BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 232

 Score =  477 bits (1227), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL 60
           MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL
Sbjct: 1   MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL 60

Query: 61  STLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLI 120
           STLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLI
Sbjct: 61  STLPANFCRHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLI 120

Query: 121 YLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLY 180
           YLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLY
Sbjct: 121 YLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLY 180

Query: 181 FFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLRR 232
           FFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLRR
Sbjct: 181 FFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLRR 232


>gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 261

 Score = 24.6 bits (52), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 105 IIVEQKVLFTPQKPLIYLGGKPRNFHFED 133
           II+ Q  L +P K L+++G K +NF F +
Sbjct: 177 IIMRQIELISP-KILLFIGNKTKNFFFNN 204


>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 304

 Score = 24.6 bits (52), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 29  MPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI 73
           +P+ YF+ D+ +    +Q+S+  I + + + + +       H PI
Sbjct: 255 IPIDYFVMDQNAYKFLIQESFSEI-LYNEDDIKSRGKRLSDHCPI 298


>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score = 23.9 bits (50), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 31  LSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI 73
           L YF+ DR++    +  S+  ++   S+ L T  +    H P+
Sbjct: 73  LDYFVIDRDNKNFLIDNSFSIVSYDQSD-LDTRRSKLSTHCPL 114


>gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 248

 Score = 22.3 bits (46), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 96  KDNSINLAK-IIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEH 138
           KD SI+  K +I       + +K +IY+ G P   H E Y   H
Sbjct: 97  KDPSIDYVKRVIGLPGDRISLEKGIIYINGAPVVRHMEGYFSYH 140


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.138    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,641
Number of Sequences: 1233
Number of extensions: 5476
Number of successful extensions: 26
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 7
length of query: 232
length of database: 328,796
effective HSP length: 71
effective length of query: 161
effective length of database: 241,253
effective search space: 38841733
effective search space used: 38841733
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)