Query gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 232 No_of_seqs 102 out of 2643 Neff 9.6 Searched_HMMs 13730 Date Sat Jun 4 22:47:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764510.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1jr2a_ c.113.1.1 (A:) Uroporp 100.0 5.1E-42 0 268.7 21.3 227 1-230 1-257 (260) 2 d1wd7a_ c.113.1.1 (A:) Probabl 100.0 6.6E-40 4.8E-44 256.0 17.5 223 1-230 2-247 (254) 3 d1wd7a_ c.113.1.1 (A:) Probabl 98.9 2.5E-09 1.8E-13 72.5 8.5 110 118-229 3-121 (254) 4 d1jr2a_ c.113.1.1 (A:) Uroporp 98.9 1.6E-08 1.2E-12 67.7 10.6 100 128-230 16-131 (260) 5 d1sc6a2 c.23.12.1 (A:7-107,A:2 92.3 0.13 9.8E-06 26.1 5.4 100 1-105 5-109 (132) 6 d1o1ya_ c.23.16.1 (A:) Hypothe 90.3 0.18 1.3E-05 25.3 4.5 51 1-56 4-56 (230) 7 d1ydga_ c.23.5.8 (A:) Trp repr 82.5 0.55 4E-05 22.5 3.4 66 1-66 3-99 (201) 8 d1gdha2 c.23.12.1 (A:2-100,A:2 81.7 1.1 8.2E-05 20.6 4.7 98 2-104 3-106 (129) 9 d1jyea_ c.93.1.1 (A:) Lac-repr 80.4 1.5 0.00011 19.9 9.3 174 14-198 21-213 (271) 10 d7reqa2 c.23.6.1 (A:561-728) M 79.1 1.6 0.00012 19.7 7.8 112 112-229 33-160 (168) 11 d2qwxa1 c.23.5.3 (A:1-230) Qui 76.3 1.6 0.00012 19.7 4.2 31 1-31 3-41 (230) 12 d1vmea1 c.23.5.1 (A:251-398) R 75.0 1.3 9.2E-05 20.3 3.3 48 11-58 20-67 (148) 13 d1m1na_ c.92.2.3 (A:) Nitrogen 66.9 3.2 0.00023 17.9 9.8 192 10-215 230-438 (477) 14 d2a9va1 c.23.16.1 (A:1-196) GM 60.4 3.5 0.00026 17.6 3.2 49 1-57 2-51 (196) 15 d1d4aa_ c.23.5.3 (A:) NAD(P)H: 58.7 4.6 0.00033 17.0 4.8 19 13-31 23-41 (273) 16 d2gk3a1 c.23.16.9 (A:8-253) Pu 57.4 4.8 0.00035 16.8 4.0 45 11-56 31-75 (246) 17 d1id1a_ c.2.1.9 (A:) Rck domai 55.4 5.2 0.00038 16.6 6.9 52 164-215 69-124 (153) 18 d1lssa_ c.2.1.9 (A:) Ktn Mja21 54.1 5.4 0.0004 16.5 4.5 29 1-29 1-29 (132) 19 d1dxya2 c.23.12.1 (A:1-100,A:3 53.3 5.6 0.00041 16.4 8.8 100 1-105 1-108 (131) 20 d1vb5a_ c.124.1.5 (A:) Putativ 52.4 5.8 0.00042 16.3 4.0 103 114-218 107-219 (274) 21 d1q7ra_ c.23.16.1 (A:) Hypothe 51.8 5.9 0.00043 16.3 5.9 47 1-58 7-53 (202) 22 d1ccwa_ c.23.6.1 (A:) Glutamat 49.9 6.3 0.00046 16.1 7.4 95 128-229 20-131 (137) 23 d1ycga1 c.23.5.1 (A:251-399) N 49.6 5.3 0.00039 16.5 2.6 44 12-58 20-63 (149) 24 d1vl0a_ c.2.1.2 (A:) DTDP-4-de 49.0 5.2 0.00038 16.6 2.5 31 1-31 2-33 (281) 25 d1udca_ c.2.1.2 (A:) Uridine d 47.8 6.8 0.0005 15.9 4.2 29 1-29 1-30 (338) 26 d1e5da1 c.23.5.1 (A:251-402) R 47.1 6.1 0.00045 16.2 2.6 44 12-58 20-63 (152) 27 d1qp8a1 c.2.1.4 (A:83-263) Put 45.8 7.3 0.00053 15.7 3.0 64 114-177 40-103 (181) 28 d2h1qa1 c.67.3.1 (A:1-251) Hyp 43.8 7.9 0.00058 15.5 4.3 110 113-229 119-233 (251) 29 d2a5la1 c.23.5.8 (A:3-198) Trp 42.9 8.2 0.00059 15.4 3.5 48 11-58 18-77 (196) 30 d5nula_ c.23.5.1 (A:) Flavodox 37.1 10 0.00073 14.9 3.0 50 1-57 1-54 (138) 31 d1sqsa_ c.23.5.5 (A:) Hypothet 36.4 10 0.00075 14.8 4.0 13 46-58 77-89 (232) 32 d1guda_ c.93.1.1 (A:) D-allose 34.5 11 0.00081 14.6 11.1 207 14-224 22-254 (288) 33 d1uc8a1 c.30.1.6 (A:1-88) Lysi 33.0 12 0.00086 14.5 4.8 52 3-55 4-55 (88) 34 d1rlia_ c.23.5.6 (A:) Hypothet 33.0 12 0.00086 14.5 4.4 13 45-57 64-76 (179) 35 d1rtta_ c.23.5.4 (A:) Hypothet 32.5 12 0.00087 14.4 2.4 28 1-28 1-35 (174) 36 d2fz5a1 c.23.5.1 (A:1-137) Fla 31.9 12 0.00089 14.4 3.3 41 10-57 15-55 (137) 37 d1kewa_ c.2.1.2 (A:) dTDP-gluc 29.3 14 0.00099 14.1 3.9 29 1-29 1-30 (361) 38 d1v7ra_ c.51.4.1 (A:) XTP pyro 28.6 14 0.001 14.0 4.3 30 1-30 1-31 (186) 39 d1usga_ c.93.1.1 (A:) Leucine- 28.4 14 0.001 14.0 9.0 94 101-195 123-223 (346) 40 d1wdia_ e.53.1.1 (A:) Queuosin 27.9 14 0.001 14.0 7.2 89 114-209 174-267 (344) 41 d2dria_ c.93.1.1 (A:) D-ribose 27.9 14 0.001 14.0 10.1 200 14-222 22-240 (271) 42 d1p90a_ c.55.5.2 (A:) NafY cor 27.7 14 0.0011 13.9 3.5 35 195-229 74-108 (123) 43 d1jaya_ c.2.1.6 (A:) Coenzyme 26.9 15 0.0011 13.9 4.2 29 1-29 1-30 (212) 44 d1wu2a3 c.57.1.2 (A:181-324) M 25.6 13 0.00094 14.3 1.4 48 13-60 34-82 (144) 45 d1ulua_ c.2.1.2 (A:) Enoyl-ACP 23.9 17 0.0012 13.5 5.9 28 2-29 10-40 (256) 46 d1r6da_ c.2.1.2 (A:) dTDP-gluc 23.5 17 0.0013 13.5 2.6 27 1-27 1-28 (322) 47 d1i24a_ c.2.1.2 (A:) Sulfolipi 23.4 17 0.0013 13.5 4.2 29 1-29 2-31 (393) 48 d2c5aa1 c.2.1.2 (A:13-375) GDP 23.1 18 0.0013 13.4 4.8 29 1-29 16-45 (363) 49 d1ks9a2 c.2.1.6 (A:1-167) Keto 22.9 18 0.0013 13.4 4.5 30 1-30 1-30 (167) 50 d1mioa_ c.92.2.3 (A:) Nitrogen 22.9 18 0.0013 13.4 9.0 132 10-147 219-366 (525) 51 d1t9ka_ c.124.1.5 (A:) Probabl 22.7 18 0.0013 13.4 2.3 101 114-217 143-265 (340) 52 d1qp8a2 c.23.12.1 (A:1-82,A:26 22.4 18 0.0013 13.3 1.7 20 1-22 1-20 (121) 53 d1iuka_ c.2.1.8 (A:) Hypotheti 20.9 20 0.0014 13.2 2.8 97 117-213 14-121 (136) No 1 >d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=5.1e-42 Score=268.70 Aligned_cols=227 Identities=16% Similarity=0.199 Sum_probs=193.5 Q ss_pred CE-EEEECCHHHH---HHHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHH------ Q ss_conf 93-8985896886---99999999879829994210000078520---01644758799984846799988620------ Q gi|255764510|r 1 MY-IVITRPIKKA---LRTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANF------ 67 (232) Q Consensus 1 M~-ilitRp~~~a---~~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~------ 67 (232) || ||+|||.+++ +.+.+.|+++|++++.+|+++++|.+.+. ...++.+|||+||||+|||++++..+ T Consensus 1 mk~il~trp~~~~~~~d~~~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~~~~~d~iifTS~~aV~~~~~~l~~~~~~ 80 (260) T d1jr2a_ 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKT 80 (260) T ss_dssp CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCH T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCEEEEECCHHHHHHHHHCHHHCCEEEEECCHHHHHHHHHHHHHCCC T ss_conf 93899569997766401999999968992899898887608838899987283116689991734899999987762764 Q ss_pred ----------CCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH Q ss_conf ----------0136300041589999764101223544454567899986422012777538972156756201468984 Q gi|255764510|r 68 ----------CRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIE 137 (232) Q Consensus 68 ----------~~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~ 137 (232) .++.+++|+|.+|++++++.|+.....+.+.++.+.+.+.. ....++++++++|...+++|.+.|++ T Consensus 81 ~~~~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~~~~~~s~~l~~~~~~---~~~~~~~il~~~g~~~~~~L~~~L~~ 157 (260) T d1jr2a_ 81 EVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYICS---RESSALPLLFPCGNLKREILPKALKD 157 (260) T ss_dssp HHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCSCCSCSSHHHHHHHHHT---SCCCSSCEEEEESCGGGCCHHHHHHT T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH---HCCCCCEEEEEECCCCCHHHHHHHHH T ss_conf 122244443211584999857999999985997520565307888998764---02567549996255530678888885 Q ss_pred CCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHH----CCEEEEECCHHHHHHHHHCCC Q ss_conf 698256768875046899988999862---3783899807899999997135440----580399718899999997699 Q gi|255764510|r 138 HKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLPLPAK----ISAAFLCLSNNIASAIPASYK 210 (232) Q Consensus 138 ~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~----~~~~~~~ig~~tA~~~~~~g~ 210 (232) .|+.|+++++|++++...........+ ..+|+|+|||+++++.|++++.... .+..++|||++||+++++.|+ T Consensus 158 ~g~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~i~f~S~s~v~~~~~~~~~~~~~~~~~~~i~~IG~~ta~~l~~~G~ 237 (260) T d1jr2a_ 158 KGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGL 237 (260) T ss_dssp TTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESSHHHHHHHHHTTC T ss_pred CCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCC T ss_conf 49850699864454464536889999875247617862698999999999987313032583899988999999997699 Q ss_pred CEEEECCCCCHHHHHHHHHH Q ss_conf 66998799998899999861 Q gi|255764510|r 211 NVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 211 ~~~~va~~p~~~~ll~al~~ 230 (232) +++++|+.|+.++|+++|.+ T Consensus 238 ~~~~~a~~p~~e~lv~aI~~ 257 (260) T d1jr2a_ 238 PVSCTAESPTPQALATGIRK 257 (260) T ss_dssp CCSEECSSSSHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHH T ss_conf 72699698998999999999 No 2 >d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=6.6e-40 Score=256.04 Aligned_cols=223 Identities=15% Similarity=0.077 Sum_probs=185.4 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCC----CCCCCCCEEEEECHHHHHHHHHHHC-------- Q ss_conf 9389858968869999999987982999421000007852001----6447587999848467999886200-------- Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFL----AMQQSYGAIAITSSESLSTLPANFC-------- 68 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~----~~~~~~d~iiftS~~av~~~~~~~~-------- 68 (232) |||.|+.++ ++++++..|+++|++++++|++++++.+.+... ...++|||+||||+|||++|+..