >3a11_A Translation initiation factor EIF-2B, delta subunit; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} Probab=21.43 E-value=33 Score=13.22 Aligned_cols=103 Identities=9% Similarity=-0.027 Sum_probs=41.0 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHHHCC Q ss_conf 2777538972156756201468984698256768875046899988999862-378389980789999999713544058 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPAKIS 191 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~~~~ 191 (232) ...+..|+-.|..+.--.+.....+.|.... +.+-++.|.-.-.....++. .++++.++.-. ++..++..+..--.. T Consensus 139 I~~g~~ILT~~~S~tv~~~l~~a~~~gk~~~-V~v~EsrP~~qGr~~a~eL~~~gI~~t~I~Ds-a~~~~m~~vd~VlvG 216 (338) T 3a11_A 139 IEDGDVIMTHCHSKAAISVMKTAWEQGKDIK-VIVTETRPKWQGKITAKELASYGIPVIYVVDS-AARHYMKMTDKVVMG 216 (338) T ss_dssp CCTTCEEEECSCCHHHHHHHHHHHHTTCCCE-EEEECCTTTTHHHHHHHHHHHTTCCEEEECGG-GTTTTGGGCSEEEEC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCHHHHHHHHCCCCEEEECHH-HHHHHHHCCCEEEEE T ss_conf 5899879983696899999999998799758-99974797413507799998379985895267-899997308849984 Q ss_pred E--------EEEECCH-HHHHHHHHCCCCEEEECC Q ss_conf 0--------3997188-999999976996699879 Q gi|255764510|r 192 A--------AFLCLSN-NIASAIPASYKNVVTVAC 217 (232) Q Consensus 192 ~--------~~~~ig~-~tA~~~~~~g~~~~~va~ 217 (232) . .+-=+|. .+|-.++..+.....+|+ T Consensus 217 Ad~v~~nG~v~nkiGT~~iA~~Ak~~~vPv~V~a~ 251 (338) T 3a11_A 217 ADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251 (338) T ss_dssp CSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECC T ss_pred EEEEECCCCEEECCCHHHHHHHHHHCCCCEEEEEC T ss_conf 23786179874433078999987755986799704 No 146 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=21.37 E-value=33 Score=13.21 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=62.8 Q ss_pred CCCCEEEEE--CCCCCCC----CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECH-------HHHHH Q ss_conf 777538972--1567562----0146898469825676887504689998899986237838998078-------99999 Q gi|255764510|r 114 TPQKPLIYL--GGKPRNF----HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYAR-------SSVLY 180 (232) Q Consensus 114 ~~~~~vl~~--~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~-------~~v~~ 180 (232) ....+|+++ +..+... .+.+.+...|..++...+ . ..........+...|+++|.|| ..+.. T Consensus 254 ~~~~kv~Ivy~S~~GnT~~~A~~i~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~~~d~ii~Gspt~~~~~~~~~~~ 328 (404) T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCL---H--EDDRSEIVKDILESGAIALGAPTIYDEPYPSVGD 328 (404) T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEET---T--TSCHHHHHHHHHTCSEEEEECCEETTEECTHHHH T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE---C--CCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH T ss_conf 5576262898558657999999999988757981899992---5--8897888999985795599636517846889999 Q ss_pred HHHHCCHHH---C-CEEEEECC---------HHHHHHHHHCCCCE---EEECCCCCHHHHHHH Q ss_conf 997135440---5-80399718---------89999999769966---998799998899999 Q gi|255764510|r 181 FFSLPLPAK---I-SAAFLCLS---------NNIASAIPASYKNV---VTVACFPKETSLLKL 227 (232) Q Consensus 181 ~~~~~~~~~---~-~~~~~~ig---------~~tA~~~~~~g~~~---~~va~~p~~~~ll~a 227 (232) |++.+.... . ....+++| ....+.+...|++. ..+.-.|+++.+=++ T Consensus 329 fl~~l~~~~~~~~~gK~~~~Fgs~g~~g~a~~~~~~~l~~~G~~vv~~~~~~~~P~~e~l~~~ 391 (404) T 2ohh_A 329 LLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDAC 391 (404) T ss_dssp HHHHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEEEEEEEEESSCCHHHHHHH T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCEEEEECCCHHHHHHH T ss_conf 999986576456579869999904887699999999999779989456789507998999999 No 147 >1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 Probab=21.36 E-value=33 Score=13.21 Aligned_cols=198 Identities=10% Similarity=-0.028 Sum_probs=95.2 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEEC-------------CCCC-CCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCC Q ss_conf 6886999999998798299942100000-------------7852-00164475879998484679998862001--363 Q gi|255764510|r 9 IKKALRTQEKIQKMGYIPVMMPLSYFIH-------------DRES-VFLAMQQSYGAIAITSSESLSTLPANFCR--HTP 72 (232) Q Consensus 9 ~~~a~~~~~~L~~~G~~~i~~Pli~i~~-------------~~~~-~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~ 72 (232) ..+...+.++|++.|++++.+|-..-.. .... .++........-+..++.+-..+...+.+ +.| T Consensus 181 ~~d~~el~~lL~~~Gi~~~~~~~~s~~~~~~~~~~~~~~~~gg~~le~i~~~~~A~lniv~~~~~~~~~A~~L~~~~GiP 260 (458) T 1mio_B 181 PADMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSYASDLGAKTLEKKCKVP 260 (458) T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESHHHHHHHHHHHHHHSCCC T ss_pred CCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCC T ss_conf 01499999999982995675256200234665675104327999799999764188999988556578999999986998 Q ss_pred EEC----CC-HHHHHHHHHHCCCCCCCCCCC-HHHHHHHH--HHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEE Q ss_conf 000----41-589999764101223544454-56789998--64220127775389721567562014689846982567 Q gi|255764510|r 73 IFA----IG-EASACLARQKGFTQIFHGKDN-SINLAKII--VEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRV 144 (232) Q Consensus 73 ~~~----vg-~~t~~~~~~~~~~~~~~~~~~-~~~~~~ll--~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~ 144 (232) +.. .