HHsearch results for GI: 255764511 and protein with PDBid: 1g8a_A

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=97.02  E-value=0.0022  Score=41.12  Aligned_cols=87  Identities=11%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf             0986886608388888998376882889999974---8909998099899999999852148852771132788987653
Q gi|255764511|r   24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP  100 (341)
Q Consensus        24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~  100 (341)
                      ++.-.++.|.++||..++|.-.|.|+-+..+.+.   .|+|+|+|..|.++..+.++.+..+ ++..+...-.....+..
T Consensus        61 ~i~~~l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg~~G~V~avD~s~~~l~~l~~~~~~~~-ni~~v~~da~~~~~~~~  139 (227)
T 1g8a_A           61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NIVPILGDATKPEEYRA  139 (227)
T ss_dssp             HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-TEEEEECCTTCGGGGTT
T ss_pred             HHHCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCHHHCCC
T ss_conf             99703531698999999997178788999999984899669999899999999998787669-83499987679446544


Q ss_pred             -HCCCCEEEEEC
Q ss_conf             -12332478622
Q gi|255764511|r  101 -DKGVDGVVFDL  111 (341)
Q Consensus       101 -~~~vdgIl~DL  111 (341)
                       ...||.|+.|+
T Consensus       140 ~~~~vd~v~~~~  151 (227)
T 1g8a_A          140 LVPKVDVIFEDV  151 (227)
T ss_dssp             TCCCEEEEEECC
T ss_pred             CCCEEEEEEEEE
T ss_conf             567199999760