HHsearch results for GI: 255764511 and protein with PDBid: 1uwv_A

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.49  E-value=0.00049  Score=45.34  Aligned_cols=90  Identities=18%  Similarity=0.357  Sum_probs=70.4

Q ss_pred             CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHH-HH
Q ss_conf             3400986886608388888998376882889999974890999809989999999985214-885277113278898-76
Q gi|255764511|r   21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQ-DY   98 (341)
Q Consensus        21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~i~-~~   98 (341)
                      ...|++.+++++.+.++..++|.=-|.|..|..+.+...+|+|+|.+++|+..|++..+.. -+++.|++++..... ..
T Consensus       271 ~~~l~~~v~~~l~~~~~~~vlDLYcG~G~fsl~La~~~~~V~gvE~~~~Av~~A~~na~~n~~~n~~f~~~~~~~~~~~~  350 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ  350 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf             99999999998445688779995688517778766505624566354999999999999849975699914756664430


Q ss_pred             -HHHCCCCEEEEE
Q ss_conf             -531233247862
Q gi|255764511|r   99 -VPDKGVDGVVFD  110 (341)
Q Consensus        99 -l~~~~vdgIl~D  110 (341)
                       ....++|.|++|
T Consensus       351 ~~~~~~~d~vilD  363 (433)
T 1uwv_A          351 PWAKNGFDKVLLD  363 (433)
T ss_dssp             GGGTTCCSEEEEC
T ss_pred             HHHCCCCCEEEEC
T ss_conf             6652799989989