HHsearch results for GI: 255764511 and protein with PDBid: 2pjd_A
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=96.17 E-value=0.01 Score=36.83 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=52.2
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 88660838888899837688288999997489--0999809989999999985214885277113278898765312332
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vd 105 (341)
.++.|.+.+++.++|-=.|.|.-+..+++.++ +|+++|.++.|+..|+++++..+-...++.++- ...+ +..+|
T Consensus 188 Ll~~l~~~~~~~VLDlGcG~G~l~~~la~~~p~~~v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~---~~~~-~~~fD 263 (343)
T 2pjd_A 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV---FSEV-KGRFD 263 (343)
T ss_dssp HHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TTTC-CSCEE
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCC---HHCC-CCCCC
T ss_conf 9985650589829993252779999999978997899998999999999999998499379996440---1226-65545
Q ss_pred EEEEEC
Q ss_conf 478622
Q gi|255764511|r 106 GVVFDL 111 (341)
Q Consensus 106 gIl~DL 111 (341)
.|+.|.
T Consensus 264 ~Iv~Np 269 (343)
T 2pjd_A 264 MIISNP 269 (343)
T ss_dssp EEEECC
T ss_pred EEEECC
T ss_conf 899887