HHsearch results for GI: 255764511 and protein with PDBid: 3m6w_A

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.35  E-value=0.0029  Score=40.39  Aligned_cols=88  Identities=23%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf             886608388888998376882889999974---89099980998999999998521488527711327889876531233
Q gi|255764511|r   28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV  104 (341)
Q Consensus        28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~v  104 (341)
                      +...|.+++|..++|+--+-||.|..|.+.   .+.|+|.|.++.-+....++++.++-+..+.+..-..+..... ..+
T Consensus        93 ~~~~L~~~~g~~VLDlCAAPGGKt~~la~~l~~~g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~-~~f  171 (464)
T 3m6w_A           93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFG-TYF  171 (464)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHC-SCE
T ss_pred             HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCC-CCC
T ss_conf             9997299999979883658765599999885358357622431788888988888618861687232243320466-644


Q ss_pred             CEEEEECCCHHH
Q ss_conf             247862252078
Q gi|255764511|r  105 DGVVFDLGVSSM  116 (341)
Q Consensus       105 dgIl~DLGvSS~  116 (341)
                      |.||.|-=.|..
T Consensus       172 D~ILvDaPCSG~  183 (464)
T 3m6w_A          172 HRVLLDAPCSGE  183 (464)
T ss_dssp             EEEEEECCCCCG
T ss_pred             CEEEECCCCCCC
T ss_conf             379844876667