| ..|.+.+++............ .+....+. .........++++.+..+....-.+.+.|...|..+.. T Consensus 261 yi~~~~p~G~~~t~~~l~~l~~~~G~~~~~~i~~er~~~~~~~~~~~~~l~gkrv~I~~~~~~~~~l~~~L~elG~~~~~ 340 (458) T 1mio_B 261 FKTLRTPIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIELGAIPKY 340 (458) T ss_dssp EEEECCCBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTTTCEEEE T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEE T ss_conf 78558876878999999999999689817878876999999999999972898899989828899999999983990038 Q ss_pred EEEEEECCCCCCHHHHHHHHC--CC-CEEEEE--CHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEE Q ss_conf 688750468999889998623--78-389980--7899999997135440580399718899999997699669 Q gi|255764510|r 145 IDCYYSQDIAYPETTMKNLLQ--NA-DAILFY--ARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVV 213 (232) Q Consensus 145 ~~vY~~~~~~~~~~~~~~~~~--~~-d~i~f~--S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~ 213 (232) +.+.. ..+...+.....+. .. ...++. +...+..+.+...+ + ++.-+......+++.|..-+ T Consensus 341 ~~~~~--~~~~~~~~~~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~p---D--liig~s~~~~~a~~~~ip~i 407 (458) T 1mio_B 341 VVTGT--PGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGV---D--LLISNTYGKFIAREENIPFV 407 (458) T ss_dssp EEESS--CCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCC---S--EEEESGGGHHHHHHHTCCEE T ss_pred EEECC--CCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCC---C--EEEECCHHHHHHHHCCCCEE T ss_conf 98378--98778999999998558878679979899999999975399---9--99979367899997599879 No 148 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=21.29 E-value=33 Score=13.20 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=17.2 Q ss_pred EEEECC-HHHHHHHHHHHHHCCCCEEEEC Q ss_conf 898589-6886999999998798299942 Q gi|255764510|r 3 IVITRP-IKKALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 3 ilitRp-~~~a~~~~~~L~~~G~~~i~~P 30 (232) ||||=- ..=+..++..|.+.|++++..- T Consensus 10 vlITGas~GIG~aiA~~la~~Ga~V~i~~ 38 (252) T 3h7a_A 10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGR 38 (252) T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEEEE T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 99975855899999999998799999998 No 149 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Probab=21.23 E-value=33 Score=13.19 Aligned_cols=27 Identities=4% Similarity=-0.224 Sum_probs=16.3 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 898589688699999999879829994 Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~~i~~ 29 (232) |+|.=---=+.-++..|.+.|+++... T Consensus 11 V~IIGlGlIG~Sla~aL~~~g~~V~g~ 37 (341) T 3ktd_A 11 VCILGLGLIGGSLLRDLHAANHSVFGY 37 (341) T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEE T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEE T ss_conf 899974989999999998787989999 No 150 >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* Probab=20.82 E-value=34 Score=13.14 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=21.3 Q ss_pred CEEEEECC----H-----HHHHHHHHHHHHCCCCEEEE Q ss_conf 93898589----6-----88699999999879829994 Q gi|255764510|r 1 MYIVITRP----I-----KKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp----~-----~~a~~~~~~L~~~G~~~i~~ 29 (232) |||++.-| . .....+++.|.+.|+++..+ T Consensus 21 MkI~iv~~~~~p~~GG~~~~i~~La~~L~~~GheV~v~ 58 (406) T 2gek_A 21 MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406) T ss_dssp CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 88999899878999879999999999999779989999 No 151 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Probab=20.48 E-value=35 Score=13.10 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=23.6 Q ss_pred CEEEEECC-HHHHHHHHHHHHHCCCCEEEE Q ss_conf 93898589-688699999999879829994 Q gi|255764510|r 1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=. ..-+..++..|.+.|+++..+ T Consensus 5 ~KIlItGatG~iG~~l~~~Ll~~g~~V~~l 34 (227) T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAV 34 (227) T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 999998899889999999999784989999 No 152 >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Probab=20.33 E-value=35 Score=13.08 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=24.6 Q ss_pred CEEEEE-CCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 938985-89688699999999879829994 Q gi|255764510|r 1 MYIVIT-RPIKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilit-Rp~~~a~~~~~~L~~~G~~~i~~ 29 (232) |||.|+ =...-+..++..|.+.