HHsearch alignment for GI: 255764511 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=96.37 E-value=0.068 Score=32.89 Aligned_cols=85 Identities=12% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCE
Q ss_conf 608388888998376882889999974---8909998099899999999852148-852771132788987653123324
Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDG 106 (341)
Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdg 106 (341)
T Consensus 108 ~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~-~~FD~ 186 (471)
T PRK11933 108 FADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP-EMFDA 186 (471)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCC-CCCCE
T ss_conf 24889999899957785489999999758996699983889999999999997199847999358667403230-10667
Q ss_pred EEEECCCHHH
Q ss_conf 7862252078
Q gi|255764511|r 107 VVFDLGVSSM 116 (341)
Q Consensus 107 Il~DLGvSS~ 116 (341)
T Consensus 187 ILvDaPCSG~ 196 (471)
T PRK11933 187 ILLDAPCSGE 196 (471)
T ss_pred EEECCCCCCC
T ss_conf 9987888887