Query         gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs    102 out of 2643
Neff          9.6 
Searched_HMMs 23785
Date          Sat Jun  4 22:51:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764510.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1jr2_A Uroporphyrinogen-III sy 100.0 4.9E-44       0  282.2  21.3  227    1-230    22-278 (286)
  2 3mw8_A Uroporphyrinogen-III sy 100.0 3.7E-42       0  271.0  21.1  229    1-230     2-240 (240)
  3 3d8t_A Uroporphyrinogen-III sy 100.0 2.1E-42       0  272.4  17.4  223    1-230    34-279 (286)
  4 1wcw_A Uroporphyrinogen III sy 100.0 3.1E-39 1.3E-43  253.4  18.4  223    1-230     9-254 (261)
  5 3p9z_A Uroporphyrinogen III co 100.0 4.6E-32 1.9E-36  210.4  21.3  200   25-229     6-222 (229)
  6 3mw8_A Uroporphyrinogen-III sy  99.1   2E-10 8.5E-15   80.5   8.6  106  116-222     1-106 (240)
  7 3d8t_A Uroporphyrinogen-III sy  99.1 1.4E-10 5.7E-15   81.6   7.3  113  115-229    32-153 (286)
  8 1wcw_A Uroporphyrinogen III sy  99.1 4.6E-10 1.9E-14   78.4   8.8  113  116-230     8-129 (261)
  9 1jr2_A Uroporphyrinogen-III sy  99.0 2.1E-09 8.7E-14   74.5  10.4  114  115-231    20-153 (286)
 10 3p9z_A Uroporphyrinogen III co  98.6 1.4E-07 5.7E-12   63.6   7.8  108    2-109   112-224 (229)
 11 2ekl_A D-3-phosphoglycerate de  96.8  0.0027 1.1E-07   37.7   6.3  167    1-178     6-208 (313)
 12 2cuk_A Glycerate dehydrogenase  96.6  0.0025 1.1E-07   37.9   4.8  166    1-176     1-203 (311)
 13 1wwk_A Phosphoglycerate dehydr  96.3   0.017 7.1E-07   33.0   7.7  166    1-177     4-207 (307)
 14 1sc6_A PGDH, D-3-phosphoglycer  96.1   0.029 1.2E-06   31.6   8.1  172    1-177     5-208 (404)
 15 3oet_A Erythronate-4-phosphate  95.9    0.01 4.3E-07   34.3   5.2  163    1-175     4-179 (381)
 16 2g76_A 3-PGDH, D-3-phosphoglyc  95.7   0.031 1.3E-06   31.4   6.9  166    1-176    27-229 (335)
 17 3k9c_A Transcriptional regulat  95.7   0.085 3.6E-06   28.8   9.1  177   14-198    32-221 (289)
 18 2o4c_A Erythronate-4-phosphate  95.4   0.029 1.2E-06   31.5   5.9  164    1-177     1-178 (380)
 19 2gcg_A Glyoxylate reductase/hy  94.9   0.072   3E-06   29.2   6.6  173    1-177     9-221 (330)
 20 1xdw_A NAD+-dependent (R)-2-hy  94.6     0.2 8.5E-06   26.5   9.7  170    1-177     1-209 (331)
 21 1gdh_A D-glycerate dehydrogena  94.6    0.14 5.8E-06   27.5   7.4  168    1-177     2-213 (320)
 22 3k5p_A D-3-phosphoglycerate de  94.5    0.12 5.3E-06   27.8   7.1  173    1-179    16-221 (416)
 23 2dbq_A Glyoxylate reductase; D  93.1    0.38 1.6E-05   24.9   7.4  168    1-177     3-215 (334)
 24 3c3k_A Alanine racemase; struc  92.7    0.44 1.9E-05   24.5   9.7  180   13-200    28-222 (285)
 25 1o1y_A Conserved hypothetical   90.2    0.36 1.5E-05   25.0   4.7   52    1-57     13-66  (239)
 26 3m3p_A Glutamine amido transfe  86.9    0.71   3E-05   23.2   4.4   51    1-56      3-56  (250)
 27 2pi1_A D-lactate dehydrogenase  86.8    0.35 1.5E-05   25.1   2.8  165    1-176     1-204 (334)
 28 1dxy_A D-2-hydroxyisocaproate   86.8     1.4 5.8E-05   21.5  10.4  171    1-176     1-207 (333)
 29 3jy6_A Transcriptional regulat  85.3     1.6 6.9E-05   21.1  11.0  175   13-198    27-217 (276)
 30 3llv_A Exopolyphosphatase-rela  85.1     1.7 6.9E-05   21.0   6.6   76  156-231    59-138 (141)
 31 3gyb_A Transcriptional regulat  84.6     1.8 7.4E-05   20.9   7.7  178   13-201    25-215 (280)
 32 3i09_A Periplasmic branched-ch  83.6     1.9 8.1E-05   20.6   7.5  141   48-190    71-220 (375)
 33 3ba1_A HPPR, hydroxyphenylpyru  83.5     1.6 6.9E-05   21.0   4.9  168    1-177    24-226 (333)
 34 3g85_A Transcriptional regulat  83.5       2 8.2E-05   20.6  12.1  175   14-198    33-224 (289)
 35 3clk_A Transcription regulator  80.5     2.5 0.00011   19.9   9.9  177   14-199    29-222 (290)
 36 3jtm_A Formate dehydrogenase,   80.0     2.6 0.00011   19.8   4.9  157   15-177    32-231 (351)
 37 3lkb_A Probable branched-chain  79.7     2.7 0.00011   19.8   9.2  109   97-206   124-243 (392)
 38 3l6u_A ABC-type sugar transpor  79.5     2.7 0.00011   19.7   8.2  205   13-223    28-254 (293)
 39 3bbl_A Regulatory protein of L  78.7     2.9 0.00012   19.6  10.2  181   12-200    27-226 (287)
 40 1ydg_A Trp repressor binding p  77.2     2.1 8.8E-05   20.4   3.7   58    1-58      7-88  (211)
 41 1sg0_A NRH dehydrogenase [quin  76.9     1.3 5.4E-05   21.7   2.6   31    1-31      3-41  (230)
 42 3hcw_A Maltose operon transcri  76.4     3.4 0.00014   19.2   6.2  178   15-200    34-230 (295)
 43 2h0a_A TTHA0807, transcription  73.6       4 0.00017   18.8  10.7  176   14-199    20-217 (276)
 44 3n0w_A ABC branched chain amin  72.5     4.2 0.00018   18.6   6.3  142   47-190    72-222 (379)
 45 1ccw_A Protein (glutamate muta  72.2     4.3 0.00018   18.6   7.4   96  128-230    20-132 (137)
 46 3kke_A LACI family transcripti  69.4     4.9 0.00021   18.2   8.5  178   14-200    36-235 (303)
 47 2d0i_A Dehydrogenase; structur  69.0       5 0.00021   18.1   5.3  204    1-231     3-252 (333)
 48 3miz_A Putative transcriptiona  69.0       5 0.00021   18.1   5.1  180   13-199    34-234 (301)
 49 2fep_A Catabolite control prot  68.5     5.2 0.00022   18.1   8.1  180   13-200    36-233 (289)
 50 1id1_A Putative potassium chan  67.8     5.3 0.00022   18.0   7.0   74  156-229    60-138 (153)
 51 1vme_A Flavoprotein; TM0755, s  67.5     4.1 0.00017   18.7   3.3  111  115-227   264-401 (410)
 52 3gv0_A Transcriptional regulat  66.6     5.7 0.00024   17.8   9.2  175   14-199    31-225 (288)
 53 3f0h_A Aminotransferase; RER07  66.1     5.8 0.00024   17.8   4.4   57    2-58     97-154 (376)
 54 1t5b_A Acyl carrier protein ph  65.8     5.8 0.00025   17.7   5.0   13   46-58     84-96  (201)
 55 3geb_A EYES absent homolog 2;   64.1     6.3 0.00026   17.5   4.3   46  185-230   224-271 (274)
 56 1byk_A Protein (trehalose oper  62.7     6.7 0.00028   17.4   5.6  193   13-220    22-225 (255)
 57 3kbo_A Glyoxylate/hydroxypyruv  62.4     6.8 0.00029   17.3   9.4   65  114-178   137-205 (315)
 58 3d8u_A PURR transcriptional re  61.7       7 0.00029   17.3   9.1  176   14-200    24-219 (275)
 59 2a9v_A GMP synthase; NP_394403  61.5     5.7 0.00024   17.8   3.2   48    1-56     14-62  (212)
 60 3p0r_A Azoreductase; structura  60.4     7.4 0.00031   17.1   4.8   13   46-58     90-102 (211)
 61 3huu_A Transcription regulator  60.1     7.4 0.00031   17.1   5.8  179   14-200    48-240 (305)
 62 2vk2_A YTFQ, ABC transporter p  60.0     7.5 0.00031   17.1   8.5  203   13-223    22-253 (306)
 63 2yxb_A Coenzyme B12-dependent   59.3     7.7 0.00032   17.0   6.2  106  116-228    18-139 (161)
 64 3g1w_A Sugar ABC transporter;   59.3     7.7 0.00032   17.0  11.0  202   15-223    26-247 (305)
 65 1d4a_A DT-diaphorase, quinone   59.1     5.5 0.00023   17.9   2.7   22   12-33     22-43  (273)
 66 3fwz_A Inner membrane protein   58.0     8.1 0.00034   16.9   8.0   95  128-229    39-138 (140)
 67 2rgy_A Transcriptional regulat  58.0     8.1 0.00034   16.9   8.9  178   14-199    29-226 (290)
 68 3f2v_A General stress protein   56.3     8.6 0.00036   16.7   3.3   57    2-58      3-68  (192)
 69 2gk3_A Putative cytoplasmic pr  56.1     7.7 0.00032   17.0   3.1   46   10-56     40-85  (256)
 70 1j4a_A D-LDH, D-lactate dehydr  55.6     8.9 0.00037   16.7   8.5  168    1-176     2-209 (333)
 71 1m1n_A Nitrogenase molybdenum-  55.0     9.1 0.00038   16.6   9.9  192    9-215   231-440 (491)
 72 3h2s_A Putative NADH-flavin re  53.7     9.5  0.0004   16.5   4.2   29    1-29      1-30  (224)
 73 3aek_A Light-independent proto  52.8     9.9 0.00041   16.4  13.9  198    3-212   188-398 (437)
 74 5nul_A Flavodoxin; electron tr  51.2     9.7 0.00041   16.4   3.0   50    1-57      1-54  (138)
 75 3ew7_A LMO0794 protein; Q8Y8U8  51.2      10 0.00044   16.2   4.5   29    1-29      1-30  (221)
 76 3brq_A HTH-type transcriptiona  50.9      11 0.00044   16.2  10.0  177   14-198    42-236 (296)
 77 2g1u_A Hypothetical protein TM  50.8      11 0.00045   16.2   5.7  102  114-216    17-137 (155)
 78 2vy9_A Anti-sigma-factor antag  50.0     4.5 0.00019   18.4   1.1   61  170-230    53-116 (123)
 79 2z9v_A Aspartate aminotransfer  48.0      12 0.00049   15.9   3.0   31    2-32     85-115 (392)
 80 2p5y_A UDP-glucose 4-epimerase  46.8      12 0.00052   15.8   3.9   29    1-29      1-30  (311)
 81 2c5a_A GDP-mannose-3', 5'-epim  46.3      13 0.00053   15.8   4.2   29    1-29     30-59  (379)
 82 3keg_A FMN-dependent NADH-azor  46.0      13 0.00053   15.7   5.4   14   45-58     84-97  (212)
 83 1w2w_B 5-methylthioribose-1-ph  43.6      13 0.00054   15.7   2.6   32    2-33      6-40  (191)
 84 3hg7_A D-isomer specific 2-hyd  42.9      14 0.00059   15.4   6.8   66  114-179   138-207 (324)
 85 3fvw_A Putative NAD(P)H-depend  42.4      14  0.0006   15.4   3.7   28    2-29      4-38  (192)
 86 1vl0_A DTDP-4-dehydrorhamnose   42.0      13 0.00056   15.6   2.5   30    1-30     13-43  (292)
 87 2pk3_A GDP-6-deoxy-D-LYXO-4-he  41.4      15 0.00063   15.3   4.2   30    1-30     13-43  (321)
 88 3l4b_C TRKA K+ channel protien  41.2      15 0.00063   15.3   4.7   95    1-95      1-119 (218)
 89 3fij_A LIN1909 protein; 11172J  41.0      15 0.00064   15.3   2.7   41   13-58     31-71  (254)
 90 1dbq_A Purine repressor; trans  39.3      16 0.00068   15.1   6.9  180   13-199    27-224 (289)
 91 2zki_A 199AA long hypothetical  39.3      13 0.00054   15.7   2.1   47   12-58     21-80  (199)
 92 2fz5_A Flavodoxin; alpha/beta   39.1      16 0.00068   15.1   3.3   40   11-57     16-55  (137)
 93 3ecs_A Translation initiation   38.7      16 0.00069   15.0   3.1   97  114-217   120-231 (315)
 94 1p90_A NAFY protein, hypotheti  37.7      17 0.00072   14.9   3.5   34  196-229    75-108 (145)
 95 2pzm_A Putative nucleotide sug  37.4      17 0.00073   14.9   3.5   29    1-29     21-50  (330)
 96 1udb_A Epimerase, UDP-galactos  37.3      17 0.00073   14.9   4.2   29    1-29      1-30  (338)
 97 2hmt_A YUAA protein; RCK, KTN,  37.2      17 0.00073   14.9   6.7   75  156-230    59-138 (144)
 98 2iss_D Glutamine amidotransfer  37.1      17 0.00073   14.9   5.1   45    1-56     21-65  (208)
 99 1vb5_A Translation initiation   36.9      18 0.00074   14.9   3.4  102  115-218   109-220 (276)
100 3ha2_A NADPH-quinone reductase  36.7      13 0.00053   15.7   1.7   56    1-58      1-61  (177)
101 2nac_A NAD-dependent formate d  36.6      18 0.00075   14.8   7.0  157   15-177    59-258 (393)
102 3k4h_A Putative transcriptiona  36.4      18 0.00075   14.8   7.9  180   14-200    34-230 (292)
103 3ko8_A NAD-dependent epimerase  36.1      18 0.00076   14.8   4.2   29    1-29      1-30  (312)
104 1usg_A Leucine-specific bindin  35.7      18 0.00077   14.8   8.9   98   97-195   119-223 (346)
105 3npg_A Uncharacterized DUF364   35.7      18 0.00077   14.8   7.7  141   74-229    82-231 (249)
106 3m2p_A UDP-N-acetylglucosamine  35.5      19 0.00078   14.7   4.2   29    1-29      3-32  (311)
107 3cs3_A Sugar-binding transcrip  35.3      19 0.00078   14.7  11.8  169   14-199    29-214 (277)
108 1t0i_A YLR011WP; FMN binding p  35.0      19 0.00079   14.7   4.9   58    1-58      1-94  (191)
109 1iuk_A Hypothetical protein TT  34.5      19 0.00081   14.6   2.8   49  165-213    69-121 (140)
110 1xrs_B D-lysine 5,6-aminomutas  33.2      20 0.00085   14.5   3.0  115  116-231   120-259 (262)
111 1lss_A TRK system potassium up  31.5      22 0.00091   14.3   6.6   28    1-28      5-32  (140)
112 1lk5_A D-ribose-5-phosphate is  30.9      22 0.00093   14.3   3.9   14  157-170   190-203 (229)
113 3hhe_A Ribose-5-phosphate isom  30.8      22 0.00093   14.3   4.9   43   47-89     40-88  (255)
114 1wdi_A Hypothetical protein TT  30.5      22 0.00094   14.2   7.3   88  114-209   175-268 (345)
115 2pln_A HP1043, response regula  30.4      23 0.00095   14.2   7.8   27  117-143    19-46  (137)
116 3e3m_A Transcriptional regulat  29.9      23 0.00097   14.2  11.6   99  101-200   173-288 (355)
117 1e5d_A Rubredoxin\:oxygen oxid  29.7      23 0.00097   14.1   8.0  110  113-227   249-385 (402)
118 3dqp_A Oxidoreductase YLBE; al  28.6      24   0.001   14.0   3.7   29    1-29      1-30  (219)
119 1req_A Methylmalonyl-COA mutas  28.2      25   0.001   14.0   7.0  100  126-230   611-720 (727)
120 3fro_A GLGA glycogen synthase;  27.7      25  0.0011   13.9   4.8   29    1-29      3-41  (439)
121 1qp8_A Formate dehydrogenase;   27.4      25  0.0011   13.9   2.7   64  114-177   122-185 (303)
122 3e8x_A Putative NAD-dependent   27.2      26  0.0011   13.9   4.5   29    1-29     22-51  (236)
123 3e61_A Putative transcriptiona  26.8      26  0.0011   13.8   9.5  171   14-198    29-213 (277)
124 2xij_A Methylmalonyl-COA mutas  26.7      26  0.0011   13.8   9.4  110  112-227   600-725 (762)
125 2h1q_A Hypothetical protein; Z  25.9      27  0.0011   13.7   5.9  110  114-230   139-253 (270)
126 3jvd_A Transcriptional regulat  25.4      28  0.0012   13.7   8.2   93  103-199   162-268 (333)
127 3lop_A Substrate binding perip  25.3      28  0.0012   13.7   9.0   98   98-197   124-228 (364)
128 3gfs_A FMN-dependent NADPH-azo  25.2      28  0.0012   13.7   2.1   25    1-26      1-29  (174)
129 1mio_A Nitrogenase molybdenum   24.6      29  0.0012   13.6   9.0  133   10-147   219-366 (533)
130 2o20_A Catabolite control prot  24.4      29  0.0012   13.6   7.9   98  101-199   166-276 (332)
131 1kew_A RMLB;, DTDP-D-glucose 4  24.2      29  0.0012   13.5   3.9   28    1-28      1-29  (361)
132 3k31_A Enoyl-(acyl-carrier-pro  24.2      29  0.0012   13.5   5.4   28    2-29     32-62  (296)
133 1l9x_A Gamma-glutamyl hydrolas  24.0      26  0.0011   13.9   1.5   41   14-58     56-96  (315)
134 1ycg_A Nitric oxide reductase;  23.9      29  0.0012   13.5   9.8   92  131-227   272-385 (398)
135 3bh1_A UPF0371 protein DIP2346  23.9      30  0.0012   13.5   4.5   56    2-57    114-181 (507)
136 2a5l_A Trp repressor binding p  23.8      30  0.0013   13.5   3.6   57    2-58      7-81  (200)
137 3ksm_A ABC-type sugar transpor  23.6      30  0.0013   13.5   8.8  198   14-223    21-247 (276)
138 2vzf_A NADH-dependent FMN redu  23.5      30  0.0013   13.5   4.1   14   20-33     31-44  (197)
139 2dc1_A L-aspartate dehydrogena  23.3      30  0.0013   13.4   6.0  129    1-153     1-135 (236)
140 1rtt_A Conserved hypothetical   23.3      30  0.0013   13.4   2.8   29    1-29      7-42  (193)
141 1q7r_A Predicted amidotransfer  22.4      32  0.0013   13.3   5.9   46    1-57     24-69  (219)
142 1m0s_A Ribose-5-phosphate isom  22.2      32  0.0013   13.3   5.7   43   48-90     20-66  (219)
143 2o8n_A APOA-I binding protein;  21.9      32  0.0014   13.3   4.1   59   86-144    46-111 (265)
144 1rli_A Trp repressor binding p  21.8      33  0.0014   13.3   4.4   57    1-58      4-81  (184)
145 3a11_A Translation initiation   21.4      33  0.0014   13.2   3.4  103  113-217   139-251 (338)
146 2ohh_A Type A flavoprotein FPR  21.4      33  0.0014   13.2  12.4  109  114-227   254-391 (404)
147 1mio_B Nitrogenase molybdenum   21.4      33  0.0014   13.2   9.4  198    9-213   181-407 (458)
148 3h7a_A Short chain dehydrogena  21.3      33  0.0014   13.2   4.2   28    3-30     10-38  (252)
149 3ktd_A Prephenate dehydrogenas  21.2      33  0.0014   13.2   5.1   27    3-29     11-37  (341)
150 2gek_A Phosphatidylinositol ma  20.8      34  0.0014   13.1   4.8   29    1-29     21-58  (406)
151 3dhn_A NAD-dependent epimerase  20.5      35  0.0015   13.1   4.5   29    1-29      5-34  (227)
152 1jay_A Coenzyme F420H2:NADP+ o  20.3      35  0.0015   13.1   4.2   29    1-29      1-30  (212)
153 3en0_A Cyanophycinase; serine   20.3      35  0.0015   13.1   2.9   57    9-65     70-127 (291)
154 2x4g_A Nucleoside-diphosphate-  20.1      35  0.0015   13.1   4.5   29    1-29     14-43  (342)
155 3oh8_A Nucleoside-diphosphate   20.1      35  0.0015   13.0   6.3   56    1-56    148-209 (516)
156 3egc_A Putative ribose operon   20.1      35  0.0015   13.0   9.6  179   13-199    28-223 (291)

No 1  
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00  E-value=4.9e-44  Score=282.24  Aligned_cols=227  Identities=16%  Similarity=0.205  Sum_probs=194.2

Q ss_pred             CEE-EEECCHHHH---HHHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHH------
Q ss_conf             938-985896886---99999999879829994210000078520---01644758799984846799988620------
Q gi|255764510|r    1 MYI-VITRPIKKA---LRTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANF------   67 (232)
Q Consensus         1 M~i-litRp~~~a---~~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~------   67 (232)
                      ||| |++||.++.   +.+...|+++|++++.+|+|+|+|.+.+.   .+.++.+||||||||+|||++|+..+      
T Consensus        22 ~~vlll~~~~~~~~~~d~~~~~L~~~G~~~~~~Pli~i~~~~~~~l~~~~~~l~~y~~iIFTS~naV~~f~~~l~~~~~~  101 (286)
T 1jr2_A           22 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKT  101 (286)
T ss_dssp             CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCH
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCEEEEECCHHHHHHHHHCHHHCCEEEEECHHHHHHHHHHHHHHCCC
T ss_conf             08999778987666548999999988997899899888838758999987283115789997869999999999873664


Q ss_pred             ----------CCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf             ----------0136300041589999764101223544454567899986422012777538972156756201468984
Q gi|255764510|r   68 ----------CRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIE  137 (232)
Q Consensus        68 ----------~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~  137 (232)
                                +...+++|+|++|++++++.|+....+..++++.+.+++...   ...+++++++||+.++++|.+.|++
T Consensus       102 ~~~~~~l~~~~~~~~i~aVG~~Ta~~L~~~G~~~~~~~~~~ae~L~~~i~~~---~~~~~~iL~~~g~~~~~~L~~~L~~  178 (286)
T 1jr2_A          102 EVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICSR---ESSALPLLFPCGNLKREILPKALKD  178 (286)
T ss_dssp             HHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCSCCSCSSHHHHHHHHHTS---CCCSSCEEEEESCGGGCCHHHHHHT
T ss_pred             CHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH---CCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf             0124555430147859998779999999869910067888999999999875---2689759986056650789999984


Q ss_pred             CCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHH----CCEEEEECCHHHHHHHHHCCC
Q ss_conf             698256768875046899988999862---3783899807899999997135440----580399718899999997699
Q gi|255764510|r  138 HKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLPLPAK----ISAAFLCLSNNIASAIPASYK  210 (232)
Q Consensus       138 ~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~----~~~~~~~ig~~tA~~~~~~g~  210 (232)
                      .|+.|+++++|++++.+...+.+...+   +.+|+|+||||++|+.|++++....    .+++++|||++||+++++.|+
T Consensus       179 ~G~~v~~~~vY~t~~~~~~~~~~~~~l~~~~~~d~VvFtSps~v~~f~~~l~~~~~~~~~~~~i~aIG~~Ta~~l~~~G~  258 (286)
T 1jr2_A          179 KGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGL  258 (286)
T ss_dssp             TTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESSHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCC
T ss_conf             79855699887221487421889999873268729999398999999999987303243681899989999999998699


Q ss_pred             CEEEECCCCCHHHHHHHHHH
Q ss_conf             66998799998899999861
Q gi|255764510|r  211 NVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       211 ~~~~va~~p~~~~ll~al~~  230 (232)
                      +++++|+.|+.++|+++|.+
T Consensus       259 ~~~iva~~pt~e~Ll~aI~~  278 (286)
T 1jr2_A          259 PVSCTAESPTPQALATGIRK  278 (286)
T ss_dssp             CCSEECSSSSHHHHHHHHHH
T ss_pred             CCEEEECCCCHHHHHHHHHH
T ss_conf             73799797897999999999


No 2  
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00  E-value=3.7e-42  Score=270.95  Aligned_cols=229  Identities=14%  Similarity=0.114  Sum_probs=195.5

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCC-CCCCCCCCEEEEECHHHHHHHHHHH---CCCCCEECC
Q ss_conf             938985896886999999998798299942100000785200-1644758799984846799988620---013630004
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVF-LAMQQSYGAIAITSSESLSTLPANF---CRHTPIFAI   76 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~-~~~~~~~d~iiftS~~av~~~~~~~---~~~~~~~~v   76 (232)
                      ||||||||.+++.+++..|+++|++++++|+++++|.+.... +..+.+||||||||++||+++....   ..+.+++|+
T Consensus         2 ~~IlitRp~~~~~~l~~~L~~~G~~~~~~Pli~i~~~~~~~~~l~~l~~~d~iIftS~~av~~~~~~~~~~~~~~~~~av   81 (240)
T 3mw8_A            2 MKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAV   81 (240)
T ss_dssp             CCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEES
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             79999085788899999999889959994776667240309998520248999998889999999987763468859998


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf             15899997641012235444545678999864220127775389721567562014689846982567688750468999
Q gi|255764510|r   77 GEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP  156 (232)
Q Consensus        77 g~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~  156 (232)
                      |+.|++++.+.|+...............+ .........+.++++++|..+++.+.+.|+..|+.|+++++|++++....
T Consensus        82 G~~Ta~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~~~~~~~~~~l~~~l~~~g~~v~~~~~Y~~~~~~~~  160 (240)
T 3mw8_A           82 GDATADALALQGITAERSPADSQATEGLL-TLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLD  160 (240)
T ss_dssp             SHHHHHHHHHTTCCCEECC---CCGGGGG-GCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCC
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCC
T ss_conf             38999999985997643676304788875-04554125787589853776632578999867986999987555458756


Q ss_pred             HHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             88999862--37838998078999999971354405----8039971889999999769966998799998899999861
Q gi|255764510|r  157 ETTMKNLL--QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       157 ~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      .......+  +.+|+|+|||++++++|++++..+..    +.+++|+|++||+++++.||++++++++|+.++|++||..
T Consensus       161 ~~~~~~~~~~~~~d~v~f~S~~~v~~~~~~~~~~~~~~~~~~~~~~ig~~~a~~~~~~G~~~v~va~~p~~~~l~~al~~  240 (240)
T 3mw8_A          161 APASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVTNAGAANQAAVLDALGM  240 (240)
T ss_dssp             HHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSHHHHHHHHHTTCCCEEECSSSSHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCC
T ss_conf             58999999828998999789999999999855531577619989998899999999759981688999898999998676


No 3  
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00  E-value=2.1e-42  Score=272.44  Aligned_cols=223  Identities=15%  Similarity=0.082  Sum_probs=185.7

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCC----CCCCCCCCEEEEECHHHHHHHHHHH---------
Q ss_conf             938985896886999999998798299942100000785200----1644758799984846799988620---------
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVF----LAMQQSYGAIAITSSESLSTLPANF---------   67 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~----~~~~~~~d~iiftS~~av~~~~~~~---------   67 (232)
                      |||+||||+ ++++++.+|+++|++++.+|++++++++++..    ...+++|||+||||+|||++|+...         
T Consensus        34 ~ri~vtr~r-qa~~l~~lle~~G~~~i~~P~i~i~~~~~~~~~~~~~~~l~~~dwivFTS~ngV~~f~~~l~~~~~d~r~  112 (286)
T 3d8t_A           34 MRIAYAGLR-RKEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEG  112 (286)
T ss_dssp             CEEEECCSS-CHHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHH
T ss_pred             CEEEEECCC-HHHHHHHHHHHCCCEEEEECCEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHHHH
T ss_conf             368880615-1899999999769939981263147289756799999761589999996868999999999974956888


Q ss_pred             -CCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEE
Q ss_conf             -0136300041589999764101223544454567899986422012777538972156756201468984698256768
Q gi|255764510|r   68 -CRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVID  146 (232)
Q Consensus        68 -~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~  146 (232)
                       ..+.+++|+|++|++++++.|......+.+.++.+.+.+    .  ...+.++++.++.++++|.+.|++.|+.|++++
T Consensus       113 ~l~~~kiaAvG~kTa~aL~~~Gl~~d~~pe~~ae~Ll~~l----~--~~~~~~~v~~~g~~~~~L~~~L~~~G~~V~~v~  186 (286)
T 3d8t_A          113 PLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLL----P--QGRGVAALQLYGKPLPLLENALAERGYRVLPLM  186 (286)
T ss_dssp             HHHHSEEEESSHHHHHHHHHTTCCCSEECSSSGGGGGGGC----C--CCCSEEEEECSSSCCHHHHHHHHHTTCEEEEEC
T ss_pred             HHCCCEEEEECHHHHHHHHHCCCCCEECCCCHHHHHHHHH----H--HCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEE
T ss_conf             7449879999969999999769981678955399999977----4--069789997489882789999997899878997


Q ss_pred             EEEECCCCCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-------CCEEEEECCHHHHHHHHHCCCCEEEECC
Q ss_conf             875046899988999862--3783899807899999997135440-------5803997188999999976996699879
Q gi|255764510|r  147 CYYSQDIAYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-------ISAAFLCLSNNIASAIPASYKNVVTVAC  217 (232)
Q Consensus       147 vY~~~~~~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-------~~~~~~~ig~~tA~~~~~~g~~~~~va~  217 (232)
                      +|++++.+...+.+...+  +++|+|+|||+++|++|++++....       .++.++||||.||+++++.|++++++++
T Consensus       187 ~Y~t~~~~~~~~~l~~~l~~~~vD~V~FtS~s~v~~f~~~~~~~~~l~~~l~~~~~v~aIGp~Ta~al~~~Gi~~~v~pe  266 (286)
T 3d8t_A          187 PYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDE  266 (286)
T ss_dssp             SEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHHHHTTTSEEEEESHHHHHHHHHTTCCCSEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEEC
T ss_conf             99971787426899999745884099974999999999987652235787437978999899999999985998569718


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             9998899999861
Q gi|255764510|r  218 FPKETSLLKLLPL  230 (232)
Q Consensus       218 ~p~~~~ll~al~~  230 (232)
                      .|+.++|+++|++
T Consensus       267 ~~t~~~Lv~al~~  279 (286)
T 3d8t_A          267 TERLGSLLQGFKR  279 (286)
T ss_dssp             SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9998999999999


No 4  
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00  E-value=3.1e-39  Score=253.41  Aligned_cols=223  Identities=15%  Similarity=0.066  Sum_probs=183.2

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCC----CCCCCCCEEEEECHHHHHHHHHHHC--------
Q ss_conf             9389858968869999999987982999421000007852001----6447587999848467999886200--------
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFL----AMQQSYGAIAITSSESLSTLPANFC--------   68 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~----~~~~~~d~iiftS~~av~~~~~~~~--------   68 (232)
                      |||++|.++ +++.+..+|+++|++++.+|++++++++.....    .....|||+||||+|||++|+....        
T Consensus         9 ~r~~~~~~r-~~e~~~~lle~~G~~pi~~P~i~i~~~p~~~~~~~~~~~~~~~D~vifTS~n~V~~~~~~l~~~g~~~~~   87 (261)
T 1wcw_A            9 VRVAYAGLR-RKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEG   87 (261)
T ss_dssp             CEEEECCST-THHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHH
T ss_pred             CEEEECCHH-HHHHHHHHHHHCCCEEEECCHHHEECCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHH
T ss_conf             289861323-2899999999779949980546626589214578999732799999997989999999999873940777


Q ss_pred             --CCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEE
Q ss_conf             --136300041589999764101223544454567899986422012777538972156756201468984698256768
Q gi|255764510|r   69 --RHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVID  146 (232)
Q Consensus        69 --~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~  146 (232)
                        .+.+++|+|++|++++.+.|+.....+.+.++.   ++.. ..  ...+.+++++++.++++|.+.|++.|+.|.+++
T Consensus        88 ~l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~~~s~~---l~~~-l~--~~~~~~~~~~~~~~~~~L~~~L~~~G~~V~~v~  161 (261)
T 1wcw_A           88 PLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKS---LLPL-LP--QGRGVAALQLYGKPLPLLENALAERGYRVLPLM  161 (261)
T ss_dssp             HHHHSEEEESSHHHHHHHHHTTCCCSEECSSSHHH---HGGG-SC--CCCEEEEEECCSSCCHHHHHHHHHTTEEEEEEC
T ss_pred             HHCCCEEEEECHHHHHHHHHCCCCCEECCCCCHHH---HHHH-HC--CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEE
T ss_conf             84398799999899999997799855479731589---9987-50--489589997289881789999997899899998


Q ss_pred             EEEECCCCCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-------CCEEEEECCHHHHHHHHHCCCCEEEECC
Q ss_conf             875046899988999862--3783899807899999997135440-------5803997188999999976996699879
Q gi|255764510|r  147 CYYSQDIAYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-------ISAAFLCLSNNIASAIPASYKNVVTVAC  217 (232)
Q Consensus       147 vY~~~~~~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-------~~~~~~~ig~~tA~~~~~~g~~~~~va~  217 (232)
                      +|++++.+.....+...+  +++|+|+|||++++++|++++....       ..+.++||||.|++++++.|++++++++
T Consensus       162 ~Y~t~~~~~~~~~l~~~l~~~~~D~V~ftS~s~v~~f~~~~~~~~~l~~~l~~~~~v~aIGp~Ta~al~~~G~~~~~~~~  241 (261)
T 1wcw_A          162 PYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDE  241 (261)
T ss_dssp             SEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHHHHHHHHTSEEEEESHHHHHHHHHTTCCCSEEEC
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEECC
T ss_conf             99983686456899998744781199957999999999986542045787427978999899999999986998579759


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             9998899999861
Q gi|255764510|r  218 FPKETSLLKLLPL  230 (232)
Q Consensus       218 ~p~~~~ll~al~~  230 (232)
                      .|+.++|+++|++
T Consensus       242 ~~~~~~lv~al~~  254 (261)
T 1wcw_A          242 TERLGSLLQGFKR  254 (261)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9998999999999


No 5  
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=100.00  E-value=4.6e-32  Score=210.38  Aligned_cols=200  Identities=17%  Similarity=0.172  Sum_probs=157.4

