HHsearch results for GI: 255764511 and protein with PDBid: 1g8a_A
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=97.02 E-value=0.0022 Score=41.12 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=64.0
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 0986886608388888998376882889999974---8909998099899999999852148852771132788987653
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~ 100 (341)
++.-.++.|.++||..++|.-.|.|+-+..+.+. .|+|+|+|..|.++..+.++.+..+ ++..+...-.....+..
T Consensus 61 ~i~~~l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg~~G~V~avD~s~~~l~~l~~~~~~~~-ni~~v~~da~~~~~~~~ 139 (227)
T 1g8a_A 61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NIVPILGDATKPEEYRA 139 (227)
T ss_dssp HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-TEEEEECCTTCGGGGTT
T ss_pred HHHCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCHHHCCC
T ss_conf 99703531698999999997178788999999984899669999899999999998787669-83499987679446544
Q ss_pred -HCCCCEEEEEC
Q ss_conf -12332478622
Q gi|255764511|r 101 -DKGVDGVVFDL 111 (341)
Q Consensus 101 -~~~vdgIl~DL 111 (341)
...||.|+.|+
T Consensus 140 ~~~~vd~v~~~~ 151 (227)
T 1g8a_A 140 LVPKVDVIFEDV 151 (227)
T ss_dssp TCCCEEEEEECC
T ss_pred CCCEEEEEEEEE
T ss_conf 567199999760