HHsearch alignment for GI: 255764511 and conserved domain: pfam04445

>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=95.82  E-value=0.078  Score=32.52  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=55.2

Q ss_pred             HCCCCCC--EEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH----------HCCCCEEEECCCHHHHHHHH
Q ss_conf             0838888--89983768828899999748909998099899999999852----------14885277113278898765
Q gi|255764511|r   32 LNPAPGK--VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR----------DYKEQFSLFQATFSQLQDYV   99 (341)
Q Consensus        32 l~~~~~g--~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~----------~~~~r~~~~~~~F~~i~~~l   99 (341)
T Consensus        69 vG~k~~~~p~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~-  147 (235)
T pfam04445        69 VGIKGGYLPTVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEP-  147 (235)
T ss_pred             HCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHH-
T ss_conf             6678899983898787757889999818996999978899999999999998748155799996289983887999752-


Q ss_pred             HHCCCCEEEEECCCH
Q ss_conf             312332478622520
Q gi|255764511|r  100 PDKGVDGVVFDLGVS  114 (341)
Q Consensus       100 ~~~~vdgIl~DLGvS  114 (341)
T Consensus       148 ~~~~~DvIYLDPMFP  162 (235)
T pfam04445       148 NIDQPDVVYLDPMYP  162 (235)
T ss_pred             CCCCCCEEEECCCCC
T ss_conf             468987899737688