+. T Consensus 2 ~r~~~~~~r-~~e~~~~lle~~G~~p~~~P~i~i~~~p~~~~~~~~~~~~~~~d~vvfTS~ngV~~~~~~l~~~~~~~~~ 80 (254) T d1wd7a_ 2 VRVAYAGLR-RKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEG 80 (254) T ss_dssp CEEEECCST-THHHHHHHHHHTTCEEEECCCBCSSCEECTTHHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHH T ss_pred CEEEECHHH-HHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHH T ss_conf 526523044-4899999999779928983321036088045689998622599999998989999999999874952767 Q ss_pred --CCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEE Q ss_conf --136300041589999764101223544454567899986422012777538972156756201468984698256768 Q gi|255764510|r 69 --RHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVID 146 (232) Q Consensus 69 --~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~ 146 (232) .+.+++|+|++|++++.+.|+.....+.+.++.+.+.+ ....+.+++++++.++++|.+.|++.|+.|+++. T Consensus 81 ~l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~~~s~~l~~~~------~~~~~~~l~~~~~~~~~~L~~~L~~~G~~v~~v~ 154 (254) T d1wd7a_ 81 PLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLL------PQGRGVAALQLYGKPLPLLENALAERGYRVLPLM 154 (254) T ss_dssp HHHTSEEEESSHHHHHHHHHTTCCCSEECSSSGGGGGGGC------CCCCEEEEEECSSSCCHHHHHHHHHTTEEEEEEC T ss_pred HHCCCEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHH------HCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEE T ss_conf 8418859999789999999739998537720079999987------3479789995156783799999973667646999 Q ss_pred EEEECCCCCCHHHHHHHH--CCCCEEEEECHHHHHHHHHHCCHHH-------CCEEEEECCHHHHHHHHHCCCCEEEECC Q ss_conf 875046899988999862--3783899807899999997135440-------5803997188999999976996699879 Q gi|255764510|r 147 CYYSQDIAYPETTMKNLL--QNADAILFYARSSVLYFFSLPLPAK-------ISAAFLCLSNNIASAIPASYKNVVTVAC 217 (232) Q Consensus 147 vY~~~~~~~~~~~~~~~~--~~~d~i~f~S~~~v~~~~~~~~~~~-------~~~~~~~ig~~tA~~~~~~g~~~~~va~ 217 (232) +|++++.+.....+...+ +++|+|+|||++++++|++++...+ .++.++||||.|++++++.|++++++++ T Consensus 155 ~Y~t~~~~~~~~~l~~~l~~~~~d~V~ftS~s~v~~f~~~~~~~~~~~~~~~~~~~v~aIGp~Ta~al~~~G~~~~v~~~ 234 (254) T d1wd7a_ 155 PYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDE 234 (254) T ss_dssp SEECCBCHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHHHHHTTSEEEEESHHHHHHHHHTTCCCSEEET T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEEC T ss_conf 86640333673889999842895299847889999999987553033777426978999899999999976998279809 Q ss_pred CCCHHHHHHHHHH Q ss_conf 9998899999861 Q gi|255764510|r 218 FPKETSLLKLLPL 230 (232) Q Consensus 218 ~p~~~~ll~al~~ 230 (232) .|+.++|+++|++ T Consensus 235 ~~t~~~lv~al~~ 247 (254) T d1wd7a_ 235 TERLGSLLQGFKR 247 (254) T ss_dssp TCCHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 9998999999999 No 3 >d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]} Probab=98.92 E-value=2.5e-09 Score=72.54 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=83.1 Q ss_pred EEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCC--HHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC----- Q ss_conf 389721567562014689846982567688750468999--8899986237838998078999999971354405----- Q gi|255764510|r 118 PLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP--ETTMKNLLQNADAILFYARSSVLYFFSLPLPAKI----- 190 (232) Q Consensus 118 ~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~----- 190 (232) +|. +.+.-..+.+.+-|++.|+.+..+++=+.++.+.. .+......++.|+++|||+.+|+.|++.+...+. T Consensus 3 r~~-~~~~r~~e~~~~lle~~G~~p~~~P~i~i~~~p~~~~~~~~~~~~~~~d~vvfTS~ngV~~~~~~l~~~~~~~~~~ 81 (254) T d1wd7a_ 3 RVA-YAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGP 81 (254) T ss_dssp EEE-ECCSTTHHHHHHHHHHTTCEEEECCCBCSSCEECTTHHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHH T ss_pred EEE-ECHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHH T ss_conf 265-2304448999999997799289833210360880456899986225999999989899999999998749527678 Q ss_pred --CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf --803997188999999976996699879999889999986 Q gi|255764510|r 191 --SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 191 --~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) +.+++|+|+.|++++++.|++++.+++ .+.+++++.+. T Consensus 82 l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~-~~s~~l~~~~~ 121 (254) T d1wd7a_ 82 LAKAFRLARGAKAARALKEAGLPPHAVGD-GTSKSLLPLLP 121 (254) T ss_dssp HHTSEEEESSHHHHHHHHHTTCCCSEECS-SSGGGGGGGCC T ss_pred HCCCEEEEECHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHH T ss_conf 41885999978999999973999853772-00799999873 No 4 >d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]} Probab=98.85 E-value=1.6e-08 Score=67.72 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=79.0 Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHH-------------CC Q ss_conf 6201468984698256768875046899988999862---3783899807899999997135440-------------58 Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLPLPAK-------------IS 191 (232) Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~-------------~~ 191 (232) .+.+.+.|.++|+.+..+++=+.++.. .+.+...+ .+.|+++|||+.+|+.|.+.+...+ .+ T Consensus 16 ~d~~~~~L~~~G~~~~~~P~i~i~~~~--~~~~~~~l~~~~~~d~iifTS~~aV~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (260) T d1jr2a_ 16 QDPYIRELGLYGLEATLIPVLSFEFLS--LPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNA 93 (260) T ss_dssp BCHHHHHHHTTTCEEEEEECEEEEECC--HHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHH T ss_pred CCHHHHHHHHCCCCEEEECCEEEEECC--HHHHHHHHHCHHHCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 019999999689928998988876088--388999872831166899917348999999877627641222444432115 Q ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 039971889999999769966998799998899999861 Q gi|255764510|r 192 AAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 192 ~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) .+++|+|+.|++++++.|++++ +.+.++.+++++.+.. T Consensus 94 ~~i~aVG~~Ta~~l~~~G~~~~-~~~~~~s~~l~~~~~~ 131 (260) T d1jr2a_ 94 KSVYVVGNATASLVSKIGLDTE-GETCGNAEKLAEYICS 131 (260) T ss_dssp SEEEECSHHHHHHHHHTTCCCS-CCSCSSHHHHHHHHHT T ss_pred CEEEEECHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHH T ss_conf 8499985799999998599752-0565307888998764 No 5 >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Probab=92.30 E-value=0.13 Score=26.15 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=53.4 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE--ECCC Q ss_conf 938985896886999999998798299942100000785200164475879998484679-9988620013630--0041 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI--FAIG 77 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~--~~vg 77 (232) ||||||.+.++ .-.+.|++.|+..+..+- .+++.+.....+.++|++++.|..-+ ..+.....+-.-+ +.+| T Consensus 5 mKILv~d~i~~--~a~~~L~~~g~~~v~~~~---~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gvG 79 (132) T d1sc6a2 5 IKFLLVEGVHQ--KALESLRAAGYTNIEFHK---GALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIG 79 (132) T ss_dssp CCEEECSCCCH--HHHHHHHHTTCCCEEECS---SCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSC T ss_pred CEEEEECCCCH--HHHHHHHHCCCEEEEECC---CCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEEEEECCC T ss_conf 88999789899--999999848999999579---9999999998656783999944643675552034442267774155 Q ss_pred HH--HHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 58--99997641012235444545678999 Q gi|255764510|r 78 EA--SACLARQKGFTQIFHGKDNSINLAKI 105 (232) Q Consensus 78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~l 105 (232) -. =..++.+.|......+.......++. T Consensus 80 ~D~IDl~aa~~~gI~V~ntp~~~~~svAe~ 109 (132) T d1sc6a2 80 TNQVDLDAAAKRGIPVFNAPFSSTQEAQEN 109 (132) T ss_dssp CTTBCHHHHHHTTCCEECCTTTCSHHHHHH T ss_pred CCCCCHHHHHHCCCEEEECCCCCHHHHHHH T ss_conf 455689999859988998999860699999 No 6 >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Probab=90.32 E-value=0.18 Score=25.31 Aligned_cols=51 Identities=6% Similarity=0.027 Sum_probs=35.5 Q ss_pred CEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC Q ss_conf 9389858--9688699999999879829994210000078520016447587999848 Q gi|255764510|r 1 MYIVITR--PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~ilitR--p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232) |||||.+ +.++...+.+.|++.|+++...-+.... ....++.+||.+|++- T Consensus 4 mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~-----~~p~~l~~~d~iii~G 56 (230) T d1o1ya_ 4 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGE-----KLERPLEEYSLVVLLG 56 (230) T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTC-----CCSSCGGGCSEEEECC T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCC-----CCCCCHHHCCEEEECC T ss_conf 0899997999989379999999789979999789987-----6876643378899829 No 7 >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Probab=82.49 E-value=0.55 Score=22.48 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=38.4 Q ss_pred CEEEEECC--HHH----HHHHHHHHHHCCCCEEEECCEEEECC----------------CC--CCCCCCCCCCCEEEEEC Q ss_conf 93898589--688----69999999987982999421000007----------------85--20016447587999848 Q gi|255764510|r 1 MYIVITRP--IKK----ALRTQEKIQKMGYIPVMMPLSYFIHD----------------RE--SVFLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~ilitRp--~~~----a~~~~~~L~~~G~~~i~~Pli~i~~~----------------~~--~~~~~~~~~~d~iiftS 56 (232) |||||.