HHsearch alignment for GI: 255764511 and conserved domain: pfam04445
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=95.82 E-value=0.078 Score=32.52 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=55.2
Q ss_pred HCCCCCC--EEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH----------HCCCCEEEECCCHHHHHHHH
Q ss_conf 0838888--89983768828899999748909998099899999999852----------14885277113278898765
Q gi|255764511|r 32 LNPAPGK--VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR----------DYKEQFSLFQATFSQLQDYV 99 (341)
Q Consensus 32 l~~~~~g--~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~----------~~~~r~~~~~~~F~~i~~~l 99 (341)
T Consensus 69 vG~k~~~~p~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~- 147 (235)
T pfam04445 69 VGIKGGYLPTVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEP- 147 (235)
T ss_pred HCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHH-
T ss_conf 6678899983898787757889999818996999978899999999999998748155799996289983887999752-
Q ss_pred HHCCCCEEEEECCCH
Q ss_conf 312332478622520
Q gi|255764511|r 100 PDKGVDGVVFDLGVS 114 (341)
Q Consensus 100 ~~~~vdgIl~DLGvS 114 (341)
T Consensus 148 ~~~~~DvIYLDPMFP 162 (235)
T pfam04445 148 NIDQPDVVYLDPMYP 162 (235)
T ss_pred CCCCCCEEEECCCCC
T ss_conf 468987899737688