HHsearch results for GI: 255764511 and protein with PDBid: 3m6w_A
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.35 E-value=0.0029 Score=40.39 Aligned_cols=88 Identities=23% Similarity=0.259 Sum_probs=71.5
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf 886608388888998376882889999974---89099980998999999998521488527711327889876531233
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~v 104 (341)
+...|.+++|..++|+--+-||.|..|.+. .+.|+|.|.++.-+....++++.++-+..+.+..-..+..... ..+
T Consensus 93 ~~~~L~~~~g~~VLDlCAAPGGKt~~la~~l~~~g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~-~~f 171 (464)
T 3m6w_A 93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFG-TYF 171 (464)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHC-SCE
T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCC-CCC
T ss_conf 9997299999979883658765599999885358357622431788888988888618861687232243320466-644
Q ss_pred CEEEEECCCHHH
Q ss_conf 247862252078
Q gi|255764511|r 105 DGVVFDLGVSSM 116 (341)
Q Consensus 105 dgIl~DLGvSS~ 116 (341)
|.||.|-=.|..
T Consensus 172 D~ILvDaPCSG~ 183 (464)
T 3m6w_A 172 HRVLLDAPCSGE 183 (464)
T ss_dssp EEEEEECCCCCG
T ss_pred CEEEECCCCCCC
T ss_conf 379844876667