Q ss_pred             CEEEECCEEEECCCC----CC----CCCCCCCCCEEEEECHHHHHHHHHHH--------CCCCCEECCCHHHHHHHHHHC
Q ss_conf             299942100000785----20----01644758799984846799988620--------013630004158999976410
Q gi|255764510|r   25 IPVMMPLSYFIHDRE----SV----FLAMQQSYGAIAITSSESLSTLPANF--------CRHTPIFAIGEASACLARQKG   88 (232)
Q Consensus        25 ~~i~~Pli~i~~~~~----~~----~~~~~~~~d~iiftS~~av~~~~~~~--------~~~~~~~~vg~~t~~~~~~~~   88 (232)
                      +++..+..+|.|.+.    ..    ...++.+||||||||+|||++++...        .++.+++|+|++|++++++.|
T Consensus         6 ~~~~~~~~~i~~~~~~~l~~i~~~~~~~~l~~yd~iIfTS~naV~~~~~~l~~~~~~~~~~~~~i~aVG~~Ta~~l~~~G   85 (229)
T 3p9z_A            6 EIVWVHSQRIAPYKTLILNEFCYYPLELDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDHH   85 (229)
T ss_dssp             CEEEESSSCCTTSEEECCEEEEECCCCSCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHTT
T ss_pred             EEEEECCCEECCCCCEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHC
T ss_conf             17884461635766311300431777638554999999888999999999876444312269859999799999999709


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCC
Q ss_conf             1223544454567899986422012777538972156756201468984698256768875046899988999862-378
Q gi|255764510|r   89 FTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNA  167 (232)
Q Consensus        89 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~  167 (232)
                      +.....+.....   +.+.+......++++++++||..++++|.+.|.++|++|+++++|++++.+........+. +++
T Consensus        86 ~~~~~~~~~~~~---~~L~~~~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~  162 (229)
T 3p9z_A           86 FKVAFMGEKAHG---KEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEK  162 (229)
T ss_dssp             CCBCCCCC------------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTT
T ss_pred             CCCCCCCCCHHH---HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             955315643068---89999765422797699974765507899999866997135778773288779899999855899


Q ss_pred             CEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             38998078999999971354405803997188999999976996699879999889999986
Q gi|255764510|r  168 DAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       168 d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      |+|+|||++++++|++.+... .+.+++|||++||+++++.|++ +.+++.|+.++|++++.
T Consensus       163 ~~I~f~S~ssv~~f~~~~~~~-~~~~vi~IG~~ta~~l~~~g~~-~~v~~~ps~~~li~~a~  222 (229)
T 3p9z_A          163 SILIFTAISHAKAFLHYFEFL-ENYTAISIGNTTALYLQEQGIP-SYIAKKPSLEACLELAL  222 (229)
T ss_dssp             CEEEECSHHHHHHHHHHSCCC-TTCEEEESSHHHHHHHHHTTCC-EEECSSSSHHHHHHHHH
T ss_pred             CEEEECCHHHHHHHHHHHHCC-CCCEEEEECHHHHHHHHHCCCC-EEECCCCCHHHHHHHHH
T ss_conf             889954999999999973033-7979999999999999976995-69849999899999999


No 6  
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.13  E-value=2e-10  Score=80.53  Aligned_cols=106  Identities=16%  Similarity=0.126  Sum_probs=90.0

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEE
Q ss_conf             75389721567562014689846982567688750468999889998623783899807899999997135440580399
Q gi|255764510|r  116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFL  195 (232)
Q Consensus       116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~  195 (232)
                      |.+|++.+..+....+.+.|++.|+.+...++-+.++.+.....+. .+.+.|+++|+|+.+++.|++.+.....+.+++
T Consensus         1 G~~IlitRp~~~~~~l~~~L~~~G~~~~~~Pli~i~~~~~~~~~l~-~l~~~d~iIftS~~av~~~~~~~~~~~~~~~~~   79 (240)
T 3mw8_A            1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLD-ELSRADILIFISTSAVSFATPWLKDQWPKATYY   79 (240)
T ss_dssp             CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHH-HHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEE
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHH-HHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEE
T ss_conf             9799990857888999999998899599947766672403099985-202489999988899999999877634688599


Q ss_pred             ECCHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf             718899999997699669987999988
Q gi|255764510|r  196 CLSNNIASAIPASYKNVVTVACFPKET  222 (232)
Q Consensus       196 ~ig~~tA~~~~~~g~~~~~va~~p~~~  222 (232)
                      |+|+.|++++++.|+.+...+......
T Consensus        80 avG~~Ta~~l~~~g~~~~~~~~~~~~~  106 (240)
T 3mw8_A           80 AVGDATADALALQGITAERSPADSQAT  106 (240)
T ss_dssp             ESSHHHHHHHHHTTCCCEECC---CCG
T ss_pred             EECHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf             983899999998599764367630478


No 7  
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.12  E-value=1.4e-10  Score=81.57  Aligned_cols=113  Identities=19%  Similarity=0.174  Sum_probs=89.6

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH--HHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC--
Q ss_conf             7753897215675620146898469825676887504689998--899986237838998078999999971354405--
Q gi|255764510|r  115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE--TTMKNLLQNADAILFYARSSVLYFFSLPLPAKI--  190 (232)
Q Consensus       115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~--~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~--  190 (232)
                      =+.+|++.+.. ..+.+.+.|++.|+.+..+++=+.++.++..  +.....+++.||++|||+.+|+.|++.+...+.  
T Consensus        32 f~~ri~vtr~r-qa~~l~~lle~~G~~~i~~P~i~i~~~~~~~~~~~~~~~l~~~dwivFTS~ngV~~f~~~l~~~~~d~  110 (286)
T 3d8t_A           32 FTMRIAYAGLR-RKEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDL  110 (286)
T ss_dssp             -CCEEEECCSS-CHHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHCCCEEEEECCEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHH
T ss_conf             77368880615-18999999997699399812631472897567999997615899999968689999999999749568


Q ss_pred             -----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             -----803997188999999976996699879999889999986
Q gi|255764510|r  191 -----SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       191 -----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                           +.+++|+|+.|++++++.|+.+..+++ .+.++|++.+.
T Consensus       111 r~~l~~~kiaAvG~kTa~aL~~~Gl~~d~~pe-~~ae~Ll~~l~  153 (286)
T 3d8t_A          111 EGPLAKAFRLARGAKAARALKEAGLPPHAVGD-GTSKSLLPLLP  153 (286)
T ss_dssp             HHHHHHSEEEESSHHHHHHHHHTTCCCSEECS-SSGGGGGGGCC
T ss_pred             HHHHCCCEEEEECHHHHHHHHHCCCCCEECCC-CHHHHHHHHHH
T ss_conf             88744987999996999999976998167895-53999999774


No 8  
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.08  E-value=4.6e-10  Score=78.37  Aligned_cols=113  Identities=17%  Similarity=0.102  Sum_probs=87.5

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC--CCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC---
Q ss_conf             753897215675620146898469825676887504689--998899986237838998078999999971354405---
Q gi|255764510|r  116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA--YPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKI---  190 (232)
Q Consensus       116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~--~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~---  190 (232)
                      +.++. ++|....+.+...|++.|+.+...++=+.++.+  ...+.+....++.||++|||+.+|+.|++.+...+.   
T Consensus         8 ~~r~~-~~~~r~~e~~~~lle~~G~~pi~~P~i~i~~~p~~~~~~~~~~~~~~~D~vifTS~n~V~~~~~~l~~~g~~~~   86 (261)
T 1wcw_A            8 AVRVA-YAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLE   86 (261)
T ss_dssp             CCEEE-ECCSTTHHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCH
T ss_pred             CCEEE-ECCHHHHHHHHHHHHHCCCEEEECCHHHEECCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHH
T ss_conf             82898-61323289999999977994998054662658921457899973279999999798999999999987394077


Q ss_pred             ----CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             ----8039971889999999769966998799998899999861
Q gi|255764510|r  191 ----SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       191 ----~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                          +.+++|+|+.||+++++.|+.++.+++ .+.+.+++.+..
T Consensus        87 ~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~-~~s~~l~~~l~~  129 (261)
T 1wcw_A           87 GPLAKAFRLARGAKAARALKEAGLPPHAVGD-GTSKSLLPLLPQ  129 (261)
T ss_dssp             HHHHHSEEEESSHHHHHHHHHTTCCCSEECS-SSHHHHGGGSCC
T ss_pred             HHHCCCEEEEECHHHHHHHHHCCCCCEECCC-CCHHHHHHHHCC
T ss_conf             7843987999998999999977998554797-315899987504


No 9  
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.03  E-value=2.1e-09  Score=74.46  Aligned_cols=114  Identities=10%  Similarity=0.009  Sum_probs=88.5

Q ss_pred             CCCEEEEECCCCCC----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCH
Q ss_conf             77538972156756----201468984698256768875046899988999862---37838998078999999971354
Q gi|255764510|r  115 PQKPLIYLGGKPRN----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLPLP  187 (232)
Q Consensus       115 ~~~~vl~~~g~~~~----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~  187 (232)
                      +..++++++.....    +.+.+.|++.|+.+..+++=+.++..  .+.+...+   .+.|+|+|||+.+|++|++.+..
T Consensus        20 ~~~~vlll~~~~~~~~~~d~~~~~L~~~G~~~~~~Pli~i~~~~--~~~l~~~~~~l~~y~~iIFTS~naV~~f~~~l~~   97 (286)
T 1jr2_A           20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS--LPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQ   97 (286)
T ss_dssp             --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC--HHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCEEEEECC--HHHHHHHHHCHHHCCEEEEECHHHHHHHHHHHHH
T ss_conf             83089997789876665489999999889978998998888387--5899998728311578999786999999999987


Q ss_pred             HH-------------CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf             40-------------580399718899999997699669987999988999998614
Q gi|255764510|r  188 AK-------------ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLR  231 (232)
Q Consensus       188 ~~-------------~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~  231 (232)
                      .+             .+.+++|+|+.||+++++.|++++ +++..+-++|++.|...
T Consensus        98 ~~~~~~~~~~l~~~~~~~~i~aVG~~Ta~~L~~~G~~~~-~~~~~~ae~L~~~i~~~  153 (286)
T 1jr2_A           98 NNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTE-GETCGNAEKLAEYICSR  153 (286)
T ss_dssp             TTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCS-CCSCSSHHHHHHHHHTS
T ss_pred             HCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEE-CCCCCCHHHHHHHHHHH
T ss_conf             366401245554301478599987799999998699100-67888999999999875


No 10 
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=98.60  E-value=1.4e-07  Score=63.56  Aligned_cols=108  Identities=8%  Similarity=0.028  Sum_probs=83.1

Q ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCC---CCCCCCCCEEEEECHHHHHHHHHHH--CCCCCEECC
Q ss_conf             38985896886999999998798299942100000785200---1644758799984846799988620--013630004
Q gi|255764510|r    2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVF---LAMQQSYGAIAITSSESLSTLPANF--CRHTPIFAI   76 (232)
Q Consensus         2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~---~~~~~~~d~iiftS~~av~~~~~~~--~~~~~~~~v   76 (232)
                      +||+.|.......+.+.|.+.|+++..+++.+.++......   .......|+|+|||+.+|+.|....  .....++|+
T Consensus       112 ~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~I~f~S~ssv~~f~~~~~~~~~~~vi~I  191 (229)
T 3p9z_A          112 SVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAISHAKAFLHYFEFLENYTAISI  191 (229)
T ss_dssp             EEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHHHHHHHHHHSCCCTTCEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             69997476550789999986699713577877328877989999985589988995499999999997303379799999


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             158999976410122354445456789998642
Q gi|255764510|r   77 GEASACLARQKGFTQIFHGKDNSINLAKIIVEQ  109 (232)
Q Consensus        77 g~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  109 (232)
                      |+.|++++.+.|+........+.+.+.+++...
T Consensus       192 G~~ta~~l~~~g~~~~v~~~ps~~~li~~a~~l  224 (229)
T 3p9z_A          192 GNTTALYLQEQGIPSYIAKKPSLEACLELALSL  224 (229)
T ss_dssp             SHHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHH
T ss_conf             999999999769956984999989999999997


No 11 
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=96.80  E-value=0.0027  Score=37.74  Aligned_cols=167  Identities=16%  Similarity=0.148  Sum_probs=90.9

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCE---ECC
Q ss_conf             9389858968869999999987982999421000007852001644758799984846799-988620013630---004
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPI---FAI   76 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~---~~v   76 (232)
                      ||||+|-|.+  +...+.|++.|+++...|-..     .+.....+.++|+++.++..-+. -+..... ..++   ...
T Consensus         6 mkili~~~~~--~~~~~~l~~~~~~v~~~~~~~-----~ee~~~~i~~~d~li~~~~~~i~~~~l~~~~-~Lk~I~~~~~   77 (313)
T 2ekl_A            6 VKALITDPID--EILIKTLREKGIQVDYMPEIS-----KEELLNIIGNYDIIVVRSRTKVTKDVIEKGK-KLKIIARAGI   77 (313)
T ss_dssp             CEEEECSCCC--HHHHHHHHHTTCEEEECTTCC-----HHHHHHHGGGCSEEEECSSSCBCHHHHHHCT-TCCEEEECSS
T ss_pred             EEEEEECCCC--HHHHHHHHHCCCEEEECCCCC-----HHHHHHHHCCCCEEEECCCCCCCHHHHHHCC-CCEEEEECCC
T ss_conf             0899979999--999999997798899889999-----9999998389819998889988999995198-9779988981


Q ss_pred             CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-----------------------HHCCCCCCEEEEECCCCCCCCH
Q ss_conf             158--999976410122354445456789998642-----------------------2012777538972156756201
Q gi|255764510|r   77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-----------------------KVLFTPQKPLIYLGGKPRNFHF  131 (232)
Q Consensus        77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----------------------~~~~~~~~~vl~~~g~~~~~~l  131 (232)
                      |-.  -...+.+.+......+...+...++.....                       ......++++.++.-......+
T Consensus        78 G~d~id~~~~~~~~i~v~~~~g~~~~~vaE~~~~~~l~l~r~~~~~~~~~~~g~~~~~~~~~L~gktvgIiG~G~IG~~v  157 (313)
T 2ekl_A           78 GLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKV  157 (313)
T ss_dssp             CCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHH
T ss_pred             CCCCCCCHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHH
T ss_conf             64516510155437015637987719999999999998751437788875348855567766799999998979899999


Q ss_pred             HHHHHHCCCEEEEEEEEEECCCCC-------CHHHHHHHHCCCCEEEEECHHHH
Q ss_conf             468984698256768875046899-------98899986237838998078999
Q gi|255764510|r  132 EDYLIEHKIPLRVIDCYYSQDIAY-------PETTMKNLLQNADAILFYARSSV  178 (232)
Q Consensus       132 ~~~L~~~g~~v~~~~vY~~~~~~~-------~~~~~~~~~~~~d~i~f~S~~~v  178 (232)
                      .+.|+..|..|.   .|.......       ....+.+++.+.|+|++.-|.+-
T Consensus       158 a~~l~~fg~~v~---~~~~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~plt~  208 (313)
T 2ekl_A          158 GIIANAMGMKVL---AYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSK  208 (313)
T ss_dssp             HHHHHHTTCEEE---EECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCT
T ss_pred             HHHHHHCCCEEE---EECCCCCHHHHCCCCCCCCCHHHHHHHCCEEEECCCCCC
T ss_conf             999986698689---726877566630256555889999864999985263332


No 12 
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8}
Probab=96.56  E-value=0.0025  Score=37.94  Aligned_cols=166  Identities=12%  Similarity=0.118  Sum_probs=89.5

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH--HHHHHHHCCCCCE---EC
Q ss_conf             938985896886999999998798299942100000785200164475879998484679--9988620013630---00
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL--STLPANFCRHTPI---FA   75 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av--~~~~~~~~~~~~~---~~   75 (232)
                      ||||||++.++  ...+.|+++|.++...+-   ...+.+.....+.++|+++.++..-+  +.+. ... ..++   ..
T Consensus         1 MkIli~~~~~~--~~~~~L~~~~~~v~~~~~---~~~~~~e~~~~~~~~d~ii~~~~~~i~~~~l~-~~p-nLK~I~~~~   73 (311)
T 2cuk_A            1 MRVLVTRTLPG--KALDRLRERGLEVEVHRG---LFLPKAELLKRVEGAVGLIPTVEDRIDAEVMD-RAK-GLKVIACYS   73 (311)
T ss_dssp             CEEEESSCCSS--STTHHHHHTTCEEEECCS---SCCCHHHHHHHHTTCSEEECCTTSCBCHHHHH-HST-TCCEEECSS
T ss_pred             CEEEEECCCCH--HHHHHHHHCCCEEEEECC---CCCCHHHHHHHCCCCEEEEECCCCCCCHHHHH-CCC-CCEEEEECC
T ss_conf             98999178999--999999847998998179---98998999987499859998999987999993-399-985999888


Q ss_pred             CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHH-------------------HHH---------CCCCCCEEEEECCC
Q ss_conf             4158--99997641012235444545678999864-------------------220---------12777538972156
Q gi|255764510|r   76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVE-------------------QKV---------LFTPQKPLIYLGGK  125 (232)
Q Consensus        76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~-------------------~~~---------~~~~~~~vl~~~g~  125 (232)
                      +|-.  -..++.+.+......+...+...++....                   .+.         ....++++.++.-.
T Consensus        74 aG~D~Id~~~~~~~gi~v~n~~~~~~~~vaE~~~~lll~l~r~i~~~~~~~~~~~w~~~~~~~~~g~~l~gk~vgIiG~G  153 (311)
T 2cuk_A           74 VGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMG  153 (311)
T ss_dssp             SCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             CCCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf             30375077789866946741799740667777766668877153178999871753335754545532469989998078


Q ss_pred             CCCCCHHHHHHHCCCEEEEEEEEEECCCC--CCHHHHHHHHCCCCEEEEECHH
Q ss_conf             75620146898469825676887504689--9988999862378389980789
Q gi|255764510|r  126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIA--YPETTMKNLLQNADAILFYARS  176 (232)
Q Consensus       126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~--~~~~~~~~~~~~~d~i~f~S~~  176 (232)
                      .....+.+.|+..|..|.   .|.....+  .....+.+++.+.|+|++.-|.
T Consensus       154 ~IG~~~a~~l~~fg~~v~---~~~~~~~~~~~~~~~l~ell~~sDiv~~~~pl  203 (311)
T 2cuk_A          154 RIGQAVAKRALAFGMRVV---YHARTPKPLPYPFLSLEELLKEADVVSLHTPL  203 (311)
T ss_dssp             HHHHHHHHHHHHTTCEEE---EECSSCCSSSSCBCCHHHHHHHCSEEEECCCC
T ss_pred             HHHHHHHHHHHHCCCEEE---EECCCCCCCCCCCCCHHHHHHHCCEEEECCCC
T ss_conf             899999999985899899---98898444687667999999769999993889


No 13 
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3}
Probab=96.29  E-value=0.017  Score=32.99  Aligned_cols=166  Identities=12%  Similarity=0.148  Sum_probs=84.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE---ECC
Q ss_conf             938985896886999999998798299942100000785200164475879998484679-9988620013630---004
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI---FAI   76 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~---~~v   76 (232)
                      |||||+.|.+  +...+.|++.|+++...+...     .+.....+.++|+++..+...+ +.+..... ..++   ...
T Consensus         4 mKILi~~~i~--~~~~~~L~~~~~~v~~~~~~~-----~e~l~~~l~dad~li~~~~~~i~~~~l~~~p-~LK~I~~~~a   75 (307)
T 1wwk_A            4 MKVLVAAPLH--EKAIQVLKDAGLEVIYEEYPD-----EDRLVELVKDVEAIIVRSKPKVTRRVIESAP-KLKVIARAGV   75 (307)
T ss_dssp             CEEEECSCCC--HHHHHHHHHTTCEEEECSSCC-----HHHHHHHSTTCSEEEESSCSCBCHHHHTTCT-TCCEEEESSS
T ss_pred             CEEEEECCCC--HHHHHHHHHCCCEEEECCCCC-----HHHHHHHHCCCCEEEEECCCCCCHHHHHCCC-CCEEEEECCC
T ss_conf             8899968999--999999986799899789999-----9999998589949999389987999994299-9879998885


Q ss_pred             CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH-----------------HH--------HHCCCCCCEEEEECCCCCCC
Q ss_conf             158--9999764101223544454567899986-----------------42--------20127775389721567562
Q gi|255764510|r   77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIV-----------------EQ--------KVLFTPQKPLIYLGGKPRNF  129 (232)
Q Consensus        77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~-----------------~~--------~~~~~~~~~vl~~~g~~~~~  129 (232)
                      |-.  -...+.+.+......+...+...++...                 ..        ......++++.++.......
T Consensus        76 G~d~id~~~~~~~~I~v~n~~g~~~~~VAE~~l~~iL~~~R~~~~~~~~~~~~~~~~~~~~~~~l~~~~vgIiG~G~IG~  155 (307)
T 1wwk_A           76 GLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGY  155 (307)
T ss_dssp             CCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHH
T ss_pred             CCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEECCCCEEEEECCCHHHH
T ss_conf             26751789897339467458985589999999999999985233678999839865457774404698999979288899


Q ss_pred             CHHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHHH
Q ss_conf             0146898469825676887504689998-------89998623783899807899
Q gi|255764510|r  130 HFEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~~  177 (232)
                      .+.+.|+..|..|   ..|...+.+...       ..+.+++.+.|+|++.-|.+
T Consensus       156 ~va~~l~~fg~~v---~~~~~~~~~~~~~~~~~~~~~l~~ll~~sDiv~l~lplt  207 (307)
T 1wwk_A          156 QVAKIANALGMNI---LLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLV  207 (307)
T ss_dssp             HHHHHHHHTTCEE---EEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCS
T ss_pred             HHHHHHHHCCCEE---EEECCCCCHHHHHHCCCEECCHHHHHHHCCEEEECCCCC
T ss_conf             9999998779989---998799976667642944678999997599999978998


No 14 
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=96.11  E-value=0.029  Score=31.60  Aligned_cols=172  Identities=12%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE--CCC
Q ss_conf             938985896886999999998798299942100000785200164475879998484679-99886200136300--041
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF--AIG   77 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~--~vg   77 (232)
                      ||||++.+.+  +.-.+.|++.|++.+...--.   ++.+.....+.++|++++.|..-+ +.+.....+-.-+.  .+|
T Consensus         5 mKIli~~~i~--~~~~~~L~~~g~~~v~~~~~~---~~~eel~~~i~d~d~iivrs~~~v~~~~l~~~~~Lk~I~~~g~G   79 (404)
T 1sc6_A            5 IKFLLVEGVH--QKALESLRAAGYTNIEFHKGA---LDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIG   79 (404)
T ss_dssp             CCEEECSCCC--HHHHHHHHHTTCCCEEECSSC---CCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSC
T ss_pred             CEEEECCCCC--HHHHHHHHHCCCEEEEECCCC---CCHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCC
T ss_conf             8899918999--999999997899899968999---99999998708976999878998599999508987499994753


Q ss_pred             HH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H------HCCCCCCEEEEECCCCCCCC
Q ss_conf             58--999976410122354445456789998642-------------------2------01277753897215675620
Q gi|255764510|r   78 EA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K------VLFTPQKPLIYLGGKPRNFH  130 (232)
Q Consensus        78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~------~~~~~~~~vl~~~g~~~~~~  130 (232)
                      -.  --.++.+.|......+...+...++...-.                   +      .....++.+.+.........
T Consensus        80 ~d~Id~~~a~~~GI~V~n~pg~n~~aVaE~~l~l~l~~~R~~~~~~~~~~~~~w~~~~~~~~el~gktlgIiG~G~IG~~  159 (404)
T 1sc6_A           80 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQ  159 (404)
T ss_dssp             CTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHH
T ss_pred             CCCHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHH
T ss_conf             36410030103320146315754441167887754211001355555654276322356554443036899503331033


Q ss_pred             HHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHH
Q ss_conf             1468984698256768875046899--9889998623783899807899
Q gi|255764510|r  131 FEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       131 l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      +.+.+...|..|..+..|.......  ....+.+++...|.|++.-|.+
T Consensus       160 va~~~~~~gm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt  208 (404)
T 1sc6_A          160 LGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN  208 (404)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred             HHHHCCCCCCEEEECCCCCCCCCCCCEECCHHHHHHHHCCEEEECCCCC
T ss_conf             3310034573686324446531135311030555452287999727888


No 15 
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=95.95  E-value=0.01  Score=34.31  Aligned_cols=163  Identities=13%  Similarity=0.075  Sum_probs=83.7

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCE-ECCCHH
Q ss_conf             9389858968869999999987982999421000007852001644758799984846799988620013630-004158
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI-FAIGEA   79 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~-~~vg~~   79 (232)
                      |||+++...+...+   .+++.| ++...|--       +.....+.++|.++..|..-+..-.....+ .++ ...+.+
T Consensus         4 MKIl~d~~ip~~~e---~~~~~~-ev~~~~~~-------~~~~e~l~daD~livrs~~~i~~~ll~~~~-Lk~I~~~~~G   71 (381)
T 3oet_A            4 MKILVDENMPYARE---LFSRLG-EVKAVPGR-------PIPVEELNHADALMVRSVTKVNESLLSGTP-INFVGTATAG   71 (381)
T ss_dssp             CEEEEETTSTTHHH---HHTTSS-EEEEECC----------CHHHHTTCSEEEECTTSCBSHHHHTTSC-CCEEEESSSC
T ss_pred             EEEEECCCCCHHHH---HHHHCC-CEEEECCC-------CCCHHHHCCCCEEEECCCCCCCHHHHCCCC-CEEEEECCCC
T ss_conf             09998689845999---986489-88981899-------789988389829998999888799975899-8499989802


Q ss_pred             H----HHHHHHHCCCCCCCCCCCHHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEE
Q ss_conf             9----999764101223544454567899986-------42201277753897215675620146898469825676887
Q gi|255764510|r   80 S----ACLARQKGFTQIFHGKDNSINLAKIIV-------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCY  148 (232)
Q Consensus        80 t----~~~~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY  148 (232)
                      +    ..++.+.|......+...+...++...       ........++++.++........+.+.|+..|..|..+.-|
T Consensus        72 ~D~iD~~~~~~~gI~v~n~~g~~a~aVAe~~l~~~l~~~~~~~~~~~~ktvGIiG~G~IG~~va~~l~~~g~~V~~~d~~  151 (381)
T 3oet_A           72 TDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPP  151 (381)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             CCCCCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             45007888960943899567646899999999987899874135541868844376757899999875478579998663


Q ss_pred             EECCC-CCCHHHHHHHHCCCCEEEEECH
Q ss_conf             50468-9998899986237838998078
Q gi|255764510|r  149 YSQDI-AYPETTMKNLLQNADAILFYAR  175 (232)
Q Consensus       149 ~~~~~-~~~~~~~~~~~~~~d~i~f~S~  175 (232)
                      ..... ......+.+++.+.|.|.+--|
T Consensus       152 ~~~~~~~~~~~~l~~ll~~sDiislh~p  179 (381)
T 3oet_A          152 RAARGDEGDFRTLDELVQEADVLTFHTP  179 (381)
T ss_dssp             HHHTTCCSCBCCHHHHHHHCSEEEECCC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCEEEECC
T ss_conf             2334433445779999974783145326


No 16 
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens}
Probab=95.71  E-value=0.031  Score=31.37  Aligned_cols=166  Identities=13%  Similarity=0.024  Sum_probs=89.0

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCC--CEECCC
Q ss_conf             938985896886999999998798299942100000785200164475879998484679-99886200136--300041
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHT--PIFAIG   77 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~--~~~~vg   77 (232)
                      ||||||.+..  ....+.|++.|++++..|-+.     .+.....+.++|+++..+..-+ +-+.....+-.  -.+.+|
T Consensus        27 ~kvLi~~~~~--~~~~~~L~~~g~ev~~~~~~~-----~eel~~~~~d~d~li~~~~~~i~~~vl~~~~~LK~I~~~g~G   99 (335)
T 2g76_A           27 RKVLISDSLD--PCCRKILQDGGLQVVEKQNLS-----KEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTG   99 (335)
T ss_dssp             CEEEECSCCC--HHHHHHHHHHTCEEEECCSCC-----HHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSS
T ss_pred             CEEEEECCCC--HHHHHHHHHCCCEEEECCCCC-----HHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCC
T ss_conf             7699917999--899999997898999799989-----999999838984999868988799999319997699966854


Q ss_pred             HH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------------HHCCCCCCEEEEECCCCCCCC
Q ss_conf             58--999976410122354445456789998642-------------------------201277753897215675620
Q gi|255764510|r   78 EA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------------KVLFTPQKPLIYLGGKPRNFH  130 (232)
Q Consensus        78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------------~~~~~~~~~vl~~~g~~~~~~  130 (232)
                      -.  -..++.+.+......+...+...++...-.                         ......++++.++.-......
T Consensus       100 ~D~iD~~~a~~~gI~v~n~p~~~~~~VAE~~i~~iL~l~R~i~~~~~~~~~g~w~~~~~~g~eL~gktvgIiG~G~IG~~  179 (335)
T 2g76_A          100 VDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGRE  179 (335)
T ss_dssp             CTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHH
T ss_pred             CCCCCHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHH
T ss_conf             56266999986790574279876314799999999999616799999998098765676762356888999898789999


Q ss_pred             HHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHH
Q ss_conf             146898469825676887504689998-------8999862378389980789
Q gi|255764510|r  131 FEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARS  176 (232)
Q Consensus       131 l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~  176 (232)
                      +.+.++..|..|.   .|.....+...       ..+.+++.+.|+|++.-|.
T Consensus       180 va~~l~~fg~~v~---~yd~~~~~~~~~~~~~~~~~l~~ll~~sDivslh~pl  229 (335)
T 2g76_A          180 VATRMQSFGMKTI---GYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPL  229 (335)
T ss_dssp             HHHHHHTTTCEEE---EECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCC
T ss_pred             HHHHHCCCCCEEE---CCCCCCCHHHHHHHCCCHHHHHHHHHHCCEEEECCCC
T ss_conf             9998566898786---6788755034555332043487765318999970688


No 17 
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1}
Probab=95.71  E-value=0.085  Score=28.77  Aligned_cols=177  Identities=10%  Similarity=0.099  Sum_probs=91.1

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCC
Q ss_conf             99999998798299942100000785200164475879998484679998862001363000415899997641012235
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIF   93 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~   93 (232)
                      .+...+.+.|++++..+.-+-...........-...|++|+.+...-.-....+....|+.+++....    ......+.
T Consensus        32 ~i~~~a~~~g~~v~l~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~iPvV~~~~~~~----~~~~~~V~  107 (289)
T 3k9c_A           32 QIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDTDELGALADRVPALVVARASG----LPGVGAVR  107 (289)
T ss_dssp             HHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCHHHHHHHHTTSCEEEESSCCS----STTSEEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCC----CCCCCEEE
T ss_conf             99999998599899993899889999999999729988999505699699999995799899960578----99888785


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHC--
Q ss_conf             44454567899986422012777538972156756------2014689846982567688750468999889998623--
Q gi|255764510|r   94 HGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN------FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQ--  165 (232)
Q Consensus        94 ~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~--  165 (232)
                      .   +.......+.+... ..+.+++.++.+.+..      .-+.+.+.+.|..+....++...........+..+++  
T Consensus       108 ~---D~~~a~~~a~~~l~-~~G~~~i~~i~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  183 (289)
T 3k9c_A          108 G---DDVAGITLAVDHLT-ELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMP  183 (289)
T ss_dssp             E---CHHHHHHHHHHHHH-HTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSS
T ss_pred             C---CHHHHHHHHHHHHH-HHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf             4---76999999999998-7188741442587663157788877789998199977221115565677999999999734


Q ss_pred             -CCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC
Q ss_conf             -7838998078999999971354405----80399718
Q gi|255764510|r  166 -NADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS  198 (232)
Q Consensus       166 -~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig  198 (232)
                       .+++++.++...+..+.+.+...+.    ++.+++++
T Consensus       184 ~~~~ai~~~~d~~A~g~~~~l~~~g~~ip~dv~vi~~d  221 (289)
T 3k9c_A          184 TPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYD  221 (289)
T ss_dssp             SCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             58660121458999999999998599999754420248


No 18 
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=95.44  E-value=0.029  Score=31.54  Aligned_cols=164  Identities=14%  Similarity=0.028  Sum_probs=86.6

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCE---ECC
Q ss_conf             9389858968869999999987982999421000007852001644758799984846799-988620013630---004
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPI---FAI   76 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~---~~v   76 (232)
                      ||||+....+...+   .+.+.| ++..+|--++       ....+.++|.++..|..-+. .+.... + .++   ..+
T Consensus         1 MKIl~d~nip~~~~---~f~~~~-~v~~~~~~~~-------~~~~l~daD~livrs~t~v~~~ll~~~-~-Lk~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPVVDA---FFADQG-SIRRLPGRAI-------DRAALAEVDVLLVRSVTEVSRAALAGS-P-VRFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTTHHH---HHGGGS-EEEEECGGGC-------STTTTTTCSEEEECTTSCBCHHHHTTS-C-CCEEEECSS
T ss_pred             CEEEECCCCHHHHH---HHHCCC-EEEECCCCCC-------CHHHHCCCEEEEECCCCCCCHHHHCCC-C-CEEEEECCC
T ss_conf             97998789868999---860189-6998489868-------988838966999778988899997589-9-859988872


Q ss_pred             CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE
Q ss_conf             158--9999764101223544454567899986-------4220127775389721567562014689846982567688
Q gi|255764510|r   77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIV-------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC  147 (232)
Q Consensus        77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v  147 (232)
                      |-.  -..++.+.|......+...+...++...       +.......++++.++........+.+.|+..|..|..+..
T Consensus        68 G~D~ID~~~~~~~gI~v~n~pg~na~aVAE~vl~~~l~~~r~~~~~l~~~tvGIvG~G~IG~~va~~l~~~g~~v~~~d~  147 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP  147 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             22403899998789579957986808999999983335666523053077883879881399999999864962102477


Q ss_pred             EEECCCC-CCHHHHHHHHCCCCEEEEECHHH
Q ss_conf             7504689-99889998623783899807899
Q gi|255764510|r  148 YYSQDIA-YPETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       148 Y~~~~~~-~~~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      |...... .....+.+.+...|+|++.-|.+
T Consensus       148 ~~~~~~~~~~~~~l~e~l~~~Divslh~plt  178 (380)
T 2o4c_A          148 PRQAREPDGEFVSLERLLAEADVISLHTPLN  178 (380)
T ss_dssp             HHHHHSTTSCCCCHHHHHHHCSEEEECCCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHCCCEEEEECCCC
T ss_conf             4222344232256888640078899956688


No 19 
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=94.92  E-value=0.072  Score=29.19  Aligned_cols=173  Identities=9%  Similarity=-0.036  Sum_probs=81.4

