RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)



>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 260

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 37/255 (14%), Positives = 77/255 (30%), Gaps = 32/255 (12%)

Query: 3   IVITRPIKKALRT---QEKIQKMGYIPVMMPL---SYFIHDRESVFLAMQQSYGAIAITS 56
           +++    +          ++   G    ++P+    +      S  L+  + YG +  TS
Sbjct: 4   LLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTS 63

Query: 57  ----------------SESLSTLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSI 100
                           +E              ++ +G A+A L  + G         N+ 
Sbjct: 64  PRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAE 123

Query: 101 NLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTM 160
            LA+ I  ++       PL++  G  +       L +  I +  I  Y +      +  +
Sbjct: 124 KLAEYICSRES---SALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNL 180

Query: 161 KNLLQ---NADAILFYARSSVLYFFSL----PLPAKISAAFLCLSNNIASAIPASYKNVV 213
            +         +I F++ S + Y                 F  +    A A+ A    V 
Sbjct: 181 NSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVS 240

Query: 214 TVACFPKETSLLKLL 228
             A  P   +L   +
Sbjct: 241 CTAESPTPQALATGI 255


>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 54.7 bits (131), Expect = 6e-09
 Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 23/219 (10%)

Query: 1   MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYF----IHDRESVFLAMQQSYGAIAITS 56
           + +      ++    +   +K+G+ P++ P+       + +      A+ Q       T+
Sbjct: 2   VRVAYAGL-RRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATT 60

Query: 57  SESLSTL----------PANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKII 106
              +  L                     A G  +A   ++ G      G   S +L  + 
Sbjct: 61  GVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPL- 119

Query: 107 VEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQN 166
                L   +               E+ L E    +  +  Y           ++  L  
Sbjct: 120 -----LPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLR 174

Query: 167 A--DAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIAS 203
              DA+ F A   V + F      K     L       +
Sbjct: 175 GEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALA 213


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
           [TaxId: 274]}
          Length = 1119

 Score = 27.4 bits (60), Expect = 1.0
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 1   MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFI 35
           +Y  +    K     +E    +G+IP+M     FI
Sbjct: 94  LYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFI 128


>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
           RfbF {Salmonella typhimurium [TaxId: 90371]}
          Length = 259

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 117 KPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYY 149
           KP++ +GGKP  +H       H I   +I C Y
Sbjct: 25  KPMVEIGGKPILWHIMKMYSVHGIKDFIICCGY 57


>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 183

 Score = 25.8 bits (55), Expect = 3.3
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 104 KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEH 138
           +++ E K L+ P+    Y G + +++      + H
Sbjct: 3   RLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSH 37


>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus
           plantarum [TaxId: 1590]}
          Length = 183

 Score = 25.4 bits (54), Expect = 4.4
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAY 155
           ++PLIY G   R    E   +   + + ++  Y ++ I  
Sbjct: 31  ERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVA 70


>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 24.4 bits (52), Expect = 9.1
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 94  HGKDNSINLAKIIVEQK---VLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS 150
            G+  S+    +  +Q    V    +K L+Y   KP NF       ++   + V+D    
Sbjct: 94  CGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 153

Query: 151 QDIAYPETTMK 161
           +    P T   
Sbjct: 154 KFYRDPVTKQH 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 818,471
Number of extensions: 35798
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 13
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)