-- ... +...++-+++.|+++..+.+-+..+. .+ .....++.++|.|||-| T Consensus 3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~ii~gs 82 (201) T d1ydga_ 3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 82 (201) T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEC T ss_conf 57999996898389999999999998659779999855667642020136766088765672455455575388769825 Q ss_pred HHH-------HHHHHHH Q ss_conf 467-------9998862 Q gi|255764510|r 57 SES-------LSTLPAN 66 (232) Q Consensus 57 ~~a-------v~~~~~~ 66 (232) |.= ++.|... T Consensus 83 Pvy~~~~s~~~k~flDr 99 (201) T d1ydga_ 83 PTRFGGATSQMRAFIDT 99 (201) T ss_dssp EEETTEECHHHHHHHHT T ss_pred CEEEEECCCHHHHHHHH T ss_conf 51310026066779887 No 8 >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Probab=81.68 E-value=1.1 Score=20.62 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=48.8 Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCE---ECCC Q ss_conf 38985896886999999998798299942100000785200164475879998484679-9988620013630---0041 Q gi|255764510|r 2 YIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPI---FAIG 77 (232) Q Consensus 2 ~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~---~~vg 77 (232) |||||+|.++. ..+.|++. ++++..+..+ +.+.+.......++|+++.++..-+ +-+........++ +.+| T Consensus 3 kVlit~~~~~~--~~~~l~~~-~~v~~~~~~~--~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG 77 (129) T d1gdha2 3 KILITWPLPEA--AMARARES-YDVIAHGDDP--KITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIG 77 (129) T ss_dssp EEEESSCCCHH--HHHHHHTT-SEEEECCSTT--CCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSC T ss_pred EEEEECCCCHH--HHHHHHCC-CCEEEECCCC--CCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCEEEEECCCC T ss_conf 89991989999--99999758-9199808999--9999999998569989998387314467775650010055551569 Q ss_pred HH--HHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 58--9999764101223544454567899 Q gi|255764510|r 78 EA--SACLARQKGFTQIFHGKDNSINLAK 104 (232) Q Consensus 78 ~~--t~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232) -. =-+++.+.|......+...+...+| T Consensus 78 ~d~ID~~~a~~~gI~V~ntpg~~~~aVAE 106 (129) T d1gdha2 78 FDHIDLDACKARGIKVGNAPHGATQARED 106 (129) T ss_dssp CTTBCHHHHHHTTCEEECCCCSBHHHHHH T ss_pred CCCCCHHHHHHCCCEEEECCCCCCHHHHH T ss_conf 86436999986999899799977567999 No 9 >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=80.40 E-value=1.5 Score=19.91 Aligned_cols=174 Identities=13% Similarity=0.084 Sum_probs=88.7 Q ss_pred HHHHHHHHCCCCEEEECCEEEEC--CCCCCCCCCCCCCCEEEEECHH--HHHHHHHHHCCCCCEECCCHHHHHHHHHHCC Q ss_conf 99999998798299942100000--7852001644758799984846--7999886200136300041589999764101 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIH--DRESVFLAMQQSYGAIAITSSE--SLSTLPANFCRHTPIFAIGEASACLARQKGF 89 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~--~~~~~~~~~~~~~d~iiftS~~--av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232) .+.+.++++|++++..+.-.--+ .........-...|+||+.+.. ...........+.|+..++... .... T Consensus 21 ~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~-----~~~~ 95 (271) T d1jyea_ 21 AILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSD-----QTPI 95 (271) T ss_dssp HHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCT-----TSSS T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCC-----CCCC T ss_conf 99999998599899997999999999999999996599989951666742699999986399844310234-----4567 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCC-CCHHHHH Q ss_conf 22354445456789998642201277753897215675620-------146898469825676887504689-9988999 Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIA-YPETTMK 161 (232) Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~-~~~~~~~ 161 (232) ..+. .. .......+.+.... .+.+++.++.|...... +.+.+.+.+........ ..... ....... T Consensus 96 ~~V~--~D-~~~~~~~~~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 169 (271) T d1jyea_ 96 NSII--FS-HEDGTRLGVEHLVA-LGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAERE--GDWSAMSGFQQTM 169 (271) T ss_dssp CEEE--EC-HHHHHHHHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEE--CCSSHHHHHHHHH T ss_pred CCCC--CC-HHHCCCCCEEEEEC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEC--CCCCCCCCCCHHH T ss_conf 7334--33-11022100012201-12454332223445515776567887776641354210000--1111112442022 Q ss_pred HHH---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECC Q ss_conf 862---37838998078999999971354405----80399718 Q gi|255764510|r 162 NLL---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLS 198 (232) Q Consensus 162 ~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig 198 (232) .++ ..+++++..+...+..+.+.+...+. ++.++|++ T Consensus 170 ~~~~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~vp~di~Ii~~d 213 (271) T d1jyea_ 170 QMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYD 213 (271) T ss_dssp HHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEECSB T ss_pred HHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 33312456521112320444578786787505688557887652 No 10 >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Probab=79.12 E-value=1.6 Score=19.66 Aligned_cols=112 Identities=4% Similarity=-0.108 Sum_probs=65.7 Q ss_pred CCCCCCEEEEEC-CCC----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-H-CCCCEEEEECHH-----HHH Q ss_conf 127775389721-567----5620146898469825676887504689998899986-2-378389980789-----999 Q gi|255764510|r 112 LFTPQKPLIYLG-GKP----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-L-QNADAILFYARS-----SVL 179 (232) Q Consensus 112 ~~~~~~~vl~~~-g~~----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~-~~~d~i~f~S~~-----~v~ 179 (232) ...+..+|++-+ |.+ +...+...|+..|+.|..+..+ ..++.+... . .+.|.|.++|.. .+. T Consensus 33 ~~gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~------~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~ 106 (168) T d7reqa2 33 AEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF------QTPEETARQAVEADVHVVGVSSLAGGHLTLVP 106 (168) T ss_dssp HHSSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTT------BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHH T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCCC------CCHHHHHHHHHCCCCCEEEEECCCCCCHHHHH T ss_conf 608998699995786177899999999998678514207876------76899999997159988999557653367999 Q ss_pred HHHHHCCHHHC-CEEEEECC---HHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 99971354405-80399718---8999999976996699879999889999986 Q gi|255764510|r 180 YFFSLPLPAKI-SAAFLCLS---NNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 180 ~~~~~~~~~~~-~~~~~~ig---~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) .+.+.+...+. ++.+++-| +.-.+.+++.|...+.-+.++-.+...+.+. T Consensus 107 ~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~~~ 160 (168) T d7reqa2 107 ALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVK 160 (168) T ss_dssp HHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH T ss_conf 999999856999718998389898999999968978797968987999999999 No 11 >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} Probab=76.30 E-value=1.6 Score=19.65 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=19.2 Q ss_pred CEEEEEC--CHHH------HHHHHHHHHHCCCCEEEECC Q ss_conf 9389858--9688------69999999987982999421 Q gi|255764510|r 1 MYIVITR--PIKK------ALRTQEKIQKMGYIPVMMPL 31 (232) Q Consensus 1 M~ilitR--p~~~------a~~~~~~L~~~G~~~i~~Pl 31 (232) |||||.= |.++ +..+.+.+++.|.++-..=| T Consensus 3 mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL 41 (230) T d2qwxa1 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL 41 (230) T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 879999827998568999999999999967997999986 No 12 >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=74.99 E-value=1.3 Score=20.29 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 869999999987982999421000007852001644758799984846 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) -|..++..|.+.|+++....+-+....+......++.+||.++|-|+. T Consensus 20 ~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt 67 (148) T d1vmea1 20 VMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVST 67 (148) T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECE T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECC T ss_conf 999999999867996999964544321056766449778886999355 No 13 >d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]} Probab=66.94 E-value=3.2 Score=17.87 Aligned_cols=192 Identities=9% Similarity=-0.045 Sum_probs=100.1 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCCE----ECCCHHHHHH Q ss_conf 886999999998798299942100000785200164475879998484679998862001--3630----0041589999 Q gi|255764510|r 10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR--HTPI----FAIGEASACL 83 (232) Q Consensus 10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~~----~~vg~~t~~~ 83 (232) .