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCC-CCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE---EC
Q ss_conf             93898589688699999999879-8299942100000785200164475879998484679-9988620013630---00
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMG-YIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI---FA   75 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G-~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~---~~   75 (232)
                      |||+||++.++.  ....|++.+ +++...+  .-.+.+.+.......++|+|+..+..-+ +.+........++   ..
T Consensus         9 mKIli~~~i~~~--~~~~L~~~~~~~v~~~~--~~~~~~~~el~~~~~~ad~li~~~~~~i~~~~l~~~~~~LK~I~~~~   84 (330)
T 2gcg_A            9 MKVFVTRRIPAE--GRVALARAADCEVEQWD--SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMS   84 (330)
T ss_dssp             EEEEESSCCCHH--HHHHHHHCTTEEEEECC--SSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESS
T ss_pred             CEEEEECCCCHH--HHHHHHHCCCCEEEECC--CCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCEEEEECC
T ss_conf             189996888999--99999852994899778--99999999999871898599985899859999970089954998998


Q ss_pred             CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----------------------------HCCCCCCEEEEECCC
Q ss_conf             4158--9999764101223544454567899986422----------------------------012777538972156
Q gi|255764510|r   76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQK----------------------------VLFTPQKPLIYLGGK  125 (232)
Q Consensus        76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----------------------------~~~~~~~~vl~~~g~  125 (232)
                      +|-.  -..++.+.+......+...+...++...-..                            .....++.+.+....
T Consensus        85 aG~d~id~~~~~~~gi~v~~~~~~~~~~vae~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gi~g~g  164 (330)
T 2gcg_A           85 VGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLG  164 (330)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCS
T ss_pred             CCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf             54360179999867988997898423889999999998876323899999972996423432446742121059998013


Q ss_pred             CCCCCHHHHHHHCCCEEEEEEEEEECCCC-----CCHHHHHHHHCCCCEEEEECHHH
Q ss_conf             75620146898469825676887504689-----99889998623783899807899
Q gi|255764510|r  126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-----YPETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-----~~~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      .....+...+...+..+.....+......     .....+.+++...|+|+..-|.+
T Consensus       165 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sDivv~~lplt  221 (330)
T 2gcg_A          165 RIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLT  221 (330)
T ss_dssp             HHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred             CHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCEEEECCCCC
T ss_conf             011345532023464035541146844554432000020466613577899714688


No 20 
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=94.59  E-value=0.2  Score=26.51  Aligned_cols=170  Identities=13%  Similarity=0.036  Sum_probs=85.7

Q ss_pred             CEEEEECCHHHHHH-HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-----HHHHHHHHHCCCCCEE
Q ss_conf             93898589688699-99999987982999421000007852001644758799984846-----7999886200136300
Q gi|255764510|r    1 MYIVITRPIKKALR-TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-----SLSTLPANFCRHTPIF   74 (232)
Q Consensus         1 M~ilitRp~~~a~~-~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-----av~~~~~~~~~~~~~~   74 (232)
                      |||++.-..+.... +....++.|+++...|    .+++.+.......++|+++..+..     -.+.+.....+-.-..
T Consensus         1 MKIl~~~~~~~~~~~~e~~~~~~~~ev~~~~----~~~~~~e~~~~~~~~D~~i~~~~~~~~~~~l~~~~~l~lK~I~~~   76 (331)
T 1xdw_A            1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVP----DYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTR   76 (331)
T ss_dssp             CEEEECSCCTTTHHHHHHHGGGTCCEEEECS----CCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEES
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEC
T ss_conf             9899981585567999997656495899917----999989999986799789990788779999974520597099988


Q ss_pred             CCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H-------HCCCCCCEEEEECCCC
Q ss_conf             04158--999976410122354445456789998642-------------------2-------0127775389721567
Q gi|255764510|r   75 AIGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K-------VLFTPQKPLIYLGGKP  126 (232)
Q Consensus        75 ~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~-------~~~~~~~~vl~~~g~~  126 (232)
                      .+|-.  -..++.+.|......+...+...+|...-.                   +       .....++.+.+.....
T Consensus        77 ~aG~D~iD~~~~~~~gI~v~n~~g~~~~~VAE~~l~~iL~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vgi~G~G~  156 (331)
T 1xdw_A           77 TAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGR  156 (331)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSH
T ss_pred             CCCCCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEEECCCC
T ss_conf             83665007998973988999799988167999999999999877677655543135433355454143142999986676


Q ss_pred             CCCCHHHHHHHCCCEEEEEEEEEECCCCCC-----HHHHHHHHCCCCEEEEECHHH
Q ss_conf             562014689846982567688750468999-----889998623783899807899
Q gi|255764510|r  127 RNFHFEDYLIEHKIPLRVIDCYYSQDIAYP-----ETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~-----~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      ....+.+.|...|..+..   |.....+..     ...+.+++...|+|++.-|.+
T Consensus       157 ig~~~a~~l~~~~~~v~~---~~~~~~~~~~~~~~~~~l~~ll~~sDiv~~~~plt  209 (331)
T 1xdw_A          157 IGRVAAQIFHGMGATVIG---EDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYI  209 (331)
T ss_dssp             HHHHHHHHHHHTTCEEEE---ECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred             CCHHHHHHHHCCCCEEEC---CCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCC
T ss_conf             443789876446834630---44433334433013235777543315554346887


No 21 
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=94.58  E-value=0.14  Score=27.49  Aligned_cols=168  Identities=14%  Similarity=0.110  Sum_probs=86.8

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH--HHHHHHHCCCCC---EEC
Q ss_conf             938985896886999999998798299942100000785200164475879998484679--998862001363---000
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL--STLPANFCRHTP---IFA   75 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av--~~~~~~~~~~~~---~~~   75 (232)
                      .|||||+|.++.  ..++|++. ++++..+.-.  +.+.+.....+.++|+++.++..-+  +.+.. .....+   .+.
T Consensus         2 ~KIlit~~lp~~--~l~~L~~~-~ev~~~~~~~--~~~~~el~~~~~~~d~ii~~~~~~~~~e~l~~-~~~~LK~I~~~~   75 (320)
T 1gdh_A            2 KKILITWPLPEA--AMARARES-YDVIAHGDDP--KITIDEMIETAKSVDALLITLNEKCRKEVIDR-IPENIKCISTYS   75 (320)
T ss_dssp             CEEEESSCCCHH--HHHHHHTT-SEEEECCSTT--CCCHHHHHHHHTTCSEEEEETTSCBCHHHHHH-SCTTCCEEEEES
T ss_pred             CEEEECCCCCHH--HHHHHHCC-CCEEEECCCC--CCCHHHHHHHHCCCCEEEECCCCCCCHHHHHH-CCCCCCEEEECC
T ss_conf             789991789999--99998768-9499958999--99999999985898399987899979999971-668872899998


Q ss_pred             CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H---------HCCCCCCEEEEECCC
Q ss_conf             4158--999976410122354445456789998642-------------------2---------012777538972156
Q gi|255764510|r   76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K---------VLFTPQKPLIYLGGK  125 (232)
Q Consensus        76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~---------~~~~~~~~vl~~~g~  125 (232)
                      +|-.  -..++.+.+......+...+...++...-.                   +         .....++++.++...
T Consensus        76 ~G~D~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~~~~~~~~~~~~~g~~l~gk~vgIiG~G  155 (320)
T 1gdh_A           76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             EECCHHCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEEEC
T ss_conf             74451269999977999997899671999999999999975234666554432124655433425426259889998166


Q ss_pred             CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH---------HHHHHHHCCCCEEEEECHHH
Q ss_conf             75620146898469825676887504689998---------89998623783899807899
Q gi|255764510|r  126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE---------TTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~i~f~S~~~  177 (232)
                      .....+.+.|+..|..|   ..|.+...+...         ..+.+++...|+|++.-|.+
T Consensus       156 ~IG~~va~~l~~fg~~V---~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~D~v~~~~plt  213 (320)
T 1gdh_A          156 SIGQALAKRAQGFDMDI---DYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPST  213 (320)
T ss_dssp             HHHHHHHHHHHTTTCEE---EEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHCCCEE---EEECCCCCCHHHHHHCCCEECCCHHHHHHCCCEEEECCCCC
T ss_conf             69999999987428768---88668777545553126332377999962399899868998


No 22 
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=94.54  E-value=0.12  Score=27.76  Aligned_cols=173  Identities=17%  Similarity=0.159  Sum_probs=86.7

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEE-CCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCH
Q ss_conf             93898589688699999999879829994-2100000785200164475879998484679-998862001363000415
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMM-PLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGE   78 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~-Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~   78 (232)
                      ||||++.+..  ..-.+.|++.|++.+.. |-    +++.+.....+.++|++++.|..-+ +-+.....+-.-+...|.
T Consensus        16 ~KIL~~~~i~--~~~~~~l~~~g~~~v~~~~~----~~~~eel~~~i~~~d~iivrs~~~v~~~~l~~~~~Lk~I~~~ga   89 (416)
T 3k5p_A           16 INVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----ALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSV   89 (416)
T ss_dssp             SCEEECSCCC--HHHHHHHHHTTCCCEEECSS----CCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECSS
T ss_pred             CEEEEECCCC--HHHHHHHHHCCCEEEEECCC----CCCHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCEEEECCE
T ss_conf             8799938999--99999999789989997999----99999999872798199988899879999933999729998986


Q ss_pred             H----HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------------HHCCCCCCEEEEECCCCCCC
Q ss_conf             8----999976410122354445456789998642-------------------------20127775389721567562
Q gi|255764510|r   79 A----SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------------KVLFTPQKPLIYLGGKPRNF  129 (232)
Q Consensus        79 ~----t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------------~~~~~~~~~vl~~~g~~~~~  129 (232)
                      +    -..++.+.|......+...+...++...-.                         ......++.+.++.......
T Consensus        90 G~d~Id~~~~~~~gI~V~n~pg~na~aVAE~~i~~iL~l~R~i~~~~~~~~~~~w~~~~~~~~~l~~k~~giiG~G~iG~  169 (416)
T 3k5p_A           90 GTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGS  169 (416)
T ss_dssp             CCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHH
T ss_pred             ECCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEEEEECCCCCC
T ss_conf             21300699899789799976986622899999999886531025665454317711036676240460899981266421


Q ss_pred             CHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf             01468984698256768875046899--988999862378389980789999
Q gi|255764510|r  130 HFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSSVL  179 (232)
Q Consensus       130 ~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~  179 (232)
                      .....+...|..+..+..|.......  ....+.+++.+.|+|++.-|.+-+
T Consensus       170 ~va~~~~~~g~~v~~~~~~~~~~~~~~~~~~~L~ell~~sDiIslh~Plt~~  221 (416)
T 3k5p_A          170 QVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKS  221 (416)
T ss_dssp             HHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC---
T ss_pred             EEEEECCCCCCEEEEECCCCCCHHCCEEECCCHHHHHHHCCEEEECCCCCCC
T ss_conf             1123101355157763165440102312148999997528888871453002


No 23 
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=93.12  E-value=0.38  Score=24.87  Aligned_cols=168  Identities=14%  Similarity=0.060  Sum_probs=81.5

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE---CC
Q ss_conf             938985896886999999998798299942100000785200164475879998484679-99886200136300---04
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF---AI   76 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~---~v   76 (232)
                      +|||||++.++  ...+.|++. +++...+.-.  ..+.+.....+.++|+++..+..-+ +-+..... ..++.   ..
T Consensus         3 pKILvt~~l~~--~~l~~L~~~-~ev~v~~~~~--~~~~e~l~~~l~~~dali~~~~~~i~~e~l~~~p-~LK~I~~~~~   76 (334)
T 2dbq_A            3 PKVFITREIPE--VGIKMLEDE-FEVEVWGDEK--EIPREILLKKVKEVDALVTMLSERIDKEVFENAP-KLRIVANYAV   76 (334)
T ss_dssp             CEEEESSCCCH--HHHHHHHTT-SEEEECCCSS--CCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCT-TCCEEEESSS
T ss_pred             CEEEEECCCCH--HHHHHHHCC-CCEEEECCCC--CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHCCC-CCCEEEECCC
T ss_conf             78999598999--999998668-9299937998--8999999998489839998789998999994499-9839998886


Q ss_pred             CH--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------H------------HCCCCCCEEEEE
Q ss_conf             15--8999976410122354445456789998642--------------------2------------012777538972
Q gi|255764510|r   77 GE--ASACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------K------------VLFTPQKPLIYL  122 (232)
Q Consensus        77 g~--~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------~------------~~~~~~~~vl~~  122 (232)
                      |-  --..++.+.+......+...+...+|.....                    .            .....++++.++
T Consensus        77 G~d~id~~~~~~~~I~v~n~~g~~~~~VAE~~l~~iL~l~R~l~~~~~~~~~g~w~~~~~~~~~~~~~g~~L~g~~vgii  156 (334)
T 2dbq_A           77 GYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII  156 (334)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEE
T ss_pred             CCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             44500689998669653328987740448999999999865546889999808753355556754445510579989998


Q ss_pred             CCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHHH
Q ss_conf             15675620146898469825676887504689998-------89998623783899807899
Q gi|255764510|r  123 GGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       123 ~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~~  177 (232)
                      .-......+.+.|+..|..|   .+|.....+...       ..+.+++.+.|+|++.-|.+
T Consensus       157 G~G~IG~~va~~l~~fg~~v---~~~~~~~~~~~~~~~~~~~~~l~ell~~sDii~~~~plt  215 (334)
T 2dbq_A          157 GLGRIGQAIAKRAKGFNMRI---LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLT  215 (334)
T ss_dssp             CCSHHHHHHHHHHHHTTCEE---EEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCC
T ss_pred             EECHHHHHHHHHHHCCCCEE---EEECCCCCHHHHHHCCCEECCHHHHHHHCCEEEECCCCC
T ss_conf             17889999999976078789---973688733347652944578999986699999928997


No 24 
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z}
Probab=92.66  E-value=0.44  Score=24.46  Aligned_cols=180  Identities=13%  Similarity=0.070  Sum_probs=93.3

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEEC-CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             999999998798299942100000-7852001644758799984846799988620013630004158999976410122
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIH-DRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~-~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      ..+.+.++++|++++.++.-.-.. .........-...|++|+.+...-...........|+..++...    .......
T Consensus        28 ~gi~~~~~~~g~~l~v~~~~~~~~~e~~~~~~~~~~~vdgii~~~~~~~~~~~~~~~~~~p~V~~~~~~----~~~~~~~  103 (285)
T 3c3k_A           28 KGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNIIGAFPWVQCAEYD----PLSTVSS  103 (285)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHHTTSSEEEESSCC----TTSSSCE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCEEEECCCC----CCCCCCE
T ss_conf             999999998599899997899989999999998607732584146310489999986259889840457----8899998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf             354445456789998642201277753897215675620-------1468984698256768875046899988999862
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL  164 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~  164 (232)
                      +   ..+.......+.+.... .+.+++.++.|......       +.+.+.+.|..+....++.......-......++
T Consensus       104 V---~~D~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (285)
T 3c3k_A          104 V---SIDDVAASEYVVDQLVK-SGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLL  179 (285)
T ss_dssp             E---ECCHHHHHHHHHHHHHH-TTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHH
T ss_pred             E---EECHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9---96718889999999997-3995699982445664045767999999998599843121222114555789999887


Q ss_pred             ---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             ---37838998078999999971354405----8039971889
Q gi|255764510|r  165 ---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       165 ---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                         .++++++.++...+..+.+.+...+.    ++.+++++..
T Consensus       180 ~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vig~d~~  222 (285)
T 3c3k_A          180 KSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDGV  222 (285)
T ss_dssp             SSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred             HCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf             4179975377457799999999999849977843899823872


No 25 
>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=90.20  E-value=0.36  Score=24.98  Aligned_cols=52  Identities=6%  Similarity=0.026  Sum_probs=35.6

Q ss_pred             CEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             9389858--96886999999998798299942100000785200164475879998484
Q gi|255764510|r    1 MYIVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus         1 M~ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      ||||+.+  +.++...+.+.|++.|+++-..-.-+..+++     .++.+||++|++-.
T Consensus        13 ~rilviqh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p-----~~~~~~D~lii~GG   66 (239)
T 1o1y_A           13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLE-----RPLEEYSLVVLLGG   66 (239)
T ss_dssp             CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCS-----SCGGGCSEEEECCC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC-----CCHHHCCEEEECCC
T ss_conf             0899997988889779999999789969999888987787-----66322898998899


No 26 
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=86.87  E-value=0.71  Score=23.22  Aligned_cols=51  Identities=6%  Similarity=-0.050  Sum_probs=35.1

Q ss_pred             CE-EEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf             93-89858--9688699999999879829994210000078520016447587999848
Q gi|255764510|r    1 MY-IVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS   56 (232)
Q Consensus         1 M~-ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS   56 (232)
                      || |||.+  +.+....+.+.|++.|++.....+..-.+++     .++.+||++|++-
T Consensus         3 mk~vlv~qh~~~e~~g~~~~~l~~~g~~~~v~~~~~~~~~P-----~~~~~~dglii~G   56 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLP-----AEIRDCSGLAMMG   56 (250)
T ss_dssp             CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCC-----SCGGGSSEEEECC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC-----CCHHHCCEEEECC
T ss_conf             86499995799998139999998589979999789998787-----7763389899909


No 27 
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=86.81  E-value=0.35  Score=25.05  Aligned_cols=165  Identities=13%  Similarity=0.091  Sum_probs=80.9

Q ss_pred             CEEEEEC-CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE---EC
Q ss_conf             9389858-96886999999998798299942100000785200164475879998484679-9988620013630---00
Q gi|255764510|r    1 MYIVITR-PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI---FA   75 (232)
Q Consensus         1 M~ilitR-p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~---~~   75 (232)
                      |+||+|- |..+-..+.+.|...+.+....+   ....+    ...+.++|.|+.-+..-+ +-+..... ..++   ..
T Consensus         1 M~vl~~~~p~~~~~~~~e~l~~~~~~~~~~~---~~~~~----~~~~~~ad~i~~~~~~~~~~~~l~~~p-~Lk~I~~~~   72 (334)
T 2pi1_A            1 MNVLFTSVPQEDVPFYQEALKDLSLKIYTTD---VSKVP----ENELKKAELISVFVYDKLTEELLSKMP-RLKLIHTRS   72 (334)
T ss_dssp             CEEEECSCCTTHHHHHHHHTTTSEEEECSSC---GGGSC----HHHHHHCSEEEECTTSCBCHHHHTTCT-TCCEEEESS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHCCCEEEECC---CCCCC----HHHHCCCCEEEEECCCCCCHHHHHCCC-CCCEEEECC
T ss_conf             9799968872447689998864692799577---46388----878457879999588988999994599-870898888


Q ss_pred             CCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------------HHCCCCCCEEEEECCCCC
Q ss_conf             4158--999976410122354445456789998642--------------------------201277753897215675
Q gi|255764510|r   76 IGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------------KVLFTPQKPLIYLGGKPR  127 (232)
Q Consensus        76 vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------------~~~~~~~~~vl~~~g~~~  127 (232)
                      .|-.  -..++.+.|......+...+...++...-.                          ......++++.++.....
T Consensus        73 aG~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~l~~il~~~r~l~~~~~~~~~~~~~~~~~~~~~~l~g~~vgIiG~G~I  152 (334)
T 2pi1_A           73 VGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRI  152 (334)
T ss_dssp             SCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBCCGGGSEEEEECCSHH
T ss_pred             CCCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCHH
T ss_conf             50575486588739918995798580899999999988875233100221123553222343442105868999868989


Q ss_pred             CCCHHHHHHHCCCEEEEEEEEEECCCCC------CHHHHHHHHCCCCEEEEECHH
Q ss_conf             6201468984698256768875046899------988999862378389980789
Q gi|255764510|r  128 NFHFEDYLIEHKIPLRVIDCYYSQDIAY------PETTMKNLLQNADAILFYARS  176 (232)
Q Consensus       128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~------~~~~~~~~~~~~d~i~f~S~~  176 (232)
                      ...+.+.|+..|..+.   .|.....+.      ....+.+++.+.|+|+..-|.
T Consensus       153 G~~~a~~l~~~g~~v~---~~~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~lPl  204 (334)
T 2pi1_A          153 GSRVAMYGLAFGMKVL---CYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPY  204 (334)
T ss_dssp             HHHHHHHHHHTTCEEE---EECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCC
T ss_pred             HHHHHHHHHHCCCEEE---EECCCCCHHHHHCCCEECCHHHHHHHCCEEEECCCC
T ss_conf             9999998774585799---987865112453382544899998548978984789


No 28 
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=86.75  E-value=1.4  Score=21.52  Aligned_cols=171  Identities=9%  Similarity=0.001  Sum_probs=83.0

Q ss_pred             CEEEEECCHHHHH-HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH--HHHHHHHHCCCCCE---E
Q ss_conf             9389858968869-9999999879829994210000078520016447587999848467--99988620013630---0
Q gi|255764510|r    1 MYIVITRPIKKAL-RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES--LSTLPANFCRHTPI---F   74 (232)
Q Consensus         1 M~ilitRp~~~a~-~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a--v~~~~~~~~~~~~~---~   74 (232)
                      |||+++-..++.. .+.+.+++.|.++...+-..    . +.......++|.|+..+..-  -+.+........++   .
T Consensus         1 MKIl~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~d~d~ii~~~~~~~~~~~i~~~~~~nLK~I~~~   75 (333)
T 1dxy_A            1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFL----D-ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (333)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCC----C-TTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCC----C-HHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCEEEEEC
T ss_conf             9799980686069999998887698899917999----8-8999985899789995489889999973732698799989


Q ss_pred             CCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------------HHCCCCCCEEEEECCCC
Q ss_conf             04158--999976410122354445456789998642--------------------------20127775389721567
Q gi|255764510|r   75 AIGEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------------KVLFTPQKPLIYLGGKP  126 (232)
Q Consensus        75 ~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------------~~~~~~~~~vl~~~g~~  126 (232)
                      .+|-.  -..++.+.|......+...+...+|...-.                          ......++.+.+..+..
T Consensus        76 ~~G~D~ID~~~~~~~gI~v~n~~g~~a~aVAE~~l~~iL~l~R~~~~~~~~~~~g~~~~~~~~~~~~L~gk~vgI~G~G~  155 (333)
T 1dxy_A           76 NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH  155 (333)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH
T ss_pred             CCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf             82567459889962987999799848378999999999987540489999876165445566565114687788846776


Q ss_pred             CCCCHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHH
Q ss_conf             56201468984698256768875046899--988999862378389980789
Q gi|255764510|r  127 RNFHFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARS  176 (232)
Q Consensus       127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~  176 (232)
                      +...+...+...|..|..+.-|.......  ....+..++...|+|+..-|.
T Consensus       156 iG~~~a~~~~~fg~~V~~~~~~~~~~~~~~~~~~~l~~l~~~~Dvv~~~~pl  207 (333)
T 1dxy_A          156 IGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPG  207 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCC
T ss_pred             CCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHCCCCEEEEECCC
T ss_conf             4647777760389879986054234533213442356563045546640687


No 29 
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=85.25  E-value=1.6  Score=21.06  Aligned_cols=175  Identities=10%  Similarity=0.147  Sum_probs=89.0

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             9999999987982999421000007-852001644758799984846799988620013630004158999976410122
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      ..+.+.+++.|++.+.++.-.-... ........-...|+||+.+...-..+......+.|+..++....    ......
T Consensus        27 ~gi~~~~~~~gy~~~i~~~~~~~~~~~~~i~~l~~~~vdgiIl~~~~~~~~~~~~~~~~iPvV~~~~~~~----~~~~~~  102 (276)
T 3jy6_A           27 KGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDREMD----ACPWPQ  102 (276)
T ss_dssp             HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCCCT----TCSSCE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE
T ss_conf             9999999986999999948999899999999999669989999536896999999974999999767778----889888


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-H---HHHHHHCCCEEEEEEEEEECCCCCCH----HHHHHH
Q ss_conf             354445456789998642201277753897215675620-1---46898469825676887504689998----899986
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-F---EDYLIEHKIPLRVIDCYYSQDIAYPE----TTMKNL  163 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-l---~~~L~~~g~~v~~~~vY~~~~~~~~~----~~~~~~  163 (232)
                      +.   .+.......+.+.... .+.+++.++.+...... .   .+...+.........++   ......    ..+..+
T Consensus       103 V~---~d~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~  175 (276)
T 3jy6_A          103 VV---TDNFEAAKAATTAFRQ-QGYQHVVVLTSELELSRTRQERYRGILAAAQDVDVLEVS---ESSYNHSEVHQRLTQL  175 (276)
T ss_dssp             EE---CCHHHHHHHHHHHHHT-TTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEEEEEC---SSSCCHHHHHHHHHHH
T ss_pred             EE---ECHHHHHHHHHHHHHH-HCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHH
T ss_conf             99---6479987777788987-356621387057311013878999999998755975321---3567678899999998


Q ss_pred             H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC
Q ss_conf             2---37838998078999999971354405----80399718
Q gi|255764510|r  164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS  198 (232)
Q Consensus       164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig  198 (232)
                      +   .++|+|+.+|...+..+.+.+...+.    ++.++++.
T Consensus       176 l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~di~vi~~d  217 (276)
T 3jy6_A          176 ITQNDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFA  217 (276)
T ss_dssp             HHSSSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBC
T ss_pred             HHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             764014330100667999999999998699999947999988


No 30 
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=85.15  E-value=1.7  Score=21.03  Aligned_cols=76  Identities=12%  Similarity=0.129  Sum_probs=45.9

Q ss_pred             CHHHHHHH-HCCCCEEEEECHHHHHHH--HHHCCHHH-CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf             98899986-237838998078999999--97135440-580399718899999997699669987999988999998614
Q gi|255764510|r  156 PETTMKNL-LQNADAILFYARSSVLYF--FSLPLPAK-ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLR  231 (232)
Q Consensus       156 ~~~~~~~~-~~~~d~i~f~S~~~v~~~--~~~~~~~~-~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~  231 (232)
                      ..+.+..+ +.+.++++.+++.-..+.  ...+...+ ..+...+-.+..++.++..|...++.++.-..++|++.|.|.
T Consensus        59 ~~~~L~~~~i~~a~~vi~~~~~d~~n~~~~~~~k~~~~~~ii~~~~~~~~~~~l~~~G~~~vv~~~~~~~~~i~~~l~~~  138 (141)
T 3llv_A           59 DESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMDKIKKM  138 (141)
T ss_dssp             CHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHC
T ss_conf             88888666672388999981880999999999985589988999869889999997798999978999999999997400


No 31 
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=84.56  E-value=1.8  Score=20.87  Aligned_cols=178  Identities=12%  Similarity=0.074  Sum_probs=85.5

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf             99999999879829994210000078520016447587999848467999886200136300041589999764101223
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQI   92 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~   92 (232)
                      ..+.+.+.+.|++.+.+..-+-+..............|++|+.+......+.   ....++.+++.....   ......+
T Consensus        25 ~gi~~~a~~~g~~l~v~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~p~vv~~~~~~~---~~~~~~V   98 (280)
T 3gyb_A           25 QSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDIPDFTVP---DSLPPFVIAGTRITQ---ASTHDSV   98 (280)
T ss_dssp             HHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESCC-----------CCCEEEESCCCSS---SCSTTEE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH---HCCCCEEEECCCCCC---CCCCCEE
T ss_conf             9999999986998999968999899999999985698789960457307777---428978997366788---8889789


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-----CCHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH--
Q ss_conf             544454567899986422012777538972156756-----2014689846982567688750468999-88999862--
Q gi|255764510|r   93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN-----FHFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNLL--  164 (232)
Q Consensus        93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~-----~~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~~--  164 (232)
                      .   .+......++.+.... .+..++.++.+....     .-+.+.+.+.|........+ ....... ......++  
T Consensus        99 ~---~D~~~~~~~a~~~L~~-~G~~~i~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~  173 (280)
T 3gyb_A           99 A---NDDFRGAEIATKHLID-LGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYL-GPAVEHAGYTETLALLKE  173 (280)
T ss_dssp             E---ECHHHHHHHHHHHHHH-TTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCC-SCCCHHHHHHHHHHHHHH
T ss_pred             E---ECHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHC
T ss_conf             9---7689999999999997-2984676301232178999888877899729974201013-445377889999999853


Q ss_pred             -CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHH
Q ss_conf             -37838998078999999971354405----80399718899
Q gi|255764510|r  165 -QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNI  201 (232)
Q Consensus       165 -~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~t  201 (232)
                       .++|+|+..+-..+..+.+.+...+.    ++.+++++...
T Consensus       174 ~~~~~ai~~~~d~~a~g~~~~l~~~g~~iP~dv~vvg~d~~~  215 (280)
T 3gyb_A          174 HPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNTP  215 (280)
T ss_dssp             CTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCH
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf             899838995688999999999998799899876999989818


No 32 
>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=83.62  E-value=1.9  Score=20.63  Aligned_cols=141  Identities=12%  Similarity=0.003  Sum_probs=70.8

Q ss_pred             CCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             587999--848467999886200136300041589999764101223544454567899986422012777538972156
Q gi|255764510|r   48 SYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGK  125 (232)
Q Consensus        48 ~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~  125 (232)
                      ..+.|+  ++|..+..........+.+.+..+...............+............+...... ...+++.++..+
T Consensus        71 ~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~k~v~ii~~d  149 (375)
T 3i09_A           71 GLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVK-QGGKTWFFLTAD  149 (375)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHH-TTCCEEEEEEES
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH-CCCCEEEEECCC
T ss_conf             9769997256067788777787518630234212232346677873467504548999999988763-288689993588


Q ss_pred             -----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHHHCCHHHC
Q ss_conf             -----75620146898469825676887504689998899986-2378389980-78999999971354405
Q gi|255764510|r  126 -----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFSLPLPAKI  190 (232)
Q Consensus       126 -----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~~~~~~~~  190 (232)
                           ...+.+.+.+.+.|..+.....|..-. .+....+..+ ..++|+|++. ++.....|++.+...+.
T Consensus       150 ~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~Df~~~v~~i~~~~~d~V~~~~~~~~~~~~~~~~~~~G~  220 (375)
T 3i09_A          150 YAFGKALEKNTADVVKANGGKVLGEVRHPLSA-SDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGI  220 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-SCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTG
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             70666789999888873497489889605513-453248888762599899992667079999999997599


No 33 
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=83.54  E-value=1.6  Score=21.04  Aligned_cols=168  Identities=10%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCE--ECCC
Q ss_conf             9389858968869999999987982999421000007852001644758799984846799-988620013630--0041
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPI--FAIG   77 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~--~~vg   77 (232)
                      ++||++.|..  ..+.+.|++. ++++.+.-.   +.+.+.......++|+|+..+...+. .+.....+-.-+  +.+|
T Consensus        24 ~~VL~~~p~~--~~~~~~L~~~-~~v~~~~~~---~~~~~~l~~~~~~~daiv~~~~~~i~~e~l~~~p~LK~I~~~g~G   97 (333)
T 3ba1_A           24 IGVLMMCPMS--TYLEQELDKR-FKLFRYWTQ---PAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG   97 (333)
T ss_dssp             CEEEECSCCC--HHHHHHHHHH-SEEEEGGGC---SSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSC
T ss_pred             CEEEEECCCC--HHHHHHHHCC-CCEEECCCC---CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCEEEECCCC
T ss_conf             4289847999--7999998667-479971689---998899998756987999899999689999439976279889842


Q ss_pred             HH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-------------------H-------HCCCCCCEEEEECCCCCCC
Q ss_conf             58--999976410122354445456789998642-------------------2-------0127775389721567562
Q gi|255764510|r   78 EA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ-------------------K-------VLFTPQKPLIYLGGKPRNF  129 (232)
Q Consensus        78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------------~-------~~~~~~~~vl~~~g~~~~~  129 (232)
                      -.  -..++.+.|......+...+...+|...-.                   +       .....++++.++.-.....
T Consensus        98 ~D~ID~~~~~~~gI~V~n~pg~~~~~VAE~al~liLal~R~~~~~~~~~~~~~~~~~~~~~~~~l~gk~vgIiG~G~IG~  177 (333)
T 3ba1_A           98 LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGL  177 (333)
T ss_dssp             CTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHH
T ss_pred             CCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEECCCEEEEECCCHHHH
T ss_conf             25055888986897897089867899999999999987402245555542166453555455423599999988188999


Q ss_pred             CHHHHHHHCCCEEEEEEEEEECCCCCC----HHHHHHHHCCCCEEEEECHHH
Q ss_conf             014689846982567688750468999----889998623783899807899
Q gi|255764510|r  130 HFEDYLIEHKIPLRVIDCYYSQDIAYP----ETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~----~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      .+.+.+...|..|.   .|........    ...+.+++.+.|+|++.-|.+
T Consensus       178 ~va~~~~~fg~~v~---~~~~~~~~~~~~~~~~~l~ell~~sDvi~l~~Plt  226 (333)
T 3ba1_A          178 AVAERAEAFDCPIS---YFSRSKKPNTNYTYYGSVVELASNSDILVVACPLT  226 (333)
T ss_dssp             HHHHHHHTTTCCEE---EECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCC
T ss_pred             HHHHHHHCCCCEEE---EECCCCCHHHCCCCCCCHHHHHCCCCEEEEECCCC
T ss_conf             99998743697798---64045662221343430333203399999918997


No 34 
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=83.46  E-value=2  Score=20.59  Aligned_cols=175  Identities=13%  Similarity=0.069  Sum_probs=88.6

Q ss_pred             HHHHHHHHCCCCEEEECCEEE-ECCCCCCCCCCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             999999987982999421000-0078520016447587999848467999-88620013630004158999976410122
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYF-IHDRESVFLAMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i-~~~~~~~~~~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      .+...+++.|++...+..-.- ...............|++|+.+...-.. .........|+..++...      .....
T Consensus        33 gi~~~~~~~g~~~~l~~~~~~~d~~~~~~~~~~~~~vdgiIv~~~~~~~~~~~~~~~~~iP~V~~~~~~------~~~~~  106 (289)
T 3g85_A           33 GLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYLNKASLTLPIILFNRLS------NKYSS  106 (289)
T ss_dssp             HHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHHHHHHCCCSSCEEEESCCC------SSSEE
T ss_pred             HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCC------CCCCE
T ss_conf             999999986996799986897109999999998579788997787667899999854997289976688------99998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHH
Q ss_conf             354445456789998642201277753897215675620-------14689846982567688750468999-8899986
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKNL  163 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~~  163 (232)
                      +..   +....+..+.+.... .+.+++.++.|......       +.+.++++|..+....++........ .+.+..+
T Consensus       107 V~~---D~~~a~~~a~~~L~~-~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~  182 (289)
T 3g85_A          107 VNV---DNYKMGEKASLLFAK-KRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKL  182 (289)
T ss_dssp             EEE---CHHHHHHHHHHHHHH-TTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHH
T ss_pred             EEE---CCHHHHHHHHHHHHH-CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             997---879999999999997-4997341145676783899998600367887299866314740443213578988877