|++++.. T Consensus 1 MkI~iigGaG~iG~alA~~la~~G~~V~l~ 30 (212) T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVG 30 (212) T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEE T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEE T ss_conf 979999484599999999999889989999 No 153 >3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP} Probab=20.31 E-value=35 Score=13.07 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHHHCCCCEE-EECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH Q ss_conf 6886999999998798299-94210000078520016447587999848467999886 Q gi|255764510|r 9 IKKALRTQEKIQKMGYIPV-MMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPA 65 (232) Q Consensus 9 ~~~a~~~~~~L~~~G~~~i-~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~ 65 (232) ......+...++++|++.+ .+++-+-+.-+++.....+.+.|+|.|+-.+-.+.... T Consensus 70 ~~~~~~y~~~f~~lG~~~v~~l~i~~r~~A~~~~~~~~l~~Ad~I~~~GGdq~~l~~~ 127 (291) T 3en0_A 70 LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGL 127 (291) T ss_dssp HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHH T ss_conf 8999999999998599658999446836648889999985199999948999999999 No 154 >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Probab=20.13 E-value=35 Score=13.05 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=23.6 Q ss_pred CEEEEECC-HHHHHHHHHHHHHCCCCEEEE Q ss_conf 93898589-688699999999879829994 Q gi|255764510|r 1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=- .--+..++..|.+.|+++..+ T Consensus 14 mkilVtGatG~vG~~l~~~L~~~g~~V~~l 43 (342) T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLI 43 (342) T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 949998999889999999999786989999 No 155 >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-2; 2.00A {Corynebacterium glutamicum} Probab=20.07 E-value=35 Score=13.04 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=33.6 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEE-----CCCCCCCCCCCCCCCEEEEEC Q ss_conf 9389858968-8699999999879829994210000-----078520016447587999848 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFI-----HDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~-----~~~~~~~~~~~~~~d~iiftS 56 (232) ||||||=... -+..++..|.+.|++++.+---... ....+.....+.+.|.||-.. T Consensus 148 mkILITGatGfIG~~Lv~~L~~~Gh~V~~l~R~~~~~~~~~~d~~~~~~~~l~~~D~VIHlA 209 (516) T 3oh8_A 148 LTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLA 209 (516) T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCHHHHHHHHCCCCEEEECC T ss_conf 98999898758999999999978798999978864322222760156888745999999998 No 156 >3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} Probab=20.07 E-value=35 Score=13.04 Aligned_cols=179 Identities=12% Similarity=0.092 Sum_probs=86.7 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf 9999999987982999421000007852-001644758799984846-79998862001363000415899997641012 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) ..+.+.+++.|+..+.++.-.-...... +........|++++.+.. .-..+........|+...+..... .... T Consensus 28 ~gi~~~a~~~Gy~l~l~~~~~~~~~e~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~~~----~~~~ 103 (291) T 3egc_A 28 SGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTELPKTFPIVAVNRELRI----PGCG 103 (291) T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSCTTSCEEEESSCCCC----TTCE T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCC----CCCC T ss_conf 999999998699899997899979999999999975987899942445569999985328968972022368----9998 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHH Q ss_conf 2354445456789998642201277753897215675620-------14689846982567688750468-999889998 Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKN 162 (232) Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~ 162 (232) .. ..+.......+...... .+..++.++.|...... +.+.+.+.|..+.....+..... ..-.+.... T Consensus 104 ~v---~~d~~~a~~~~~~~L~~-~G~~~i~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 179 (291) T 3egc_A 104 AV---LSENVRGARTAVEYLIA-RGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIK 179 (291) T ss_dssp EE---EECHHHHHHHHHHHHHH-TTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHH T ss_pred EE---EECHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHH T ss_conf 89---85579999999999997-699569883277433058899999999999849984321123677645579999999 Q ss_pred HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH Q ss_conf 62---37838998078999999971354405----803997188 Q gi|255764510|r 163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~ 199 (232) ++ ..+++|+.++-..+..+.+.+...+. ++.++++.. T Consensus 180 ~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vig~D~ 223 (291) T 3egc_A 180 VLTGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDN 223 (291) T ss_dssp HHTC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESC T ss_pred HHHCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC T ss_conf 98559998510115789998799999983898899868999678 Done!