+...+.+.|++.|++++..+.-.. .-.++....+...-+..++.....+...+.+ +.|+ +-....|.+. T Consensus 230 gD~~eik~lLe~~Gi~v~~~~~g~~----s~eei~~~~~A~lNlv~~~~~~~~~A~~Leek~GiP~~~~~~~G~~~T~~~ 305 (477) T d1m1na_ 230 GDAWSSRILLEEMGLRCVAQWSGDG----SISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIES 305 (477) T ss_dssp TTTHHHHHHHHHTTCEEEEEEETTC----CHHHHHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHHH T ss_pred CCHHHHHHHHHHCCCCEEEECCCCC----CHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHH T ss_conf 1699999999971687589768999----889998611142665506688999999999862755220446750579999 Q ss_pred HHHHCCCCCCCCCCCHH-----HHHHH--HHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCC Q ss_conf 76410122354445456-----78999--864220127775389721567562014689846982567688750468999 Q gi|255764510|r 84 ARQKGFTQIFHGKDNSI-----NLAKI--IVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP 156 (232) Q Consensus 84 ~~~~~~~~~~~~~~~~~-----~~~~l--l~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~ 156 (232) +++.............+ ..... ..........++++.+..|....-.+...|+..|..+... .|.... T Consensus 306 Lr~ia~~~g~~i~~~~e~~i~~e~~~~~~~l~~~r~~l~Gkrv~i~~~~~~~~~l~~~l~elGmevv~~-~~~~~~---- 380 (477) T d1m1na_ 306 LRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGT-GYEFAH---- 380 (477) T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEE-EESSCC---- T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEE-EECCCC---- T ss_conf 999999848973056899999899999999999987624882799668434899999999879978898-615777---- Q ss_pred HHHHHHHHC--CCCEEEEE--CHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEE Q ss_conf 889998623--78389980--789999999713544058039971889999999769966998 Q gi|255764510|r 157 ETTMKNLLQ--NADAILFY--ARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTV 215 (232) Q Consensus 157 ~~~~~~~~~--~~d~i~f~--S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~v 215 (232) .+....... ..+.+++. +......+++...+ -+++-|......+++.|..-..+ T Consensus 381 ~~d~~~~~~~~~~~~~i~~d~~~~el~~~i~~~~p-----DL~ig~~~~k~~a~k~gIP~~~~ 438 (477) T d1m1na_ 381 NDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKP-----DLIGSGIKEKFIFQKMGIPFREM 438 (477) T ss_dssp HHHHHTTTTTSCTTCEEEESCBHHHHHHHHHHHCC-----SEEEECHHHHHHHHHTTCCEEES T ss_pred HHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCC-----CEEEECCHHHHHHHHCCCCCCCC T ss_conf 67899999866988689568999999999986599-----99997850589999819996217 No 14 >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=60.43 E-value=3.5 Score=17.63 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=31.2 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 9389858968-86999999998798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) |||+|.--.. ...-.++.|++.|.++...|- +.....+.+||.||++-. T Consensus 2 ~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~--------d~~~~~~~~~dgiIl~Gg 51 (196) T d2a9va1 2 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPN--------DIDSSELDGLDGLVLSGG 51 (196) T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEET--------TSCGGGGTTCSEEEEEEE T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC--------CCCHHHHHCCCCEEEECC T ss_conf 88999989872999999999978986999939--------899899726880799336 No 15 >d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} Probab=58.66 E-value=4.6 Score=16.96 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=13.3 Q ss_pred HHHHHHHHHCCCCEEEECC Q ss_conf 9999999987982999421 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPL 31 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pl 31 (232) +.+.+.|++.|.++...=| T Consensus 23 ~~~~~~l~~~G~eV~~~DL 41 (273) T d1d4aa_ 23 EAAAAALKKKGWEVVESDL 41 (273) T ss_dssp HHHHHHHHHTTCEEEEEET T ss_pred HHHHHHHHHCCCEEEEEEC T ss_conf 9999999878798999988 No 16 >d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]} Probab=57.37 E-value=4.8 Score=16.83 Aligned_cols=45 Identities=20% Similarity=0.076 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC Q ss_conf 8699999999879829994210000078520016447587999848 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232) .+..+.+.|++.|+++.++|.-+.... .+.....+.+||.||+.- T Consensus 31 g~~~l~~aL~~~~~~v~~~~~~~~~~~-fP~~~~~l~~yDvvIl~D 75 (246) T d2gk3a1 31 GATWLLECLRKGGVDIDYMPAHTVQIA-FPESIDELNRYDVIVISD 75 (246) T ss_dssp SCHHHHHHHHHTTCEEEEECHHHHHHC-CCCSHHHHHTCSEEEEES T ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHH-CCCCHHHHHCCCEEEEEC T ss_conf 639999999757950899415013543-754887872389999936 No 17 >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Probab=55.36 E-value=5.2 Score=16.63 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=22.9 Q ss_pred HCCCCEEEEECHHHHHHHHHH--CCHHHCCEE--EEECCHHHHHHHHHCCCCEEEE Q ss_conf 237838998078999999971--354405803--9971889999999769966998 Q gi|255764510|r 164 LQNADAILFYARSSVLYFFSL--PLPAKISAA--FLCLSNNIASAIPASYKNVVTV 215 (232) Q Consensus 164 ~~~~d~i~f~S~~~v~~~~~~--~~~~~~~~~--~~~ig~~tA~~~~~~g~~~~~v 215 (232) +++.++++..++.-..+..-. +.......+ .-+-.+.-.+.+++.|...++. T Consensus 69 i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~ 124 (153) T d1id1a_ 69 IDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILS 124 (153) T ss_dssp TTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEEC T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEC T ss_conf 40287999904548888899999998589873699976988999999779999998 No 18 >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=54.09 E-value=5.4 Score=16.50 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=19.7 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 93898589688699999999879829994 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~ 29 (232) |||+|.=-..-+..++..|.+.|++++.. T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vi 29 (132) T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLI 29 (132) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEE T ss_conf 98999898899999999999779972002 No 19 >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Probab=53.26 E-value=5.6 Score=16.42 Aligned_cols=100 Identities=8% Similarity=0.028 Sum_probs=49.2 Q ss_pred CEEEEECCHHHHHH-HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHC-CCCC---EE Q ss_conf 93898589688699-9999998798299942100000785200164475879998484679-99886200-1363---00 Q gi|255764510|r 1 MYIVITRPIKKALR-TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFC-RHTP---IF 74 (232) Q Consensus 1 M~ilitRp~~~a~~-~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~-~~~~---~~ 74 (232) |||+++.+.+.-.. +.+..++.|+++...|-.. . ........++|+|+..+..-+ +.+...+. .+.+ .+ T Consensus 1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~----~-~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~ 75 (131) T d1dxya2 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFL----D-ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR 75 (131) T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCC----C-TTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEES T ss_pred CEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCC----C-HHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEC T ss_conf 9899992275758999998877693999868999----8-8999883699899994688889899852334774799871 Q ss_pred CCCHH--HHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 04158--99997641012235444545678999 Q gi|255764510|r 75 AIGEA--SACLARQKGFTQIFHGKDNSINLAKI 105 (232) Q Consensus 75 ~vg~~--t~~~~~~~~~~~~~~~~~~~~~~~~l 105 (232) .+|-. =.+++.+.|......+.......++. T Consensus 76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~ 108 (131) T d1dxya2 76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNM 108 (131) T ss_dssp SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHH T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH T ss_conf 554466444311343489995799785459999 No 20 >d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Probab=52.40 E-value=5.8 Score=16.34 Aligned_cols=103 Identities=10% Similarity=-0.110 Sum_probs=43.3 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHHHC-- Q ss_conf 777538972156756201468984698256768875046899988999862-37838998078999999971354405-- Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPAKI-- 190 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~~~-- 190 (232) ..+..|+-.|....-..+.....+.|.... +.+=++.|.-.-.....++. .++++.++.-+ ++-.+++....