Q ss_pred             H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC
Q ss_conf             2---37838998078999999971354405----80399718
Q gi|255764510|r  164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS  198 (232)
Q Consensus       164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig  198 (232)
                      +   ..+|+|+..+-..+..+.+.+.+.+.    ++.++++|
T Consensus       183 l~~~~~~~aii~~~d~~a~g~~~al~~~g~~vP~DisV~~ig  224 (289)
T 3g85_A          183 MKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG  224 (289)
T ss_dssp             TTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             HHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             631788654331784999999999998798669623999847


No 35 
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=80.50  E-value=2.5  Score=19.93  Aligned_cols=177  Identities=9%  Similarity=0.037  Sum_probs=88.4

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCC--CCCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             99999998798299942100000785--20016447587999848467999886-2001363000415899997641012
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRE--SVFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~--~~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      -..+.+++.|++++.+..-.-.+...  ......-...|++|+.+......... ....+.|+.+++....     ....
T Consensus        29 gi~~~a~~~g~~l~v~~~~~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~-----~~~~  103 (290)
T 3clk_A           29 GIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQLLQSSDVPYCFLSMGFD-----DDRP  103 (290)
T ss_dssp             HHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC----CHHHHHCC--CEEEESCC-------CCSC
T ss_pred             HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEECCCCCCC-----CCCC
T ss_conf             99999998599899996899999999999999986698789997133455999999863786321466668-----9999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf             2354445456789998642201277753897215675620-------146898469825676887504689998899986
Q gi|255764510|r   91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL  163 (232)
Q Consensus        91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~  163 (232)
                      .+..   +......++.+.... .+.+++.++.+......       +.+.+...+........................
T Consensus       104 ~V~~---d~~~~g~~a~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (290)
T 3clk_A          104 FISS---DDEDIGYQATNLLIN-EGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKA  179 (290)
T ss_dssp             EEEC---CHHHHHHHHHHHHHT-TTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHH
T ss_pred             EEEE---CCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8996---768999999988986-599569997177554226777799999999859986632245675156569999997


Q ss_pred             H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             2---37838998078999999971354405----803997188
Q gi|255764510|r  164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      +   .++++|+..+-..+..+...+...+.    ++.+++++.
T Consensus       180 ~~~~~~~~ai~~~~d~~a~~~~~~l~~~gl~iP~dv~vi~~d~  222 (290)
T 3clk_A          180 FGKNTDLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSIDG  222 (290)
T ss_dssp             HCTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred             HHCCCCCEEECCCCHHHHHCHHHHHHHHHCCCCCCCHHCCCCC
T ss_conf             5223311044147767653438999874056863100015587


No 36 
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=79.98  E-value=2.6  Score=19.83  Aligned_cols=157  Identities=11%  Similarity=0.011  Sum_probs=76.7

Q ss_pred             HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH--H-HHHHHHHCCCC--CEECCCHH--HHHHHHHH
Q ss_conf             999999879829994210000078520016447587999848467--9-99886200136--30004158--99997641
Q gi|255764510|r   15 TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES--L-STLPANFCRHT--PIFAIGEA--SACLARQK   87 (232)
Q Consensus        15 ~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a--v-~~~~~~~~~~~--~~~~vg~~--t~~~~~~~   87 (232)
                      ..+.|++.|++.+..+=-   +.+.......+.++|.++.+....  + +-+.....+-.  -...+|-.  -..++.+.
T Consensus        32 ~~~~le~~G~e~v~~~d~---~~~~~el~~~l~dadi~i~~~~~~~~i~~e~l~~~p~LK~I~~~~~G~D~id~~~~~~~  108 (351)
T 3jtm_A           32 IRDWLESQGHQYIVTDDK---EGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAA  108 (351)
T ss_dssp             CHHHHHHTTCEEEEESCC---SSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHT
T ss_pred             HHHHHHHCCCEEEEECCC---CCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             899999679589981799---89979999655897799977887786699999449997079886860565254433679


Q ss_pred             CCCCCCCCCCCHHHHHHHHH---------------------------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCC
Q ss_conf             01223544454567899986---------------------------422012777538972156756201468984698
Q gi|255764510|r   88 GFTQIFHGKDNSINLAKIIV---------------------------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKI  140 (232)
Q Consensus        88 ~~~~~~~~~~~~~~~~~ll~---------------------------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~  140 (232)
                      |......+...+...++...                           ........++++.++.-......+.+.|+..|.
T Consensus       109 gI~V~n~~g~~~~~vAE~~l~~iL~~~r~~~~~~~~~~~g~~~~~~~~~~~~~L~gk~vgIiG~G~IG~~va~~l~~fgm  188 (351)
T 3jtm_A          109 GLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC  188 (351)
T ss_dssp             TCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             86999899878699999999999999752157776643286323455666331158766677746529999999986388


Q ss_pred             EEEEEEEEEECCCCCCH---------HHHHHHHCCCCEEEEECHHH
Q ss_conf             25676887504689998---------89998623783899807899
Q gi|255764510|r  141 PLRVIDCYYSQDIAYPE---------TTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       141 ~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~i~f~S~~~  177 (232)
                      .|   ..|.........         ..+.++++..|+|++.-|.+
T Consensus       189 ~V---~~~d~~~~~~~~~~~~~~~~~~~l~ell~~sDvI~l~~Plt  231 (351)
T 3jtm_A          189 NL---LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLT  231 (351)
T ss_dssp             EE---EEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCC
T ss_pred             EE---EEECCCCCCHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCC
T ss_conf             67---84458777666677519600478999985499999936787


No 37 
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=79.69  E-value=2.7  Score=19.77  Aligned_cols=109  Identities=6%  Similarity=-0.062  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEE
Q ss_conf             54567899986422012777538972156-----75620146898469825676887504689998899986-2378389
Q gi|255764510|r   97 DNSINLAKIIVEQKVLFTPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAI  170 (232)
Q Consensus        97 ~~~~~~~~ll~~~~~~~~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i  170 (232)
                      +........+........+.+++.++..+     ...+.+.+.+++.|+.+.....|..... +....+..+ ..++|+|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~k~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-D~~~~v~~lk~~~~d~V  202 (392)
T 3lkb_A          124 TSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNL-DNTALLKRFEQAGVEYV  202 (392)
T ss_dssp             CCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCC-CCHHHHHHHHHTTCCEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHCCCCCEE
T ss_conf             64356788899999985389779999368706699999999999865987999980377764-12068887553599889


Q ss_pred             EEE-CHHHHHHHHHHCCHHHCCEEEEE----CCHHHHHHHH
Q ss_conf             980-78999999971354405803997----1889999999
Q gi|255764510|r  171 LFY-ARSSVLYFFSLPLPAKISAAFLC----LSNNIASAIP  206 (232)
Q Consensus       171 ~f~-S~~~v~~~~~~~~~~~~~~~~~~----ig~~tA~~~~  206 (232)
                      ++. ++..+..|++.+...+.+..++.    .++...+.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g  243 (392)
T 3lkb_A          203 VHQNVAGPVANILKDAKRLGLKMRHLGAHYTGGPDLIALAG  243 (392)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCCCEEEECGGGCSHHHHHHHG
T ss_pred             EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
T ss_conf             99356527999999999849996499966778878998777


No 38 
>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum}
Probab=79.48  E-value=2.7  Score=19.73  Aligned_cols=205  Identities=15%  Similarity=0.101  Sum_probs=91.3

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECH--HH-HHHHHHHHCCCCCEECCCHHHHHHHHHHC
Q ss_conf             9999999987982999421000007-85200164475879998484--67-99988620013630004158999976410
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSS--ES-LSTLPANFCRHTPIFAIGEASACLARQKG   88 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~--~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~   88 (232)
                      ..+.+.++++|++++....-.-... ...+.......+|+||+.+.  .+ ...+......+.|+..++.....    ..
T Consensus        28 ~~i~~~a~~~Gy~~~~~~~~~~~~~~~~~i~~li~~~~DgIii~~~~~~~~~~~l~~~~~~giPVV~~~~~~~~----~~  103 (293)
T 3l6u_A           28 NAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS----DA  103 (293)
T ss_dssp             HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC----TT
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCC----CC
T ss_conf             99999999869989999799998999999999997699999994332201389999999869979971777787----76


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH
Q ss_conf             12235444--54567899986422--01277753897215675620-------146898469825676887504689998
Q gi|255764510|r   89 FTQIFHGK--DNSINLAKIIVEQK--VLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE  157 (232)
Q Consensus        89 ~~~~~~~~--~~~~~~~~ll~~~~--~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~  157 (232)
                      ........  ..+...++.+....  ....+...+++..|......       +.+.+++.+. +.....+.........
T Consensus       104 ~~~~v~~~~~~~g~~~a~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~  182 (293)
T 3l6u_A          104 VVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPT-LSIVDSVSGNYDPVTS  182 (293)
T ss_dssp             CSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTT-EEEEEEEECTTCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-CCEEHHHHCCCCHHHH
T ss_conf             330571363221278999998999985378741589961798762689999988866654588-4200111000004778


Q ss_pred             -HHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHCCEE-EEEC--CHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             -8999862---37838998078999999971354405803-9971--88999999976996699879999889
Q gi|255764510|r  158 -TTMKNLL---QNADAILFYARSSVLYFFSLPLPAKISAA-FLCL--SNNIASAIPASYKNVVTVACFPKETS  223 (232)
Q Consensus       158 -~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~~~~-~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~  223 (232)
                       .....++   .++++|+..+-..+....+.+...+.... .+++  .+.+...+ ..|.....+...|.+.+
T Consensus       183 ~~~~~~~l~~~~~~~aI~~~~D~~A~g~~~al~~~g~~~~~~v~~dg~~~~~~~i-~~g~~~~tv~~~~~~~g  254 (293)
T 3l6u_A          183 ERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDGNRAILEAV-DMKSMDATVVQSAEEMM  254 (293)
T ss_dssp             HHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH-HTTSSCEEEECCHHHHH
T ss_pred             HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH-HCCCCEEEEECCHHHHH
T ss_conf             9999987422899619997881899999999997699999799997966999999-83997599957999999


No 39 
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=78.74  E-value=2.9  Score=19.59  Aligned_cols=181  Identities=10%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHHHHHHHHHHCC
Q ss_conf             69999999987982999421000007852-00164475879998484679-99886200136300041589999764101
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEASACLARQKGF   89 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~t~~~~~~~~~   89 (232)
                      ...+.+.++++|+.++.++.-+-.-.... .....-...|++|+++...- ..+......+.|+..++....    ....
T Consensus        27 ~~~i~~~a~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vDGiIv~~~~~~~~~~~~l~~~~iPvV~i~~~~~----~~~~  102 (287)
T 3bbl_A           27 LSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYNDPRVQFLLKQKFPFVAFGRSNP----DWDF  102 (287)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTCHHHHHHHHTTCCEEEESCCST----TCCC
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCC
T ss_conf             999999999779999999689998999999999981898789997898998999999967997999887688----9998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHH-H
Q ss_conf             2235444545678999864220127775389721567562-------0146898469825676887504689998899-9
Q gi|255764510|r   90 TQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTM-K  161 (232)
Q Consensus        90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~-~  161 (232)
                      ..+..   +.......+.+.... .+..++.++.+.....       .+.+.+...|.......+............. .
T Consensus       103 ~~V~~---d~~~~~~~a~~~L~~-~G~r~I~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (287)
T 3bbl_A          103 AWVDI---DGTAGTRQAVEYLIG-RGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTL  178 (287)
T ss_dssp             CEEEE---CHHHHHHHHHHHHHH-HTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHH
T ss_pred             CEEEE---CHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             78984---889999999999997-49907999248977624566667899999972997431200135675568999999


Q ss_pred             HHH-----CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             862-----37838998078999999971354405----8039971889
Q gi|255764510|r  162 NLL-----QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       162 ~~~-----~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                      ...     .++++++.++...+...++.+...+.    ++.+++++..
T Consensus       179 ~~~~~~~~~~~~ai~~~~d~~A~gv~~~l~~~g~~vp~disvig~d~~  226 (287)
T 3bbl_A          179 HLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDA  226 (287)
T ss_dssp             HHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCC
T ss_pred             HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCCCH
T ss_conf             999746679975999887788899999999859998865023303876


No 40 
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=77.19  E-value=2.1  Score=20.42  Aligned_cols=58  Identities=14%  Similarity=-0.017  Sum_probs=33.7

Q ss_pred             CEEEEECC--HHH----HHHHHHHHHHCCCCEEEECCEEEEC----------------CC--CCCCCCCCCCCCEEEEEC
Q ss_conf             93898589--688----6999999998798299942100000----------------78--520016447587999848
Q gi|255764510|r    1 MYIVITRP--IKK----ALRTQEKIQKMGYIPVMMPLSYFIH----------------DR--ESVFLAMQQSYGAIAITS   56 (232)
Q Consensus         1 M~ilitRp--~~~----a~~~~~~L~~~G~~~i~~Pli~i~~----------------~~--~~~~~~~~~~~d~iiftS   56 (232)
                      |||||.--  ...    +...++-+++.|.++-.+.+-+...                ..  ......++.++|.|||-|
T Consensus         7 mKilivy~S~~GnT~~lA~~ia~g~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iilgs   86 (211)
T 1ydg_A            7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS   86 (211)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf             68999996998489999999999988659779999736657212220256665178765660665599998588118824


Q ss_pred             HH
Q ss_conf             46
Q gi|255764510|r   57 SE   58 (232)
Q Consensus        57 ~~   58 (232)
                      |.
T Consensus        87 P~   88 (211)
T 1ydg_A           87 PT   88 (211)
T ss_dssp             EE
T ss_pred             CC
T ss_conf             51


No 41 
>1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} SCOP: c.23.5.3 PDB: 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* 2qx6_A* 2qx8_A* 2qx9_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 2bzs_A*
Probab=76.89  E-value=1.3  Score=21.69  Aligned_cols=31  Identities=13%  Similarity=0.140  Sum_probs=20.5

Q ss_pred             CEEEEEC--CHHH------HHHHHHHHHHCCCCEEEECC
Q ss_conf             9389858--9688------69999999987982999421
Q gi|255764510|r    1 MYIVITR--PIKK------ALRTQEKIQKMGYIPVMMPL   31 (232)
Q Consensus         1 M~ilitR--p~~~------a~~~~~~L~~~G~~~i~~Pl   31 (232)
                      |||||.=  |.++      +..+.+.+++.|.++...=|
T Consensus         3 mKvLiI~g~P~~~S~s~~l~~~~~~~l~~~g~ev~~~dL   41 (230)
T 1sg0_A            3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL   41 (230)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             889999828998568999999999999967997999987


No 42 
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=76.41  E-value=3.4  Score=19.19  Aligned_cols=178  Identities=15%  Similarity=0.147  Sum_probs=86.8

Q ss_pred             HHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf             99999987982999421000007-8520016447587999848467999886-200136300041589999764101223
Q gi|255764510|r   15 TQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKGFTQI   92 (232)
Q Consensus        15 ~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~~~~~   92 (232)
                      +...+++.|+.++.+..-.-... ........-..+|++|+.+...-.-... ....+.|+..++......-  ..+..+
T Consensus        34 i~~~a~~~Gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~--~~~~~v  111 (295)
T 3hcw_A           34 ISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIGKPTSDID--HQFTHI  111 (295)
T ss_dssp             HHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEEEESCCCSSGG--GGSCEE
T ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCC--CCEEEE
T ss_conf             999999869989999789997999999999995899889997665660999999975998899831477788--765698


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH---HHHHH
Q ss_conf             5444545678999864220127775389721567562-------0146898469825676887504689998---89998
Q gi|255764510|r   93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE---TTMKN  162 (232)
Q Consensus        93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~---~~~~~  162 (232)
                      .   .+.......+...... .+..++.++.|.....       -+.+.+++.|..++.+.+.  .......   ..+..
T Consensus       112 ~---~d~~~a~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  185 (295)
T 3hcw_A          112 D---NDNILASENLTRHVIE-QGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETS--NEREVILNYMQNLHT  185 (295)
T ss_dssp             E---ECHHHHHHHHHHHHHH-HCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEEC--SCHHHHHHHHHHHHH
T ss_pred             C---CCHHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECC--CCCHHHHHHHHHHHH
T ss_conf             3---6689999999999997-298756775487431578888899999999769994244325--660356677777777


Q ss_pred             HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             62---37838998078999999971354405----8039971889
Q gi|255764510|r  163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                      ++   ..+++|+.++-..+..+.+.+...+.    ++.+++++..
T Consensus       186 ~~~~~~~~~aii~~~d~~a~g~~~~l~~~g~~ip~dv~vvg~d~~  230 (295)
T 3hcw_A          186 RLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFNDS  230 (295)
T ss_dssp             HHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEECCS
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCH
T ss_conf             641477764345577899999999999869988946144414886


No 43 
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=73.62  E-value=4  Score=18.76  Aligned_cols=176  Identities=8%  Similarity=0.077  Sum_probs=90.7

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHH-HHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             9999999879829994210000078-52001644758799984846799988-620013630004158999976410122
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLP-ANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~-~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      .+...+.++|++++..+.-.-.... .-.........|+||+.+.+...... .....+.|+..++...      .+...
T Consensus        20 gi~~~a~~~gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~------~~~~~   93 (276)
T 2h0a_A           20 GIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTERPVVLVDAQN------PRYDS   93 (276)
T ss_dssp             HHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC------CCSCSSCEEEESSCC------TTSEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECC------CCCCE
T ss_conf             999999986998999978998799999999998559998999547799899999864399489994136------88898


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------CHHHHHHHCCCEEEEEEEEEECCCCCCH-H
Q ss_conf             35444545678999864220127775389721567562------------0146898469825676887504689998-8
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF------------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-T  158 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~------------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~  158 (232)
                      +..   +.......+.+... .....++.++.+.....            -+.+.+.++|..+....+.......... .
T Consensus        94 V~~---D~~~a~~~~~~~L~-~~g~~~i~~i~~~~~~~~~~~~~~~~R~~Gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~  169 (276)
T 2h0a_A           94 VYL---DNRLGGRLAGAYLA-RFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRL  169 (276)
T ss_dssp             EEE---CSHHHHHHHHHHHT-TSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHH
T ss_pred             EEE---CCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             995---65899999999998-71896269982478750123048999999999999980999771011111111157999


Q ss_pred             HHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             999862---37838998078999999971354405----803997188
Q gi|255764510|r  159 TMKNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       159 ~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      .+..++   .++++|+..|...+....+.+...+.    ++.++++..
T Consensus       170 ~~~~~l~~~~~~~aii~~~d~~a~g~~~al~~~g~~vp~~i~vvg~D~  217 (276)
T 2h0a_A          170 ALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDG  217 (276)
T ss_dssp             HHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESC
T ss_pred             HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEECCC
T ss_conf             999988635677689967779999999999986998896531142278


No 44 
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=72.54  E-value=4.2  Score=18.60  Aligned_cols=142  Identities=10%  Similarity=-0.039  Sum_probs=67.1

Q ss_pred             CCCCEEE--EECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             7587999--84846799988620013630004158999976410122354445456789998642201277753897215
Q gi|255764510|r   47 QSYGAIA--ITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGG  124 (232)
Q Consensus        47 ~~~d~ii--ftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g  124 (232)
                      +..+.|+  ++|..+............+.+..+..+............+............+...... ...+++.++..
T Consensus        72 ~~V~~viG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~k~vaii~~  150 (379)
T 3n0w_A           72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLA-KGYKTWFLMLP  150 (379)
T ss_dssp             SCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECC
T ss_conf             79869996142198999999998724772330355454456778885467345507899999999985-58848999568


Q ss_pred             C-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEE-CHHHHHHHHHHCCHHHC
Q ss_conf             6-----75620146898469825676887504689998899986-2378389980-78999999971354405
Q gi|255764510|r  125 K-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFY-ARSSVLYFFSLPLPAKI  190 (232)
Q Consensus       125 ~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~-S~~~v~~~~~~~~~~~~  190 (232)
                      +     .....+.+.+++.|..+.....|..-. .+....+..+ ..++|+|++. ++.....|++.+...+.
T Consensus       151 d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~q~~~~g~  222 (379)
T 3n0w_A          151 DAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET-QDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGL  222 (379)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC-CCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             870789999999999885499257678507987-668999999862499889994474579999999997599


No 45 
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=72.22  E-value=4.3  Score=18.56  Aligned_cols=96  Identities=11%  Similarity=-0.058  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEEC--HHHHHHH---HHHCCHHH-CCEEEEECC-
Q ss_conf             6201468984698256768875046899988999862--3783899807--8999999---97135440-580399718-
Q gi|255764510|r  128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYA--RSSVLYF---FSLPLPAK-ISAAFLCLS-  198 (232)
Q Consensus       128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S--~~~v~~~---~~~~~~~~-~~~~~~~ig-  198 (232)
                      ...+...|+..||+|..+-....      .+.+....  .++|.|.+++  ......+   .+.+...+ .++.+++-| 
T Consensus        20 ~~~va~~l~~~G~~V~~LG~~~p------~e~iv~~~~~~~~d~V~iS~~~~~~~~~~~~~i~~L~~~~~~~v~iivGG~   93 (137)
T 1ccw_A           20 NKILDHAFTNAGFNVVNIGVLSP------QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGN   93 (137)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEC------HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred             HHHHHHHHHHCCCEEEECCCCCC------HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             99999999987987997786669------999999999839987887611344557799999999974999997999788


Q ss_pred             --------HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             --------89999999769966998799998899999861
Q gi|255764510|r  199 --------NNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       199 --------~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                              +..+..+++.|+..+. .+..+.+..++.|.+
T Consensus        94 ~~~~~~~~~~~~~~l~~~G~~~vf-~~gt~~~~~~~~i~~  132 (137)
T 1ccw_A           94 IVVGKQHWPDVEKRFKDMGYDRVY-APGTPPEVGIADLKK  132 (137)
T ss_dssp             CSSSSCCHHHHHHHHHHTTCSEEC-CTTCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEE-CCCCCHHHHHHHHHH
T ss_conf             788744418899999975988897-998899999999999


No 46 
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=69.38  E-value=4.9  Score=18.18  Aligned_cols=178  Identities=9%  Similarity=0.064  Sum_probs=91.4

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHH-HHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             999999987982999421000007-852001644758799984846799-988620013630004158999976410122
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLS-TLPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~-~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      .+.+.+.+.|++++....-.-... ..-........+|++|+.+..... ........+.|+..++....     .....
T Consensus        36 ~i~~~a~~~gy~l~l~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~iPvV~~d~~~~-----~~~~~  110 (303)
T 3kke_A           36 GVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLEGVPAVTINSRVP-----GRVGS  110 (303)
T ss_dssp             HHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHTTSCEEEESCCCT-----TCCCE
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC-----CCCCE
T ss_conf             9999999769989999589997999999999995897889840346763999999975998899715579-----98997


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHH
Q ss_conf             354445456789998642201277753897215675620-------146898469825676887504689998-899986
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNL  163 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~  163 (232)
                      +.   .+.......+.+.... .+.+++.++.|......       +.+.+.+.|..+....++......... .....+
T Consensus       111 V~---~d~~~~~~~~~~~L~~-~G~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (303)
T 3kke_A          111 VI---LDDQKGGGIATEHLIT-LGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTL  186 (303)
T ss_dssp             EE---ECHHHHHHHHHHHHHH-TTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHH
T ss_pred             EE---ECHHHHHHHHHHHHHH-HHHCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHH
T ss_conf             99---7459999999999998-5205576415887660799999999999998599854223024566666799999999


Q ss_pred             -----H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             -----2---37838998078999999971354405----8039971889
Q gi|255764510|r  164 -----L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       164 -----~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                           +   ..+++|+..+-..+..+.+.+...+.    ++.++++...
T Consensus       187 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~dv~vig~d~~  235 (303)
T 3kke_A          187 YRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINTT  235 (303)
T ss_dssp             HHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred             HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCH
T ss_conf             9854431257984899667788999999999839865556169975787


No 47 
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3}
Probab=68.98  E-value=5  Score=18.13  Aligned_cols=204  Identities=10%  Similarity=0.091  Sum_probs=92.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE-ECCCH
Q ss_conf             938985896886999999998798299942100000785200164475879998484679-9988620013630-00415
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI-FAIGE   78 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~-~~vg~   78 (232)
                      +|||++.+.++  +-...|++++ ++...+..     ..+.....+.++|+++..+..-+ +-+..... ..++ ...|.
T Consensus         3 ~kilv~~~~~~--~~~~~l~~~~-~v~~~~~~-----~~e~l~~~~~~~d~ii~~~~~~i~~~~l~~~~-~Lk~I~~~~a   73 (333)
T 2d0i_A            3 PKVGVLLKMKR--EALEELKKYA-DVEIILYP-----SGEELKGVIGRFDGIIVSPTTKITREVLENAE-RLKVISCHSA   73 (333)
T ss_dssp             SEEEECSCCCH--HHHHHHHTTS-EEEECCSC-----CHHHHHHHGGGCSEEEECTTSCBCHHHHTTCT-TCCEEEESSS
T ss_pred             CEEEEECCCCH--HHHHHHHCCC-CEEEEECC-----CHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC-CCEEEEECCC
T ss_conf             66999688899--9999987049-99998388-----99999998669999998389982899991699-9809988981


Q ss_pred             HH----HHHHHHHCCCCCCCCCCCHHHHHHHH----HHH---------------------------HHCCCCCCEEEEEC
Q ss_conf             89----99976410122354445456789998----642---------------------------20127775389721
Q gi|255764510|r   79 AS----ACLARQKGFTQIFHGKDNSINLAKII----VEQ---------------------------KVLFTPQKPLIYLG  123 (232)
Q Consensus        79 ~t----~~~~~~~~~~~~~~~~~~~~~~~~ll----~~~---------------------------~~~~~~~~~vl~~~  123 (232)
                      ++    ..++.+.|......+...+...++..    ...                           ......++++.++.
T Consensus        74 G~d~id~~~~~~~gI~v~n~~~~~~~~VAE~~l~~iL~l~R~l~~~~~~~~~g~~~~~~~~~~~~~~~~~l~g~~vgIiG  153 (333)
T 2d0i_A           74 GYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILG  153 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEEC
T ss_pred             CCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEEE
T ss_conf             33401799998679999978986647899999999999972635766665348732111001356654310287799991


Q ss_pred             CCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCH-------HHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEEE
Q ss_conf             5675620146898469825676887504689998-------899986237838998078999999971354405803997
Q gi|255764510|r  124 GKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPE-------TTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFLC  196 (232)
Q Consensus       124 g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~  196 (232)
                      -......+.+.++..|..|.   .|.........       ..+.+++...|+|++.-|.+-+.             --.
T Consensus       154 ~G~IG~~va~~~~~fg~~v~---~~~~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T-------------~~l  217 (333)
T 2d0i_A          154 MGAIGKAIARRLIPFGVKLY---YWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDT-------------YHI  217 (333)
T ss_dssp             CSHHHHHHHHHHGGGTCEEE---EECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTT-------------TTS
T ss_pred             CCHHHHHHHHHHHCCCCEEE---EECCCCCCCHHHHCCCCCCCHHHHCCCCCEEEECCCCCCCC-------------CCC
T ss_conf             07899999998625686588---50588871034430724379889526499999878876666-------------441


Q ss_pred             CCHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHC
Q ss_conf             18899999997699669987--999988999998614
Q gi|255764510|r  197 LSNNIASAIPASYKNVVTVA--CFPKETSLLKLLPLR  231 (232)
Q Consensus       197 ig~~tA~~~~~~g~~~~~va--~~p~~~~ll~al~~~  231 (232)
                      |+...-+.++. + .-+-++  +-=++++|+++|...
T Consensus       218 i~~~~l~~mk~-~-~lIN~aRG~vVde~aL~~aL~~g  252 (333)
T 2d0i_A          218 INEERVKKLEG-K-YLVNIGRGALVDEKAVTEAIKQG  252 (333)
T ss_dssp             BCHHHHHHTBT-C-EEEECSCGGGBCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCC-C-CEEECCCCHHCCHHHHHHHHHHC
T ss_conf             24547764565-7-66986774321699999999749


No 48 
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=68.97  E-value=5  Score=18.13  Aligned_cols=180  Identities=9%  Similarity=0.015  Sum_probs=86.9

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             99999999879829994210000078-52001644758799984846799988620013630004158999976410122
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      ..+.+.+++.|++++..+.-.-.... ...........|++|+.+...-...........|+..++.....   ......
T Consensus        34 ~gi~~~a~~~gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ip~V~~~~~~~~---~~~~~~  110 (301)
T 3miz_A           34 RGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPESGDVSIPTVMINCRPQT---RELLPS  110 (301)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCCTTCCCCEEEEEEECSS---TTSSCE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCC---CCCCCE
T ss_conf             99999999779989999799996999999999875787689961631001017778449998999612578---888878


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCC--C---C-HH
Q ss_conf             354445456789998642201277753897215675620-------146898469825676887504689--9---9-88
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIA--Y---P-ET  158 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~--~---~-~~  158 (232)
                      +.   .+.......+.+.... ...+++.++.+......       +.+.+.+.|.......++.....+  .   . ..
T Consensus       111 V~---~D~~~~~~~~~~~L~~-~g~~~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  186 (301)
T 3miz_A          111 IE---PDDYQGARDLTRYLLE-RGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFA  186 (301)
T ss_dssp             EE---ECHHHHHHHHHHHHHT-TTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHH
T ss_pred             EE---ECHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             99---7799999999999998-1897599984785456414665999999998599867624664034530466779999


Q ss_pred             HHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             999862---37838998078999999971354405----803997188
Q gi|255764510|r  159 TMKNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       159 ~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      ....++   ..+++|+..|...+..+.+.+...+.    ++.++|++.
T Consensus       187 ~~~~ll~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~ivg~d~  234 (301)
T 3miz_A          187 AATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDD  234 (301)
T ss_dssp             HHHHHHTSTTCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBC
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf             999999559999830038899999999999981998896300241277


No 49 
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=68.50  E-value=5.2  Score=18.07  Aligned_cols=180  Identities=9%  Similarity=0.046  Sum_probs=87.2

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             9999999987982999421000007-8520016447587999848467999-8862001363000415899997641012
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      ..+.+.++++|+.++.++.-.-... ...+........|++|+.+...-.. +........++..++....    .....
T Consensus        36 ~~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~~~vv~~~~~~~----~~~~~  111 (289)
T 2fep_A           36 RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEE----QEETP  111 (289)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHSSSCEEEESCCCT----TCCSC
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCC----CCCCC
T ss_conf             99999999869989999689997999999999996398747996315887999999864997899613467----89899


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHH
Q ss_conf             235444545678999864220127775389721567562--------0146898469825676887504689998-8999
Q gi|255764510|r   91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMK  161 (232)
Q Consensus        91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~  161 (232)
                      .+.   .+.......+...... .+..++.+++|.....        .+...+++.|..+....++......... ....
T Consensus       112 ~V~---~D~~~~~~~~~~~l~~-~G~r~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (289)
T 2fep_A          112 SVA---IDYEQAIYDAVKLLVD-KGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQ  187 (289)
T ss_dssp             EEE---CCHHHHHHHHHHHHHH-TTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHH
T ss_pred             EEE---ECHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHH
T ss_conf             899---8789999999999997-499579996267543301345667889999984999772227732431144899999


Q ss_pred             HHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             862---37838998078999999971354405----8039971889
Q gi|255764510|r  162 NLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                      .++   ..+++|+..+-..+..+...+.+.+.    ++.+++++..
T Consensus       188 ~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vP~di~i~g~d~~  233 (289)
T 2fep_A          188 HLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNT  233 (289)
T ss_dssp             HHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred             HHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCH
T ss_conf             9995699996587478899999999999859999974599613882


No 50 
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=67.80  E-value=5.3  Score=17.98  Aligned_cols=74  Identities=11%  Similarity=0.104  Sum_probs=38.0

Q ss_pred             CHHHHHHH-HCCCCEEEEECHHHHHHHHHH--CCHHHCCEE--EEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             98899986-237838998078999999971--354405803--997188999999976996699879999889999986
Q gi|255764510|r  156 PETTMKNL-LQNADAILFYARSSVLYFFSL--PLPAKISAA--FLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       156 ~~~~~~~~-~~~~d~i~f~S~~~v~~~~~~--~~~~~~~~~--~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      .++.+..+ +++.++++..+++-..++.-.  +.......+  .-+-++...+.++..|...++.+..-..+.|.+++.
T Consensus        60 ~~~~L~~a~i~~a~~vi~~t~~d~~n~~~~l~~r~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~~~~a~~l~~~l~  138 (153)
T 1id1_A           60 DSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLN  138 (153)
T ss_dssp             SHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHT
T ss_pred             CHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC
T ss_conf             9999975798833899998698799999999999978998399998898999999977989999889999999999847


No 51 
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3
Probab=67.46  E-value=4.1  Score=18.67  Aligned_cols=111  Identities=7%  Similarity=0.002  Sum_probs=64.8

Q ss_pred             CCCEEEE--ECCCCCC----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHHHH
Q ss_conf             7753897--2156756----201468984698256768875046899988999862378389980789-------99999
Q gi|255764510|r  115 PQKPLIY--LGGKPRN----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVLYF  181 (232)
Q Consensus       115 ~~~~vl~--~~g~~~~----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~~~  181 (232)
                      ..+++++  -+..+..    ..+.+.|++.|..+..+.++....  .....+...+.+.|+++|.||.       .+..|
T Consensus       264 ~~~kv~Ivy~S~~G~T~~~A~~i~~~l~~~g~~~~~~~~~d~~~--~~~~~i~~~~~~~d~~~~GsPT~~~~~~p~~~~~  341 (410)
T 1vme_A          264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER--PAISEILKDIPDSEALIFGVSTYEAEIHPLMRFT  341 (410)
T ss_dssp             CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC--CCHHHHHHHSTTCSEEEEEECEETTEECHHHHHH
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCC--CCHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHH
T ss_conf             67724999975647799999999999986599349998555688--8645667778528979998577389667899999


Q ss_pred             HHHCCHHHC-CEEEEECC---------HHHHHHHHHCCCCEEE---E-CCCCCHHHHHHH
Q ss_conf             971354405-80399718---------8999999976996699---8-799998899999
Q gi|255764510|r  182 FSLPLPAKI-SAAFLCLS---------NNIASAIPASYKNVVT---V-ACFPKETSLLKL  227 (232)
Q Consensus       182 ~~~~~~~~~-~~~~~~ig---------~~tA~~~~~~g~~~~~---v-a~~p~~~~ll~a  227 (232)
                      ++.+..... ...+.++|         +...+.++..|++.+-   + ...|+++.+-++
T Consensus       342 l~~l~~~~~~~K~~~~fgsygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~le~~  401 (410)
T 1vme_A          342 LLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSFTEIKGSNMDERKIEEA  401 (410)
T ss_dssp             HHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEEEEEECSTTCCTHHHHHH
T ss_pred             HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCEEEECCCCCHHHHHHH
T ss_conf             999872534899899998279870899999999998799896755798899999999999


No 52 
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=66.55  E-value=5.7  Score=17.83  Aligned_cols=175  Identities=14%  Similarity=0.087  Sum_probs=86.2

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCCC-CCCCCCCCCEEEEECHHHHHH-HHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             9999999879829994210000078520-016447587999848467999-88620013630004158999976410122
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRESV-FLAMQQSYGAIAITSSESLST-LPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~~~~~~~~d~iiftS~~av~~-~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      .+...++++|++++..+.-.-....... ........|++|+.+...-.. +......+.|+..++....    ......
T Consensus        31 gi~~~~~~~g~~l~v~~~~~~~~~~~~~~~~l~~~~vDgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~~----~~~~~~  106 (288)
T 3gv0_A           31 GITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPNDPRVRFMTERNMPFVTHGRSDM----GIEHAF  106 (288)
T ss_dssp             HHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCCCS----SCCCEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE
T ss_conf             9999999879989999689996999999999995898689984776764999999976996999176578----899848


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHH----H
Q ss_conf             354445456789998642201277753897215675620-------14689846982567688750468999889----9
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETT----M  160 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~----~  160 (232)
                      +  . .+......++.+... ....++|.++.+......       +.+.+++.|........+..   ....+.    .
T Consensus       107 V--~-~d~~~~~~~a~~~L~-~~g~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~gl~~~~~~~~~~---~~~~~~~~~~~  179 (288)
T 3gv0_A          107 H--D-FDNEAYAYEAVERLA-QCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTI---ETPLEKIRDFG  179 (288)
T ss_dssp             E--E-ECHHHHHHHHHHHHH-HTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCT---TSCHHHHHHHH
T ss_pred             E--E-ECHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCC---CCHHHHHHHHH
T ss_conf             9--7-089999999999998-629960899648754323878889999999983998562331133---10023678999


Q ss_pred             HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             9862---37838998078999999971354405----803997188
Q gi|255764510|r  161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      ..++   .++|+|+.+|-..+..+.+.+...+.    ++.++|++.
T Consensus       180 ~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~dv~iigfd~  225 (288)
T 3gv0_A          180 QRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQS  225 (288)
T ss_dssp             HHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEES
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             9986422577523446669999999999984998898518999778


No 53 
>3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=66.08  E-value=5.8  Score=17.77  Aligned_cols=57  Identities=9%  Similarity=-0.008  Sum_probs=36.4

Q ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHH
Q ss_conf             38985896886999999998798299942100000785-2001644758799984846
Q gi|255764510|r    2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~   58 (232)
                      +||++.+...+.++++.++.+|++++.++.-.-...+. .+......+.++++++..+
T Consensus        97 ~vlv~~~G~f~~~~~~ia~~~G~~v~~i~~~~g~~~d~e~i~~~i~~~~k~v~~~~~~  154 (376)
T 3f0h_A           97 KVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDE  154 (376)
T ss_dssp             CEEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEECCC
T ss_conf             8999959888999999999819974463168998779899998725588489983467


No 54 
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=65.81  E-value=5.8  Score=17.74  Aligned_cols=13  Identities=15%  Similarity=0.187  Sum_probs=7.9

Q ss_pred             CCCCCEEEEECHH
Q ss_conf             4758799984846
Q gi|255764510|r   46 QQSYGAIAITSSE   58 (232)
Q Consensus        46 ~~~~d~iiftS~~   58 (232)
                      +...|.|||.+|-
T Consensus        84 i~~AD~iV~~~P~   96 (201)
T 1t5b_A           84 LKAHDVIVIAAPM   96 (201)
T ss_dssp             HHHCSEEEEECCC
T ss_pred             HHHCCEEEEECCC
T ss_conf             9858908997376


No 55 
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=64.10  E-value=6.3  Score=17.54  Aligned_cols=46  Identities=11%  Similarity=0.101  Sum_probs=38.5

Q ss_pred             CCHHHCCEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             3544058039971--889999999769966998799998899999861
Q gi|255764510|r  185 PLPAKISAAFLCL--SNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       185 ~~~~~~~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      ....+.+..+++|  |+...++++.++|.-..+..+||..+|-.||..
T Consensus       224 ~~RFG~k~tyvvIGDG~dEe~AAk~l~~PFwrI~sh~Dl~~l~~al~~  271 (274)
T 3geb_A          224 MQRFGRKAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALEL  271 (274)
T ss_dssp             HHHHCTTSEEEEEESSHHHHHHHHHTTCCEEECCSHHHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             998689856999789767999999629985880277119999775531


No 56 
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=62.70  E-value=6.7  Score=17.39  Aligned_cols=193  Identities=12%  Similarity=0.117  Sum_probs=90.3

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             9999999987982999421000007-852001644758799984846799988620013630004158999976410122
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      ..+...++++|+.++.+..-.-... ............|+||+++...... ......+.|+..++..      ..++..
T Consensus        22 ~~i~~~~~~~gy~~~i~~~~~~~~~~~~~l~~l~~~~vdgiI~~~~~~~~~-~~~~~~~~p~v~i~~~------~~~~~~   94 (255)
T 1byk_A           22 QTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE-EMLAHWQSSLVLLARD------AKGFAS   94 (255)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-TTSGGGSSSEEEESSC------CSSCEE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHCCCCEEEEECC------CCCCCE
T ss_conf             999999998599899994899989999999999956998999858996569-9999779998999347------899988


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf             35444545678999864220127775389721567562--------0146898469825676887504689998899986
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL  163 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~  163 (232)
                      +.   .+.......+.+.... .+.+++.++.+.....        -+.+.++++|....  ..+..............+
T Consensus        95 V~---~d~~~~~~~~~~~l~~-~G~~~I~~i~~~~~~~~~~~~R~~g~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~  168 (255)
T 1byk_A           95 VC---YDDEGAIKILMQRLYD-QGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPV--AALPGLAMKQGYENVAKV  168 (255)
T ss_dssp             EE---ECHHHHHHHHHHHHHH-TTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCE--EECCCSCHHHHHHHSGGG
T ss_pred             EE---ECHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--EECCCCCHHHHHHHHHHH
T ss_conf             99---8779999999999986-49956997777856552789999999999998699841--202777778899999985


Q ss_pred             H-CCCCEEEEECHHHHHHHHHHCCHHHC-CEEEEECCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             2-37838998078999999971354405-803997188999999976996699879999
Q gi|255764510|r  164 L-QNADAILFYARSSVLYFFSLPLPAKI-SAAFLCLSNNIASAIPASYKNVVTVACFPK  220 (232)
Q Consensus       164 ~-~~~d~i~f~S~~~v~~~~~~~~~~~~-~~~~~~ig~~tA~~~~~~g~~~~~va~~p~  220 (232)
                      + .++|+|+.+|-..+..+.+.+...+. ...+++++..--.....-+..  .+...+.
T Consensus       169 l~~~~~ai~~~~D~~A~g~~~~l~~~g~~d~~iig~d~~~~~~~~~p~lt--tv~~~~~  225 (255)
T 1byk_A          169 ITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIV--TVDPGYA  225 (255)
T ss_dssp             CCTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCCHHHHHHCTTSE--EEBCCHH
T ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCE--EEEECHH
T ss_conf             06567613234258999999999981999872999998289983389956--9983999


No 57 
>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp}
Probab=62.35  E-value=6.8  Score=17.35  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=43.0

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC----CCHHHHHHHHCCCCEEEEECHHHH
Q ss_conf             77753897215675620146898469825676887504689----998899986237838998078999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA----YPETTMKNLLQNADAILFYARSSV  178 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~----~~~~~~~~~~~~~d~i~f~S~~~v  178 (232)
                      ..++++.++.-......+.+.|+..|.+|..+..+......    .....+.+++.+.|+|++.-|.+-
T Consensus       137 l~g~tvgIvG~G~IG~~va~~l~~fG~~v~~~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~~~~Plt~  205 (315)
T 3kbo_A          137 REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTA  205 (315)
T ss_dssp             GGGCCEEEESCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTEEEEESGGGHHHHHHTCSEEEECCCCCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCEEECCCCCEEECCCCCCC
T ss_conf             467578997618389999999987499255202344323231212331010000320337840478853


No 58 
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=61.74  E-value=7  Score=17.28  Aligned_cols=176  Identities=14%  Similarity=0.141  Sum_probs=87.5

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCC----CCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHC
Q ss_conf             999999987982999421000007852----0016447587999848467999886-20013630004158999976410
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRES----VFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKG   88 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~----~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~   88 (232)
                      .+.+.+++.|++++....   ......    .....-...|++|+.+......... ......++..++...    ....
T Consensus        24 gi~~~~~~~Gy~~~~~~s---~~~~~~e~~~i~~l~~~~vdgiIv~~~~~~~~~~~~l~~~~~pvV~i~~~~----~~~~   96 (275)
T 3d8u_A           24 SFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELS----SKAS   96 (275)
T ss_dssp             HHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHHTCCEEEESSSC----SSSS
T ss_pred             HHHHHHHHCCCEEEEEEC---CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCC----CCCC
T ss_conf             999999985999999968---999899999999999739989995798799899999997599889984146----8898


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHH
Q ss_conf             122354445456789998642201277753897215675620-------14689846982567688750468999-8899
Q gi|255764510|r   89 FTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTM  160 (232)
Q Consensus        89 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~  160 (232)
                      ...+.   .+.......+...... .+.+++.++.+......       +.+.+.+.|..+....++........ .+..
T Consensus        97 ~~~V~---~d~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (275)
T 3d8u_A           97 YLNIG---VDHFEVGKACTRHLIE-QGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGL  172 (275)
T ss_dssp             SEEEC---BCHHHHHHHHHHHHHT-TTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHH
T ss_pred             CCEEE---ECHHHHHHHHHHHHHH-CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf             88899---4617999999998874-0364152046686416899999999999997499876168960465305689999


Q ss_pred             HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             9862---37838998078999999971354405----8039971889
Q gi|255764510|r  161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                      ..++   .++++|+..+-..+..+.+.+...+.    ++.+++++..
T Consensus       173 ~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~di~vvg~d~~  219 (275)
T 3d8u_A          173 AKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGS  219 (275)
T ss_dssp             HHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESSCC
T ss_pred             HHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCH
T ss_conf             99987502443223078899999999999738878860699997881


No 59 
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=61.51  E-value=5.7  Score=17.81  Aligned_cols=48  Identities=8%  Similarity=0.137  Sum_probs=30.6

Q ss_pred             CEEEEECCH-HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf             938985896-88699999999879829994210000078520016447587999848
Q gi|255764510|r    1 MYIVITRPI-KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS   56 (232)
Q Consensus         1 M~ilitRp~-~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS   56 (232)
                      |+|+|.=-. .....+.+.|+++|+++...|-        +....++.++|.||++-
T Consensus        14 ~~i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~--------~~~~~~l~~~dgiIl~G   62 (212)
T 2a9v_A           14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPN--------DIDSSELDGLDGLVLSG   62 (212)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEET--------TSCGGGGTTCSEEEEEE
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC--------CCCHHHHHCCCEEEECC
T ss_conf             67999999876899999999978983899969--------79999983699199979


No 60 
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=60.37  E-value=7.4  Score=17.14  Aligned_cols=13  Identities=0%  Similarity=-0.217  Sum_probs=8.4

Q ss_pred             CCCCCEEEEECHH
Q ss_conf             4758799984846
Q gi|255764510|r   46 QQSYGAIAITSSE   58 (232)
Q Consensus        46 ~~~~d~iiftS~~   58 (232)
                      +...|.|||.||-
T Consensus        90 i~~AD~iV~~sP~  102 (211)
T 3p0r_A           90 FLEADKVVFGFPL  102 (211)
T ss_dssp             HHHCSEEEEEEEC
T ss_pred             HHHCCEEEEECCC
T ss_conf             9838989997066


No 61 
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435}
Probab=60.15  E-value=7.4  Score=17.11  Aligned_cols=179  Identities=9%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHHHHHHHHHH-HCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             999999987982999421000007852-00164475879998484679998862-0013630004158999976410122
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSESLSTLPAN-FCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~av~~~~~~-~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      .+...+.+.|++.+.++.-.-...... .....-...|++|+.+...-..+... .....|+..++....    ......
T Consensus        48 ~i~~~~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~ip~v~~~~~~~----~~~~~~  123 (305)
T 3huu_A           48 GINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLN----YENIIH  123 (305)
T ss_dssp             HHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHHTTCCEEEESCCCS----STTCCE
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCE
T ss_conf             9999999759989999578866899999999984787549833777876899999864998899815545----688876


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCC-CHHHHHHH
Q ss_conf             354445456789998642201277753897215675620-------1468984698256768875046899-98899986
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAY-PETTMKNL  163 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~-~~~~~~~~  163 (232)
                      +.   .+....+..+...... .+.+++.++.+......       +.+.+...|...+............ ....+...
T Consensus       124 v~---~d~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  199 (305)
T 3huu_A          124 ID---NDNIDAAYQLTQYLYH-LGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQYCIDA  199 (305)
T ss_dssp             EE---CCHHHHHHHHHHHHHH-TTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHHHC-------
T ss_pred             EE---CCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             84---3727999999999998-0897531267886542167999999999998499831000244321155799999957


Q ss_pred             HCCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             237838998078999999971354405----8039971889
Q gi|255764510|r  164 LQNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       164 ~~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                      ...+++|+..+-..+..+.+.+.+.+.    ++.+++++..
T Consensus       200 ~~~~~ai~~~~d~~A~g~~~al~~~g~~iP~Dv~vig~d~~  240 (305)
T 3huu_A          200 SHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTS  240 (305)
T ss_dssp             -CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
T ss_conf             99976554566477777999999849998872599822885


No 62 
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=59.98  E-value=7.5  Score=17.10  Aligned_cols=203  Identities=13%  Similarity=0.068  Sum_probs=94.0

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCCCC----CCCCCCCCCCEEEEECH--HH-HHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf             9999999987982999421000007852----00164475879998484--67-99988620013630004158999976
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDRES----VFLAMQQSYGAIAITSS--ES-LSTLPANFCRHTPIFAIGEASACLAR   85 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~----~~~~~~~~~d~iiftS~--~a-v~~~~~~~~~~~~~~~vg~~t~~~~~   85 (232)
                      ....+.++++|++.+....   ......    +........|+||+.+.  .+ ...+......+.|+..+.......-.
T Consensus        22 ~~~~~~a~~~G~~~~~~~~---~~~~~~q~~~i~~li~~~vDgIii~~~~~~~~~~~i~~a~~~gipvv~~d~~~~~~~~   98 (306)
T 2vk2_A           22 NVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK   98 (306)
T ss_dssp             HHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSCG
T ss_pred             HHHHHHHHHCCCEEEEEEC---CCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf             9999999986998999959---9999999999999997698999990788211599999999769819998145566677


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCH-------HHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf             41012235444545678999864220--12777538972156756201-------4689846982567688750468999
Q gi|255764510|r   86 QKGFTQIFHGKDNSINLAKIIVEQKV--LFTPQKPLIYLGGKPRNFHF-------EDYLIEHKIPLRVIDCYYSQDIAYP  156 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~~vl~~~g~~~~~~l-------~~~L~~~g~~v~~~~vY~~~~~~~~  156 (232)
                      ........   .+.......+.+...  ....+..++++.|.......       .+.|.+.+ .......+........
T Consensus        99 ~~~~~~v~---~~~~~~g~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~R~~g~~~~l~~~~-~~~~~~~~~~~~~~~~  174 (306)
T 2vk2_A           99 SLYMTTVT---ADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP-NIKIIRSQSGDFTRSK  174 (306)
T ss_dssp             GGSSEEEE---CCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCT-TEEEEEEEECTTCHHH
T ss_pred             CCEEEEEE---CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCHHH
T ss_conf             73034683---3708878889999998537787338863277776089999999999998669-9850145522100478


Q ss_pred             H-HHHHHHH------CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             8-8999862------37838998078999999971354405----8039971--88999999976996699879999889
Q gi|255764510|r  157 E-TTMKNLL------QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCL--SNNIASAIPASYKNVVTVACFPKETS  223 (232)
Q Consensus       157 ~-~~~~~~~------~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~  223 (232)
                      . .....++      .++++|+..+...+....+.+...+.    ++.++++  ++.+.+.++ .|.-...+...|..-+
T Consensus       175 ~~~~~~~~l~~~~~~p~i~ai~~~~d~~a~g~~~al~~~G~~~~~di~i~g~D~~~~~~~~i~-~g~~~~tv~~~~~~~~  253 (306)
T 2vk2_A          175 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMM-DGEANASVELTPNMAG  253 (306)
T ss_dssp             HHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHH-TTCCCEEEECCSCCHH
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH-CCCCEEEEECCHHHHH
T ss_conf             999999999873258863158735829999999999983999999579999998299999987-6996699958899999


No 63 
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1}
Probab=59.31  E-value=7.7  Score=17.03  Aligned_cols=106  Identities=3%  Similarity=-0.133  Sum_probs=55.7

Q ss_pred             CCEEEEEC--CC---CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEEC--HHHHH---HHHH
Q ss_conf             75389721--56---756201468984698256768875046899988999862--3783899807--89999---9997
Q gi|255764510|r  116 QKPLIYLG--GK---PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYA--RSSVL---YFFS  183 (232)
Q Consensus       116 ~~~vl~~~--g~---~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S--~~~v~---~~~~  183 (232)
                      ..+|++-+  ++   .+...+...|+..||.|..+-..      .+.+.+....  .++|.|.+++  .....   .+.+
T Consensus        18 k~rvvia~~~~D~HdiG~~~va~~l~~~G~eV~~LG~~------~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~   91 (161)
T 2yxb_A           18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA   91 (161)
T ss_dssp             SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             98799980498624788999999999789889978977------899999999986699899985576644899999999


Q ss_pred             HCCHHH-CCEEEEEC---CHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf             135440-58039971---8899999997699669987999988999998
Q gi|255764510|r  184 LPLPAK-ISAAFLCL---SNNIASAIPASYKNVVTVACFPKETSLLKLL  228 (232)
Q Consensus       184 ~~~~~~-~~~~~~~i---g~~tA~~~~~~g~~~~~va~~p~~~~ll~al  228 (232)
                      .+...+ .++.+++-   .....+.+++.|...+.-+.. +.+..++-+
T Consensus        92 ~L~~~g~~~i~i~vGG~~~~~d~~~l~~~Gvd~vF~pgt-~~~e~v~~l  139 (161)
T 2yxb_A           92 KLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGT-SLGEIIEKV  139 (161)
T ss_dssp             HHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTC-CHHHHHHHH
T ss_pred             HHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCC-CHHHHHHHH
T ss_conf             999759999879996687988899999779888849989-999999999


No 64 
>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125}
Probab=59.28  E-value=7.7  Score=17.02  Aligned_cols=202  Identities=11%  Similarity=0.035  Sum_probs=98.6

Q ss_pred             HHHHHHHCCCCEEEECCEEEECCC--CCCCCCCCCCCCEEEEECHH---HHHHHHHHHCCCCCEECCCHHHHHHHHHHCC
Q ss_conf             999999879829994210000078--52001644758799984846---7999886200136300041589999764101
Q gi|255764510|r   15 TQEKIQKMGYIPVMMPLSYFIHDR--ESVFLAMQQSYGAIAITSSE---SLSTLPANFCRHTPIFAIGEASACLARQKGF   89 (232)
Q Consensus        15 ~~~~L~~~G~~~i~~Pli~i~~~~--~~~~~~~~~~~d~iiftS~~---av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~   89 (232)
                      +....+++|+++...-.-+-.+-.  ...........|+||+.+..   ....+......++++.++.....    ....
T Consensus        26 ~~~aa~~~g~~l~~~~~~~~d~~~q~~~l~~~i~~~~dgIii~~~d~~~~~~~l~~~~~~gIpvv~~d~~~~----~~~~  101 (305)
T 3g1w_A           26 FEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAP----DSHA  101 (305)
T ss_dssp             HHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCT----TSCC
T ss_pred             HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC----CCCC
T ss_conf             999999729989999799999999999999999769899999788567689999999976995688730443----3454


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCC------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHH
Q ss_conf             22354445456789998642201-2777538972156756------20146898469825676887504689998-8999
Q gi|255764510|r   90 TQIFHGKDNSINLAKIIVEQKVL-FTPQKPLIYLGGKPRN------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMK  161 (232)
Q Consensus        90 ~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~vl~~~g~~~~------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~  161 (232)
                      .. ... .+.........+.... ......++++.+....      .-+.+.|++.+..++.+.++......... ....
T Consensus       102 ~~-~v~-~d~~~~g~~aa~~l~~~~~~~~~~~~~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (305)
T 3g1w_A          102 HS-FLG-TNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAH  179 (305)
T ss_dssp             SC-EEE-CCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHH
T ss_pred             CE-EEC-CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             13-305-6718899999999999730367517852243217889999999999986899731123147875788999999


Q ss_pred             HHH---CCCCEEEEECHHHHHHHHHHCCHHHC--CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             862---37838998078999999971354405--8039971--88999999976996699879999889
Q gi|255764510|r  162 NLL---QNADAILFYARSSVLYFFSLPLPAKI--SAAFLCL--SNNIASAIPASYKNVVTVACFPKETS  223 (232)
Q Consensus       162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~  223 (232)
                      .++   .++|+|+..+...+....+.+...+.  ++.++++  ++.+.+.+++..+. ..+...|...+
T Consensus       180 ~~l~~~p~~~~I~~~~d~~a~g~~~al~~~g~~~~v~vvg~d~~~~~~~~i~~g~i~-atv~~~~~~~G  247 (305)
T 3g1w_A          180 QLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEGIIS-ATLAQGTWNMG  247 (305)
T ss_dssp             HHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHTTSSC-EEEEECHHHHH
T ss_pred             HHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCE-EEEECCHHHHH
T ss_conf             998508986079955848999999999975999982999948989999999859956-99928999999


No 65 
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=59.07  E-value=5.5  Score=17.88  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHCCCCEEEECCEE
Q ss_conf             6999999998798299942100
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSY   33 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~   33 (232)
                      ++.+...|++.|.++...=|.+
T Consensus        22 ~~~~~~~l~~~G~eV~v~DLy~   43 (273)
T 1d4a_A           22 KEAAAAALKKKGWEVVESDLYA   43 (273)
T ss_dssp             HHHHHHHHHHTTCEEEEEETTT
T ss_pred             HHHHHHHHHHCCCEEEEEECCC
T ss_conf             8510789997899799998733


No 66 
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=58.01  E-value=8.1  Score=16.89  Aligned_cols=95  Identities=15%  Similarity=0.008  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEECHHHHHHH--HHHCCHHHCCEE--EEECCHHHH
Q ss_conf             620146898469825676887504689998899986-237838998078999999--971354405803--997188999
Q gi|255764510|r  128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYARSSVLYF--FSLPLPAKISAA--FLCLSNNIA  202 (232)
Q Consensus       128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S~~~v~~~--~~~~~~~~~~~~--~~~ig~~tA  202 (232)
                      .++..+.+++.|+.+    +|   -.....+.+..+ +++.+.++.+.+.-..++  ...+.....+..  .-+..+..+
T Consensus        39 d~~~~~~~~~~g~~~----i~---GD~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~l~p~~~iiar~~~~~~~  111 (140)
T 3fwz_A           39 SRTRVDELRERGVRA----VL---GNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEV  111 (140)
T ss_dssp             CHHHHHHHHHTTCEE----EE---SCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHH
T ss_pred             CCHHHHHHHHCCCEE----EE---CCCCCHHHHHHHCHHHHCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             807750156539658----85---15899999997274451899998798899999999999978998499998799999


Q ss_pred             HHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             999976996699879999889999986
Q gi|255764510|r  203 SAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       203 ~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      +.+++.|...++.+..-.-..|.+.|.
T Consensus       112 ~~l~~~G~~~vi~~~~~~a~~l~~~l~  138 (140)
T 3fwz_A          112 AYITERGANQVVMGEREIARTMLELLE  138 (140)
T ss_dssp             HHHHHTTCSEEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEECHHHHHHHHHHHHHC
T ss_conf             999977989999889999999999744


No 67 
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815}
Probab=57.98  E-value=8.1  Score=16.89  Aligned_cols=178  Identities=11%  Similarity=0.037  Sum_probs=88.8

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCC----CCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHC
Q ss_conf             99999998798299942100000785----20016447587999848467-99988620013630004158999976410
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRE----SVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKG   88 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~----~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~   88 (232)
                      .+...+++.|+..+.+..-.-.....    .+....-...|++|+.+... -..+......+.|+..++....    ...
T Consensus        29 gi~~~~~~~g~~~~i~~~~~~~~~~e~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~i~~~~~----~~~  104 (290)
T 2rgy_A           29 QTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDELHRMHPKMVFLNRAFD----ALP  104 (290)
T ss_dssp             HHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSEEEESSCCT----TSG
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCC----CCC
T ss_conf             9999999869989999688986309999999999984899889996565897999999964997899906778----886


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHH
Q ss_conf             122354445456789998642201277753897215675620-------146898469825676887504689998-899
Q gi|255764510|r   89 FTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTM  160 (232)
Q Consensus        89 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~  160 (232)
                      ...+.   .+.......+.+.... .+.+++.++.|......       +.+.+.++|..+....++......... ...
T Consensus       105 ~~~V~---~D~~~~~~~a~~~L~~-~G~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (290)
T 2rgy_A          105 DASFC---PDHRRGGELAAATLIE-HGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAAT  180 (290)
T ss_dssp             GGEEC---CCHHHHHHHHHHHHHH-TTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHH
T ss_pred             CCEEE---ECHHHHHHHHHHHHHH-HCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHH
T ss_conf             87898---5669999999999998-3985162177873222067777788888997099865022014688889999999


Q ss_pred             HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             9862---37838998078999999971354405----803997188
Q gi|255764510|r  161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      ..++   .++++|+.+|...+..+.+.+...+.    ++.+++++.
T Consensus       181 ~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~dv~vig~d~  226 (290)
T 2rgy_A          181 CQLLESKAPFTGLFCANDTMAVSALARFQQLGISVPGDVSVIGYDD  226 (290)
T ss_dssp             HHHHHHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred             HHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             7520025676338853738888899999986998999618999798


No 68 
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=56.30  E-value=8.6  Score=16.73  Aligned_cols=57  Identities=7%  Similarity=-0.052  Sum_probs=29.0

Q ss_pred             EEEEEC--CHHH----HHHHHHHHHHCCCCEEEECCEEEECCCC-CC--CCCCCCCCCEEEEECHH
Q ss_conf             389858--9688----6999999998798299942100000785-20--01644758799984846
Q gi|255764510|r    2 YIVITR--PIKK----ALRTQEKIQKMGYIPVMMPLSYFIHDRE-SV--FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         2 ~ilitR--p~~~----a~~~~~~L~~~G~~~i~~Pli~i~~~~~-~~--~~~~~~~~d~iiftS~~   58 (232)
                      ||||.-  |.+.    +..+++.+++.|.++...=|-...+.+. ++  ....+...|.|||-+|-
T Consensus         3 KiLvi~ahP~~~~s~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~dv~~~~~~l~~AD~iV~~~P~   68 (192)
T 3f2v_A            3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPI   68 (192)
T ss_dssp             CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEEC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEECCH
T ss_conf             599998089923579999999999955996399986101589821099999999858999997665


No 69 
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.25A {Salmonella typhimurium LT2} SCOP: c.23.16.9
Probab=56.15  E-value=7.7  Score=17.03  Aligned_cols=46  Identities=20%  Similarity=0.083  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf             88699999999879829994210000078520016447587999848
Q gi|255764510|r   10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS   56 (232)
Q Consensus        10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS   56 (232)
                      +.+..+...|...|+++.++|.-+.... .+.....+.+||.|||.-
T Consensus        40 ~~~~~l~~al~~~~~~v~~~p~~~~~~~-fP~~~e~L~~yD~vIl~D   85 (256)
T 2gk3_A           40 EGATWLLECLRKGGVDIDYMPAHTVQIA-FPESIDELNRYDVIVISD   85 (256)
T ss_dssp             ESCHHHHHHHHHTTCEEEEECHHHHHHC-CCCSHHHHHTCSEEEEES
T ss_pred             CCHHHHHHHHHHCCCEEEEECCHHHHHH-CCCCHHHHHHCCEEEECC
T ss_conf             6058899766543935887142134454-763687783179999805


No 70 
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=55.63  E-value=8.9  Score=16.65  Aligned_cols=168  Identities=10%  Similarity=-0.004  Sum_probs=80.5

Q ss_pred             CEEEEECCHHHHHHHHHHHHHC--CCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-----HHHHHHHHHCCCCCE
Q ss_conf             9389858968869999999987--982999421000007852001644758799984846-----799988620013630
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKM--GYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-----SLSTLPANFCRHTPI   73 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~--G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-----av~~~~~~~~~~~~~   73 (232)
                      |||++.-..++...+.+.+.+.  .+++...+-    ... +.......++|+|+.-+..     ..+.+.....+-+..
T Consensus         2 ~KIl~~~~~~~~~~~~~~~~~~~~~~ev~~~~~----~~~-~e~~~~~~~~d~i~~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK----LLT-PETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSS----CCC-TTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCC----CCC-HHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCEEEEE
T ss_conf             779998358324899999997689979998999----999-899998389988999368988999998544079669998


Q ss_pred             ECCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH------------------HH-HH------CCCCCCEEEEECCCC
Q ss_conf             004158--9999764101223544454567899986------------------42-20------127775389721567
Q gi|255764510|r   74 FAIGEA--SACLARQKGFTQIFHGKDNSINLAKIIV------------------EQ-KV------LFTPQKPLIYLGGKP  126 (232)
Q Consensus        74 ~~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~------------------~~-~~------~~~~~~~vl~~~g~~  126 (232)
                      ..+|-.  -..++.+.|......+...+...++...                  +. +.      ....++.+.++.-..
T Consensus        77 ~~~G~d~iD~~~~~~~gI~v~n~~~~~~~~vAE~~~~~il~~~R~~~~~~~~~~~~~~~~~~~~g~~l~gk~vgIiG~G~  156 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGH  156 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSH
T ss_pred             CCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCC
T ss_conf             87624631499998789589978987868999999999999865425899999827876478775240288899992465


Q ss_pred             CCCCHHHHHHHCCCEEEEEEEEEECCCCC------CHHHHHHHHCCCCEEEEECHH
Q ss_conf             56201468984698256768875046899------988999862378389980789
Q gi|255764510|r  127 RNFHFEDYLIEHKIPLRVIDCYYSQDIAY------PETTMKNLLQNADAILFYARS  176 (232)
Q Consensus       127 ~~~~l~~~L~~~g~~v~~~~vY~~~~~~~------~~~~~~~~~~~~d~i~f~S~~  176 (232)
                      ....+.+.|...|.+|..   |...+.+.      ....+.+++++.|+|++.=|.
T Consensus       157 IG~~va~~l~~fg~~V~~---~d~~~~~~~~~~~~~~~~l~~ll~~aDiv~~~lPl  209 (333)
T 1j4a_A          157 IGQVFMQIMEGFGAKVIT---YDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPD  209 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEE---ECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCC
T ss_pred             CCHHHHHHHCCCCCCEEE---ECCCCCCCHHCCCCCCCCHHHHHHHCCEEEEECCC
T ss_conf             147488763366770110---07877710210560038799998649989991689


No 71 
>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 1g20_A* 1g21_A* 3k1a_A* 1fp4_A* 1qgu_A* 1qh1_A* 1qh8_A* 1h1l_A*
Probab=55.02  E-value=9.1  Score=16.59  Aligned_cols=192  Identities=8%  Similarity=-0.049  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCCE----ECCCHHHHH
Q ss_conf             6886999999998798299942100000785200164475879998484679998862001--3630----004158999
Q gi|255764510|r    9 IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR--HTPI----FAIGEASAC   82 (232)
Q Consensus         9 ~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~~----~~vg~~t~~   82 (232)
                      ..+...+.++|++.|++++....-..    .-.++........-+..++.+..++...+.+  +.|+    +-....|.+
T Consensus       231 ~gd~~ei~~lL~~~Gi~v~~~~~g~~----t~eei~~~~~A~lniv~~~~~~~~~A~~Lee~~GiP~i~~~~~G~~~T~~  306 (491)
T 1m1n_A          231 GGDAWSSRILLEEMGLRCVAQWSGDG----SISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIE  306 (491)
T ss_dssp             TTTTHHHHHHHHHTTCEEEEEEETTC----CHHHHHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCC----CHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHH
T ss_conf             55799999999975997599878999----89999861077399985778999999999997598633023587378999


Q ss_pred             HHHHHCCCCCCCCCCCHHH-----HH---HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf             9764101223544454567-----89---998642201277753897215675620146898469825676887504689
Q gi|255764510|r   83 LARQKGFTQIFHGKDNSIN-----LA---KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA  154 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~-----~~---~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~  154 (232)
                      .+++.............+.     ..   ..+. .......++++.+..|......+...|+..|..|.... |...   
T Consensus       307 ~Lr~ia~~~g~~~~~~~E~~Ia~e~~~~~~~l~-~~~~~L~GKrv~i~~g~~~~~~l~~~l~ElGmevv~~~-~~~~---  381 (491)
T 1m1n_A          307 SLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVA-KYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTG-YEFA---  381 (491)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEEE-ESSC---
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE-ECCC---
T ss_conf             999999985872467899999999999999999-99998679718996786007999999998699799996-0678---


Q ss_pred             CCHHHHHHHHC--CCCEEEEEC--HHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEE
Q ss_conf             99889998623--783899807--89999999713544058039971889999999769966998
Q gi|255764510|r  155 YPETTMKNLLQ--NADAILFYA--RSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTV  215 (232)
Q Consensus       155 ~~~~~~~~~~~--~~d~i~f~S--~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~v  215 (232)
                       ..+.......  +.+.+++..  ......+++...+     -++.-|.+-...+++.|..-+.+
T Consensus       382 -~~~d~~~~~~~~~~~~~iv~d~~~~el~~~i~~~kp-----DLiig~~~~k~~a~k~gIP~~~~  440 (491)
T 1m1n_A          382 -HNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKP-----DLIGSGIKEKFIFQKMGIPFREM  440 (491)
T ss_dssp             -CHHHHHTTTTTSCTTCEEEESCBHHHHHHHHHHHCC-----SEEEECHHHHHHHHHTTCCEEES
T ss_pred             -CHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCC-----CEEEECCCHHHHHHHCCCCEEEC
T ss_conf             -878999999867998689668999999999985499-----99997972289999839997107


No 72 
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=53.72  E-value=9.5  Score=16.46  Aligned_cols=29  Identities=10%  Similarity=0.076  Sum_probs=24.1