--. T Consensus 107 ~~g~~ILT~~~S~tv~~~l~~a~~~gk~~~-V~v~EsrP~~eG~~la~~L~~~GI~vtlI~Ds-a~~~~m~~~d~VivGA 184 (274) T d1vb5a_ 107 DDGDVIITHSFSSTVLEIIRTAKERKKRFK-VILTESSPDYEGLHLARELEFSGIEFEVITDA-QMGLFCREASIAIVGA 184 (274) T ss_dssp CTTEEEECCSCCHHHHHHHHHHHHTTCCEE-EEEECCTTTTHHHHHHHHHHHTTCCEEEECGG-GHHHHHTTCSEEEECC T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCHHHHHHHHHHCCCCEEEECCH-HHHHHHHCCCEEEEEE T ss_conf 999889981843899999999998699728-99967876555099999998749951784404-8999964088799954 Q ss_pred ------CEEEEECCHH-HHHHHHHCCCCEEEECCC Q ss_conf ------8039971889-999999769966998799 Q gi|255764510|r 191 ------SAAFLCLSNN-IASAIPASYKNVVTVACF 218 (232) Q Consensus 191 ------~~~~~~ig~~-tA~~~~~~g~~~~~va~~ 218 (232) ...+--+|.. .|-.++..|.....+|+. T Consensus 185 d~v~~nG~v~nkiGT~~~A~~Ak~~~vP~~V~a~~ 219 (274) T d1vb5a_ 185 DMITKDGYVVNKAGTYLLALACHENAIPFYVAAET 219 (274) T ss_dssp SEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG T ss_pred EEEECCCCEEECCCHHHHHHHHHHCCCCCEEECCC T ss_conf 59953898775450558999999749985473144 No 21 >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Probab=51.75 E-value=5.9 Score=16.27 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=32.4 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 9389858968869999999987982999421000007852001644758799984846 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) |||-|.-=...-....+.|++.|+++.... ...++.++|.||++-.. T Consensus 7 mkIgii~~~Gn~~s~~~al~~~G~~~~~v~-----------~~~~l~~~D~lIlPGG~ 53 (202) T d1q7ra_ 7 MKIGVLGLQGAVREHVRAIEACGAEAVIVK-----------KSEQLEGLDGLVLPGGE 53 (202) T ss_dssp CEEEEESCGGGCHHHHHHHHHTTCEEEEEC-----------SGGGGTTCSEEEECCCC T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECCCC T ss_conf 879999789989999999998799299989-----------98997128989987988 No 22 >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Probab=49.91 E-value=6.3 Score=16.10 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=53.7 Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-H-CCCCEEEEEC--HHHHHH---HHHHCCHHH-CCEEEEECC- Q ss_conf 620146898469825676887504689998899986-2-3783899807--899999---997135440-580399718- Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-L-QNADAILFYA--RSSVLY---FFSLPLPAK-ISAAFLCLS- 198 (232) Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~-~~~d~i~f~S--~~~v~~---~~~~~~~~~-~~~~~~~ig- 198 (232) ...+...|+..|++|..+-... | .+.+..+ . .++|.|.+++ ...... +.+.+.... .++.+++-| T Consensus 20 ~~mva~~l~~~G~~V~~LG~~~--p----~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~l~~~~~~~i~iivGG~ 93 (137) T d1ccwa_ 20 NKILDHAFTNAGFNVVNIGVLS--P----QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137) T ss_dssp HHHHHHHHHHTTCEEEEEEEEE--C----HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEES T ss_pred HHHHHHHHHHCCCEEEECCCCC--C----HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999999997897677223456--9----999999998439877887511441147799999999873148987999478 Q ss_pred --------HHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf --------8999999976996699879999889999986 Q gi|255764510|r 199 --------NNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 199 --------~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) +..+..+++.|+..+.-+. .+.+.+++.|. T Consensus 94 ~~~~~~~~~~~~~~l~~~Gv~~if~~~-t~~~~~~~~l~ 131 (137) T d1ccwa_ 94 IVVGKQHWPDVEKRFKDMGYDRVYAPG-TPPEVGIADLK 131 (137) T ss_dssp CSSSSCCHHHHHHHHHHTTCSEECCTT-CCHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHCCCCEEECCC-CCHHHHHHHHH T ss_conf 677764618789999976978898999-99999999999 No 23 >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Probab=49.60 E-value=5.3 Score=16.55 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=26.8 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 69999999987982999421000007852001644758799984846 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) +...++.+++.|.++....+.+..+ ......+.+||.|+|-||. T Consensus 20 A~~Ia~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~d~ii~Gspt 63 (149) T d1ycga1 20 AHALMDGLVAGGCEVKLFKLSVSDR---NDVIKEILDARAVLVGSPT 63 (149) T ss_dssp HHHHHHHHHHTTCEEEEEEGGGSCH---HHHHHHHHHCSEEEEECCC T ss_pred HHHHHHHHHHCCCEEEEEECCCCCH---HHHHHHHHHCCEEEEEEEC T ss_conf 9999999875698269997143556---8775436417849999603 No 24 >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Probab=49.02 E-value=5.2 Score=16.62 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=24.9 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECC Q ss_conf 9389858968-869999999987982999421 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPL 31 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pl 31 (232) ||||||=-.. =+..+++.|.+.|++++..-. T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r 33 (281) T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDV 33 (281) T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECT T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 87999799988999999999868898999204 No 25 >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Probab=47.76 E-value=6.8 Score=15.89 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=24.3 Q ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEEEE Q ss_conf 93898589688-699999999879829994 Q gi|255764510|r 1 MYIVITRPIKK-ALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~~-a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=.... +..++..|.+.|++++.+ T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~ 30 (338) T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30 (338) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 979998988789999999999784979999 No 26 >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Probab=47.08 E-value=6.1 Score=16.18 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=24.7 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 69999999987982999421000007852001644758799984846 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) +...++.|.+.|+++....+-+. ..+.....+.+||.++|-||. T Consensus 20 A~~Ia~~l~~~g~ev~~~~~~~~---~~~~~~~~l~~~d~vi~Gspt 63 (152) T d1e5da1 20 ARVLAESFRDEGCTVKLMWCKAC---HHSQIMSEISDAGAVIVGSPT 63 (152) T ss_dssp HHHHHHHHHHTTCEEEEEETTTS---CHHHHHHHHHTCSEEEEECCC T ss_pred HHHHHHHHHHCCCEEEEEECCCC---CHHHHCCCHHHCCEEEEECCC T ss_conf 99999998657977998306667---866640113118989994365 No 27 >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=45.85 E-value=7.3 Score=15.72 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=40.4 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHH Q ss_conf 7775389721567562014689846982567688750468999889998623783899807899 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~ 177 (232) ..++++.++........+.+.++..|..|..+.-+...........+.+++...|+|+..-|.+ T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~ 103 (181) T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN 103 (181) T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS T ss_pred CCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHCCCHHHCCCCCC T ss_conf 3573478703434653210013201122211246554342045302023220000211012122 No 28 >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} Probab=43.77 E-value=7.9 Score=15.52 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=66.5 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCC--CHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC Q ss_conf 2777538972156756201468984698256768875046899--98899986237838998078999999971354405 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY--PETTMKNLLQNADAILFYARSSVLYFFSLPLPAKI 190 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~ 190 (232) ...+++|.++. .- + +.+.+++.+..+ .++++.|... ........+...|++++|.++-+..=++.+..... T Consensus 119 ~~~g~kV~vIG-~~--P-~v~~l~~~~~~~---~VlE~~p~~gd~p~~~~~~lLp~aD~viiTGsTlvN~Tl~~LL~~~~ 191 (251) T d2h1qa1 119 EVKGKKVGVVG-HF--P-HLESLLEPICDL---SILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSR 191 (251) T ss_dssp TTTTSEEEEES-CC--T-THHHHHTTTSEE---EEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTT T ss_pred CCCCCEEEEEE-CC--H-HHHHHHHCCCCE---EEEECCCCCCCCCCHHHHHHHHCCCEEEEEECHHHCCCHHHHHHHCC T ss_conf 25798899991-46--6-289998568967---99967888789882677776511889999831554178899997377 Q ss_pred C-EEEEECCHHHH--HHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 8-03997188999--999976996699879999889999986 Q gi|255764510|r 191 S-AAFLCLSNNIA--SAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 191 ~-~~~~~ig~~tA--~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) + ..++-+||++- -.+-+.|...+.-..--|.+.++++|+ T Consensus 192 ~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~ 233 (251) T d2h1qa1 192 NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVA 233 (251) T ss_dssp TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHT T ss_pred CCCEEEEECCCCCCCHHHHHCCCCEEEEEEEECHHHHHHHHH T ss_conf 677799988986557888836976686789867999999997 No 29 >d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Probab=42.87 E-value=8.2 Score=15.44 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCC------------CCCCCCCCCCCCEEEEECHH Q ss_conf 8699999999879829994210000078------------52001644758799984846 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDR------------ESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~------------~~~~~~~~~~~d~iiftS~~ 58 (232) =+...