Q ss_pred             CEEEEECC-HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             93898589-688699999999879829994
Q gi|255764510|r    1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=. ..-+..+++.|.+.|++++.+
T Consensus         1 MkIlV~GatG~iG~~lv~~L~~~G~~V~~~   30 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAV   30 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             969999989589999999999787989999


No 73 
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=52.83  E-value=9.9  Score=16.38  Aligned_cols=198  Identities=12%  Similarity=-0.013  Sum_probs=102.2

Q ss_pred             EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC-CCC----EECCC
Q ss_conf             8985896886999999998798299942100000785200164475879998484679998862001-363----00041
Q gi|255764510|r    3 IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR-HTP----IFAIG   77 (232)
Q Consensus         3 ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~-~~~----~~~vg   77 (232)
                      ++-..+..+...+..+|++.|+++...+-     -....++........++..++..-........+ ..+    .....
T Consensus       188 i~G~~~~~d~~ei~rlL~~~GI~v~~~~p-----~~~~~~l~~~~~~~~~i~~~p~~~~~a~~le~r~g~p~~~~~PiG~  262 (437)
T 3aek_A          188 VVGALPDVVEDQCLSLLTQLGVGPVRMLP-----ARRSDIEPAVGPNTRFILAQPFLGETTGALERRGAKRIAAPFPFGE  262 (437)
T ss_dssp             EESCCCHHHHHHHHHHHHHTTCCCEEEES-----CSSGGGCCCBCTTCEEEESSTTCHHHHHHHHHTTCEECCCCCSCHH
T ss_pred             EECCCCCCHHHHHHHHHHHCCCEEEEECC-----CCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             41467840699999999986997899838-----9878889744666578874688999999999846966437897756


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCH----HH---HHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH-CCCEEEEEEEEE
Q ss_conf             5899997641012235444545----67---899986422012777538972156756201468984-698256768875
Q gi|255764510|r   78 EASACLARQKGFTQIFHGKDNS----IN---LAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIE-HKIPLRVIDCYY  149 (232)
Q Consensus        78 ~~t~~~~~~~~~~~~~~~~~~~----~~---~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~-~g~~v~~~~vY~  149 (232)
                      ..|.+.+++.............    +.   ....+.. ......++++.+..+....-.+...|.+ .|..|..+-.+.
T Consensus       263 egT~~wL~~Ia~~~Gi~~e~ve~~i~~e~~r~~~aL~~-~~~~L~GKrv~i~~d~~l~~~larfL~~elGmevv~vgt~~  341 (437)
T 3aek_A          263 EGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKAIAA-HLETLTGKSLFMFPDSQLEIPLARFLARECGMKTTEIATPF  341 (437)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-THHHHTTCEEEECSSSSCHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             99999999999884887455888876578899999999-99870799899828951789999999986397777873556


Q ss_pred             ECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCE
Q ss_conf             046899988999862378389980789999999713544058039971889999999769966
Q gi|255764510|r  150 SQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNV  212 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~  212 (232)
                      ...  ........++.. +..+... ..+...++.+...+.+  ++.-|...|..+++.|+..
T Consensus       342 ~~~--~~~~~e~~~L~~-~~~I~e~-~d~~~~l~~i~~~~PD--LvI~g~~~a~pl~~~g~~~  398 (437)
T 3aek_A          342 LHK--AIMAPDLALLPS-NTALTEG-QDLEAQLDRHEAINPD--LTVCGLGLANPLEAKGHAT  398 (437)
T ss_dssp             CCH--HHHHHHHTTSBT-TCEEEEE-CCHHHHHHHHHHHCCS--EEEECHHHHHHHHTTTCCE
T ss_pred             CCH--HHHHHHHHHCCC-CCEEEEC-CCHHHHHHHHHHHCCC--EEECCCCCCCHHHHCCCCE
T ss_conf             887--889999974689-9889848-9989999999960989--9976643466275549740


No 74 
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=51.23  E-value=9.7  Score=16.41  Aligned_cols=50  Identities=16%  Similarity=-0.023  Sum_probs=31.4

Q ss_pred             CEEEEECCHH----HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             9389858968----86999999998798299942100000785200164475879998484
Q gi|255764510|r    1 MYIVITRPIK----KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus         1 M~ilitRp~~----~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      |+|+.--...    -+..+++.+++.|.++...++.+..       ..++.++|.|+|-|+
T Consensus         1 i~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~-------~~~~~~~d~iv~g~p   54 (138)
T 5nul_A            1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN-------IDELLNEDILILGCS   54 (138)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC-------HHHHTTCSEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-------HHHHCCCCEEEEEEC
T ss_conf             999999988079999999999876459737999830066-------325454998999973


No 75 
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=51.21  E-value=10  Score=16.22  Aligned_cols=29  Identities=21%  Similarity=0.125  Sum_probs=23.4

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858968-8699999999879829994
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=-.. -+..+++.|.+.|+++..+
T Consensus         1 MkIlV~GatG~iG~~l~~~L~~~G~~V~~~   30 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAI   30 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             949999988189999999999786989999


No 76 
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12}
Probab=50.90  E-value=11  Score=16.19  Aligned_cols=177  Identities=11%  Similarity=0.071  Sum_probs=85.8

Q ss_pred             HHHHHHHHCCCCEEEECCEEE-ECCCCCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             999999987982999421000-007852001644758799984846--79998862001363000415899997641012
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYF-IHDRESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i-~~~~~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      .+...+++.|++.+....-.- +..............|++|+.+..  .-...........++..++...    ......
T Consensus        42 gi~~~~~~~g~~l~l~~~~~~~~~~~~~l~~~~~~~~dgiIi~~~~~~~~~~~~~~~~~~ipvV~~~~~~----~~~~~~  117 (296)
T 3brq_A           42 HAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRL----RKNSSH  117 (296)
T ss_dssp             HHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCC----SSSGGG
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECC----CCCCCC
T ss_conf             9999999859999999689997999999999997098737752666775899999996499889996124----778898


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHH
Q ss_conf             2354445456789998642201277753897215675620-------14689846982567688750468999-889998
Q gi|255764510|r   91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMKN  162 (232)
Q Consensus        91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~~  162 (232)
                      .+.   .+.......+..... ..+..++.++.|....+.       +.+.+.+.|.......++........ ......
T Consensus       118 ~v~---~d~~~~~~~~~~~l~-~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (296)
T 3brq_A          118 SVW---CDHKQTSFNAVAELI-NAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEM  193 (296)
T ss_dssp             EEC---CCHHHHHHHHHHHHH-HTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHH
T ss_pred             EEE---ECCHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf             899---673677888899987-6324503999468777505778889999999859987610243155452207899999


Q ss_pred             HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC
Q ss_conf             62---37838998078999999971354405----80399718
Q gi|255764510|r  163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS  198 (232)
Q Consensus       163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig  198 (232)
                      ++   .++++|+..|...+..+.+.+...+.    ++.++++.
T Consensus       194 ~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~di~vig~D  236 (296)
T 3brq_A          194 LLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD  236 (296)
T ss_dssp             HHTC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred             HHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf             9856888745885685999999999997399898642010348


No 77 
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=50.84  E-value=11  Score=16.19  Aligned_cols=102  Identities=11%  Similarity=0.065  Sum_probs=48.8

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEE-------------EE-CCCCCCHHHHHHH-HCCCCEEEEECHHHH
Q ss_conf             77753897215675620146898469825676887-------------50-4689998899986-237838998078999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCY-------------YS-QDIAYPETTMKNL-LQNADAILFYARSSV  178 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY-------------~~-~~~~~~~~~~~~~-~~~~d~i~f~S~~~v  178 (232)
                      .+.++|+++.++.....+.+.|.+.|..|.-+.-=             .. .......+.+..+ +++.+.++...+.--
T Consensus        17 ~~~~~IiI~G~g~~G~~ia~~L~~~g~~vvvId~d~~~~~~l~~~~~~~~i~GD~~d~~~L~~a~i~~a~~vI~~t~dDe   96 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS   96 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred             HCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHHCCHHHCCEEEECCCCHH
T ss_conf             15981999899899999999999789979999468898443120334136977760078887418224689999149849


Q ss_pred             HH-HHHHC-CHHHCCEEE--EECCHHHHHHHHHCCCCEEEEC
Q ss_conf             99-99713-544058039--9718899999997699669987
Q gi|255764510|r  179 LY-FFSLP-LPAKISAAF--LCLSNNIASAIPASYKNVVTVA  216 (232)
Q Consensus       179 ~~-~~~~~-~~~~~~~~~--~~ig~~tA~~~~~~g~~~~~va  216 (232)
                      .+ +..+. ........+  .+-.+...+.+++.|.. ++.+
T Consensus        97 ~Nl~~~l~ak~~~~~~~iIar~~~~~~~~~~~~~G~~-vI~p  137 (155)
T 2g1u_A           97 TNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIK-TICP  137 (155)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE-EECH
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-EECC
T ss_conf             9999999999987998399998888899999977999-9861


No 78 
>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica}
Probab=50.02  E-value=4.5  Score=18.42  Aligned_cols=61  Identities=7%  Similarity=-0.061  Sum_probs=42.5

Q ss_pred             EEEECHHHHHHHHHHCCH---HHCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             998078999999971354---4058039971889999999769966998799998899999861
Q gi|255764510|r  170 ILFYARSSVLYFFSLPLP---AKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       170 i~f~S~~~v~~~~~~~~~---~~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      +-|.++++...|.++...   .+....+..++|.+++.+...|.....+.-.+|.++=++.+++
T Consensus        53 v~~idssgl~~l~~~~~~~~~~g~~~~l~g~~p~v~~~l~~~g~d~~~~~~~~tl~~Al~~l~~  116 (123)
T 2vy9_A           53 LEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALNLQKGLDKLKN  116 (123)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHTTCCSTTSEEESSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHH
T ss_conf             9745199999999999999976998999938999999999959986782566899999999986


No 79 
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=48.01  E-value=12  Score=15.92  Aligned_cols=31  Identities=0%  Similarity=-0.220  Sum_probs=17.2

Q ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEECCE
Q ss_conf             3898589688699999999879829994210
Q gi|255764510|r    2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLS   32 (232)
Q Consensus         2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli   32 (232)
                      +||+..+...+.++...++.+|.+++.+|+-
T Consensus        85 ~Vlv~~~g~f~~~~~~~a~~~G~~v~~i~~~  115 (392)
T 2z9v_A           85 VVLNLASGVYGKGFGYWAKRYSPHLLEIEVP  115 (392)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHCSCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             7999537617899999999719847995168


No 80 
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=46.78  E-value=12  Score=15.80  Aligned_cols=29  Identities=14%  Similarity=0.153  Sum_probs=24.2

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858968-8699999999879829994
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=... -+..+++.|.+.|++++.+
T Consensus         1 MKIlITGatGfIG~~lv~~L~~~g~~V~~~   30 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVL   30 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             969998888879999999999786989999


No 81 
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=46.28  E-value=13  Score=15.76  Aligned_cols=29  Identities=17%  Similarity=0.126  Sum_probs=24.0

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858968-8699999999879829994
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=... =+..++..|.+.|++++.+
T Consensus        30 MKILVTGatGfIGs~Lv~~L~~~g~~Vi~~   59 (379)
T 2c5a_A           30 LKISITGAGGFIASHIARRLKHEGHYVIAS   59 (379)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             979998999889999999999783989999


No 82 
>3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A*
Probab=45.99  E-value=13  Score=15.73  Aligned_cols=14  Identities=7%  Similarity=-0.007  Sum_probs=9.4

Q ss_pred             CCCCCCEEEEECHH
Q ss_conf             44758799984846
Q gi|255764510|r   45 MQQSYGAIAITSSE   58 (232)
Q Consensus        45 ~~~~~d~iiftS~~   58 (232)
                      .+...|.|||.||-
T Consensus        84 ~i~~AD~iV~~~Pi   97 (212)
T 3keg_A           84 ELFDSDLLVISTPM   97 (212)
T ss_dssp             HHHTCSEEEEEEEC
T ss_pred             HHHHCCEEEEEECC
T ss_conf             99858989998066


No 83 
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=43.56  E-value=13  Score=15.68  Aligned_cols=32  Identities=13%  Similarity=0.054  Sum_probs=23.3

Q ss_pred             EEEEE--CCHHHHHHH-HHHHHHCCCCEEEECCEE
Q ss_conf             38985--896886999-999998798299942100
Q gi|255764510|r    2 YIVIT--RPIKKALRT-QEKIQKMGYIPVMMPLSY   33 (232)
Q Consensus         2 ~ilit--Rp~~~a~~~-~~~L~~~G~~~i~~Pli~   33 (232)
                      +|+++  ||.-++.++ +..|.+.|+++...+--.
T Consensus         6 ~V~v~EsRP~~eG~~ltA~~L~~~GI~vtli~Dsa   40 (191)
T 1w2w_B            6 HVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSS   40 (191)
T ss_dssp             EEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf             89990698313779999999998699879995338


No 84 
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp}
Probab=42.90  E-value=14  Score=15.44  Aligned_cols=66  Identities=14%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC----CCHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf             77753897215675620146898469825676887504689----9988999862378389980789999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA----YPETTMKNLLQNADAILFYARSSVL  179 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~----~~~~~~~~~~~~~d~i~f~S~~~v~  179 (232)
                      ..++++.++........+.+.|+..|..|..+.-+......    .....+.+++.+.|+|++.-|.+-+
T Consensus       138 l~gktvgIiG~G~IG~~va~~l~~fg~~v~~~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~Plt~~  207 (324)
T 3hg7_A          138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRE  207 (324)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSS
T ss_pred             CCCCEEEEEEEEECCCHHHHCCCCCCCEEECCCCCCCCCHHHHCCCCCCCHHCCCCCCCCCEEECCCCCC
T ss_conf             6588889996650550231024676755640323433210110132100010044456643120589842


No 85 
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=42.42  E-value=14  Score=15.39  Aligned_cols=28  Identities=7%  Similarity=-0.109  Sum_probs=12.8

Q ss_pred             EEEEE----CCHHHHHHHHHHHHH---CCCCEEEE
Q ss_conf             38985----896886999999998---79829994
Q gi|255764510|r    2 YIVIT----RPIKKALRTQEKIQK---MGYIPVMM   29 (232)
Q Consensus         2 ~ilit----Rp~~~a~~~~~~L~~---~G~~~i~~   29 (232)
                      |||+.    |+...+..+++.+.+   .|.++..+
T Consensus         4 KIl~i~GS~R~~s~t~~la~~~~~~l~~~~ev~~~   38 (192)
T 3fvw_A            4 RILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYL   38 (192)
T ss_dssp             EEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             49999899999987999999999875799779998


No 86 
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} SCOP: c.2.1.2
Probab=41.98  E-value=13  Score=15.57  Aligned_cols=30  Identities=17%  Similarity=0.083  Sum_probs=24.3

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC
Q ss_conf             9389858968-86999999998798299942
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||||=... =+..++..|.+.|++++.+-
T Consensus        13 MKILItGatGfIG~~lv~~L~~~g~~V~~~~   43 (292)
T 1vl0_A           13 MKILITGANGQLGREIQKQLKGKNVEVIPTD   43 (292)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             7589989998899999999986879899932


No 87 
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=41.37  E-value=15  Score=15.30  Aligned_cols=30  Identities=10%  Similarity=-0.060  Sum_probs=24.0

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC
Q ss_conf             9389858968-86999999998798299942
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||||=... =+..++..|.+.|++++.+=
T Consensus        13 MKILVtGatGfIG~~l~~~Ll~~g~~V~~~~   43 (321)
T 2pk3_A           13 MRALITGVAGFVGKYLANHLTEQNVEVFGTS   43 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             6799967888899999999998849899980


No 88 
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=41.20  E-value=15  Score=15.28  Aligned_cols=95  Identities=12%  Similarity=0.047  Sum_probs=50.5

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECC----EE---------EECC-CCCC---CCCCCCCCCEEEEECHHHHH-H
Q ss_conf             9389858968869999999987982999421----00---------0007-8520---01644758799984846799-9
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPL----SY---------FIHD-RESV---FLAMQQSYGAIAITSSESLS-T   62 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pl----i~---------i~~~-~~~~---~~~~~~~~d~iiftS~~av~-~   62 (232)
                      |||+|.=-..-+..++..|.+.|++++..=-    ++         +... ..+.   ....+.+++.+|.+..+-.. .
T Consensus         1 m~iiI~G~g~~g~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~i~gD~~~~~~L~~a~i~~a~~~ia~t~~D~~N~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf             98999998899999999999789989999999999999998526307854543268887664046654764158788889


Q ss_pred             ---HHH-HHCCCCCEE--CCCHHHHHHHHHHCCCCCCCC
Q ss_conf             ---886-200136300--041589999764101223544
Q gi|255764510|r   63 ---LPA-NFCRHTPIF--AIGEASACLARQKGFTQIFHG   95 (232)
Q Consensus        63 ---~~~-~~~~~~~~~--~vg~~t~~~~~~~~~~~~~~~   95 (232)
                         ... ......+++  +....-...+...+......+
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~vi~~  119 (218)
T 3l4b_C           81 FIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNL  119 (218)
T ss_dssp             HHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCH
T ss_pred             HHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCEEECH
T ss_conf             999999998599749999624233444212455389888


No 89 
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=41.01  E-value=15  Score=15.26  Aligned_cols=41  Identities=20%  Similarity=0.295  Sum_probs=28.0

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             9999999987982999421000007852001644758799984846
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      ....+.+++.|+.++.+|..+..     .....+...|.|+||-..
T Consensus        31 ~~yv~~l~~aGa~pv~ip~~~~~-----~~~~~l~~~DGvll~GG~   71 (254)
T 3fij_A           31 QRYVDAIQKVGGFPIALPIDDPS-----TAVQAISLVDGLLLTGGQ   71 (254)
T ss_dssp             HHHHHHHHHHTCEEEEECCCCGG-----GHHHHHHTCSEEEECCCS
T ss_pred             HHHHHHHHHCCCEEEEECCCCHH-----HHHHHHHHCCEEEECCCC
T ss_conf             99999999869989997589858-----899888656949965887


No 90 
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=39.34  E-value=16  Score=15.10  Aligned_cols=180  Identities=12%  Similarity=0.077  Sum_probs=82.1

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHH--HHHHHHCCCCCEECCCHHHHHHHHHHCC
Q ss_conf             99999999879829994210000078-52001644758799984846799--9886200136300041589999764101
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLS--TLPANFCRHTPIFAIGEASACLARQKGF   89 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~--~~~~~~~~~~~~~~vg~~t~~~~~~~~~   89 (232)
                      ......+++.|++++..+.-.-.... ...........|++|+.+..--.  ..........++.+++.....    ...
T Consensus        27 ~gi~~~~~~~gy~~~l~~~~~~~~~e~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~----~~~  102 (289)
T 1dbq_A           27 EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAK----ADF  102 (289)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCC----SSS
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCC----CCC
T ss_conf             9999999986999999968999899999999998559886653100123258999985269978994366667----546


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHH
Q ss_conf             223544454567899986422012777538972156756-------20146898469825676887504689998-8999
Q gi|255764510|r   90 TQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMK  161 (232)
Q Consensus        90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~  161 (232)
                      .....  ........+.... ....+.+++.++.+....       ..+.+.+..+|........+......... ....
T Consensus       103 ~~v~~--~~~~~~~~~a~~~-~~~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (289)
T 1dbq_A          103 TDAVI--DNAFEGGYMAGRY-LIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQ  179 (289)
T ss_dssp             CEEEE--ECHHHHHHHHHHH-HHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHH
T ss_pred             CEEEE--CCHHHHHHHHHHH-HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             63995--1578889999999-98738863764378854305678887899999972899883079964665456999999


Q ss_pred             HHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             862---37838998078999999971354405----803997188
Q gi|255764510|r  162 NLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      .++   ..+|+|+..+-..+..+...+...+.    ++.+++++.
T Consensus       180 ~ll~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~vP~di~Vig~d~  224 (289)
T 1dbq_A          180 QILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN  224 (289)
T ss_dssp             HHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred             HHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             998289998089988709988778999985256996089995687


No 91 
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=39.27  E-value=13  Score=15.67  Aligned_cols=47  Identities=15%  Similarity=0.045  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHCCCCEEEECCEEEE--CC---------CC--CCCCCCCCCCCEEEEECHH
Q ss_conf             699999999879829994210000--07---------85--2001644758799984846
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSYFI--HD---------RE--SVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~i~--~~---------~~--~~~~~~~~~~d~iiftS~~   58 (232)
                      ++..++-+++.|+++...-+-+..  +.         .+  .....++.++|.|||-||-
T Consensus        21 a~ai~~Ga~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~AD~IilgSP~   80 (199)
T 2zki_A           21 AKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPT   80 (199)
T ss_dssp             HHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEEEECCC
T ss_conf             999999887649889999766667088886336553478530679999858978996575


No 92 
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=39.15  E-value=16  Score=15.09  Aligned_cols=40  Identities=10%  Similarity=-0.036  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             86999999998798299942100000785200164475879998484
Q gi|255764510|r   11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      =+..+++.|++.|.++...++-+..       ..++.++|.|||-|+
T Consensus        16 iA~~ia~~l~~~g~~~~~~~~~~~~-------~~dl~~~d~ii~gsp   55 (137)
T 2fz5_A           16 MANEIEAAVKAAGADVESVRFEDTN-------VDDVASKDVILLGCP   55 (137)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETTSCC-------HHHHHTCSEEEEECC
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHH-------HHHHHHHHHEEEECC
T ss_conf             9999999987568854122088988-------888886443067324


No 93 
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=38.73  E-value=16  Score=15.05  Aligned_cols=97  Identities=15%  Similarity=0.062  Sum_probs=38.4

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHH---HCCCEEEEEEEEEECCCCCCH-HHH-HHHH-CCCCEEEEECHHHHHHHHHHCCH
Q ss_conf             77753897215675620146898---469825676887504689998-899-9862-37838998078999999971354
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLI---EHKIPLRVIDCYYSQDIAYPE-TTM-KNLL-QNADAILFYARSSVLYFFSLPLP  187 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~---~~g~~v~~~~vY~~~~~~~~~-~~~-~~~~-~~~d~i~f~S~~~v~~~~~~~~~  187 (232)
                      ..+..|+-.|..   ......|+   +.|..   ..||-+...+... ..+ +.+. .++++.++. -+++..+++.+..
T Consensus       120 ~dg~~ILTh~~S---~tV~~~l~~A~~~gk~---f~V~v~EsrP~~~G~~la~~L~~~GI~vt~I~-Dsav~~~m~~vd~  192 (315)
T 3ecs_A          120 KDGATILTHAYS---RVVLRVLEAAVAAKKR---FSVYVTESQPDLSGKKMAKALCHLNVPVTVVL-DAAVGYIMEKADL  192 (315)
T ss_dssp             CTTEEEEECSCC---HHHHHHHHHHHTTTCC---EEEEEECCTTTTHHHHHHHHHHTTTCCEEEEC-GGGHHHHGGGCSE
T ss_pred             CCCCEEEEECCC---HHHHHHHHHHHHCCCE---EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-HHHHHHHHHCCCE
T ss_conf             999999974880---9999999999986990---89999579986327999999997799879976-5799999750888


Q ss_pred             HHC--------CEEEEECCHHH-HHHHHHCCCCEEEECC
Q ss_conf             405--------80399718899-9999976996699879
Q gi|255764510|r  188 AKI--------SAAFLCLSNNI-ASAIPASYKNVVTVAC  217 (232)
Q Consensus       188 ~~~--------~~~~~~ig~~t-A~~~~~~g~~~~~va~  217 (232)
                      --.        .-.+--+|... |-.++..+.....+|+
T Consensus       193 VlvGAd~V~~nG~v~nkiGT~~iA~~Ak~~~vPvyV~ae  231 (315)
T 3ecs_A          193 VIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAE  231 (315)
T ss_dssp             EEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred             EEEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             998201896388885564189999998763997698325


No 94 
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=37.73  E-value=17  Score=14.95  Aligned_cols=34  Identities=6%  Similarity=-0.080  Sum_probs=24.0

Q ss_pred             ECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             7188999999976996699879999889999986
Q gi|255764510|r  196 CLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       196 ~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      .||+.-...+.+.|++++.+.+.-+.+..++.|+
T Consensus        75 ~IG~~a~~~L~~~GI~~i~~~~g~~I~eaL~~L~  108 (145)
T 1p90_A           75 SIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQ  108 (145)
T ss_dssp             BCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf             4694799999988978998489980999999999


No 95 
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=37.37  E-value=17  Score=14.92  Aligned_cols=29  Identities=21%  Similarity=0.093  Sum_probs=23.6

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858968-8699999999879829994
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=-.. -+..++..|.+.|++++.+
T Consensus        21 MkILVTGgtGfiG~~lv~~Ll~~G~~V~~~   50 (330)
T 2pzm_A           21 MRILITGGAGCLGSNLIEHWLPQGHEILVI   50 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHGGGTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             769998987789999999999786989999


No 96 
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=37.31  E-value=17  Score=14.91  Aligned_cols=29  Identities=14%  Similarity=0.138  Sum_probs=24.0

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858968-8699999999879829994
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=-.. -+..++..|.+.|++++.+
T Consensus         1 MkILItGatGfiG~~lv~~Ll~~g~~V~~~   30 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             969998988789999999999784989999


No 97 
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=37.18  E-value=17  Score=14.90  Aligned_cols=75  Identities=9%  Similarity=-0.010  Sum_probs=38.1

Q ss_pred             CHHHHHHH-HCCCCEEEEE--CHHHHHHHHHHCCHHHCCEEE--EECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             98899986-2378389980--789999999713544058039--971889999999769966998799998899999861
Q gi|255764510|r  156 PETTMKNL-LQNADAILFY--ARSSVLYFFSLPLPAKISAAF--LCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       156 ~~~~~~~~-~~~~d~i~f~--S~~~v~~~~~~~~~~~~~~~~--~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      .++.+..+ +++.+.++.+  +......+............+  .+-.+.-.+.+++.|...++.+....-+.|.+.|..
T Consensus        59 d~~~L~~a~i~~a~~vii~~~~d~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~Gad~Vv~p~~~~a~~l~~~l~~  138 (144)
T 2hmt_A           59 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSD  138 (144)
T ss_dssp             CHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCC
T ss_conf             88888630223499999981886899999999998779985999994688899999779999998799999999999764


No 98 
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=37.06  E-value=17  Score=14.89  Aligned_cols=45  Identities=11%  Similarity=0.141  Sum_probs=30.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf             93898589688699999999879829994210000078520016447587999848
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS   56 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS   56 (232)
                      |||-|.-=...-...++.|++.|+++....           ...++.++|.||+.-
T Consensus        21 mkIgVi~~~Gn~~s~~~aL~~lG~~~~iv~-----------~~~~l~~~D~lILPG   65 (208)
T 2iss_D           21 MKIGVLGVQGDVREHVEALHKLGVETLIVK-----------LPEQLDMVDGLILPG   65 (208)
T ss_dssp             CEEEEECSSSCHHHHHHHHHHTTCEEEEEC-----------SGGGGGGCSEEEECS
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECC
T ss_conf             789999568879999999998899899989-----------989982599999999


No 99 
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.124.1.5
Probab=36.91  E-value=18  Score=14.87  Aligned_cols=102  Identities=10%  Similarity=-0.105  Sum_probs=42.2

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHHHC---
Q ss_conf             77538972156756201468984698256768875046899988999862-37838998078999999971354405---
Q gi|255764510|r  115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPAKI---  190 (232)
Q Consensus       115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~~~---  190 (232)
                      .+..|+-.|....--.+.....++|.... +.|=++.|.-.-.....++. .++++.++.- +++..++.....--.   
T Consensus       109 dg~~IlT~~~S~tv~~~l~~a~~~g~~~~-V~v~EsrP~~~G~~lA~eL~~~Gi~vtlI~D-~a~~~~m~~~d~VlvGAd  186 (276)
T 1vb5_A          109 DGDVIITHSFSSTVLEIIRTAKERKKRFK-VILTESSPDYEGLHLARELEFSGIEFEVITD-AQMGLFCREASIAIVGAD  186 (276)
T ss_dssp             TTEEEECCSCCHHHHHHHHHHHHTTCCEE-EEEECCTTTTHHHHHHHHHHHTTCCEEEECG-GGHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCHHHHHHHHHHCCCCEEEECH-HHHHHHHHHCCEEEEEEE
T ss_conf             99989997980899999999998799579-9994489775409999999875998089647-899998530787998524


Q ss_pred             -----CEEEEECCHHH-HHHHHHCCCCEEEECCC
Q ss_conf             -----80399718899-99999769966998799
Q gi|255764510|r  191 -----SAAFLCLSNNI-ASAIPASYKNVVTVACF  218 (232)
Q Consensus       191 -----~~~~~~ig~~t-A~~~~~~g~~~~~va~~  218 (232)
                           ...+--+|... |-.++..|.....+++.
T Consensus       187 ~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~  220 (276)
T 1vb5_A          187 MITKDGYVVNKAGTYLLALACHENAIPFYVAAET  220 (276)
T ss_dssp             EECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred             EEECCCCEEEHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             8954898865230799999998569986997034


No 100
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=36.69  E-value=13  Score=15.73  Aligned_cols=56  Identities=9%  Similarity=-0.137  Sum_probs=31.4

Q ss_pred             CEEEEECCHHH-----HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             93898589688-----69999999987982999421000007852001644758799984846
Q gi|255764510|r    1 MYIVITRPIKK-----ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilitRp~~~-----a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      |||||.=-+|+     +.++...+.+.|.++...-+.....+  ......+..+|.|||.+|-
T Consensus         1 MKvLII~aHP~~~~S~~~~~~~~~~~~~~~v~i~dL~~~~dv--~~e~~~l~~aD~iV~~~P~   61 (177)
T 3ha2_A            1 MQTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVADFNV--EQEQSLLLQNDRIILEFPL   61 (177)
T ss_dssp             CCEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCTTCCH--HHHHHHHHTCSEEEEEEEC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHHHCCEEEEECCH
T ss_conf             949999979890674999999999953894599744453479--9999999858989998682


No 101
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=36.62  E-value=18  Score=14.84  Aligned_cols=157  Identities=13%  Similarity=0.008  Sum_probs=72.5

Q ss_pred             HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH--H-HHHHHHHCCCCCE--ECCCHH--HHHHHHHH
Q ss_conf             999999879829994210000078520016447587999848467--9-9988620013630--004158--99997641
Q gi|255764510|r   15 TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES--L-STLPANFCRHTPI--FAIGEA--SACLARQK   87 (232)
Q Consensus        15 ~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a--v-~~~~~~~~~~~~~--~~vg~~--t~~~~~~~   87 (232)
                      +.+.|++.|++++..+=-+   .++......+.+.|.+|..+...  + +-......+-.-+  ..+|-.  -.+++.+.
T Consensus        59 ~r~~le~~G~e~v~~~~~~---~~~~~~~~~l~Dad~vi~~~~~~~~i~~e~l~~ap~LK~I~~~g~G~D~IDl~aa~~~  135 (393)
T 2nac_A           59 LRKYLESNGHTLVVTSDKD---GPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDR  135 (393)
T ss_dssp             CHHHHHHTTCEEEEESCCS---STTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHT
T ss_pred             HHHHHHHCCCEEEEECCCC---CCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCEEEEECCEECCHHCHHHHHHC
T ss_conf             6999997898899947998---8568998405776599854777774199999369998099989833132059889868


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHH---------------------------HHCCCCCCEEEEECCCCCCCCHHHHHHHCCC
Q ss_conf             0122354445456789998642---------------------------2012777538972156756201468984698
Q gi|255764510|r   88 GFTQIFHGKDNSINLAKIIVEQ---------------------------KVLFTPQKPLIYLGGKPRNFHFEDYLIEHKI  140 (232)
Q Consensus        88 ~~~~~~~~~~~~~~~~~ll~~~---------------------------~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~  140 (232)
                      |......+...+...+|...-.                           ......++.+.++........+.+.|...|.
T Consensus       136 gI~V~n~~g~~~~sVAE~~i~liL~l~R~~~~~~~~~~~g~w~~~~~~~~~~~l~gk~vGIiG~G~IG~~va~~l~~fg~  215 (393)
T 2nac_A          136 NVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV  215 (393)
T ss_dssp             TCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999889848199999999999999863308899998089752335565421115379987672015689998521585


Q ss_pred             EEEEEEEEEECCCCCCH---------HHHHHHHCCCCEEEEECHHH
Q ss_conf             25676887504689998---------89998623783899807899
Q gi|255764510|r  141 PLRVIDCYYSQDIAYPE---------TTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       141 ~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~i~f~S~~~  177 (232)
                      .|   ..|.........         ..+.+++...|+|++.-|..
T Consensus       216 ~V---~~~d~~~~~~~~~~~~~~~~~~sl~ell~~sDvV~lh~PLt  258 (393)
T 2nac_A          216 HL---HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLH  258 (393)
T ss_dssp             EE---EEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCC
T ss_pred             EE---EEEECCCCHHHHHHCCCCEEECCHHHHHHHCCEEEEECCCC
T ss_conf             69---99714467355321023023146888764156355505787


No 102
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.41  E-value=18  Score=14.82  Aligned_cols=180  Identities=16%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             HHHHHHHHCCCCEEEECCEEEEC-CCCCCCCCCCCCCCEEEEECHHHHHHHHH-HHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             99999998798299942100000-78520016447587999848467999886-20013630004158999976410122
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIH-DRESVFLAMQQSYGAIAITSSESLSTLPA-NFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~-~~~~~~~~~~~~~d~iiftS~~av~~~~~-~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
                      .+.+.+++.|++++.+..-.-.. .............|+||+.+......... ....+.|+..++....   .......
T Consensus        34 ~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~pvV~~~~~~~---~~~~~~~  110 (292)
T 3k4h_A           34 GISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYD---RKDEITY  110 (292)
T ss_dssp             HHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHTTCCEEEESCCSS---CTTTSCE
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC---CCCCCCE
T ss_conf             9999999869999998289988999999999983798789997166885899999974999899756568---8888867


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHH-HHHH
Q ss_conf             354445456789998642201277753897215675620-------14689846982567688750468999889-9986
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETT-MKNL  163 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~-~~~~  163 (232)
                      +.   .+....+..+.+... ..+..++.++.+......       +...+...+.......+............ ...+
T Consensus       111 V~---~d~~~~~~~~~~~L~-~~g~~~i~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (292)
T 3k4h_A          111 VD---NDNYTAAREVAEYLI-SLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEEL  186 (292)
T ss_dssp             EE---CCHHHHHHHHHHHHH-HTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHH
T ss_pred             EE---CCHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHH
T ss_conf             81---289999999999999-81997089980687652288899999999997288887243102542114899999999


Q ss_pred             H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             2---37838998078999999971354405----8039971889
Q gi|255764510|r  164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                      +   ..+++|+..|-..+..+.+.+...+.    ++.+++++..
T Consensus       187 l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~v~g~d~~  230 (292)
T 3k4h_A          187 MGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNA  230 (292)
T ss_dssp             HTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred             HHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCH
T ss_conf             95399982899737187899999999828988720331566867


No 103
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A*
Probab=36.06  E-value=18  Score=14.79  Aligned_cols=29  Identities=28%  Similarity=0.378  Sum_probs=23.9

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858968-8699999999879829994
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=... -+..++..|.+.|++++.+
T Consensus         1 MKILItGatGfiG~~l~~~L~~~g~~V~~~   30 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVV   30 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             969998888689999999999786989999


No 104
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=35.71  E-value=18  Score=14.76  Aligned_cols=98  Identities=8%  Similarity=0.007  Sum_probs=52.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEE
Q ss_conf             545678999864220127775389721567-----56201468984698256768875046899988999862-378389
Q gi|255764510|r   97 DNSINLAKIIVEQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAI  170 (232)
Q Consensus        97 ~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i  170 (232)
                      +........+..........+++.++..+.     ....+.+.+.+.|+.+....-|... ..+....+..+. .++|+|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~~~~~~~~~~~~~d~v  197 (346)
T 1usg_A          119 GLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG-EKDFSALIARLKKENIDFV  197 (346)
T ss_dssp             CCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT-CCCCHHHHHHHHHTTCCEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCCHHHHHHHHHHCCCCEE
T ss_conf             565156666778776413562268843786034556766631010579779999934887-6412589999985699999


Q ss_pred             EEE-CHHHHHHHHHHCCHHHCCEEEE
Q ss_conf             980-7899999997135440580399
Q gi|255764510|r  171 LFY-ARSSVLYFFSLPLPAKISAAFL  195 (232)
Q Consensus       171 ~f~-S~~~v~~~~~~~~~~~~~~~~~  195 (232)
                      ++. ++.....|++.+...+....++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~g~~~~~~  223 (346)
T 1usg_A          198 YYGGYYPEMGQMLRQARSVGLKTQFM  223 (346)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHCCCCCCEE
T ss_conf             99366289999999998639987478


No 105
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=35.66  E-value=18  Score=14.75  Aligned_cols=141  Identities=15%  Similarity=0.053  Sum_probs=79.1

Q ss_pred             ECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf             00415899997641012235444545678999864220127775389721567562014689846982567688750468
Q gi|255764510|r   74 FAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDI  153 (232)
Q Consensus        74 ~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~  153 (232)
                      .++|-++..++..+......   ....+..+++     ....+++|.++..   -+-+.+.|++ ++   .+.+.++.+.
T Consensus        82 rslglAaiNAl~~~~~~~~~---~~~~d~~~~~-----~~~~~~kV~vVG~---~p~l~~~l~~-~~---~l~V~E~~p~  146 (249)
T 3npg_A           82 RTLGVAAINAVSQYYIDLRE---AKWIDVTELI-----QQDEIKRIAIIGN---MPPVVRTLKE-KY---EVYVFERNMK  146 (249)
T ss_dssp             HHHHHHHHHHHHHHHCCCTT---CBCCCHHHHH-----HTSCCSEEEEESC---CHHHHHHHTT-TS---EEEEECCSGG
T ss_pred             HHHHHHHHHHHHHCCCCCCC---CCCCCHHHHH-----CCCCCCEEEEECC---CHHHHHHHHC-CC---CEEEEECCCC
T ss_conf             99999999854311245687---4445656530-----2268986999858---7689999853-49---8899978987


Q ss_pred             C-----CCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCE-EEEECCHHHH---HHHHHCCCCEEEECCCCCHHHH
Q ss_conf             9-----99889998623783899807899999997135440580-3997188999---9999769966998799998899
Q gi|255764510|r  154 A-----YPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISA-AFLCLSNNIA---SAIPASYKNVVTVACFPKETSL  224 (232)
Q Consensus       154 ~-----~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~-~~~~ig~~tA---~~~~~~g~~~~~va~~p~~~~l  224 (232)
                      .     .........+.+.|+|++|.++-+..=++.+.....+. ..+-+||+|-   +.+...|...+.=..-.|.+.+
T Consensus       147 ~~~~~~~p~~~~~~~Lp~aD~ViiTGsTlvN~Tl~~lL~~~~~a~~vvl~GPStp~~P~~l~~~Gv~~l~g~~v~d~~~~  226 (249)
T 3npg_A          147 LWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKA  226 (249)
T ss_dssp             GCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHCCEEEEEEEEHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEEEECHHHH
T ss_conf             78888688778798874099999986303317989999737568779998999644779996389867967787379999


Q ss_pred             HHHHH
Q ss_conf             99986
Q gi|255764510|r  225 LKLLP  229 (232)
Q Consensus       225 l~al~  229 (232)
                      +++|+
T Consensus       227 ~~~i~  231 (249)
T 3npg_A          227 LVKLK  231 (249)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99997


No 106
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=35.48  E-value=19  Score=14.73  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=23.8

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858968-8699999999879829994
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=-.. =+..++..|.+.|.+++.+
T Consensus         3 MkILItGatGfIG~~l~~~L~~~g~~v~~~   32 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIIL   32 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             449998999789999999999786989999


No 107
>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583}
Probab=35.34  E-value=19  Score=14.72  Aligned_cols=169  Identities=11%  Similarity=0.142  Sum_probs=87.1

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH-HHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf             9999999879829994210000078520016447587999848467-999886200136300041589999764101223
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES-LSTLPANFCRHTPIFAIGEASACLARQKGFTQI   92 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~   92 (232)
                      .+.+.+.++|++++.+..      ........-...|++|+.+... -..+........|+..++....    ..+...+
T Consensus        29 gi~~~~~~~g~~~~~~~~------~~~~~~l~~~~vdgiIl~~~~~~~~~~~~l~~~~iPvV~~~~~~~----~~~~~~V   98 (277)
T 3cs3_A           29 GIKKGLALFDYEMIVCSG------KKSHLFIPEKMVDGAIILDWTFPTKEIEKFAERGHSIVVLDRTTE----HRNIRQV   98 (277)
T ss_dssp             HHHHHHHTTTCEEEEEES------TTTTTCCCTTTCSEEEEECTTSCHHHHHHHHHTTCEEEESSSCCC----STTEEEE
T ss_pred             HHHHHHHHCCCEEEEEEC------HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCEE
T ss_conf             999999986998999808------587999996699989997277997999999974998999877557----8999889


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHH-HHHHH
Q ss_conf             54445456789998642201277753897215675620-------14689846982567688750468999889-99862
Q gi|255764510|r   93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETT-MKNLL  164 (232)
Q Consensus        93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~-~~~~~  164 (232)
                      .   .+.......+...... .+..++.++.|......       +.+.+.+.|..+..  ++ .......... ...+.
T Consensus        99 ~---~D~~~~~~~~~~~l~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~  171 (277)
T 3cs3_A           99 L---LDNRGGATQAIEQFVN-VGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEI--IQ-GDFTEPSGYAAAKKIL  171 (277)
T ss_dssp             E---ECHHHHHHHHHHHHHH-TTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEE--EE-CCSSHHHHHHHHHHHT
T ss_pred             E---ECCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEE--EC-CCCCCCHHHHHHHHHH
T ss_conf             9---7758999999999997-39814888517876522888878899999983997202--10-2222004899999986


Q ss_pred             ----CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             ----37838998078999999971354405----803997188
Q gi|255764510|r  165 ----QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       165 ----~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                          .++++|+-++-..+..+.+.+...+.    ++.+++++.
T Consensus       172 ~~~~~~~~ai~~~~d~~A~gv~~~l~~~g~~vP~dv~vig~d~  214 (277)
T 3cs3_A          172 SQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDN  214 (277)
T ss_dssp             TSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSC
T ss_pred             HCCCCCCEEEEECCHHHHHCHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             3367887078717878863558999974998898438999888


No 108
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=34.96  E-value=19  Score=14.68  Aligned_cols=58  Identities=10%  Similarity=0.109  Sum_probs=29.1

Q ss_pred             CEEEEE----CCHHHHHHH----HHHHHHC------CCCEEEECCEE-------EECC-------------CCCC--CCC
Q ss_conf             938985----896886999----9999987------98299942100-------0007-------------8520--016
Q gi|255764510|r    1 MYIVIT----RPIKKALRT----QEKIQKM------GYIPVMMPLSY-------FIHD-------------RESV--FLA   44 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~----~~~L~~~------G~~~i~~Pli~-------i~~~-------------~~~~--~~~   44 (232)
                      |||++.    |+...+.++    .+.+++.      |.++-.+-+-+       -...             ++..  ...
T Consensus         1 MkI~vI~GS~R~~s~s~~la~~~~~~~~~~~~~~~~g~ev~~idl~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (191)
T 1t0i_A            1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR   80 (191)
T ss_dssp             CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98999978999887349999999999998663168995799997001588865531113555455344458599999999


Q ss_pred             CCCCCCEEEEECHH
Q ss_conf             44758799984846
Q gi|255764510|r   45 MQQSYGAIAITSSE   58 (232)
Q Consensus        45 ~~~~~d~iiftS~~   58 (232)
                      .+..+|.+||.||.
T Consensus        81 ~l~~AD~iv~~tP~   94 (191)
T 1t0i_A           81 IVNALDIIVFVTPQ   94 (191)
T ss_dssp             HHHTCSEEEEEEEC
T ss_pred             HHHHCCCCEEECCC
T ss_conf             99848887896754


No 109
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=34.54  E-value=19  Score=14.64  Aligned_cols=49  Identities=16%  Similarity=0.167  Sum_probs=27.4

Q ss_pred             CCCCEEE-EECHHHHHHHHHHCCHHHCCEEEE---ECCHHHHHHHHHCCCCEE
Q ss_conf             3783899-807899999997135440580399---718899999997699669
Q gi|255764510|r  165 QNADAIL-FYARSSVLYFFSLPLPAKISAAFL---CLSNNIASAIPASYKNVV  213 (232)
Q Consensus       165 ~~~d~i~-f~S~~~v~~~~~~~~~~~~~~~~~---~ig~~tA~~~~~~g~~~~  213 (232)
                      ..+|.++ |..+..+...++.+...+....++   ...+...+.+++.|++.+
T Consensus        69 ~~vDlv~i~vp~~~v~~~v~e~~~~g~~~v~~q~G~~~~e~~~~a~~~Gi~vI  121 (140)
T 1iuk_A           69 EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGIRHPEFEKALKEAGIPVV  121 (140)
T ss_dssp             SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf             98738999808899999999999629898998989689999999999599799


No 110
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=33.18  E-value=20  Score=14.51  Aligned_cols=115  Identities=10%  Similarity=-0.022  Sum_probs=57.1

Q ss_pred             CCEEEE-ECCCCCCCC----HHHHHHHCC-CEEEEEEEEEECCC--CCCHHHHHHHH--CCCCEEEEECH-----H---H
Q ss_conf             753897-215675620----146898469-82567688750468--99988999862--37838998078-----9---9
Q gi|255764510|r  116 QKPLIY-LGGKPRNFH----FEDYLIEHK-IPLRVIDCYYSQDI--AYPETTMKNLL--QNADAILFYAR-----S---S  177 (232)
Q Consensus       116 ~~~vl~-~~g~~~~~~----l~~~L~~~g-~~v~~~~vY~~~~~--~~~~~~~~~~~--~~~d~i~f~S~-----~---~  177 (232)
                      ..+|+. --|.+..+.    +...+...| +-+++...|+...+  ..+++.+....  .++|+|.++|-     .   .
T Consensus       120 ~~~vv~a~~g~D~H~~G~~~v~~~~~~aG~~~~e~~~~feVi~LG~~vp~ee~v~~a~e~~aD~VgvS~llt~~~~h~~~  199 (262)
T 1xrs_B          120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQN  199 (262)
T ss_dssp             CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
T ss_conf             86799984086444778999999998758643002684499968889999999999986499999997521552337899


Q ss_pred             HHHHHHHCCHHHC--CEEEEECCHHH-HHHHHHCCCCEEEECCCCCHHH----HHHHHHHC
Q ss_conf             9999971354405--80399718899-9999976996699879999889----99998614
Q gi|255764510|r  178 VLYFFSLPLPAKI--SAAFLCLSNNI-ASAIPASYKNVVTVACFPKETS----LLKLLPLR  231 (232)
Q Consensus       178 v~~~~~~~~~~~~--~~~~~~ig~~t-A~~~~~~g~~~~~va~~p~~~~----ll~al~~~  231 (232)
                      +..+.+.+...+.  ++.++|-|+.+ .+.+++.|...+.- +....+.    +.+.+.+|
T Consensus       200 ~~~li~~l~e~gl~~~v~vivGG~~~~~~~a~~lGaDavfg-~gt~~~dva~~l~~~l~~r  259 (262)
T 1xrs_B          200 MTHLIELLEAEGLRDRFVLLCGGPRINNEIAKELGYDAGFG-PGRFADDVATFAVKTLNDR  259 (262)
T ss_dssp             HHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTTTCSEEEC-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf             99999999966998895899989989999999779988769-9988999999999999987


No 111
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=31.46  E-value=22  Score=14.33  Aligned_cols=28  Identities=21%  Similarity=0.285  Sum_probs=15.2

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9389858968869999999987982999
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVM   28 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~   28 (232)
                      |||+|.=-..-+..+++.|.+.|++++.
T Consensus         5 m~ViI~G~G~~G~~la~~L~~~g~~v~v   32 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVL   32 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf             9999999899999999999977995899


No 112
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=30.91  E-value=22  Score=14.28  Aligned_cols=14  Identities=14%  Similarity=0.131  Sum_probs=4.9

Q ss_pred             HHHHHHHHCCCCEE
Q ss_conf             88999862378389
Q gi|255764510|r  157 ETTMKNLLQNADAI  170 (232)
Q Consensus       157 ~~~~~~~~~~~d~i  170 (232)
                      +..+...+..+.+|
T Consensus       190 p~~l~~~L~~ipGV  203 (229)
T 1lk5_A          190 PLDMEIELNTIPGV  203 (229)
T ss_dssp             HHHHHHHHHTSTTE
T ss_pred             HHHHHHHHHCCCCE
T ss_conf             99999998789869


No 113
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str}
Probab=30.81  E-value=22  Score=14.27  Aligned_cols=43  Identities=14%  Similarity=0.098  Sum_probs=18.1

Q ss_pred             CCCCEEEEECHHHHHHHHHHHC----CCCC--EECCCHHHHHHHHHHCC
Q ss_conf             7587999848467999886200----1363--00041589999764101
Q gi|255764510|r   47 QSYGAIAITSSESLSTLPANFC----RHTP--IFAIGEASACLARQKGF   89 (232)
Q Consensus        47 ~~~d~iiftS~~av~~~~~~~~----~~~~--~~~vg~~t~~~~~~~~~   89 (232)
                      .+-+.|.+-|...+.++...+.    ...+  ....+..|...+...|.
T Consensus        40 ~dG~~IGLGsGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~~~~~Gi   88 (255)
T 3hhe_A           40 EDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGV   88 (255)
T ss_dssp             CTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC
T ss_conf             8998999787269999999999998636745998578899999997698


No 114
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=30.46  E-value=22  Score=14.23  Aligned_cols=88  Identities=7%  Similarity=0.027  Sum_probs=54.2

Q ss_pred             CCCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEE----CCCCCCHHHHHHHHCCC-CEEEEECHHHHHHHHHHCCH
Q ss_conf             777538972156-7562014689846982567688750----46899988999862378-38998078999999971354
Q gi|255764510|r  114 TPQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYS----QDIAYPETTMKNLLQNA-DAILFYARSSVLYFFSLPLP  187 (232)
Q Consensus       114 ~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~----~~~~~~~~~~~~~~~~~-d~i~f~S~~~v~~~~~~~~~  187 (232)
                      ...+.|--|+.. +-.+++.+.|+++|+.+..+..---    .|+.   +.+..  .++ .-...-|..+++.+-+.-..
T Consensus       175 k~~GSVAAPTAGLHFt~~ll~~l~~kgi~~~~iTLHVG~GTF~PV~---~~i~~--H~mH~E~~~I~~~t~~~I~~ak~~  249 (345)
T 1wdi_A          175 RRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK---GDPEK--HEMHAEPYAIPEEVAEAVNRAKAE  249 (345)
T ss_dssp             ------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------------CCCEEEEECHHHHHHHHHHHHT
T ss_pred             CCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCC---CCCCC--CCCCCEEEEECHHHHHHHHHHHHC
T ss_conf             6898550676878779999999998698089999963677504544---54346--787653899669999999999974


Q ss_pred             HHCCEEEEECCHHHHHHHHHCC
Q ss_conf             4058039971889999999769
Q gi|255764510|r  188 AKISAAFLCLSNNIASAIPASY  209 (232)
Q Consensus       188 ~~~~~~~~~ig~~tA~~~~~~g  209 (232)
                         .-+++|+|-++..+++...
T Consensus       250 ---g~rIiAVGTT~~RaLEs~~  268 (345)
T 1wdi_A          250 ---GRRVVAVGTTVVRALESAY  268 (345)
T ss_dssp             ---TCCEEEESHHHHHHHHHTE
T ss_pred             ---CCCEEEEECCHHHHHHHHH
T ss_conf             ---9929999240899999999


No 115
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=30.38  E-value=23  Score=14.22  Aligned_cols=27  Identities=7%  Similarity=-0.089  Sum_probs=12.2

Q ss_pred             CEEEEECCC-CCCCCHHHHHHHCCCEEE
Q ss_conf             538972156-756201468984698256
Q gi|255764510|r  117 KPLIYLGGK-PRNFHFEDYLIEHKIPLR  143 (232)
Q Consensus       117 ~~vl~~~g~-~~~~~l~~~L~~~g~~v~  143 (232)
                      -+|++.--+ ..+..+.+.|+..|+.|.
T Consensus        19 mrILvVEDd~~~~~~l~~~L~~~G~~v~   46 (137)
T 2pln_A           19 MRVLLIEKNSVLGGEIEKGLNVKGFMAD   46 (137)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEE
T ss_conf             8899995999999999999998899999


No 116
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.88  E-value=23  Score=14.17  Aligned_cols=99  Identities=11%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCC--------CCHHHHHHHCCCEEEEEEEEEECCCCCCHH--HHHHHH---CCC
Q ss_conf             7899986422012777538972156756--------201468984698256768875046899988--999862---378
Q gi|255764510|r  101 NLAKIIVEQKVLFTPQKPLIYLGGKPRN--------FHFEDYLIEHKIPLRVIDCYYSQDIAYPET--TMKNLL---QNA  167 (232)
Q Consensus       101 ~~~~ll~~~~~~~~~~~~vl~~~g~~~~--------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~--~~~~~~---~~~  167 (232)
                      ....++.+... ..+..++.++.+....        .-+.+.+.++|........+..........  ....++   ..+
T Consensus       173 ~~~~~a~~~L~-~~G~r~i~~l~~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (355)
T 3e3m_A          173 RAAYDMTNALL-ARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDT  251 (355)
T ss_dssp             HHHHHHHHHHH-HTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999-76996299995788777409999871699999859994210022445302344566655687538999


Q ss_pred             CEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHH
Q ss_conf             38998078999999971354405----8039971889
Q gi|255764510|r  168 DAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       168 d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~  200 (232)
                      ++|+.+|...+..++..+...+.    ++.+++++..
T Consensus       252 ~ai~~~~d~~A~g~~~~l~~~g~~vP~disVig~D~~  288 (355)
T 3e3m_A          252 DCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGNF  288 (355)
T ss_dssp             CEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSSCC
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             7688567799999999999859999984399997784


No 117
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=29.65  E-value=23  Score=14.15  Aligned_cols=110  Identities=8%  Similarity=0.066  Sum_probs=62.0

Q ss_pred             CCCCCEEEEE--CCCCCC----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHH
Q ss_conf             2777538972--156756----201468984698256768875046899988999862378389980789-------999
Q gi|255764510|r  113 FTPQKPLIYL--GGKPRN----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVL  179 (232)
Q Consensus       113 ~~~~~~vl~~--~g~~~~----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~  179 (232)
                      ..+.++++++  +..+..    +.+.+.|...|..|+.   |.-..  .....+..-+.+.|+|+|.||.       .+.
T Consensus       249 ~~~~~kv~i~Y~S~~GnT~~~a~~ia~~l~~~g~~v~~---~~~~~--~~~~~~~~~~~~~d~ii~gspt~~~~~~~~~~  323 (402)
T 1e5d_A          249 QKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKL---MWCKA--CHHSQIMSEISDAGAVIVGSPTHNNGILPYVA  323 (402)
T ss_dssp             CCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEE---EETTT--SCHHHHHHHHHTCSEEEEECCCBTTBCCHHHH
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE---EECCC--CCHHHHHHHHHHCCEEEEEECCCCCCCCHHHH
T ss_conf             25567447999389875999999999888655965999---98566--87577788897589699970475886439999


Q ss_pred             HHHHHCCHHHC-CEEEEECC---------HHHHHHHHHCCCC----EEEECCCCCHHHHHHH
Q ss_conf             99971354405-80399718---------8999999976996----6998799998899999
Q gi|255764510|r  180 YFFSLPLPAKI-SAAFLCLS---------NNIASAIPASYKN----VVTVACFPKETSLLKL  227 (232)
Q Consensus       180 ~~~~~~~~~~~-~~~~~~ig---------~~tA~~~~~~g~~----~~~va~~p~~~~ll~a  227 (232)
                      .|++.+..... +..++++|         ....+.+++.|++    .+.+.-.|+++.+-++
T Consensus       324 ~~l~~~~~~~~~~k~~~~Fgs~g~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~  385 (402)
T 1e5d_A          324 GTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQL  385 (402)
T ss_dssp             HHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHHH
T ss_conf             99999854665899899998489883899999999997799895785799617998999999


No 118
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=28.59  E-value=24  Score=14.04  Aligned_cols=29  Identities=14%  Similarity=0.041  Sum_probs=23.5

Q ss_pred             CEEEEECC-HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             93898589-688699999999879829994
Q gi|255764510|r    1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=- ..-+..++..|.+.|+++..+
T Consensus         1 MkVlVtGatG~iG~~lv~~Ll~~g~~V~~~   30 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG   30 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             939999999989999999999783989999


No 119
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=28.20  E-value=25  Score=13.99  Aligned_cols=100  Identities=6%  Similarity=-0.104  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHH-----HHHHHHHHCCHHHC-CEEEEECC
Q ss_conf             756201468984698256768875046899988999862-378389980789-----99999971354405-80399718
Q gi|255764510|r  126 PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARS-----SVLYFFSLPLPAKI-SAAFLCLS  198 (232)
Q Consensus       126 ~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~-----~v~~~~~~~~~~~~-~~~~~~ig  198 (232)
                      .++.++...+...|+.|..-..|.+.     .+....+. ++.++|++.|..     .+..+.+.+...+. ++.+++-|
T Consensus       611 ~~ra~fA~~f~~~Gf~V~~~~~f~tp-----ee~a~aa~es~a~vv~ics~d~~y~~~vp~l~~~Lk~ag~~~i~VilgG  685 (727)
T 1req_A          611 RGQKVIATAYADLGFDVDVGPLFQTP-----EETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGG  685 (727)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTBCH-----HHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEECCCCCCCH-----HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             35999999998589617548888999-----9999999976999999917874558899999999996799885799807


Q ss_pred             ---HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             ---89999999769966998799998899999861
Q gi|255764510|r  199 ---NNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       199 ---~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                         +.-.+.+++.|...++-+.++-.+++.+.|.+
T Consensus       686 ~iP~~d~~~L~~aGV~~if~pgtni~~~~~~~l~~  720 (727)
T 1req_A          686 VIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKK  720 (727)
T ss_dssp             SCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHH
T ss_conf             78878799999779886848998099999999999


No 120
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A*
Probab=27.74  E-value=25  Score=13.95  Aligned_cols=29  Identities=14%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             CEEEEEC----CH------HHHHHHHHHHHHCCCCEEEE
Q ss_conf             9389858----96------88699999999879829994
Q gi|255764510|r    1 MYIVITR----PI------KKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitR----p~------~~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||+.=    |.      .....++..|.++|++|..+
T Consensus         3 MkIl~~~~~~~P~~~GG~~~~~~~La~~L~~~Gh~V~vv   41 (439)
T 3fro_A            3 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVF   41 (439)
T ss_dssp             CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             099998886798567879999999999999769989999


No 121
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=27.37  E-value=25  Score=13.91  Aligned_cols=64  Identities=11%  Similarity=-0.014  Sum_probs=40.7

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHH
Q ss_conf             7775389721567562014689846982567688750468999889998623783899807899
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      ..++++.++........+.+.|+..|.+|..+.-|...........+.+++.+.|+|++.-|.+
T Consensus       122 l~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~l~~ll~~sDvv~~~~Plt  185 (303)
T 1qp8_A          122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN  185 (303)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEECCCCC
T ss_conf             5899999990389999999988735977997448842233323387999972579998616797


No 122
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=27.21  E-value=26  Score=13.89  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=23.4

Q ss_pred             CEEEEECC-HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             93898589-688699999999879829994
Q gi|255764510|r    1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=- ..-+..+++.|.+.|+++..+
T Consensus        22 MkIlI~GasG~iG~~lv~~Ll~~g~~V~~l   51 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAM   51 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             908999998889999999999785989999


No 123
>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=26.76  E-value=26  Score=13.84  Aligned_cols=171  Identities=9%  Similarity=0.050  Sum_probs=83.7

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf             999999987982999421000007-8520016447587999848467999886200136300041589999764101223
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEASACLARQKGFTQI   92 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~~   92 (232)
                      .+...+.++|+.++.++.-.-... ............|++|+.+.+.-...........++..++.....      ...+
T Consensus        29 ~i~~~a~~~g~~~~~~~~~~~~~~e~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~ipvv~~~~~~~~------~~~V  102 (277)
T 3e61_A           29 GVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFIDRINNE------HNGI  102 (277)
T ss_dssp             HHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC------------
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCC------CCEE
T ss_conf             9999999849999999789998999999999986598299952531057999999759988997304799------9979


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-
Q ss_conf             54445456789998642201277753897215675620-------1468984698256768875046899988999862-
Q gi|255764510|r   93 FHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-  164 (232)
Q Consensus        93 ~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-  164 (232)
                      .   .+......+..+... .....++.++.+....+.       +.+.+.+.+........  ..  .........++ 
T Consensus       103 ~---~d~~~~~~~a~~~l~-~~~~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~  174 (277)
T 3e61_A          103 S---TNHFKGGQLQAEVVR-KGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKMLEA--TL--LDNDKKFIDLIK  174 (277)
T ss_dssp             ------HHHHHHHHHHHHH-HTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEEEEG--GG--GGSHHHHHHHHH
T ss_pred             E---ECHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE--CC--HHHHHHHHHHHH
T ss_conf             9---768999999999998-489836999247666522677789999999973997303430--21--148999999986


Q ss_pred             -CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC
Q ss_conf             -37838998078999999971354405----80399718
Q gi|255764510|r  165 -QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS  198 (232)
Q Consensus       165 -~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig  198 (232)
                       .++|+|+-.+-..+..+.+.+...+.    ++.++++.
T Consensus       175 ~~~~~ai~~~~d~~A~g~~~al~~~g~~iP~di~vig~d  213 (277)
T 3e61_A          175 ELSIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGYD  213 (277)
T ss_dssp             HHTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred             CCCCCEEECCCHHHHCCHHHHHHHCCCCCCCEEEEEEEC
T ss_conf             079776760613655260799997499889558999978


No 124
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=26.74  E-value=26  Score=13.84  Aligned_cols=110  Identities=5%  Similarity=-0.071  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEEC-CC----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHH-HHHH-CCCCEEEEECHH-----HHH
Q ss_conf             127775389721-56----75620146898469825676887504689998899-9862-378389980789-----999
Q gi|255764510|r  112 LFTPQKPLIYLG-GK----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTM-KNLL-QNADAILFYARS-----SVL  179 (232)
Q Consensus       112 ~~~~~~~vl~~~-g~----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~-~~~~-~~~d~i~f~S~~-----~v~  179 (232)
                      ...+..+|++-. |.    .++.++.......|+.|..-+.+.|      +++. ..+. ++.++|.+.|..     .|-
T Consensus       600 ~~GrrPrillakmG~dgH~~ga~~iA~~F~d~GfeV~~~~~f~T------peE~a~aA~e~~a~vvgics~d~~h~~lvp  673 (762)
T 2xij_A          600 REGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQT------PREVAQQAVDADVHAVGVSTLAAGHKTLVP  673 (762)
T ss_dssp             HHSSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCC------HHHHHHHHHHTTCSEEEEEECSSCHHHHHH
T ss_pred             HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCC------HHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             82999759996578774410199999999857902852787789------999999999769999999268765688999


Q ss_pred             HHHHHCCHHH-CCEEEEECC---HHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf             9997135440-580399718---89999999769966998799998899999
Q gi|255764510|r  180 YFFSLPLPAK-ISAAFLCLS---NNIASAIPASYKNVVTVACFPKETSLLKL  227 (232)
Q Consensus       180 ~~~~~~~~~~-~~~~~~~ig---~~tA~~~~~~g~~~~~va~~p~~~~ll~a  227 (232)
                      .+.+.+...+ .++.++|-|   +.-.+.+++.|...++-+.++-.+++.+.
T Consensus       674 ~l~~~Lk~~g~~~i~VvvgGviP~~d~~~l~~aGV~~if~pg~~i~~~~~~i  725 (762)
T 2xij_A          674 ELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQV  725 (762)
T ss_dssp             HHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf             9999999669998679980778878899999869887839998299999999


No 125
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} SCOP: c.67.3.1 PDB: 3l5o_A
Probab=25.91  E-value=27  Score=13.74  Aligned_cols=110  Identities=10%  Similarity=-0.013  Sum_probs=64.9

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC
Q ss_conf             777538972156756201468984698256768875046899--988999862378389980789999999713544058
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS  191 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~  191 (232)
                      .++++|.++..-   + +.+.+++.+..   +.+-++.|...  ..+.....+...|+|++|.++-+..=++.+.....+
T Consensus       139 ~~gkkV~vVG~f---P-~i~~~~~~~~~---l~V~E~~p~~g~~p~~~~~~~Lp~~D~viiTGstlvN~Tl~~lL~~~~~  211 (270)
T 2h1q_A          139 VKGKKVGVVGHF---P-HLESLLEPICD---LSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRN  211 (270)
T ss_dssp             TTTSEEEEESCC---T-THHHHHTTTSE---EEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTT
T ss_pred             CCCCEEEEECCC---C-CHHHHHHCCCC---EEEEECCCCCCCCCHHHHHHHHHCCCEEEEEEEHHHCCCHHHHHHHCCC
T ss_conf             579889998886---2-07999853895---7999658887998768889875128899998532541898999974767


Q ss_pred             E-EEEECCHHHH--HHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             0-3997188999--9999769966998799998899999861
Q gi|255764510|r  192 A-AFLCLSNNIA--SAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       192 ~-~~~~ig~~tA--~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      . ..+-+||++-  -.+-+.|...+.=..-.|.+.+++.++.
T Consensus       212 a~~vvlvGPStp~~P~lf~~Gv~~lag~~V~d~~~~~~~i~~  253 (270)
T 2h1q_A          212 ARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAG  253 (270)
T ss_dssp             SSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHC
T ss_conf             776999889841379999538567978897289999999972


No 126
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=25.37  E-value=28  Score=13.68  Aligned_cols=93  Identities=8%  Similarity=-0.047  Sum_probs=50.4

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEE
Q ss_conf             9998642201277753897215675620-------1468984698256768875046899988999862---37838998
Q gi|255764510|r  103 AKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILF  172 (232)
Q Consensus       103 ~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f  172 (232)
                      ...+.... ...+..++.++.|......       +.+.+...|......  +..... ...+.....+   ..+++|+.
T Consensus       162 ~~~a~~~l-~~~G~~~i~~~~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~~~ai~~  237 (333)
T 3jvd_A          162 FFQLTESV-LGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFH--FGHYSV-ESGEEMAQVVFNNGLPDALIV  237 (333)
T ss_dssp             HHHHHHHH-CCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECCSSH-HHHHHHHHHHHHTCCCSEEEE
T ss_pred             HHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEE--ECCCCH-HHHHHHHHHHHCCCCCCEEEE
T ss_conf             77766777-64288036897044210367888999999999759973265--245520-217888999962799874310


Q ss_pred             ECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             078999999971354405----803997188
Q gi|255764510|r  173 YARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       173 ~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      +|...+..+.+.+...+.    ++.++++..
T Consensus       238 ~~d~~A~g~~~al~~~g~~vP~disvig~D~  268 (333)
T 3jvd_A          238 ASPRLMAGVMRAFTRLNVRVPHDVVIGGYDD  268 (333)
T ss_dssp             CCHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             7999999999999984999999879999798


No 127
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=25.34  E-value=28  Score=13.68  Aligned_cols=98  Identities=15%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEE
Q ss_conf             45678999864220127775389721567-----56201468984698256768875046899988999862-3783899
Q gi|255764510|r   98 NSINLAKIIVEQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAIL  171 (232)
Q Consensus        98 ~~~~~~~ll~~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~  171 (232)
                      ........+.+.... ...+++.++..+.     ....+.+.+++.|+.+.....|.... .+....+..+. .++|+|+
T Consensus       124 ~~~~~~~~~~~~l~~-~g~~~vaii~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~-~d~~~~v~~i~~~~~d~v~  201 (364)
T 3lop_A          124 SYQQEIDKMITALVT-IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNT-ANVGPAVDKLLAADVQAIF  201 (364)
T ss_dssp             CHHHHHHHHHHHHHH-TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTS-CCCHHHHHHHHHSCCSEEE
T ss_pred             CHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCHHHHHHHHHHCCCCEEE
T ss_conf             808999999999996-49939999844773038899999865540484599886047777-7789999999825998999


Q ss_pred             EE-CHHHHHHHHHHCCHHHCCEEEEEC
Q ss_conf             80-789999999713544058039971
Q gi|255764510|r  172 FY-ARSSVLYFFSLPLPAKISAAFLCL  197 (232)
Q Consensus       172 f~-S~~~v~~~~~~~~~~~~~~~~~~i  197 (232)
                      +. ++.....|++.+........++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (364)
T 3lop_A          202 LGATAEPAAQFVRQYRARGGEAQLLGL  228 (364)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             EECCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             974789999999999984898769997


No 128
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=25.24  E-value=28  Score=13.67  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=15.1

Q ss_pred             CEEEEE----CCHHHHHHHHHHHHHCCCCE
Q ss_conf             938985----89688699999999879829
Q gi|255764510|r    1 MYIVIT----RPIKKALRTQEKIQKMGYIP   26 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~~~~L~~~G~~~   26 (232)
                      ||||+.    |+.....++++.+.+ |+++
T Consensus         1 MKil~i~GS~r~~s~t~~l~~~~~~-~~e~   29 (174)
T 3gfs_A            1 MNMLVINGTPRKHGRTRIAASYIAA-LYHT   29 (174)
T ss_dssp             --CEEEECCCCTTCHHHHHHHHHHH-HTTC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHH-HCCE
T ss_conf             9899998679988779999999982-0880