++-+++.|+++....+-++.... ......++.+||.|||-||. T Consensus 18 la~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ii~gsP~ 77 (196) T d2a5la1 18 MARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT 77 (196) T ss_dssp HHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEEC T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCHHHHHHCCEEEEECCH T ss_conf 999999998636977999853554427887612465333300245566326988993352 No 30 >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Probab=37.05 E-value=10 Score=14.89 Aligned_cols=50 Identities=16% Similarity=-0.057 Sum_probs=31.1 Q ss_pred CEEEEECCHH----HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 9389858968----86999999998798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRPIK----KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp~~----~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) |+|+.--... -+..+++.|.+.|.++...++-+..+ .++.++|.++|-++ T Consensus 1 i~IvY~S~tGnT~~vA~~ia~~l~~~g~~v~~~~~~~~~~-------~~l~~~~~~i~g~p 54 (138) T d5nula_ 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNI-------DELLNEDILILGCS 54 (138) T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH-------HHHTTCSEEEEEEC T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC-------CCCCCCCEEEEEEE T ss_conf 9999999671799999999999875598442123320233-------31124876999980 No 31 >d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} Probab=36.40 E-value=10 Score=14.82 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=10.0 Q ss_pred CCCCCEEEEECHH Q ss_conf 4758799984846 Q gi|255764510|r 46 QQSYGAIAITSSE 58 (232) Q Consensus 46 ~~~~d~iiftS~~ 58 (232) +.++|.|||.||. T Consensus 77 i~~AD~iI~~sP~ 89 (232) T d1sqsa_ 77 LLESDIIIISSPV 89 (232) T ss_dssp HHHCSEEEEEEEE T ss_pred HHHCCEEEEEECC T ss_conf 9968989997140 No 32 >d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} Probab=34.48 E-value=11 Score=14.64 Aligned_cols=207 Identities=11% Similarity=0.044 Sum_probs=101.9 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC---CCCCCCCCCCCCEEEEECHH---HHHHHHHHHCCCCCEECCCHHHH-HHHHH Q ss_conf 9999999879829994210000078---52001644758799984846---79998862001363000415899-99764 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR---ESVFLAMQQSYGAIAITSSE---SLSTLPANFCRHTPIFAIGEASA-CLARQ 86 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~---~~~~~~~~~~~d~iiftS~~---av~~~~~~~~~~~~~~~vg~~t~-~~~~~ 86 (232) -+.+.++++|+++..+-.-.-.... ...........|+||+++.+ ....+........++........ ..... T Consensus 22 g~~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~~~~~~gipvv~~d~~~~~~~~~~ 101 (288) T d1guda_ 22 GIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKK 101 (288) T ss_dssp HHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHHHHH T ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCC T ss_conf 99999997399799996589899999999999999669998997247840212899999728974999678876433333 Q ss_pred HCCCCCCCCCCC----HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCC Q ss_conf 101223544454----56789998642201277753897215675620-------1468984698256768875046899 Q gi|255764510|r 87 KGFTQIFHGKDN----SINLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAY 155 (232) Q Consensus 87 ~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~ 155 (232) .+.........+ +....+.+... ...+++++++..|...... +.+.+...+ .++.+..|....... T Consensus 102 ~~~~~~~~v~~d~~~~g~~~~~~l~~~--~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 178 (288) T d1guda_ 102 AGGNVEAFVTTDNVAVGAKGASFIIDK--LGAEGGEVAIIEGKAGNASGEARRNGATEAFKKAS-QIKLVASQPADWDRI 178 (288) T ss_dssp TTCCCSEEEECCHHHHHHHHHHHHHHH--HGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCT-TEEEEEEEECTTCHH T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHH--HCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCCEEEECCCHHH T ss_conf 478701699457899999999999997--06677446314788533045678876531312223-454330220310256 Q ss_pred CH-HHHHHHH---CCCCEEEEECHHHHHHHHHHCCHHHC--CEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHHH Q ss_conf 98-8999862---37838998078999999971354405--8039971--889999999769966998799998899 Q gi|255764510|r 156 PE-TTMKNLL---QNADAILFYARSSVLYFFSLPLPAKI--SAAFLCL--SNNIASAIPASYKNVVTVACFPKETSL 224 (232) Q Consensus 156 ~~-~~~~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~--~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~l 224 (232) .. .....++ .++++|+..+...+....+.+...+. ++.++.+ ++.+.+.+++..+ ...+...|...+- T Consensus 179 ~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~ivg~D~~~~~~~~i~~g~i-~~ti~~~~~~~g~ 254 (288) T d1guda_ 179 KALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQM-TATVAQNPADIGA 254 (288) T ss_dssp HHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHHTSS-CEEEECCHHHHHH T ss_pred HHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCC-EEEEECCHHHHHH T ss_conf 799888876405765213441487899999999997599987499955798999998644995-2999459999999 No 33 >d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=33.00 E-value=12 Score=14.49 Aligned_cols=52 Identities=8% Similarity=-0.130 Sum_probs=34.3 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE Q ss_conf 89858968869999999987982999421000007852001644758799984 Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT 55 (232) Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift 55 (232) ||..|...+-.++.+.+++.|+++..+...+..-. .......+..+|.++-= T Consensus 4 ily~~~R~eEk~L~~a~~~rG~~~~~id~~~~~~~-l~~~~~~~~~~D~Vi~R 55 (88) T d1uc8a1 4 ILYDRIRPDERMLFERAEALGLPYKKVYVPALPMV-LGERPKELEGVTVALER 55 (88) T ss_dssp EEESSCCHHHHHHHHHHHHHTCCEEEEEGGGCCEE-TTBCCGGGTTCCEEEEC T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEEHHHCEEE-CCCCCCCCCCCCEEEEE T ss_conf 99726318899999999987993999864442798-56888765778899980 No 34 >d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} Probab=33.00 E-value=12 Score=14.49 Aligned_cols=13 Identities=0% Similarity=-0.054 Sum_probs=7.9 Q ss_pred CCCCCCEEEEECH Q ss_conf 4475879998484 Q gi|255764510|r 45 MQQSYGAIAITSS 57 (232) Q Consensus 45 ~~~~~d~iiftS~ 57 (232) .+..+|.|||.|| T Consensus 64 ~l~~AD~ii~~sP 76 (179) T d1rlia_ 64 RILQCHILIFATP 76 (179) T ss_dssp HHHTCSEEEEEEE T ss_pred HHHHCCEEEEEEC T ss_conf 9996895899602 No 35 >d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} Probab=32.53 E-value=12 Score=14.44 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=15.8 Q ss_pred CEEEEE----CCHHHHHHHHHHHHHC---CCCEEE Q ss_conf 938985----8968869999999987---982999 Q gi|255764510|r 1 MYIVIT----RPIKKALRTQEKIQKM---GYIPVM 28 (232) Q Consensus 1 M~ilit----Rp~~~a~~~~~~L~~~---G~~~i~ 28 (232) |||++. |+...+..++..+.+. |.++-. T Consensus 1 MKIl~i~GS~r~~s~s~~l~~~~~~~~~~~~ev~~ 35 (174) T d1rtta_ 1 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIEL 35 (174) T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEE T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 97999979899888899999999986579988999 No 36 >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Probab=31.89 E-value=12 Score=14.38 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 886999999998798299942100000785200164475879998484 Q gi|255764510|r 10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) .-+..+++.|++.|.++...++-+.. ..++.++|.|+|-|+ T Consensus 15 ~~A~~ia~~l~~~g~~v~~~~~~~~~-------~~~l~~~d~ii~g~p 55 (137) T d2fz5a1 15 AMANEIEAAVKAAGADVESVRFEDTN-------VDDVASKDVILLGCP 55 (137) T ss_dssp HHHHHHHHHHHHTTCCEEEEETTSCC-------HHHHHTCSEEEEECC T ss_pred HHHHHHHHHHHHCCCCEEEEEHHHHH-------HHHHHCCCEEEEEEE T ss_conf 99999999987569822785435677-------766503653999994 No 37 >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Probab=29.29 E-value=14 Score=14.11 Aligned_cols=29 Identities=24% Similarity=0.055 Sum_probs=23.4 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=-.. -+..++..|.+.|.+++.. T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~ 30 (361) T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVN 30 (361) T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 979998887679999999999779978999 No 38 >d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=28.62 E-value=14 Score=14.04 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=25.2 Q ss_pred CEEEE-ECCHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 93898-5896886999999998798299942 Q gi|255764510|r 1 MYIVI-TRPIKKALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ili-tRp~~~a~~~~~~L~~~G~~~i~~P 30 (232) |||++ |.....-.++...|...|++++.