No 129
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.56  E-value=29  Score=13.59  Aligned_cols=133  Identities=11%  Similarity=-0.031  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCCE----ECCCHHHHHH
Q ss_conf             886999999998798299942100000785200164475879998484679998862001--3630----0041589999
Q gi|255764510|r   10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR--HTPI----FAIGEASACL   83 (232)
Q Consensus        10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~~----~~vg~~t~~~   83 (232)
                      .+...+.+.|++.|+++...+.-..    .-.++........-+..++.+...+...+.+  +.|+    +.....|.+.
T Consensus       219 ~D~~ei~~lL~~~Gi~v~~~~~g~~----s~eei~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~~~~p~G~~~T~~~  294 (533)
T 1mio_A          219 GDAWEMDRVLEKIGYHVNATLTGDA----TYEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDGIVET  294 (533)
T ss_dssp             SHHHHHHHHHHHHTCEEEEEEETTC----CHHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCC----CHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHH
T ss_conf             3699999999983996489728998----778886376640999956578999999999851955650688781458999


Q ss_pred             HHHHCCCCCCCCC-CCHHH-----HH---HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE
Q ss_conf             7641012235444-54567-----89---99864220127775389721567562014689846982567688
Q gi|255764510|r   84 ARQKGFTQIFHGK-DNSIN-----LA---KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC  147 (232)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~-----~~---~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v  147 (232)
                      ++........... ...+.     ..   +.+.. ......++++.+..|....-.+...|+..|..+.....
T Consensus       295 Lr~ia~~~g~~~~~~~~e~~I~~e~~~~~~~l~~-~~~~L~GKrv~i~~~~~~~~~l~~~l~elGmevv~~g~  366 (533)
T 1mio_A          295 LRDMAKCFDDPELTKRTEEVIAEEIAAIQDDLDY-FKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGF  366 (533)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             9999998589606778999999999999999999-99975797499976726789999999986996999743


No 130
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=24.36  E-value=29  Score=13.57  Aligned_cols=98  Identities=11%  Similarity=0.131  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEE
Q ss_conf             789998642201277753897215675620-------1468984698256768875046899988999862--3783899
Q gi|255764510|r  101 NLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAIL  171 (232)
Q Consensus       101 ~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~  171 (232)
                      ..+..+...... .+..++.++.|......       +.+.+.++|..+....++...............+  .+.+.++
T Consensus       166 ~~~~~a~~~L~~-~G~~ri~~i~~~~~~~~~~~R~~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  244 (332)
T 2o20_A          166 LAAYQSTKKLID-SGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAV  244 (332)
T ss_dssp             HHHHHHHHHHHH-TTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHH-HCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999999999998-1898511762786650688999999999998599999536995563067899999996431465389


Q ss_pred             EECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             8078999999971354405----803997188
Q gi|255764510|r  172 FYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       172 f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      .++-..+..++..+...+.    ++.+++++.
T Consensus       245 ~~~d~~A~g~~~al~~~g~~vp~dv~vig~d~  276 (332)
T 2o20_A          245 VSHDTVAVGLLSAMMDKGVKVPEDFEIISGAN  276 (332)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCTTTTCEEEESSC
T ss_pred             EECHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             84389999999999982987789879999688


No 131
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Probab=24.17  E-value=29  Score=13.55  Aligned_cols=28  Identities=25%  Similarity=0.083  Sum_probs=22.6

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEE
Q ss_conf             9389858968-869999999987982999
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVM   28 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~   28 (232)
                      ||||||=-.. -+..++..|.+.|.+++.
T Consensus         1 MKILVtGatGfiGs~l~~~Ll~~g~~~vi   29 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVV   29 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             96999888868999999999978996899


No 132
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A*
Probab=24.16  E-value=29  Score=13.54  Aligned_cols=28  Identities=14%  Similarity=-0.051  Sum_probs=19.8

Q ss_pred             EEEEECC---HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             3898589---688699999999879829994
Q gi|255764510|r    2 YIVITRP---IKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         2 ~ilitRp---~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      .+|||=-   ..=+...+..|.+.|++++..
T Consensus        32 ~alVTGass~~GIG~aiA~~la~~Ga~Vvi~   62 (296)
T 3k31_A           32 KGVIIGVANDKSLAWGIAKAVCAQGAEVALT   62 (296)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             8999899998649999999999869999999


No 133
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=24.00  E-value=26  Score=13.86  Aligned_cols=41  Identities=12%  Similarity=0.072  Sum_probs=26.8

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             999999987982999421000007852001644758799984846
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      ...+.++..|+.++.+|.-...    +.....+...|.|+||-..
T Consensus        56 sYvk~ve~aGa~~vpIp~~~~~----~~~~~~l~~idGiilpGG~   96 (315)
T 1l9x_A           56 SYVKYLESAGARVVPVRLDLTE----KDYEILFKSINGILFPGGS   96 (315)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCH----HHHHHHHHHSSEEEECCCC
T ss_pred             HHHHHHHHCCCEEEEECCCCCH----HHHHHHHHHCCEEEECCCC
T ss_conf             9999999879989998899998----9999986216989977898


No 134
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=23.94  E-value=29  Score=13.52  Aligned_cols=92  Identities=14%  Similarity=0.135  Sum_probs=53.9

Q ss_pred             HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHHHHHHHCCHHHCC-EEEEEC---C-
Q ss_conf             1468984698256768875046899988999862378389980789-------999999713544058-039971---8-
Q gi|255764510|r  131 FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVLYFFSLPLPAKIS-AAFLCL---S-  198 (232)
Q Consensus       131 l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~~~~~~~~~~~~~-~~~~~i---g-  198 (232)
                      +.+.+.+.|..|..+.+...     ....+.+.+...|+++|.||.       .++.|++.+.....+ ....++   | 
T Consensus       272 ia~~~~~~g~~v~~~~~~~~-----~~~~~~~~~~~~d~iilgspt~~g~~~~~~~~fl~~l~~~~~~~k~~~~fgs~g~  346 (398)
T 1ycg_A          272 LMDGLVAGGCEVKLFKLSVS-----DRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGW  346 (398)
T ss_dssp             HHHHHHHTTCEEEEEEGGGS-----CHHHHHHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEEEESS
T ss_pred             HHHHHHHCCCEEEEEECCCC-----CHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf             99887527967999987778-----9799999998679799972762886619999999998604657998999993087


Q ss_pred             -----HHHHHHHHHCCCCE-----EEECCCCCHHHHHHH
Q ss_conf             -----89999999769966-----998799998899999
Q gi|255764510|r  199 -----NNIASAIPASYKNV-----VTVACFPKETSLLKL  227 (232)
Q Consensus       199 -----~~tA~~~~~~g~~~-----~~va~~p~~~~ll~a  227 (232)
                           ....+.++..|+..     +.+-..|+++.+=++
T Consensus       347 ~~~a~~~~~~~l~~~g~~~v~~~~~~~~~~P~~~~l~~~  385 (398)
T 1ycg_A          347 GGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRC  385 (398)
T ss_dssp             SCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCEEEECCEEEEECCCCHHHHHHH
T ss_conf             867999999999977998961771899457998999999


No 135
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129}
Probab=23.94  E-value=30  Score=13.52  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=33.1

Q ss_pred             EEEEECCHHH---HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCC---------CCCCCEEEEECH
Q ss_conf             3898589688---6999999998798299942100000785200164---------475879998484
Q gi|255764510|r    2 YIVITRPIKK---ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAM---------QQSYGAIAITSS   57 (232)
Q Consensus         2 ~ilitRp~~~---a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~---------~~~~d~iiftS~   57 (232)
                      .|+|||=.++   +..|..+|+++|+.+..+=.|+-.|.+-+...++         -..-+.+|+|.|
T Consensus       114 sVVITqy~~q~~~a~~F~~~Le~~GIkvy~Hy~i~GYP~dv~~IVSdeGyGkN~yIeTtrpLVVVTAP  181 (507)
T 3bh1_A          114 HVVLTQLENDNRLALAFIERLQRLGIKVSRHRVIPGYPTDMDRIVSDEGFGLNEYAETTRDLVVVTAP  181 (507)
T ss_dssp             EEEEESCCTTCHHHHHHHHHHHTTTCEEEECCCCTTTTTCHHHHSSTTTGGGSCCCCCCSSEEEEECS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCEECCCCEEEEECC
T ss_conf             19998368996188999999997798179954658988885615673556778741236876999689


No 136
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=23.77  E-value=30  Score=13.50  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             EEEEEC------CHHHHHHHHHHHHHCCCCEEEECCEEEECCC------------CCCCCCCCCCCCEEEEECHH
Q ss_conf             389858------9688699999999879829994210000078------------52001644758799984846
Q gi|255764510|r    2 YIVITR------PIKKALRTQEKIQKMGYIPVMMPLSYFIHDR------------ESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         2 ~ilitR------p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~------------~~~~~~~~~~~d~iiftS~~   58 (232)
                      ||||.-      +..=+..+++-+++.|+++....+-......            ......++.+||.|||-||.
T Consensus         7 Kilivy~S~~GnT~~la~~i~~g~~~~g~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iilgsP~   81 (200)
T 2a5l_A            7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT   81 (200)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEEC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEECCC
T ss_conf             289999389808999999999988644966899843652157787724565335554788789758976995563


No 137
>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396}
Probab=23.58  E-value=30  Score=13.48  Aligned_cols=198  Identities=14%  Similarity=0.133  Sum_probs=94.8

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCCC---C----CCCCCCCCEEEEEC--HHHH-HHHHHHHCCCCCEECCCHHHHHH
Q ss_conf             9999999879829994210000078520---0----16447587999848--4679-99886200136300041589999
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRESV---F----LAMQQSYGAIAITS--SESL-STLPANFCRHTPIFAIGEASACL   83 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~----~~~~~~~d~iiftS--~~av-~~~~~~~~~~~~~~~vg~~t~~~   83 (232)
                      -+.+.++++|+++...-   .....+..   .    ...-..+|+|++..  ..+. ..+......+.|+..+...... 
T Consensus        21 g~~~~a~~~g~~~~~~~---~~~~~d~~~q~~~i~~~l~~~~~Dgiii~~~~~~~~~~~i~~~~~~~Ipvv~~d~~~~~-   96 (276)
T 3ksm_A           21 GAQKAADEAGVTLLHRS---TKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG-   96 (276)
T ss_dssp             HHHHHHHHHTCEEEECC---CSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-
T ss_pred             HHHHHHHHCCCEEEEEE---CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCC-
T ss_conf             99999998299999995---89986899999999999982799899992798577799999999779949997255467-


Q ss_pred             HHHHCCCCCCCCCC--CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH-------HHHHHHCCCEEEEEEEEEECCCC
Q ss_conf             76410122354445--4567899986422012777538972156756201-------46898469825676887504689
Q gi|255764510|r   84 ARQKGFTQIFHGKD--NSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHF-------EDYLIEHKIPLRVIDCYYSQDIA  154 (232)
Q Consensus        84 ~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l-------~~~L~~~g~~v~~~~vY~~~~~~  154 (232)
                         ...........  .+....+.+.... ...+.++++++.|.......       .+.+.+.+ .+..+..+  ....
T Consensus        97 ---~~~~~~v~~d~~~~g~~a~~~l~~~~-~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~~~~~~-~~~~~~~~--~~~~  169 (276)
T 3ksm_A           97 ---DAHQGLVATDNYAAGQLAARALLATL-DLSKERNIALLRLRAGNASTDQREQGFLDVLRKHD-KIRIIAAP--YAGD  169 (276)
T ss_dssp             ---SCSSEEEECCHHHHHHHHHHHHHHHS-CTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCT-TEEEEECC--BCCS
T ss_pred             ---CCCCEEEECCCHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEE--EEHH
T ss_conf             ---76521894261888999999999874-22898559981477777608899999999999779-86430355--4112


Q ss_pred             CCHH---HHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC--CEEEEECC--HHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             9988---999862---37838998078999999971354405--80399718--8999999976996699879999889
Q gi|255764510|r  155 YPET---TMKNLL---QNADAILFYARSSVLYFFSLPLPAKI--SAAFLCLS--NNIASAIPASYKNVVTVACFPKETS  223 (232)
Q Consensus       155 ~~~~---~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~ig--~~tA~~~~~~g~~~~~va~~p~~~~  223 (232)
                      ....   ....++   .++|+++..+...+....+.+...+.  ++.+++++  +...+.+. .|.-...+...|...+
T Consensus       170 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a~~~~g~~~~i~vvg~d~~~~~~~~i~-~g~~~~ti~q~~~~~g  247 (276)
T 3ksm_A          170 DRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMY-AGEISNLVVQNPEYMG  247 (276)
T ss_dssp             SHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHHH-TTSSSEEEECCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH-CCCCEEEEECCHHHHH
T ss_conf             34789999887651289850442378299999999999769999818998789799999987-5995399958999999


No 138
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=23.51  E-value=30  Score=13.47  Aligned_cols=14  Identities=0%  Similarity=-0.209  Sum_probs=7.8

Q ss_pred             HHCCCCEEEECCEE
Q ss_conf             98798299942100
Q gi|255764510|r   20 QKMGYIPVMMPLSY   33 (232)
Q Consensus        20 ~~~G~~~i~~Pli~   33 (232)
                      ++.|.++..+-+.+
T Consensus        31 ~~~~~~~~~i~l~~   44 (197)
T 2vzf_A           31 ARSDSQGRHIHVID   44 (197)
T ss_dssp             HHSSEEEEEEEGGG
T ss_pred             HHCCCEEEEEEECC
T ss_conf             43598699997012


No 139
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=23.31  E-value=30  Score=13.45  Aligned_cols=129  Identities=7%  Similarity=-0.025  Sum_probs=58.0

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCC----CCCCCCCCCCCEEE-EECHHHHHHH-HHHHCCCCCEE
Q ss_conf             938985896886999999998798299942100000785----20016447587999-8484679998-86200136300
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRE----SVFLAMQQSYGAIA-ITSSESLSTL-PANFCRHTPIF   74 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~----~~~~~~~~~~d~ii-ftS~~av~~~-~~~~~~~~~~~   74 (232)
                      |||-|.==-.-+...++.|.+.|++....=  +..+...    +.+.....+.|.++ ++++.++.-. ...+...++++
T Consensus         1 MkVgIIG~G~iG~~v~~~l~~~~~el~~v~--d~~~~~~~~~~~~de~l~~~~DvVie~a~~~a~~e~a~~~L~~G~~vv   78 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAIL--DVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLI   78 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE--CSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEE--ECCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf             979999588899999999971998899999--678502244489999943888789990697404799999997399799


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf             0415899997641012235444545678999864220127775389721567562014689846982567688750468
Q gi|255764510|r   75 AIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDI  153 (232)
Q Consensus        75 ~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~  153 (232)
                      +.-.+.                .......+.+.....  ..+.++.++.|..+.-+....++.   .++ -+.|.+...
T Consensus        79 v~S~ga----------------lad~~~~~~L~~~A~--~~g~~l~i~sGaigGld~l~aa~~---~l~-~v~~~~~k~  135 (236)
T 2dc1_A           79 VLSTGA----------------FADRDFLSRVREVCR--KTGRRVYIASGAIGGLDAIFSASE---LIE-EIVLTTRKN  135 (236)
T ss_dssp             ESCGGG----------------GGSHHHHHHHHHHHH--HHCCCEEECCTTCSCHHHHHHTGG---GEE-EEEEEEEEE
T ss_pred             EEECHH----------------HCCCHHHHHHHHHHH--HCCCCEEECCCHHCCHHHHHHHHH---HHH-CCEEECCCC
T ss_conf             962216----------------317349999999998--658837844200114489999975---433-019961437


No 140
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=23.25  E-value=30  Score=13.44  Aligned_cols=29  Identities=7%  Similarity=-0.010  Sum_probs=17.7

Q ss_pred             CEEEEE----CCHHHHHHHHHHHHHC---CCCEEEE
Q ss_conf             938985----8968869999999987---9829994
Q gi|255764510|r    1 MYIVIT----RPIKKALRTQEKIQKM---GYIPVMM   29 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~~~~L~~~---G~~~i~~   29 (232)
                      |||++.    |+...+..+++.+.+.   |+++-.+
T Consensus         7 MKIl~I~GS~R~~S~t~~l~~~~~~~~~~g~ev~~i   42 (193)
T 1rtt_A            7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELA   42 (193)
T ss_dssp             CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             779999898998888999999999864699989998


No 141
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=22.39  E-value=32  Score=13.34  Aligned_cols=46  Identities=11%  Similarity=0.068  Sum_probs=31.2

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             938985896886999999998798299942100000785200164475879998484
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      |||=|.-=...-...++.|++.|+++....           ...++.++|.||+.-.
T Consensus        24 mkigvl~~~Gn~~s~~~AL~~lG~~~~iv~-----------~~~~l~~~D~lILPGG   69 (219)
T 1q7r_A           24 MKIGVLGLQGAVREHVRAIEACGAEAVIVK-----------KSEQLEGLDGLVLPGG   69 (219)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHTTCEEEEEC-----------SGGGGTTCSEEEECCC
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECCC
T ss_conf             779999658839999999998799699989-----------9899824999999999


No 142
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=22.23  E-value=32  Score=13.32  Aligned_cols=43  Identities=14%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             CCCEEEEECHHHHHHHHHHHC----CCCCEECCCHHHHHHHHHHCCC
Q ss_conf             587999848467999886200----1363000415899997641012
Q gi|255764510|r   48 SYGAIAITSSESLSTLPANFC----RHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        48 ~~d~iiftS~~av~~~~~~~~----~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      +...|=+-|...+.+|...+.    ...........|+..+.+.|..
T Consensus        20 ~gm~IGLGtGsTv~~~i~~L~~~~~~~~~~v~tS~~t~~~~~~~Gi~   66 (219)
T 1m0s_A           20 ADRIVGVGSGSTVNCFIEALGTIKDKIQGAVAASKESEELLRKQGIE   66 (219)
T ss_dssp             TTSEEEECCSHHHHHHHHHHHTTGGGSCEEEESSHHHHHHHHHTTCC
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCC
T ss_conf             99999947569999999999875426615884868999999987997


No 143
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=21.85  E-value=32  Score=13.27  Aligned_cols=59  Identities=10%  Similarity=-0.021  Sum_probs=30.8

Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEE
Q ss_conf             41012235444545678999864220---127775389721567562----014689846982567
Q gi|255764510|r   86 QKGFTQIFHGKDNSINLAKIIVEQKV---LFTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRV  144 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~  144 (232)
                      ++|.......+..+...++.+.+...   .....++|+++||.+-+.    .+...|...|+.|..
T Consensus        46 ~~Gis~~~LME~AG~~va~~i~~~~~~~~~~~~~~~IlvlcG~GNNGGDGlv~AR~L~~~G~~V~v  111 (265)
T 2o8n_A           46 EYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTI  111 (265)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHSCGGGSSSSSCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             729899999999999999999996552223568984999988998769999999999975990699


No 144
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=21.75  E-value=33  Score=13.26  Aligned_cols=57  Identities=11%  Similarity=0.055  Sum_probs=29.0

Q ss_pred             CEEEEE----CCHHHHHHHHHHHHHCCCC--EEEECCEEEECCCC-------------CC--CCCCCCCCCEEEEECHH
Q ss_conf             938985----8968869999999987982--99942100000785-------------20--01644758799984846
Q gi|255764510|r    1 MYIVIT----RPIKKALRTQEKIQKMGYI--PVMMPLSYFIHDRE-------------SV--FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~~~~L~~~G~~--~i~~Pli~i~~~~~-------------~~--~~~~~~~~d~iiftS~~   58 (232)
                      ||||+.    |+......+++.+.+ |++  .+.+.-.++.+...             +.  ....+..+|.|||.||.
T Consensus         4 MKil~i~gSpr~~g~t~~l~~~~~~-g~e~~~i~l~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~i~~AD~iV~~sP~   81 (184)
T 1rli_A            4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPI   81 (184)
T ss_dssp             -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEEC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEEEEE
T ss_conf             8899998889978789999999974-78878998020575400024443037776407899999999968979998752


No 145
>3a11_A Translation initiation factor EIF-2B, delta subunit; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis}
Probab=21.43  E-value=33  Score=13.22  Aligned_cols=103  Identities=9%  Similarity=-0.027  Sum_probs=41.0

Q ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHHHCC
Q ss_conf             2777538972156756201468984698256768875046899988999862-378389980789999999713544058
Q gi|255764510|r  113 FTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPAKIS  191 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~~~~  191 (232)
                      ...+..|+-.|..+.--.+.....+.|.... +.+-++.|.-.-.....++. .++++.++.-. ++..++..+..--..
T Consensus       139 I~~g~~ILT~~~S~tv~~~l~~a~~~gk~~~-V~v~EsrP~~qGr~~a~eL~~~gI~~t~I~Ds-a~~~~m~~vd~VlvG  216 (338)
T 3a11_A          139 IEDGDVIMTHCHSKAAISVMKTAWEQGKDIK-VIVTETRPKWQGKITAKELASYGIPVIYVVDS-AARHYMKMTDKVVMG  216 (338)
T ss_dssp             CCTTCEEEECSCCHHHHHHHHHHHHTTCCCE-EEEECCTTTTHHHHHHHHHHHTTCCEEEECGG-GTTTTGGGCSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCHHHHHHHHCCCCEEEECHH-HHHHHHHCCCEEEEE
T ss_conf             5899879983696899999999998799758-99974797413507799998379985895267-899997308849984


Q ss_pred             E--------EEEECCH-HHHHHHHHCCCCEEEECC
Q ss_conf             0--------3997188-999999976996699879
Q gi|255764510|r  192 A--------AFLCLSN-NIASAIPASYKNVVTVAC  217 (232)
Q Consensus       192 ~--------~~~~ig~-~tA~~~~~~g~~~~~va~  217 (232)
                      .        .+-=+|. .+|-.++..+.....+|+
T Consensus       217 Ad~v~~nG~v~nkiGT~~iA~~Ak~~~vPv~V~a~  251 (338)
T 3a11_A          217 ADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE  251 (338)
T ss_dssp             CSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECC
T ss_pred             EEEEECCCCEEECCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             23786179874433078999987755986799704


No 146
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A*
Probab=21.37  E-value=33  Score=13.21  Aligned_cols=109  Identities=12%  Similarity=0.047  Sum_probs=62.8

Q ss_pred             CCCCEEEEE--CCCCCCC----CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECH-------HHHHH
Q ss_conf             777538972--1567562----0146898469825676887504689998899986237838998078-------99999
Q gi|255764510|r  114 TPQKPLIYL--GGKPRNF----HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYAR-------SSVLY  180 (232)
Q Consensus       114 ~~~~~vl~~--~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~-------~~v~~  180 (232)
                      ....+|+++  +..+...    .+.+.+...|..++...+   .  ..........+...|+++|.||       ..+..
T Consensus       254 ~~~~kv~Ivy~S~~GnT~~~A~~i~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~~~d~ii~Gspt~~~~~~~~~~~  328 (404)
T 2ohh_A          254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCL---H--EDDRSEIVKDILESGAIALGAPTIYDEPYPSVGD  328 (404)
T ss_dssp             CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEET---T--TSCHHHHHHHHHTCSEEEEECCEETTEECTHHHH
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE---C--CCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
T ss_conf             5576262898558657999999999988757981899992---5--8897888999985795599636517846889999


Q ss_pred             HHHHCCHHH---C-CEEEEECC---------HHHHHHHHHCCCCE---EEECCCCCHHHHHHH
Q ss_conf             997135440---5-80399718---------89999999769966---998799998899999
Q gi|255764510|r  181 FFSLPLPAK---I-SAAFLCLS---------NNIASAIPASYKNV---VTVACFPKETSLLKL  227 (232)
Q Consensus       181 ~~~~~~~~~---~-~~~~~~ig---------~~tA~~~~~~g~~~---~~va~~p~~~~ll~a  227 (232)
                      |++.+....   . ....+++|         ....+.+...|++.   ..+.-.|+++.+=++
T Consensus       329 fl~~l~~~~~~~~~gK~~~~Fgs~g~~g~a~~~~~~~l~~~G~~vv~~~~~~~~P~~e~l~~~  391 (404)
T 2ohh_A          329 LLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDAC  391 (404)
T ss_dssp             HHHHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEEEEEEEEESSCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCEEEEECCCHHHHHHH
T ss_conf             999986576456579869999904887699999999999779989456789507998999999


No 147
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=21.36  E-value=33  Score=13.21  Aligned_cols=198  Identities=10%  Similarity=-0.028  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCEEEEC-------------CCCC-CCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCC
Q ss_conf             6886999999998798299942100000-------------7852-00164475879998484679998862001--363
Q gi|255764510|r    9 IKKALRTQEKIQKMGYIPVMMPLSYFIH-------------DRES-VFLAMQQSYGAIAITSSESLSTLPANFCR--HTP   72 (232)
Q Consensus         9 ~~~a~~~~~~L~~~G~~~i~~Pli~i~~-------------~~~~-~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~   72 (232)
                      ..+...+.++|++.|++++.+|-..-..             .... .++........-+..++.+-..+...+.+  +.|
T Consensus       181 ~~d~~el~~lL~~~Gi~~~~~~~~s~~~~~~~~~~~~~~~~gg~~le~i~~~~~A~lniv~~~~~~~~~A~~L~~~~GiP  260 (458)
T 1mio_B          181 PADMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSYASDLGAKTLEKKCKVP  260 (458)
T ss_dssp             HHHHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESHHHHHHHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCC
T ss_conf             01499999999982995675256200234665675104327999799999764188999988556578999999986998


Q ss_pred             EEC----CC-HHHHHHHHHHCCCCCCCCCCC-HHHHHHHH--HHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEE
Q ss_conf             000----41-589999764101223544454-56789998--64220127775389721567562014689846982567
Q gi|255764510|r   73 IFA----IG-EASACLARQKGFTQIFHGKDN-SINLAKII--VEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRV  144 (232)
Q Consensus        73 ~~~----vg-~~t~~~~~~~~~~~~~~~~~~-~~~~~~ll--~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~  144 (232)
                      +..    .| ..|.+.+++............ .+....+.  .........++++.+..+....-.+.+.|...|..+..
T Consensus       261 yi~~~~p~G~~~t~~~l~~l~~~~G~~~~~~i~~er~~~~~~~~~~~~~l~gkrv~I~~~~~~~~~l~~~L~elG~~~~~  340 (458)
T 1mio_B          261 FKTLRTPIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIELGAIPKY  340 (458)
T ss_dssp             EEEECCCBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTTTCEEEE
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
T ss_conf             78558876878999999999999689817878876999999999999972898899989828899999999983990038


Q ss_pred             EEEEEECCCCCCHHHHHHHHC--CC-CEEEEE--CHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEE
Q ss_conf             688750468999889998623--78-389980--7899999997135440580399718899999997699669
Q gi|255764510|r  145 IDCYYSQDIAYPETTMKNLLQ--NA-DAILFY--ARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVV  213 (232)
Q Consensus       145 ~~vY~~~~~~~~~~~~~~~~~--~~-d~i~f~--S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~  213 (232)
                      +.+..  ..+...+.....+.  .. ...++.  +...+..+.+...+   +  ++.-+......+++.|..-+
T Consensus       341 ~~~~~--~~~~~~~~~~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~p---D--liig~s~~~~~a~~~~ip~i  407 (458)
T 1mio_B          341 VVTGT--PGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGV---D--LLISNTYGKFIAREENIPFV  407 (458)
T ss_dssp             EEESS--CCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCC---S--EEEESGGGHHHHHHHTCCEE
T ss_pred             EEECC--CCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCC---C--EEEECCHHHHHHHHCCCCEE
T ss_conf             98378--98778999999998558878679979899999999975399---9--99979367899997599879


No 148
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=21.29  E-value=33  Score=13.20  Aligned_cols=28  Identities=7%  Similarity=0.038  Sum_probs=17.2

Q ss_pred             EEEECC-HHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             898589-6886999999998798299942
Q gi|255764510|r    3 IVITRP-IKKALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         3 ilitRp-~~~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||=- ..=+..++..|.+.|++++..-
T Consensus        10 vlITGas~GIG~aiA~~la~~Ga~V~i~~   38 (252)
T 3h7a_A           10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGR   38 (252)
T ss_dssp             EEEECCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99975855899999999998799999998


No 149
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=21.23  E-value=33  Score=13.19  Aligned_cols=27  Identities=4%  Similarity=-0.224  Sum_probs=16.3

Q ss_pred             EEEECCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             898589688699999999879829994
Q gi|255764510|r    3 IVITRPIKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         3 ilitRp~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      |+|.=---=+.-++..|.+.|+++...
T Consensus        11 V~IIGlGlIG~Sla~aL~~~g~~V~g~   37 (341)
T 3ktd_A           11 VCILGLGLIGGSLLRDLHAANHSVFGY   37 (341)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEE
T ss_conf             899974989999999998787989999


No 150
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A*
Probab=20.82  E-value=34  Score=13.14  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             CEEEEECC----H-----HHHHHHHHHHHHCCCCEEEE
Q ss_conf             93898589----6-----88699999999879829994
Q gi|255764510|r    1 MYIVITRP----I-----KKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp----~-----~~a~~~~~~L~~~G~~~i~~   29 (232)
                      |||++.-|    .     .....+++.|.+.|+++..+
T Consensus        21 MkI~iv~~~~~p~~GG~~~~i~~La~~L~~~GheV~v~   58 (406)
T 2gek_A           21 MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL   58 (406)
T ss_dssp             CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             88999899878999879999999999999779989999


No 151
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=20.48  E-value=35  Score=13.10  Aligned_cols=29  Identities=10%  Similarity=-0.024  Sum_probs=23.6

Q ss_pred             CEEEEECC-HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             93898589-688699999999879829994
Q gi|255764510|r    1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=. ..-+..++..|.+.|+++..+
T Consensus         5 ~KIlItGatG~iG~~l~~~Ll~~g~~V~~l   34 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAV   34 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             999998899889999999999784989999


No 152
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=20.33  E-value=35  Score=13.08  Aligned_cols=29  Identities=10%  Similarity=0.030  Sum_probs=24.6

Q ss_pred             CEEEEE-CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             938985-89688699999999879829994
Q gi|255764510|r    1 MYIVIT-RPIKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilit-Rp~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      |||.|+ =...-+..++..|.+.|++++..
T Consensus         1 MkI~iigGaG~iG~alA~~la~~G~~V~l~   30 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVG   30 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             979999484599999999999889989999


No 153
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=20.31  E-value=35  Score=13.07  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHCCCCEE-EECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH
Q ss_conf             6886999999998798299-94210000078520016447587999848467999886
Q gi|255764510|r    9 IKKALRTQEKIQKMGYIPV-MMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPA   65 (232)
Q Consensus         9 ~~~a~~~~~~L~~~G~~~i-~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~   65 (232)
                      ......+...++++|++.+ .+++-+-+.-+++.....+.+.|+|.|+-.+-.+....
T Consensus        70 ~~~~~~y~~~f~~lG~~~v~~l~i~~r~~A~~~~~~~~l~~Ad~I~~~GGdq~~l~~~  127 (291)
T 3en0_A           70 LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGL  127 (291)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHH
T ss_conf             8999999999998599658999446836648889999985199999948999999999


No 154
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=20.13  E-value=35  Score=13.05  Aligned_cols=29  Identities=10%  Similarity=0.029  Sum_probs=23.6

Q ss_pred             CEEEEECC-HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             93898589-688699999999879829994
Q gi|255764510|r    1 MYIVITRP-IKKALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus         1 M~ilitRp-~~~a~~~~~~L~~~G~~~i~~   29 (232)
                      ||||||=- .--+..++..|.+.|+++..+
T Consensus        14 mkilVtGatG~vG~~l~~~L~~~g~~V~~l   43 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLI   43 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             949998999889999999999786989999


No 155
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-2; 2.00A {Corynebacterium glutamicum}
Probab=20.07  E-value=35  Score=13.04  Aligned_cols=56  Identities=9%  Similarity=-0.041  Sum_probs=33.6

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEE-----CCCCCCCCCCCCCCCEEEEEC
Q ss_conf             9389858968-8699999999879829994210000-----078520016447587999848
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFI-----HDRESVFLAMQQSYGAIAITS   56 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~-----~~~~~~~~~~~~~~d~iiftS   56 (232)
                      ||||||=... -+..++..|.+.|++++.+---...     ....+.....+.+.|.||-..
T Consensus       148 mkILITGatGfIG~~Lv~~L~~~Gh~V~~l~R~~~~~~~~~~d~~~~~~~~l~~~D~VIHlA  209 (516)
T 3oh8_A          148 LTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLA  209 (516)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCHHHHHHHHCCCCEEEECC
T ss_conf             98999898758999999999978798999978864322222760156888745999999998


No 156
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=20.07  E-value=35  Score=13.04  Aligned_cols=179  Identities=12%  Similarity=0.092  Sum_probs=86.7

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCCCC-CCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             9999999987982999421000007852-001644758799984846-79998862001363000415899997641012
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDRES-VFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~-~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      ..+.+.+++.|+..+.++.-.-...... +........|++++.+.. .-..+........|+...+.....    ....
T Consensus        28 ~gi~~~a~~~Gy~l~l~~~~~~~~~e~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~~~----~~~~  103 (291)
T 3egc_A           28 SGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTELPKTFPIVAVNRELRI----PGCG  103 (291)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSCTTSCEEEESSCCCC----TTCE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCC----CCCC
T ss_conf             999999998699899997899979999999999975987899942445569999985328968972022368----9998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHH
Q ss_conf             2354445456789998642201277753897215675620-------14689846982567688750468-999889998
Q gi|255764510|r   91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKN  162 (232)
Q Consensus        91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~  162 (232)
                      ..   ..+.......+...... .+..++.++.|......       +.+.+.+.|..+.....+..... ..-.+....
T Consensus       104 ~v---~~d~~~a~~~~~~~L~~-~G~~~i~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  179 (291)
T 3egc_A          104 AV---LSENVRGARTAVEYLIA-RGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIK  179 (291)
T ss_dssp             EE---EECHHHHHHHHHHHHHH-TTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHH
T ss_pred             EE---EECHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHH
T ss_conf             89---85579999999999997-699569883277433058899999999999849984321123677645579999999


Q ss_pred             HH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCH
Q ss_conf             62---37838998078999999971354405----803997188
Q gi|255764510|r  163 LL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       163 ~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~  199 (232)
                      ++   ..+++|+.++-..+..+.+.+...+.    ++.++++..
T Consensus       180 ~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vig~D~  223 (291)
T 3egc_A          180 VLTGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDN  223 (291)
T ss_dssp             HHTC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESC
T ss_pred             HHHCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf             98559998510115789998799999983898899868999678


Done!