+. T Consensus 1 MKi~~aT~N~~K~~E~~~lL~~~~i~v~~~~ 31 (186) T d1v7ra_ 1 MKIFFITSNPGKVREVANFLGTFGIEIVQLK 31 (186) T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEEC T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEECC T ss_conf 9799988988899999997505597698657 No 39 >d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Probab=28.45 E-value=14 Score=14.02 Aligned_cols=94 Identities=9% Similarity=0.051 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEEC Q ss_conf 78999864220127775389721567-----56201468984698256768875046899988999862-3783899807 Q gi|255764510|r 101 NLAKIIVEQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYA 174 (232) Q Consensus 101 ~~~~ll~~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S 174 (232) .....+..........+++.++..+. ....+.+.+.+.|..+.....|.... .+....+..+. .++|+|++.. T Consensus 123 ~~~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~d~~~~~~~i~~~~~d~v~~~~ 201 (346) T d1usga_ 123 SQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGE-KDFSALIARLKKENIDFVYYGG 201 (346) T ss_dssp GHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTC-CCCHHHHHHHHHTTCCEEEEES T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCHHHHHHHHHCCCCCEEEEEC T ss_conf 678888864321145512577327404649999987655413442279887347100-1003577786446987899956 Q ss_pred -HHHHHHHHHHCCHHHCCEEEE Q ss_conf -899999997135440580399 Q gi|255764510|r 175 -RSSVLYFFSLPLPAKISAAFL 195 (232) Q Consensus 175 -~~~v~~~~~~~~~~~~~~~~~ 195 (232) ......+++.+...+....++ T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~ 223 (346) T d1usga_ 202 YYPEMGQMLRQARSVGLKTQFM 223 (346) T ss_dssp CHHHHHHHHHHHHHTTCCCEEE T ss_pred CCHHHHHEEECCCCCCCCCEEE T ss_conf 6366654130012445564277 No 40 >d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]} Probab=27.94 E-value=14 Score=13.97 Aligned_cols=89 Identities=7% Similarity=0.010 Sum_probs=54.7 Q ss_pred CCCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEE----CCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHH Q ss_conf 777538972156-7562014689846982567688750----46899988999862378389980789999999713544 Q gi|255764510|r 114 TPQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYS----QDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPA 188 (232) Q Consensus 114 ~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~----~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~ 188 (232) ...+.|--|+.. +-.+++.+.|+++|+.+..+..--- .|+. +.+..- .-..-...-|..+++.+.+.-.. T Consensus 174 ~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~vTLHVG~GTF~Pv~---~~~~~H-~mH~E~~~i~~~t~~~i~~ak~~- 248 (344) T d1wdia_ 174 RRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK---GDPEKH-EMHAEPYAIPEEVAEAVNRAKAE- 248 (344) T ss_dssp ------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC-------------CCCEEEEECHHHHHHHHHHHHT- T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCC---CCCCCC-CCCCEEEEECHHHHHHHHHHHHC- T ss_conf 6898751664557789999999997406156799962344335533---432357-88874999839999999999973- Q ss_pred HCCEEEEECCHHHHHHHHHCC Q ss_conf 058039971889999999769 Q gi|255764510|r 189 KISAAFLCLSNNIASAIPASY 209 (232) Q Consensus 189 ~~~~~~~~ig~~tA~~~~~~g 209 (232) .-+++|+|-++..+++... T Consensus 249 --g~rIiAVGTT~~RaLEs~~ 267 (344) T d1wdia_ 249 --GRRVVAVGTTVVRALESAY 267 (344) T ss_dssp --TCCEEEESHHHHHHHHHTE T ss_pred --CCCEEEEEHHHHHHHHHHH T ss_conf --9958999578999999999 No 41 >d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} Probab=27.91 E-value=14 Score=13.96 Aligned_cols=200 Identities=16% Similarity=0.105 Sum_probs=92.9 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHH--H-HHHHHHHHCCCCCEECCCHHHHHHHHHHCC Q ss_conf 99999998798299942100000785-2001644758799984846--7-999886200136300041589999764101 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSE--S-LSTLPANFCRHTPIFAIGEASACLARQKGF 89 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~--a-v~~~~~~~~~~~~~~~vg~~t~~~~~~~~~ 89 (232) -..+.++++|++++.++.-.-..... ..........|++++.+.. + ...+........|+..++... .... T Consensus 22 gi~~~a~~~g~~~~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~-----~~~~ 96 (271) T d2dria_ 22 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA-----TKGE 96 (271) T ss_dssp HHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC-----SSSC T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCC-----CCCC T ss_conf 99999997499899996899999999999999862876311212223214789999751421589843665-----5554 Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHH-HH Q ss_conf 223544454567899986422-01277753897215675620-------1468984698256768875046899988-99 Q gi|255764510|r 90 TQIFHGKDNSINLAKIIVEQK-VLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPET-TM 160 (232) Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~ 160 (232) ........ .......+.++. ....++.+++++.|...... +.+.+...+........+.. ...... .. T Consensus 97 ~~~~V~~d-~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~ 173 (271) T d2dria_ 97 VVSHIASD-NVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADF--DRIKGLNVM 173 (271) T ss_dssp CSEEEEEC-HHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEECTT--CHHHHHHHH T ss_pred CCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECC--HHHHHHHHH T ss_conf 41388521-336699999999996699967999968988778999987488775123344421000010--233200057 Q ss_pred HHHH---CCCCEEEEECHHHHHHHHHHCCHHHC-CEEEEECC--HHHHHHHHHCCCCEEEECCCCCHH Q ss_conf 9862---37838998078999999971354405-80399718--899999997699669987999988 Q gi|255764510|r 161 KNLL---QNADAILFYARSSVLYFFSLPLPAKI-SAAFLCLS--NNIASAIPASYKNVVTVACFPKET 222 (232) Q Consensus 161 ~~~~---~~~d~i~f~S~~~v~~~~~~~~~~~~-~~~~~~ig--~~tA~~~~~~g~~~~~va~~p~~~ 222 (232) .... .++++|+..+-..+....+.+...+. .+.++++. +.+...+ ..|.....+...|..- T Consensus 174 ~~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~iig~d~~~~~~~~i-~~g~~~~ti~~~~~~~ 240 (271) T d2dria_ 174 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAV-NDGKLAATIAQLPDQI 240 (271) T ss_dssp HHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEECCHHHHHHH-HTTSSCEEEECCHHHH T ss_pred HHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH-HCCCCEEEEECCHHHH T ss_conf 788741568507961567878899999998389987667776888999997-4599659995599999 No 42 >d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]} Probab=27.72 E-value=14 Score=13.94 Aligned_cols=35 Identities=6% Similarity=-0.060 Sum_probs=28.8 Q ss_pred EECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 97188999999976996699879999889999986 Q gi|255764510|r 195 LCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 195 ~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) .-||+.-.+.+++.|.+.+.+++..+.+..++.|+ T Consensus 74 ~~iG~~a~~~L~~~GI~vi~~~~~~~ie~al~~l~ 108 (123) T d1p90a_ 74 VSIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQ 108 (123) T ss_dssp SBCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH T ss_conf 77786389999978958999189984999999999 No 43 >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=26.95 E-value=15 Score=13.86 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=25.0 Q ss_pred CEEEEE-CCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 938985-89688699999999879829994 Q gi|255764510|r 1 MYIVIT-RPIKKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilit-Rp~~~a~~~~~~L~~~G~~~i~~ 29 (232) |||.|+ =...-+..++..|.+.|++++.. T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~ 30 (212) T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVG 30 (212) T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEE T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEE T ss_conf 979999488399999999999879989999 No 44 >d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]} Probab=25.60 E-value=13 Score=14.26 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=22.5 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCCCC-CCCCCCCEEEEECHHHH Q ss_conf 9999999987982999421000007852001-64475879998484679 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFL-AMQQSYGAIAITSSESL 60 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~-~~~~~~d~iiftS~~av 60 (232) ..++.+|++.|++++..+.+.-.+..-.... ....++|.||.|-.-++ T Consensus 34 ~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~DlvIttGG~s~ 82 (144) T d1wu2a3 34 IMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAF 82 (144) T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----- T ss_pred HHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf 6776641135862267777256389999999975500568987166445 No 45 >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Probab=23.88 E-value=17 Score=13.51 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=20.4 Q ss_pred EEEEECCH---HHHHHHHHHHHHCCCCEEEE Q ss_conf 38985896---88699999999879829994 Q gi|255764510|r 2 YIVITRPI---KKALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 2 ~ilitRp~---~~a~~~~~~L~~~G~~~i~~ 29 (232) .+|||=-. .=+..++..|.+.|++++.. T Consensus 10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~ 40 (256) T d1ulua_ 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALS 40 (256) T ss_dssp EEEEESCCCSSSHHHHHHHHHHHTTCEEEEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 7999799998669999999999879999998 No 46 >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Probab=23.51 E-value=17 Score=13.47 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=21.4 Q ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEE Q ss_conf 93898589688-6999999998798299 Q gi|255764510|r 1 MYIVITRPIKK-ALRTQEKIQKMGYIPV 27 (232) Q Consensus 1 M~ilitRp~~~-a~~~~~~L~~~G~~~i 27 (232) ||||||=.... +..++..|.+.|+++. T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~ 28 (322) T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV 28 (322) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTS T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCC T ss_conf 9799988877899999999997799766 No 47 >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=23.43 E-value=17 Score=13.46 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=24.2 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 9389858968-8699999999879829994 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=... -+..++..|-+.|++++.+ T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~i 31 (393) T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIV 31 (393) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 989998998489999999999785989999 No 48 >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=23.13 E-value=18 Score=13.42 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=23.8 Q ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEEEE Q ss_conf 93898589688-699999999879829994 Q gi|255764510|r 1 MYIVITRPIKK-ALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 1 M~ilitRp~~~-a~~~~~~L~~~G~~~i~~ 29 (232) ||||||=-... +..++..|.+.|++++.+ T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~ 45 (363) T d2c5aa1 16 LKISITGAGGFIASHIARRLKHEGHYVIAS 45 (363) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 879997888789999999999782989999 No 49 >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Probab=22.88 E-value=18 Score=13.39 Aligned_cols=30 Identities=13% Similarity=-0.195 Sum_probs=26.0 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 938985896886999999998798299942 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~P 30 (232) |||+|.=.-.-+..++..|.+.|+++...- T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~ 30 (167) T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWL 30 (167) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 989999958999999999998799459997 No 50 >d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]} Probab=22.87 E-value=18 Score=13.39 Aligned_cols=132 Identities=11% Similarity=-0.012 Sum_probs=73.8 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC--CCCE----ECCCHHHHHH Q ss_conf 886999999998798299942100000785200164475879998484679998862001--3630----0041589999 Q gi|255764510|r 10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCR--HTPI----FAIGEASACL 83 (232) Q Consensus 10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~--~~~~----~~vg~~t~~~ 83 (232) .+..++.+.|++.|+++..++.-... -.++........-+..++.....+...+.+ +.|+ ......|.+. T Consensus 219 ~D~~eikrlL~~~Gi~v~~~~~g~~s----~eei~~~~~A~lnlv~~~~~~~~~A~~Lee~~GiP~~~~~p~G~~~T~~~ 294 (525) T d1mioa_ 219 GDAWEMDRVLEKIGYHVNATLTGDAT----YEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDGIVET 294 (525) T ss_dssp SHHHHHHHHHHHHTCEEEEEEETTCC----HHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC----HHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHH T ss_conf 30999999999757983586388665----78887435542876406478999999999973932671476660337999 Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHH----------HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE Q ss_conf 764101223544454567899986----------4220127775389721567562014689846982567688 Q gi|255764510|r 84 ARQKGFTQIFHGKDNSINLAKIIV----------EQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC 147 (232) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~----------~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v 147 (232) +++.......... .+...+.+. ........++++.+..|....-.+...|+..|..+...-. T Consensus 295 Lr~ia~~~g~~~~--~~~~ee~I~~e~~~~~~~l~~~~~~L~GKrv~i~~g~~~~~~~~~~l~elGmevv~~g~ 366 (525) T d1mioa_ 295 LRDMAKCFDDPEL--TKRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGF 366 (525) T ss_dssp HHHHHHHSCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEE T ss_pred HHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 9999998399505--67899999999999999999999760798658836853789999999986996998545 No 51 >d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Probab=22.69 E-value=18 Score=13.37 Aligned_cols=101 Identities=7% Similarity=-0.016 Sum_probs=44.0 Q ss_pred CCCCEEEEECCCCCC--------CCHHHHHHHCCCEEEEEEEEEECCCCCCHH--HHH-HHH-CCCCEEEEECHHHHHHH Q ss_conf 777538972156756--------201468984698256768875046899988--999-862-37838998078999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRN--------FHFEDYLIEHKIPLRVIDCYYSQDIAYPET--TMK-NLL-QNADAILFYARSSVLYF 181 (232) Q Consensus 114 ~~~~~vl~~~g~~~~--------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~--~~~-~~~-~~~d~i~f~S~~~v~~~ 181 (232) ..+..|+--|..+.- -.......+.|... .||-++-.+...- ... ++. .++++.++.-+.....+ T Consensus 143 ~~g~~ILThcnsg~lAt~~~gta~~~~~~a~~~g~~~---~v~v~EsrP~~qG~~lta~~L~~~gi~~t~I~Dsa~~~~m 219 (340) T d1t9ka_ 143 KDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRI---RVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLM 219 (340) T ss_dssp CTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCE---EEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHH T ss_pred CCCCEEEEECCCCCCEEEECHHHHHHHHHHHHCCCEE---EEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH T ss_conf 4898799823875100022022566778876359447---9998048987742788777887559846997243066665 Q ss_pred HH-HCCH-----HHC---CEEEEECCHHH-HHHHHHCCCCEEEECC Q ss_conf 97-1354-----405---80399718899-9999976996699879 Q gi|255764510|r 182 FS-LPLP-----AKI---SAAFLCLSNNI-ASAIPASYKNVVTVAC 217 (232) Q Consensus 182 ~~-~~~~-----~~~---~~~~~~ig~~t-A~~~~~~g~~~~~va~ 217 (232) .. .+.. +.. .-.+--+|... |-.++..+.....+|+ T Consensus 220 ~~~~vd~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~V~a~ 265 (340) T d1t9ka_ 220 KRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAP 265 (340) T ss_dssp HTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECC T ss_pred HHCCCCEEEECCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEE T ss_conf 3055446875000103689887752589998999864874799952 No 52 >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=22.40 E-value=18 Score=13.34 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=14.6 Q ss_pred CEEEEECCHHHHHHHHHHHHHC Q ss_conf 9389858968869999999987 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKM 22 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~ 22 (232) |||+||++.+ .++.+.|++. T Consensus 1 Mki~v~~~lp--~e~~e~L~~~ 20 (121) T d1qp8a2 1 MELYVNFELP--PEAEEELRKY 20 (121) T ss_dssp CEEECCSCCC--HHHHHHHHTT T ss_pred CEEEEECCCC--HHHHHHHHHC T ss_conf 9899818899--9999986214 No 53 >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} Probab=20.92 E-value=20 Score=13.15 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=44.5 Q ss_pred CEEEEECCCCC----CCCHHHHHHHCCCEEEEEEEEEE-CCCCC--CHHHHHHHHCCCCEEEE-ECHHHHHHHHHHCCHH Q ss_conf 53897215675----62014689846982567688750-46899--98899986237838998-0789999999713544 Q gi|255764510|r 117 KPLIYLGGKPR----NFHFEDYLIEHKIPLRVIDCYYS-QDIAY--PETTMKNLLQNADAILF-YARSSVLYFFSLPLPA 188 (232) Q Consensus 117 ~~vl~~~g~~~----~~~l~~~L~~~g~~v~~~~vY~~-~~~~~--~~~~~~~~~~~~d~i~f-~S~~~v~~~~~~~~~~ 188 (232) +++.++..... .....+.|.+.|+.+.-+.+-.. ..... ....+...-..+|.+++ ..+..+...++.+... T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~ 93 (136) T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL 93 (136) T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH T ss_pred CEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEECEECCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHH T ss_conf 96999964699997368999999638997148873035433400003464444057873578841478899999999851 Q ss_pred HCCEEEE---ECCHHHHHHHHHCCCCEE Q ss_conf 0580399---718899999997699669 Q gi|255764510|r 189 KISAAFL---CLSNNIASAIPASYKNVV 213 (232) Q Consensus 189 ~~~~~~~---~ig~~tA~~~~~~g~~~~ 213 (232) +.+..++ ...+..++.+++.|++.+ T Consensus 94 g~k~i~~q~G~~~~e~~~~a~~~Gi~vV 121 (136) T d1iuka_ 94 RPGLVWLQSGIRHPEFEKALKEAGIPVV 121 (136) T ss_dssp CCSCEEECTTCCCHHHHHHHHHTTCCEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEE T ss_conf 7885998558558999999999599799 Done!